FF:11902-125F3: Difference between revisions

Latest revision as of 18:28, 4 June 2020

Name:	migratory langerhans cells, donor2
Species:	Human (Homo sapiens)
Library ID:	CNhs13536
Sample type:	primary cells
Genomic View:	UCSC
RefEX:	Specific genes
FANTOM CAT:	1, 2, 3, 4, 5, 6, 7
CAGEd-oPOSSUM:	link
ZENBU report :	link

Additional information

Sample information

strain	NA
tissue	NA
dev stage	NA
sex	NA
age	NA
cell type	langerhans cell
cell line	NA
company	NA
collaboration	Teunis Geijtenbeek
External link for information	[{{{sample_info_link}}} {{{sample_info_link}}}]

RNA information

lot number	LC-B
catalog number	NA
sample type	total RNA
extraction protocol (Details)	OP-RNA-extraction-totalRNA-miRNeasy_Mini-v1.0

CAGE Accession numbers

Method		Sample accession id
CAGE		SAMD00004915

Library accession numbers

Library id		Method		Exp. accession id		Run accession id
CNhs13536		CAGE		DRX008569		DRR009441

Accession ID Hg19

Library id		BAM		CTSS
CNhs13536		DRZ000866		DRZ002251

Accession ID Hg38

Library id		BAM		CTSS
CNhs13536		DRZ012216		DRZ013601

Download raw sequence, BAM & CTSS

Hg19

Fasta	BAM	CTSS
download	download	donwload

Hg38

BAM	CTSS
download	donwload

Relative expression to median (log10)

Transcription factors with enriched expression in this sampleRanked list of transcription factor promoter expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.

Co-expression clusters with enriched expression in this sampleRanked list of co-expression cluster expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed. Analyst:NA link to dataset. data

Coexpression cluster	score
C0-CD14-Eosinophils-Neutrophils-Basophils-CD34-immature-Peripheral	0
C1-testis-epididymis-embryonic-medulla-pituitary-trachea-caudate	0
C10-occipital-temporal-parietal-brain-duodenum-Neurons-Neural	0
C100-rhabdomyosarcoma-gastric-pineal-Wilms-cervical-mesodermal-endometrial	0
C101-small-cerebellum-maxillary-colon-parietal-epididymis-merkel	0
C102-neuroblastoma-testicular-pituitary-carcinosarcoma-rectum-acantholytic-iPS	0
C103-CD4-CD8-Natural-Peripheral-Whole-Neutrophils-Basophils	0
C104-Mast-Basophils-immature-CD14-CD34-eye-Natural	0
C105-heart-skeletal-occipital-hippocampus-acute-Sebocyte-penis	0
C106-Hep2-epitheloid-placenta-cervical-rectal-anaplastic-glassy	0
C107-Neutrophils-CD14-Eosinophils-Monocytederived-Whole-Peripheral-blood	0
C108-breast-hepatoblastoma-MCF7-parotid-salivary-submaxillary-prostate	0
C109-Reticulocytes-non-acute-Hodgkin-Burkitt-retinoblastoma-lymphoma	-0.286
C11-cerebellum-medulla-pons-parietal-occipital-middle-medial	0
C110-leukemia-chronic-Eosinophils-acute-Whole-CD34-Lymphatic	0
C111-medulla-lung-trachea-testis-caudate-epididymis-throat	0
C112-gastric-pancreas-temporal-duodenum-small-extraskeletal-adrenal	0
C113-thyroid-throat-lung-lymph-small-colon-trachea	0
C114-teratocarcinoma-medulloblastoma-carcinosarcoma-iPS-anaplastic-acute-neuroblastoma	0
C115-pituitary-Neural-caudate-putamen-amygdala-medulla-hippocampus	0
C116-myeloma-xeroderma-tonsil-CD19-spleen-lymph-trachea	0
C117-serous-clear-kidney-neuroectodermal-mesothelioma-endometrial-Intestinal	0
C118-cerebellum-parietal-occipital-medial-middle-frontal-insula	0
C119-CD4-CD8-Natural-Neutrophils-CD14-Peripheral-CD19	0
C12-Mast-Basophils-immature-chorionic-mature-CD14-Eosinophils	0
C120-immature-salivary-tongue-skin-cervical-CD14-CD34	0
C121-NK-Natural-CD8-CD4-anaplastic-chronic-B	0
C122-chronic-Reticulocytes-skeletal-leukemia-acute-colon-Tracheal	0
C123-CD19-Natural-CD8-CD4-CD14-Peripheral-Basophils	0.0523
C124-small-temporal-duodenum-colon-gall-signet-Hepatocyte	0
C125-mucinous-alveolar-mesothelioma-Smooth-lung-CD14-Nucleus	0
C126-gastrointestinal-argyrophil-smallcell-merkel-bile-insula-brain	0
C127-maxillary-small-hepatoblastoma-hepatocellular-alveolar-colon-argyrophil	0
C128-testicular-choriocarcinoma-H9-teratocarcinoma-pancreatic-iPS-HES3GFP	0
C129-liver-Hepatocyte-colon-duodenum-temporal-testicular-small	0
C13-Neutrophils-Eosinophils-CD14-Monocytederived-Whole-Peripheral-CD4	0
C130-iPS-HES3GFP-H9-teratocarcinoma-testicular-colon-Alveolar	0
C131-lung-trachea-Alveolar-thyroid-umbilical-throat-skin	0
C132-acute-small-Dendritic-Macrophage-CD14-Neutrophils-Monocytederived	0
C133-signet-gall-small-kidney-colon-ductal-adenocarcinoma	0
C134-skeletal-diaphragm-tongue-throat-Skeletal-skin-penis	0
C135-neuroblastoma-retinoblastoma-carcinoid-choriocarcinoma-testicular-acute-rectum	0
C136-Wilms-extraskeletal-anaplastic-rhabdomyosarcoma-cholangiocellular-nonsmall-neuroectodermal	0
C137-large-ductal-melanoma-cervical-Endothelial-Smooth-chronic	0
C138-diffuse-Burkitt-lymphangiectasia-lymphoma-acute-CD19-pineal	0
C139-astrocytoma-skin-salivary-gall-serous-Mallassezderived-renal	0
C14-Whole-blood-Reticulocytes-liver-Neutrophils-Eosinophils-spleen	0
C140-Renal-Endothelial-Hepatic-Lymphatic-heart-lung-spleen	0
C141-Hodgkin-acute-thymus-chronic-vein-CD4-B	0
C142-Preadipocyte-Fibroblast-hepatic-Ewing-Adipocyte-Olfactory-Hair	0
C143-Monocytederived-CD14-Macrophage-Dendritic-Basophils-CD14CD16-Osteoblast	0
C144-CD4-tonsil-NK-appendix-CD8-splenic-mycosis	0
C145-neuroblastoma-peripheral-neuroectodermal-neuroepithelioma-carcinoid-adult-extraskeletal	0
C146-lymphangiectasia-lymphoma-gall-lymph-tonsil-gastric-transitionalcell	0
C147-Neutrophils-Eosinophils-CD4-CD14-CD8-Natural-Peripheral	0
C148-kidney-small-epididymis-pancreas-serous-duodenum-temporal	0
C149-occipital-medial-brain-amygdala-parietal-cerebral-cerebellum	0
C15-anaplastic-small-skeletal-neuroblastoma-parietal-temporal-tongue	0
C150-merkel-carcinoid-nonsmall-gastrointestinal-argyrophil-pineal-small	0
C151-CD14-Natural-Basophils-CD8-Eosinophils-CD4-Mast	0.0542
C152-peripheral-neuroectodermal-neuroepithelioma-neuroblastoma-testicular-carcinoid-lung	0
C153-rhabdomyosarcoma-liposarcoma-pancreatic-somatostatinoma-Reticulocytes-lymphoma-testicular	0
C154-adenocarcinoma-Mesenchymal-Cardiac-small-sacrococcigeal-Smooth-Prostate	0
C155-pituitary-placenta-nonsmall-cervical-smallcell-choriocarcinoma-epitheloid	0
C156-plasma-splenic-hereditary-B-large-xeroderma-b	0
C157-testicular-H9-testis-iPS-teratocarcinoma-colon-trachea	0
C158-adrenal-gastric-temporal-parietal-duodenum-caudate-putamen	0
C159-choriocarcinoma-pancreatic-placenta-chorionic-testicular-bronchioalveolar-seminal	0
C16-medial-amygdala-occipital-parietal-olfactory-putamen-brain	0
C160-medulla-Hepatocyte-retina-corpus-liver-pineal-cerebral	0
C161-mesothelioma-Mesothelial-acute-mesenchymal-extraskeletal-renal-placenta	0
C162-spinal-locus-medulla-substantia-thalamus-globus-diencephalon	0
C163-Skeletal-skeletal-Pericytes-Hepatic-rhabdomyosarcoma-throat-mesenchymal	0
C164-signet-corpus-optic-mucinous-substantia-salivary-choriocarcinoma	0
C165-epithelioid-Adipocyte-mesothelioma-myxofibrosarcoma-lung-gastric-Mesothelial	0
C166-Macrophage-Monocytederived-Dendritic-adipose-lymph-CD14-lung	0
C167-Basophils-Mast-Eosinophils-Neutrophils-Peripheral-Whole-CD4	0
C168-Mast-CD14-immature-Basophils-Eosinophils-CD34-Peripheral	0
C169-hereditary-adult-gall-lymphangiectasia-chronic-b-choriocarcinoma	0
C17-Mast-CD14-Monocytederived-Lymphatic-Smooth-mesenchymal-Macrophage	0
C170-epitheloid-cervical-Hep2-keratoacanthoma-adult-neuroblastoma-signet	0
C171-merkel-neuroblastoma-pineal-retinoblastoma-carcinoid-small-eye	0
C172-chorionic-skeletal-tongue-amniotic-liver-gastrointestinal-Pericytes	0
C173-Adipocyte-mature-skin-left-Hepatocyte-Osteoblast-adipose	0
C174-CD14-Neutrophils-Smooth-mesothelioma-embryonic-Monocytederived-Eosinophils	0
C175-Eosinophils-Neutrophils-CD4-Basophils-CD19-CD8-Natural	0.0757
C176-Eosinophils-Neutrophils-Mast-CD14-CD4-Basophils-CD19	0.181
C177-melanoma-Melanocyte-mesenchymal-retina-Mallassezderived-Gingival-squamous	0
C178-spleen-liver-Hepatocyte-b-lymph-vein-thymus	0
C179-CD19-Peripheral-lymphoma-blood-lymph-spleen-tonsil	0
C18-CD4-CD8-thymus-Whole-Peripheral-Natural-blood	0
C180-skeletal-heart-Hepatocyte-acute-occipital-hippocampus-middle	-0.0199
C181-liposarcoma-somatostatinoma-neuroblastoma-mesothelioma-nonsmall-small-Alveolar	0
C182-renal-mature-mesothelioma-lung-Mammary-Adipocyte-acute	0
C183-acute-non-CD34-diffuse-CD133-myeloma-Burkitt	0
C184-somatostatinoma-smallcell-nonsmall-small-gastrointestinal-pineal-thyroid	0
C185-small-adrenal-gastric-Mesenchymal-acute-HES3GFP-testis	0
C186-squamous-papillotubular-large-Tracheal-oral-Small-epidermoid	0
C187-migratory-immature-Dendritic-CD19-CD14-Monocytederived-Macrophage	1.013
C188-left-heart-tongue-skeletal-Skeletal-diaphragm-throat	0
C189-b-splenic-tonsil-CD19-lymph-appendix-spleen	0
C19-embryonic-testis-cord-chronic-CD14-NK-mesothelioma	0
C190-colon-small-rectum-duodenum-appendix-temporal-oral	0
C191-leiomyoblastoma-Mast-parietal-acute-bone-neuroepithelioma-embryonic	0
C192-Neutrophils-CD14-Peripheral-Eosinophils-CD8-Natural-CD4	0
C193-Mesenchymal-Adipocyte-mature-Cardiac-heart-CD14CD16-CD14	0
C194-MCF7-breast-prostate-Intestinal-diffuse-Wilms-Alveolar	0
C195-Small-Gingival-Bronchial-Smooth-mesenchymal-Urothelial-Tracheal	0
C196-testicular-iPS-H9-teratocarcinoma-HES3GFP-choriocarcinoma-endometrial	0
C197-tongue-esophagus-tonsil-salivary-cervix-nasal-Gingival	0
C198-Mesenchymal-Hair-Hepatic-Fibroblast-Smooth-tenocyte-Pericytes	0
C199-glioblastoma-B-osteosarcoma-Fibroblast-heart-rhabdomyosarcoma-myxofibrosarcoma	0
C2-Eosinophils-Neutrophils-CD14-Whole-Basophils-Peripheral-Mast	0
C20-heart-left-skeletal-diaphragm-tongue-umbilical-throat	0
C200-seminal-Cardiac-Smooth-Hair-submaxillary-Neutrophils-mixed	0.00941
C201-colon-small-adenocarcinoma-duodenum-temporal-signet-gall	0
C202-salivary-skin-penis-tongue-uterus-cervical-immature	0
C203-acute-NK-chronic-CD133-lymphoma-immature-Dendritic	0
C204-Smooth-nasal-CD4-CD19-CD8-CD14-CD34	0
C205-mycosis-cord-hairy-xeroderma-CD4-B-b	0
C206-melanoma-somatostatinoma-nonsmall-small-neuroblastoma-smallcell-pituitary	0
C207-Corneal-Keratinocyte-Esophageal-Mammary-Bronchial-Urothelial-Sebocyte	0
C208-skin-amniotic-papillotubular-salivary-umbilical-Alveolar-serous	0
C209-acute-myelodysplastic-CD34-granulocyte-CD133-liver-spleen	0
C21-cord-mycosis-hairy-xeroderma-adult-CD4-anaplastic	0
C210-Burkitt-lymphoma-appendix-acute-diffuse-CD19-tonsil	0
C211-small-Hepatocyte-liver-colon-temporal-duodenum-kidney	0
C212-chronic-acute-Whole-Reticulocytes-leukemia-blood-CD34	0
C213-CD14-Natural-CD8-CD4-Basophils-Eosinophils-Peripheral	0.0376
C214-Neurons-Neural-duodenum-temporal-occipital-parietal-brain	0
C215-chronic-acute-peripheral-Hepatocyte-osteosarcoma-NK-immature	0
C216-osteosarcoma-Smooth-Mesenchymal-large-neuroectodermal-acute-CD34	0
C217-carcinoid-neuroectodermal-mature-mesodermal-colon-acute-occipital	0
C218-tonsil-lymph-CD19-spleen-colon-appendix-salivary	0
C219-nasal-Basophils-amniotic-Melanocyte-CD14-Osteoblast-duodenum	0
C22-CD4-CD8-Natural-Basophils-CD14-Peripheral-CD19	0
C220-Adipocyte-mature-left-breast-skin-liver-adipose	0
C221-alveolar-Osteoblast-Myoblast-mesenchymal-liposarcoma-Smooth-hepatocellular	0
C222-Melanocyte-Tracheal-Neutrophils-seminal-Smooth-Hair-Chondrocyte	-0.0507
C223-Chondrocyte-basal-renal-Fibroblast-Smooth-spindle-Synoviocyte	0
C224-clear-serous-pleomorphic-choriocarcinoma-mesothelioma-amniotic-renal	0
C225-ductal-alveolar-giant-prostate-salivary-squamous-Tracheal	0
C226-Corneal-Keratinocyte-Esophageal-Urothelial-Mammary-Bronchial-Tracheal	0
C227-chorionic-amniotic-Mesenchymal-Placental-gastric-diaphragm-tongue	0
C228-colon-Intestinal-Prostate-hepatoblastoma-hepatocellular-testis-adult	0
C229-Mesenchymal-CD4-Melanocyte-acute-skeletal-left-heart	0
C23-CD4-CD8-Natural-Peripheral-Basophils-CD19-CD14	0
C230-aorta-normal-heart-penis-osteosarcoma-basal-lung	0
C231-Mesothelial-mesenchymal-mesothelioma-Fibroblast-Preadipocyte-leiomyoma-mycosis	0
C232-teratocarcinoma-HES3GFP-H9-iPS-testicular-neuroblastoma-cerebellum	0
C233-uterus-cervix-ovary-epididymis-colon-rectum-MCF7	0
C234-oral-epidermoid-malignant-cervical-ductal-lung-keratoacanthoma	0
C235-Intestinal-Prostate-liver-colon-small-kidney-pancreas	0
C236-CD14-Neutrophils-Monocytederived-renal-Eosinophils-testis-mesothelioma	0
C237-acute-breast-testicular-hepatoblastoma-chronic-argyrophil-Bronchial	0
C238-stomach-gall-breast-duodenum-temporal-MCF7-smallcell	0
C239-CD4-lymphangiectasia-CD8-NK-mycosis-Renal-hairy	0
C24-pineal-eye-retina-retinoblastoma-medulloblastoma-small-cerebral	0
C240-Adipocyte-Preadipocyte-Osteoblast-Chondrocyte-tenocyte-Synoviocyte-mesenchymal	0
C241-Reticulocytes-chronic-Tracheal-Hodgkin-Endothelial-Hair-thymus	-0.277
C242-acute-Chondrocyte-myelodysplastic-granulocyte-biphenotypic-Fibroblast-stomach	0
C243-Chondrocyte-trachea-Synoviocyte-mesodermal-renal-Fibroblast-Ewing	0
C244-CD14-Monocytederived-Hepatocyte-heart-Neutrophils-acute-Macrophage	0
C245-prostate-penis-salivary-esophagus-kidney-Neutrophils-Pancreatic	0
C246-Neutrophils-Eosinophils-Whole-CD14-CD14CD16-Basophils-migratory	0.26
C247-pons-locus-medulla-spinal-paracentral-medial-occipital	0
C248-iPS-Aortic-Hep2-amygdala-acute-medial-Myoblast	0.547
C249-nonsmall-small-smallcell-occipital-somatostatinoma-maxillary-medial	0
C25-small-colon-temporal-duodenum-liver-Hepatocyte-gall	0
C250-Mast-Neutrophils-CD14-Eosinophils-CD8-Peripheral-CD4	0.0542
C251-gall-tonsil-trachea-CD14-salivary-throat-tongue	0
C252-hepatic-Olfactory-sacrococcigeal-leiomyoma-normal-Synoviocyte-glioblastoma	0
C253-spleen-rhabdomyosarcoma-Hepatocyte-small-uterus-liver-rectum	0
C254-prostate-rhabdomyosarcoma-seminal-Fibroblast-transitionalcell-Smooth-Iris	0
C255-Wilms-leiomyoblastoma-kidney-adrenal-MCF7-epithelioid-Mast	0
C256-occipital-caudate-amygdala-medial-thalamus-hippocampus-medulla	0
C257-pineal-insula-frontal-occipital-temporal-medial-paracentral	0
C258-hepatoblastoma-hepatocellular-signet-colon-Intestinal-Prostate-gastric	0
C259-Preadipocyte-Adipocyte-Fibroblast-Chondrocyte-tenocyte-normal-Ewing	0
C26-Eosinophils-Neutrophils-CD14-CD14CD16-Basophils-Monocytederived-Whole	0.0542
C260-acute-chronic-Natural-NK-Basophils-biphenotypic-blood	0
C261-locus-medial-parietal-pons-diencephalon-olfactory-spinal	0
C262-breast-MCF7-skeletal-Reticulocytes-mucinous-hepatoblastoma-Wilms	0
C263-cervical-keratoacanthoma-tongue-skin-esophagus-throat-tonsil	0
C264-giant-keratoacanthoma-colon-fibrosarcoma-HES3GFP-Hep2-acute	0
C265-CD4-Eosinophils-CD14-Natural-CD19-Basophils-CD8	0.0677
C266-acute-chronic-leukemia-small-choriocarcinoma-hepatoma-Mast	0
C267-pancreatic-placenta-choriocarcinoma-testicular-teratocarcinoma-chorionic-clear	0
C268-Mallassezderived-Urothelial-Gingival-Small-Bronchial-Tracheal-Prostate	0
C269-Basophils-Mast-Eosinophils-mature-CD14-chorionic-CD4	0
C27-pancreas-temporal-duodenum-salivary-ductus-umbilical-lung	0
C270-CD4-Fibroblast-acute-iPS-Aortic-CD34-Smooth	0.193
C271-pineal-spinal-locus-globus-medulla-thalamus-cerebellum	0
C272-CD19-CD4-CD8-Whole-Peripheral-lymph-tonsil	0
C273-Neutrophils-CD14-Eosinophils-Monocytederived-CD4-Natural-Mast	0
C274-CD14-Mast-immature-Basophils-mature-vagina-Hepatocyte	0
C275-pons-medulla-cerebellum-locus-thalamus-diencephalon-spinal	0
C276-mesothelioma-kidney-renal-small-clear-cerebellum-Renal	0
C277-mesothelioma-epithelioid-thyroid-extraskeletal-alveolar-glioblastoma-adenocarcinoma	0
C278-amygdala-hippocampus-insula-medial-putamen-temporal-olfactory	0
C279-parietal-cerebellum-occipital-temporal-middle-duodenum-medial	0
C28-thymus-acute-vein-Hodgkin-chronic-throat-Dendritic	0
C280-Mast-Natural-CD19-CD8-Eosinophils-CD34-CD4	0.0542
C281-Hodgkin-Reticulocytes-chronic-NK-acute-retinoblastoma-small	-0.459
C282-acute-B-tonsil-CD19-submaxillary-lymph-throat	0
C283-tenocyte-Chondrocyte-mesenchymal-Macrophage-pleomorphic-Synoviocyte-cholangiocellular	0
C284-parietal-occipital-medial-temporal-olfactory-locus-hippocampus	0
C285-cervical-Hep2-small-colon-temporal-duodenum-bronchogenic	0
C286-cerebellum-occipital-optic-parietal-globus-caudate-medial	0
C287-Hepatocyte-Chondrocyte-Adipocyte-Synoviocyte-liver-tenocyte-mesenchymal	0
C288-Chondrocyte-Renal-Pericytes-Fibroblast-aorta-Smooth-Meningeal	0
C289-chorionic-skeletal-heart-Mast-amniotic-granulosa-left	0
C29-mature-adipose-Adipocyte-breast-Lymphatic-vein-heart	0
C290-Eosinophils-CD14-Basophils-Mast-CD4-CD8-immature	0.0951
C291-spinal-substantia-retina-medulla-tongue-skeletal-trachea	0
C292-Mesenchymal-skin-umbilical-Adipocyte-mesenchymal-Chondrocyte-skeletal	0
C293-CD14-CD14CD16-Basophils-Peripheral-immature-Eosinophils-CD34	0
C294-CD14-Macrophage-Monocytederived-CD14CD16-Neutrophils-Basophils-Peripheral	0
C295-Fibroblast-Smooth-Myoblast-Chondrocyte-hepatic-Synoviocyte-Preadipocyte	0
C296-gall-small-mesothelioma-acute-bronchioalveolar-epidermoid-mixed	0
C297-Eosinophils-CD4-Basophils-Natural-Neutrophils-CD8-Peripheral	0.052
C298-small-optic-substantia-thalamus-diencephalon-globus-occipital	0
C299-CD14CD16-Eosinophils-Neutrophils-CD14-Whole-Basophils-blood	0
C3-occipital-temporal-insula-medial-postcentral-frontal-amygdala	0
C30-thyroid-throat-mesothelioma-mucinous-trachea-chorionic-mesenchymal	0
C300-CD4-CD8-NK-Natural-blood-mycosis-Basophils	0
C301-Smooth-mesenchymal-Endothelial-Hepatic-basal-hepatic-chorionic	0
C302-acute-peripheral-Neutrophils-NK-myelodysplastic-CD34-carcinoid	0
C303-CD14-Basophils-Peripheral-Eosinophils-CD14CD16-Neutrophils-Whole	0
C305-heart-skeletal-smooth-left-bladder-penis-esophagus	0
C31-skeletal-tongue-diaphragm-throat-penis-skin-trachea	0
C32-middle-occipital-parietal-hippocampus-amygdala-medial-olfactory	0
C33-Reticulocytes-liver-Whole-blood-chronic-acute-spleen	0
C34-placenta-chorionic-choriocarcinoma-mesothelioma-Wilms-Smooth-bile	0
C35-caudate-putamen-diencephalon-nucleus-globus-thalamus-insula	0
C36-B-b-splenic-plasma-xeroderma-adrenal-Burkitt	0
C37-salivary-submaxillary-parotid-seminal-tongue-ductus-trachea	0
C38-extraskeletal-rhabdomyosarcoma-adrenal-rectal-mesothelioma-lung-Wilms	0
C39-epididymis-ductus-seminal-testis-acute-thyroid-CD133	0
C4-optic-corpus-substantia-medulla-spinal-thalamus-globus	0
C40-eye-retina-Lens-pineal-tongue-retinoblastoma-small	0
C41-retina-eye-medulla-Retinal-medulloblastoma-kidney-pineal	0
C42-small-lung-maxillary-pharyngeal-Mesenchymal-Wilms-colon	0
C43-ductus-seminal-duodenum-temporal-gall-prostate-bladder	0
C44-Dendritic-CD19-CD133-granulocyte-acute-thymus-immature	0
C45-testicular-choriocarcinoma-H9-teratocarcinoma-Wilms-pancreatic-iPS	0
C46-acute-Hodgkin-thymus-CD8-chronic-CD4-merkel	0
C47-CD19-Burkitt-acute-xeroderma-tonsil-lymphoma-appendix	0
C48-smooth-bladder-esophagus-colon-penis-aorta-uterus	0
C49-H9-iPS-testicular-HES3GFP-teratocarcinoma-hepatoblastoma-choriocarcinoma	0
C5-Hepatocyte-liver-hepatocellular-Intestinal-kidney-small-pancreas	0
C50-chorionic-placenta-amniotic-migratory-smallcell-chronic-choriocarcinoma	0
C51-kidney-mesothelioma-renal-signet-gall-lung-pancreas	0
C52-adult-NK-chronic-cord-testis-embryonic-myeloma	0
C53-medulloblastoma-pineal-retinoblastoma-small-retina-eye-pituitary	0
C54-Dendritic-Macrophage-Monocytederived-CD14-leiomyoma-adipose-immature	0
C55-hepatocellular-Intestinal-liver-Prostate-fibrosarcoma-Hepatocyte-hepatoblastoma	0
C56-heart-left-umbilical-skeletal-penis-diaphragm-tongue	0
C57-Neutrophils-Eosinophils-Whole-CD4-CD8-CD19-Natural	0.152
C58-Melanocyte-melanoma-retina-Retinal-eye-migratory-H9	0
C59-Smooth-Fibroblast-Mesenchymal-tenocyte-Ewing-skin-hepatic	0
C6-CD14-Eosinophils-Basophils-Peripheral-CD34-Natural-immature	0
C60-esophagus-tonsil-throat-tongue-uterus-cervix-cervical	0
C61-migratory-Dendritic-immature-Macrophage-xeroderma-cord-b	0.905
C62-Burkitt-tonsil-CD19-submaxillary-spleen-salivary-lymph	0
C63-neuroectodermal-neuroblastoma-carcinoid-peripheral-chronic-neuroepithelioma-acute	0
C64-Mast-chronic-acute-immature-chorionic-Basophils-Dendritic	0
C65-CD14-Eosinophils-Monocytederived-Basophils-immature-Macrophage-Neutrophils	0
C66-cerebellum-middle-occipital-parietal-medial-amygdala-hippocampus	0
C67-CD14-Monocytederived-Macrophage-dura-Dendritic-spleen-lung	0
C68-amniotic-chorionic-Placental-salivary-placenta-tongue-mesothelioma	0
C69-anaplastic-CD14-cord-hairy-mycosis-adult-NK	0
C7-CD14-Eosinophils-Neutrophils-Smooth-Basophils-Macrophage-Mast	0
C70-parotid-submaxillary-salivary-throat-trachea-aorta-tongue	0
C71-Monocytederived-Macrophage-CD14-Dendritic-Osteoblast-leiomyoma-Prostate	0
C72-skeletal-tongue-throat-heart-diaphragm-penis-left	0
C73-pineal-eye-retina-caudate-cerebellum-left-parietal	0
C74-splenic-B-b-plasma-xeroderma-lymphoma-hairy	0
C75-Eosinophils-Natural-CD8-Basophils-CD14-CD4-Peripheral	0
C76-argyrophil-gastrointestinal-temporal-duodenum-neuroblastoma-merkel-smallcell	0
C77-Saos2-osteosarcoma-Neutrophils-Natural-Chondrocyte-Basophils-CD8	0
C78-lymphoma-plasma-tonsil-appendix-lymph-seminal-trachea	0
C79-chorionic-Chondrocyte-Cardiac-Smooth-Fibroblast-Preadipocyte-Mesenchymal	0
C8-Natural-CD8-Basophils-CD4-CD14-Peripheral-CD34	0
C80-immature-migratory-CD14-Dendritic-splenic-cord-Mast	0.102
C81-trachea-salivary-throat-aorta-eye-submaxillary-parotid	0
C82-Basophils-CD14-Eosinophils-Natural-Peripheral-immature-CD34	0
C83-choriocarcinoma-pancreatic-placenta-chorionic-HES3GFP-testicular-amniotic	0
C84-choriocarcinoma-pancreatic-Wilms-Mallassezderived-thymus-salivary-colon	0
C85-neuroblastoma-carcinoid-retinoblastoma-small-pineal-rhabdomyosarcoma-medulloblastoma	0
C86-colon-carcinoid-small-neuroectodermal-giant-large-neuroepithelioma	0
C87-retinoblastoma-left-nonsmall-heart-small-diaphragm-bronchogenic	0
C88-Melanocyte-melanoma-Macrophage-Mesenchymal-migratory-Dendritic-Monocytederived	0
C89-small-retinoblastoma-medulloblastoma-iPS-acantholytic-eye-bronchogenic	0
C9-skeletal-diaphragm-tongue-throat-penis-heart-left	0
C90-neuroectodermal-peripheral-neuroepithelioma-neuroblastoma-carcinoid-parietal-putamen	0
C91-Fibroblast-Smooth-mesenchymal-Mesothelial-Small-Preadipocyte-Hair	0
C92-CD14CD16-CD14-Eosinophils-Basophils-Neutrophils-Macrophage-Whole	0
C93-chronic-acute-leukemia-acantholytic-medulloblastoma-testis-papillotubular	0
C94-smallcell-adrenal-lung-nonsmall-small-somatostatinoma-teratocarcinoma	0
C95-lung-aorta-trachea-penis-Alveolar-throat-endometrioid	0
C96-non-acute-tonsil-spleen-Burkitt-lymphoma-appendix	0
C97-small-smallcell-gastrointestinal-argyrophil-putamen-duodenum-brain	0
C98-CD8-Natural-Basophils-blood-CD4-Peripheral-Whole	0
C99-hairy-mycosis-submaxillary-salivary-cord-kidney-parotid	0

Repeat families with enriched expression in this sampleSummary:Ranked list of repeat family expression in this sample relative tothe median expression in the FANTOM5 collection is shown. Value is log10transformed. Analyst:NA link to dataset. data

TFBS(DNA)motifs over-represented in proximal region of promoters active in this sample

JASPAR motifsSummary:Association of JASPAR motif to the promoter expression in thissample. Pearson's correlation between the number of TFBSs estimated byusing the position-weight matrix for each promoter and its expression isexpressed as Z-score by taking the ones based on random position-weightmatrix, and the tail probability of the normal distribution correspondingto the Z-score is taken as the resulting P-value. Lower P-value indicatesmore (non-random) association of the motif to promoter expression Analyst: Michiel de Hoon link to dataset. data

library id: CNhs13536

Jaspar motif	Logo	P-value
MA0002.2	MA0002.2	4.10112e-5
MA0003.1	MA0003.1	0.944
MA0004.1	MA0004.1	0.359
MA0006.1	MA0006.1	0.617
MA0007.1	MA0007.1	0.891
MA0009.1	MA0009.1	0.179
MA0014.1	MA0014.1	0.244
MA0017.1	MA0017.1	0.00325
MA0018.2	MA0018.2	0.584
MA0019.1	MA0019.1	0.631
MA0024.1	MA0024.1	0.0522
MA0025.1	MA0025.1	0.133
MA0027.1	MA0027.1	0.951
MA0028.1	MA0028.1	0.71
MA0029.1	MA0029.1	0.599
MA0030.1	MA0030.1	0.854
MA0031.1	MA0031.1	0.486
MA0035.2	MA0035.2	0.332
MA0038.1	MA0038.1	0.357
MA0039.2	MA0039.2	0.00436
MA0040.1	MA0040.1	0.777
MA0041.1	MA0041.1	0.809
MA0042.1	MA0042.1	0.913
MA0043.1	MA0043.1	0.109
MA0046.1	MA0046.1	0.361
MA0047.2	MA0047.2	0.139
MA0048.1	MA0048.1	0.808
MA0050.1	MA0050.1	0.0618
MA0051.1	MA0051.1	0.334
MA0052.1	MA0052.1	0.325
MA0055.1	MA0055.1	0.817
MA0057.1	MA0057.1	0.647
MA0058.1	MA0058.1	0.321
MA0059.1	MA0059.1	0.428
MA0060.1	MA0060.1	0.864
MA0061.1	MA0061.1	2.0737e-16
MA0062.2	MA0062.2	0.00559
MA0065.2	MA0065.2	0.0127
MA0066.1	MA0066.1	0.883
MA0067.1	MA0067.1	0.0196
MA0068.1	MA0068.1	0.0737
MA0069.1	MA0069.1	0.687
MA0070.1	MA0070.1	0.233
MA0071.1	MA0071.1	0.109
MA0072.1	MA0072.1	0.37
MA0073.1	MA0073.1	0.542
MA0074.1	MA0074.1	0.595
MA0076.1	MA0076.1	0.874
MA0077.1	MA0077.1	0.544
MA0078.1	MA0078.1	0.629
MA0079.2	MA0079.2	0.584
MA0080.2	MA0080.2	5.0345e-8
MA0081.1	MA0081.1	0.0648
MA0083.1	MA0083.1	0.00222
MA0084.1	MA0084.1	0.0743
MA0087.1	MA0087.1	0.439
MA0088.1	MA0088.1	0.317
MA0090.1	MA0090.1	0.00342
MA0091.1	MA0091.1	0.706
MA0092.1	MA0092.1	0.802
MA0093.1	MA0093.1	0.271
MA0099.2	MA0099.2	0.0321
MA0100.1	MA0100.1	0.592
MA0101.1	MA0101.1	9.49061e-13
MA0102.2	MA0102.2	0.717
MA0103.1	MA0103.1	0.125
MA0104.2	MA0104.2	0.27
MA0105.1	MA0105.1	8.54809e-15
MA0106.1	MA0106.1	0.642
MA0107.1	MA0107.1	1.46951e-16
MA0108.2	MA0108.2	8.4274e-4
MA0111.1	MA0111.1	0.314
MA0112.2	MA0112.2	0.00402
MA0113.1	MA0113.1	0.896
MA0114.1	MA0114.1	0.0132
MA0115.1	MA0115.1	0.148
MA0116.1	MA0116.1	0.00211
MA0117.1	MA0117.1	0.322
MA0119.1	MA0119.1	0.997
MA0122.1	MA0122.1	0.271
MA0124.1	MA0124.1	0.427
MA0125.1	MA0125.1	0.485
MA0131.1	MA0131.1	0.915
MA0135.1	MA0135.1	0.787
MA0136.1	MA0136.1	6.34737e-5
MA0137.2	MA0137.2	0.865
MA0138.2	MA0138.2	0.224
MA0139.1	MA0139.1	0.129
MA0140.1	MA0140.1	0.384
MA0141.1	MA0141.1	0.0116
MA0142.1	MA0142.1	0.329
MA0143.1	MA0143.1	0.294
MA0144.1	MA0144.1	0.963
MA0145.1	MA0145.1	0.125
MA0146.1	MA0146.1	0.105
MA0147.1	MA0147.1	0.346
MA0148.1	MA0148.1	0.976
MA0149.1	MA0149.1	0.295
MA0150.1	MA0150.1	1.98451e-4
MA0152.1	MA0152.1	0.0874
MA0153.1	MA0153.1	0.0476
MA0154.1	MA0154.1	8.08174e-4
MA0155.1	MA0155.1	0.193
MA0156.1	MA0156.1	0.0425
MA0157.1	MA0157.1	0.162
MA0159.1	MA0159.1	0.0175
MA0160.1	MA0160.1	0.00146
MA0162.1	MA0162.1	0.963
MA0163.1	MA0163.1	0.0339
MA0164.1	MA0164.1	0.621
MA0258.1	MA0258.1	0.0337
MA0259.1	MA0259.1	0.609

FANTOM5 phase1 novel unique motifsSummary:Association of the 169 novel and unique motifs discovered in FANTOM5 phase1 in this sample. Among the de-novo motifs discovered by DMF, HOMER,ChIPMunk, and ScanAll, only novel motifs are selected after comparison with known motif sets, and their clustering based on MACRO-APE resulted in169 novel and unique motifs. Their association to the promoter expression is evaluated in the same way to the JASPAR motif above Analyst: Michiel de Hoon link to dataset. data

library id: CNhs13536

Novel motif	Logo	P-value
1	1	0.0487
10	10	0.0526
100	100	0.659
101	101	0.451
102	102	0.427
103	103	0.0269
104	104	0.68
105	105	0.0837
106	106	0.00599
107	107	0.68
108	108	0.768
109	109	0.0329
11	11	0.158
110	110	0.397
111	111	0.0792
112	112	0.0304
113	113	0.897
114	114	0.0125
115	115	0.165
116	116	0.811
117	117	0.0128
118	118	0.181
119	119	0.0102
12	12	0.367
120	120	0.61
121	121	0.75
122	122	0.614
123	123	0.596
124	124	0.127
125	125	0.928
126	126	0.0747
127	127	0.0855
128	128	0.0157
129	129	0.19
13	13	0.0898
130	130	0.837
131	131	0.659
132	132	0.57
133	133	0.905
134	134	0.949
135	135	0.353
136	136	0.392
137	137	0.0247
138	138	0.809
139	139	0.237
14	14	0.553
140	140	0.0104
141	141	0.924
142	142	0.2
143	143	0.119
144	144	0.691
145	145	0.366
146	146	0.684
147	147	0.286
148	148	0.0214
149	149	0.831
15	15	0.0261
150	150	0.368
151	151	0.621
152	152	0.45
153	153	0.532
154	154	0.524
155	155	0.0659
156	156	0.498
157	157	0.708
158	158	0.298
159	159	0.297
16	16	0.319
160	160	0.934
161	161	0.22
162	162	0.651
163	163	0.98
164	164	0.617
165	165	0.141
166	166	0.68
167	167	0.849
168	168	0.649
169	169	0.112
17	17	0.691
18	18	0.345
19	19	0.837
2	2	0.917
20	20	0.276
21	21	0.606
22	22	0.536
23	23	0.249
24	24	0.77
25	25	0.284
26	26	0.219
27	27	0.8
28	28	0.476
29	29	0.11
3	3	0.138
30	30	0.592
31	31	0.624
32	32	0.285
33	33	0.359
34	34	0.817
35	35	0.488
36	36	0.118
37	37	0.201
38	38	0.347
39	39	0.969
4	4	0.333
40	40	0.14
41	41	0.161
42	42	0.307
43	43	0.0794
44	44	0.0142
45	45	0.739
46	46	0.131
47	47	0.219
48	48	0.308
49	49	0.0668
5	5	0.548
50	50	0.956
51	51	0.304
52	52	0.0787
53	53	0.744
54	54	0.299
55	55	0.509
56	56	0.874
57	57	0.232
58	58	0.0577
59	59	0.185
6	6	0.939
60	60	0.0377
61	61	0.414
62	62	0.0483
63	63	0.466
64	64	0.483
65	65	0.371
66	66	0.0884
67	67	0.168
68	68	0.94
69	69	0.763
7	7	0.0647
70	70	0.0114
71	71	0.123
72	72	0.215
73	73	0.451
74	74	0.656
75	75	0.13
76	76	0.426
77	77	0.952
78	78	0.0488
79	79	0.971
8	8	0.463
80	80	0.739
81	81	0.382
82	82	0.157
83	83	0.147
84	84	0.299
85	85	0.221
86	86	0.255
87	87	0.0429
88	88	0.163
89	89	0.427
9	9	0.577
90	90	0.015
91	91	0.499
92	92	0.469
93	93	0.545
94	94	0.0657
95	95	0.0524
96	96	0.01
97	97	0.843
98	98	0.213
99	99	0.566

de novo motifs identified by HOMER in promoters active in this sampleSummary:The result of HOMER in this sample is shown. Analyst:NA library id: CNhs13536

FANTOM5 (FF) ontology

Direct parent terms

is_a relathionship
EFO:0002091 biological replicate
FF:0011136 human migratory langerhans cells sample

Ancestor terms (non development)Summary:Connected ontology terms with is_a, part_of or located_in relationship Analyst: Hideya Kawaji link to source data data

CL: Cell type
0000000 (cell), 0000000 (cell)
0000003 (native cell)
0000988 (hematopoietic cell)
0000548 (animal cell)
0002371 (somatic cell)
0000219 (motile cell)
0000738 (leukocyte)
0000990 (conventional dendritic cell)
0000255 (eukaryotic cell)
0000451 (dendritic cell)
0000453 (Langerhans cell)

FF: FANTOM5
0000102 (sample by type)
0000210 (human sample)
0000002 (in vivo cell sample)
0000101 (sample by species)
0000001 (sample)
0011136 (human migratory langerhans cells sample)

Ancestor terms (development)Summary:Connected ontology terms with develops_from, derives_from or preceded_by relationship Analyst: Hideya Kawaji link to source data data
CL:0000049 (common myeloid progenitor)
CL:0000134 (mesenchymal cell)

@@ Line 1: / Line 1: @@
 {{f5samples
-|id=FF:11902-125F3
+|DRA_sample_Accession=CAGE@SAMD00004915
-|name=migratory langerhans cells, donor2
+|accession_numbers=CAGE;DRX008569;DRR009441;DRZ000866;DRZ002251;DRZ012216;DRZ013601
-|sample_id=11902
+|ancestors_in_anatomy_facet=
-|rna_tube_id=125F3
+|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000988,CL:0000548,CL:0002371,CL:0000219,CL:0000738,CL:0000990,CL:0000255,CL:0000451,CL:0000453
-|rna_box=125
-|rna_position=F3
-|sample_cell_lot=
-|sample_cell_catalog=
-|sample_company=
-|rna_lot_number=LC-B
-|rna_catalog_number=
-|sample_species=
-|sample_strain=
-|sample_dev_stage=
-|sample_tissue=
-|sample_donor(cell lot)=
-|sample_sex=
-|sample_age=
-|sample_ethnicity=
-|rna_rin=
-|rna_od260/230=0.92
-|rna_od260/280=1.97
-|sample_cell_type=langerhans cell
-|sample_cell_line=
-|sample_collaboration=Teunis Geijtenbeek
-|sample_experimental_condition=
-|sample_disease=
-|rna_sample_type=total RNA
-|rna_extraction_protocol=OP-RNA-extraction-totalRNA-miRNeasy_Mini-v1.0
-|rna_weight_ug=0.7838
-|rna_concentration=0.07838
-|sample_note=
-|profile_hcage=CNhs13536,LSID1029,release012,COMPLETED
-|profile_cagescan=,,,
-|profile_srnaseq=,,,
-|profile_rnaseq=,,,
-|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000004,CL:0000012,CL:0000034,CL:0000037,CL:0000048,CL:0000049,CL:0000063,CL:0000134,CL:0000144,CL:0000219,CL:0000255,CL:0000451,CL:0000453,CL:0000548,CL:0000566,CL:0000723,CL:0000738,CL:0000763,CL:0000837,CL:0000988,CL:0000990,CL:0002032,CL:0002320,CL:0002371
-|ancestors_in_anatomy_facet=UBERON:0000061,UBERON:0000465,UBERON:0000479,UBERON:0001062,UBERON:0002384
 |ancestors_in_disease_facet=
-|sample_description=
+|ancestors_in_ff_facet=FF:0000102,FF:0000210,FF:0000002,FF:0000101,FF:0000001,FF:0011136
+|comment=
+|created_by=
+|creation_date=
+|data_phase=2
+|datafreeze_phase=2
+|def=
+|expression_enrichment_score=chr6:391743..391759,+!p1@IRF4!2.96!912.78!IRF4;;chr11:47400078..47400106,-!p1@SPI1!2.29!192.12!SPI1;;chr20:20348740..20348757,+!p1@INSM1!2.25!175.78!INSM1;;chr9:102584262..102584276,+!p1@NR4A3!1.88!162.23!NR4A3;;chr19:50922187..50922204,+!p1@SPIB!1.79!61.25!SPIB;;chr4:185395590..185395627,-!p3@IRF2!1.67!56.87!IRF2;;chr1:25291475..25291511,-!p2@RUNX3!1.67!46.10!RUNX3;;chr1:25256756..25256774,-!p1@RUNX3!1.64!78.92!RUNX3;;chr2:61108808..61108821,+!p3@REL!1.64!52.88!REL;;chr2:61108695..61108753,+!p1@REL!1.62!265.20!REL;;chr9:102584128..102584144,+!p3@NR4A3!1.60!72.81!NR4A3;;chr6:106534192..106534224,+!p1@PRDM1!1.51!86.63!PRDM1;;chr9:102584159..102584174,+!p2@NR4A3!1.50!54.47!NR4A3;;chr2:68592406..68592424,+!p1@PLEK!1.50!30.29!PLEK;;chr1:157108130..157108173,-!p1@ETV3!1.47!198.10!ETV3;;chr19:45252008..45252024,+!p2@BCL3!1.44!85.30!BCL3;;chr7:50344251..50344288,+!p3@IKZF1!1.44!26.44!IKZF1;;chr10:104155480..104155534,+!p2@NFKB2!1.42!160.10!NFKB2;;chr2:61108771..61108789,+!p4@REL!1.41!37.20!REL;;chr7:50343634..50343717,+!p2@IKZF1!1.41!24.98!IKZF1;;chr2:192015701..192015743,-!p1@STAT4!1.37!30.43!STAT4;;chr7:50344289..50344323,+!p1@IKZF1!1.37!22.32!IKZF1;;chr9:102584241..102584261,+!p4@NR4A3!1.35!32.82!NR4A3;;chr6:106534230..106534254,+!p2@PRDM1!1.34!52.08!PRDM1;;chr1:151319654..151319698,-!p2@RFX5!1.33!43.58!RFX5;;chr11:47400062..47400077,-!p2@SPI1!1.33!20.59!SPI1;;chr12:11802753..11802834,+!p2@ETV6!1.31!93.27!ETV6;;chr5:71803177..71803255,-!p1@ZNF366!1.31!19.27!ZNF366;;chr2:8822176..8822196,+!p1@ID2!1.28!2478.99!ID2;;chr19:45579725..45579743,-!p1@ZNF296!1.28!78.92!ZNF296;;chr4:185395633..185395651,-!p2@IRF2!1.28!28.57!IRF2;;chr15:90544532..90544563,+!p1@ZNF710!1.27!34.94!ZNF710;;chr10:35484053..35484076,+!p1@CREM!1.26!42.38!CREM;;chr2:214015343..214015366,-!p3@IKZF2!1.25!16.87!IKZF2;;chr1:8935472..8935488,-!p20@ENO1!1.21!15.28!ENO1;;chr2:214015111..214015179,-!p1@IKZF2!1.20!26.71!IKZF2;;chr2:169312725..169312810,+!p1@CERS6!1.19!348.24!CERS6;;chr16:31885093..31885165,+!p1@ZNF267!1.18!213.25!ZNF267;;chr4:103422499..103422632,+!p1@NFKB1!1.16!275.16!NFKB1;;chr19:3574157..3574180,+!p4@HMG20B!1.15!13.29!HMG20B;;chr9:102584278..102584285,+!p5@NR4A3!1.15!13.29!NR4A3;;chr10:104155659..104155676,+!p4@NFKB2!1.13!15.68!NFKB2;;chr7:150102756..150102772,+!p5@ZNF775!1.13!12.36!ZNF775;;chr2:61108878..61108891,+!p5@REL!1.12!12.22!REL;;chr1:157108746..157108762,-!p4@ETV3!1.10!11.69!ETV3;;chrX:56258844..56258882,+!p1@KLF8!1.09!15.68!KLF8;;chr19:50432132..50432217,+!p2@ATF5!1.08!13.02!ATF5;;chr13:41593425..41593480,-!p1@ELF1!1.07!68.16!ELF1;;chr19:50432453..50432468,+!p1@ATF5!1.04!568.53!ATF5;;chr9:117150254..117150271,-!p1@AKNA!1.04!27.90!AKNA;;chr11:47237922..47237964,+!p4@DDB2!1.04!11.43!DDB2;;chr12:27485785..27485816,+!p1@ARNTL2!1.03!69.09!ARNTL2;;chr2:61108650..61108687,+!p2@REL!1.01!46.50!REL;;chr16:85932760..85932775,+!p1@IRF8!1.01!9.17!IRF8;;chr4:103478257..103478273,+!p28@NFKB1!1.00!9.03!NFKB1;;chr19:3574330..3574393,+!p2@HMG20B!1.00!8.90!HMG20B;;chr2:74229812..74229867,+!p1@TET3!0.99!22.32!TET3;;chr20:62462566..62462631,-!p1@ZBTB46!0.99!17.01!ZBTB46;;chr7:106810484..106810494,+!p4@HBP1!0.99!8.77!HBP1;;chr19:45504688..45504782,+!p1@RELB!0.98!53.28!RELB;;chr10:104154246..104154347,+!p3@NFKB2!0.98!53.28!NFKB2;;chr6:12012170..12012245,+!p1@HIVEP1!0.98!43.98!HIVEP1;;chr10:51572339..51572376,+!p4@NCOA4!0.98!19.53!NCOA4;;chr1:212782094..212782109,+!p1@ATF3!0.95!225.34!ATF3;;chr12:54785074..54785122,-!p2@ZNF385A!0.94!11.96!ZNF385A;;chr2:192015750..192015793,-!p2@STAT4!0.94!10.63!STAT4;;chr3:12330560..12330579,+!p1@PPARG!0.93!8.77!PPARG;;chrX:56258900..56258917,+!p4@KLF8!0.93!7.57!KLF8;;chr15:50647274..50647336,-!p1@GABPB1!0.92!52.88!GABPB1;;chr9:117160738..117160782,-!p2@AKNA!0.92!31.22!AKNA;;chr1:221052776..221052799,+!p1@HLX!0.91!13.29!HLX;;chr11:13299319..13299424,+!p1@ARNTL!0.90!74.14!ARNTL;;chr10:3827371..3827386,-!p2@KLF6!0.90!60.72!KLF6;;chr5:321810..321877,+!p1@AHRR!0.90!22.85!AHRR;;chr12:27485823..27485868,+!p2@ARNTL2!0.89!28.96!ARNTL2;;chr7:17338324..17338341,+!p3@AHR!0.89!23.65!AHR;;chr3:101546827..101546847,+!p2@NFKBIZ!0.89!9.83!NFKBIZ;;chr2:214014959..214015006,-!p4@IKZF2!0.88!6.64!IKZF2;;chr22:41697484..41697496,+!p3@ZC3H7B!0.87!8.37!ZC3H7B;;chr1:6684918..6684936,+!p2@THAP3!0.87!7.97!THAP3;;chr1:221052840..221052875,+!p4@HLX!0.86!7.57!HLX;;chr7:50343895..50343936,+!p5@IKZF1!0.86!6.24!IKZF1;;chr2:214016254..214016282,-!p7@IKZF2!0.84!5.98!IKZF2;;chr11:47399996..47400014,-!p4@SPI1!0.84!5.98!SPI1;;chr14:89883509..89883587,-!p2@FOXN3!0.83!42.52!FOXN3;;chr12:27485762..27485776,+!p3@ARNTL2!0.83!16.48!ARNTL2;;chr1:157108764..157108776,-!p7@ETV3!0.83!5.71!ETV3;;chr2:239148671..239148686,-!p1@HES6!0.82!22.06!HES6;;chr22:41697497..41697515,+!p2@ZC3H7B!0.82!16.21!ZC3H7B;;chr2:231090433..231090469,+!p1@SP140!0.82!5.58!SP140;;chr12:54778471..54778528,-!p1@ZNF385A!0.82!5.58!ZNF385A;;chr3:5021113..5021180,+!p1@BHLHE40!0.81!408.69!BHLHE40;;chr6:12012249..12012266,+!p5@HIVEP1!0.81!9.83!HIVEP1;;chr19:3573282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A!0.59!2.92!STAT5A;;chr19:12273866..12273935,+!p1@ZNF136!0.58!30.69!ZNF136;;chr8:123793860..123793921,+!p2@ZHX2!0.58!8.90!ZHX2;;chr10:3824332..3824425,-!p4@KLF6!0.58!5.05!KLF6;;chr1:8935456..8935467,-!p27@ENO1!0.58!2.79!ENO1;;chr10:3827417..3827428,-!p3@KLF6!0.57!28.70!KLF6;;chr1:40915725..40915808,+!p1@ZNF643!0.57!9.43!ZNF643;;chr2:214016496..214016544,-!p5@IKZF2!0.57!4.12!IKZF2;;chr1:27023752..27023799,+!p4@ARID1A!0.57!3.85!ARID1A;;chr12:54785054..54785072,-!p4@ZNF385A!0.57!3.19!ZNF385A;;chr3:71114066..71114114,-!p1@FOXP1!0.56!67.10!FOXP1;;chr17:36861496..36861586,+!p1@MLLT6!0.56!31.62!MLLT6;;chr12:51566562..51566584,-!p2@TFCP2!0.56!8.64!TFCP2;;chr19:45250948..45250998,+!p3@BCL3!0.56!7.84!BCL3;;chr2:10091815..10091864,+!p1@GRHL1!0.56!3.72!GRHL1;;chr7:63505799..63505904,+!p1@ZNF727!0.56!2.66!ZNF727;;chr14:35873947..35873965,-!p1@NFKBIA!0.55!204.61!NFKBIA;;chr6:109804412..109804458,-!p1@ZBTB24!0.55!28.17!ZBTB24;;chrX:129244454..129244488,-!p1@ELF4!0.55!22.72!ELF4;;chr1:221052700..221052730,+!p5@HLX!0.55!4.25!HLX;;chr1:44679370..44679422,+!p3@DMAP1!0.55!3.59!DMAP1;;chr12:12764917..12764931,+!p4@CREBL2!0.55!3.59!CREBL2;;chrX:129244430..129244442,-!p5@ELF4!0.55!2.52!ELF4;;chr14:75988831..75988847,+!p2@BATF!0.55!2.52!BATF;;chr19:3576938..3576962,+!p9@HMG20B!0.55!2.52!HMG20B;;chr18:3450161..3450183,+!p1@TGIF1!0.54!108.42!TGIF1;;chr11:67007477..67007493,+!p2@KDM2A!0.54!26.44!KDM2A;;chr1:167190091..167190156,+!p1@POU2F1!0.54!24.45!POU2F1;;chr1:156470515..156470542,-!p2@MEF2D!0.54!16.21!MEF2D;;chr20:46130602..46130613,+!p3@NCOA3!0.54!8.50!NCOA3;;chr1:157108282..157108347,-!p3@ETV3!0.54!5.98!ETV3;;chr14:23755247..23755278,-!p2@HOMEZ!0.54!5.71!HOMEZ;;chr1:221053049..221053075,+!p3@HLX!0.54!4.78!HLX;;chr14:69259772..69259790,-!p1@ZFP36L1!0.53!317.95!ZFP36L1;;chr1:14075903..14075940,+!p1@PRDM2!0.53!66.03!PRDM2;;chr14:23755297..23755350,-!p1@HOMEZ!0.53!36.01!HOMEZ;;chrX:129402866..129402880,-!p1@ZNF280C!0.53!17.27!ZNF280C;;chr8:81398444..81398472,+!p1@ZBTB10!0.53!11.96!ZBTB10;;chr6:35227282..35227330,+!p2@ZNF76!0.53!10.89!ZNF76;;chr3:150126416..150126437,+!p3@TSC22D2!0.53!10.76!TSC22D2;;chr22:42229210..42229229,+!p3@SREBF2!0.53!6.64!SREBF2;;chr3:63898321..63898396,+!p3@ATXN7!0.53!6.38!ATXN7;;chr4:103422232..103422241,+!p6@NFKB1!0.53!3.06!NFKB1;;chr7:139762641..139762768,-!p1@PARP12!0.52!40.52!PARP12;;chr3:71179699..71179744,-!p2@FOXP1!0.52!22.06!FOXP1;;chr2:10183651..10183713,+!p1@KLF11!0.52!21.39!KLF11;;chr9:35732647..35732678,+!p2@CREB3!0.52!16.21!CREB3;;chr10:35484804..35484902,+!p2@CREM!0.52!10.89!CREM;;chr19:12444440..12444455,-!p1@ZNF563!0.52!4.52!ZNF563;;chr19:53039233..53039247,+!p2@ZNF808!0.52!3.85!ZNF808;;chr1:202777535..202777556,-!p1@KDM5B!0.51!97.66!KDM5B;;chr19:19932513..19932569,-!p1@ZNF506!0.51!54.87!ZNF506;;chr19:39390587..39390646,+!p1@NFKBIB!0.51!47.17!NFKBIB;;chr7:152133059..152133102,-!p1@MLL3!0.51!46.64!MLL3;;chr11:47236489..47236567,+!p2@DDB2!0.51!39.86!DDB2;;chr21:30671211..30671234,+!p3@BACH1!0.51!13.69!BACH1;;chr19:53073532..53073551,+!p1@ZNF701!0.51!12.76!ZNF701;;chr6:7108569..7108683,+!p3@RREB1!0.51!10.89!RREB1;;chr6:168227611..168227624,+!p2@MLLT4!0.51!3.59!MLLT4;;chr2:231090344..231090361,-!p3@SP110!0.51!2.26!SP110;;chr19:45251395..45251432,+!p8@BCL3!0.51!2.26!BCL3;;chr1:67396044..67396071,+!p3@MIER1!0.50!9.57!MIER1;;chr3:71179746..71179783,-!p7@FOXP1!0.50!9.03!FOXP1;;chr9:37465273..37465338,-!p2@ZBTB5!0.50!6.91!ZBTB5;;chr15:31619535..31619569,+!p5@KLF13!0.50!4.65!KLF13;;chr19:20011731..20011743,+!p3@ZNF93!0.50!3.06!ZNF93;;chr18:3452133..3452150,+!p19@TGIF1!0.50!2.52!TGIF1;;chr2:145274900..145274934,-!p4@ZEB2!0.49!16.48!ZEB2;;chr9:3525968..3526016,-!p1@RFX3!0.49!15.68!RFX3;;chr14:35872453..35872485,-!p2@NFKBIA!0.49!6.24!NFKBIA;;chr11:47235980..47236028,+!p3@DDB2!0.49!5.71!DDB2;;chr19:22235279..22235301,+!p1@ZNF257!0.49!4.65!ZNF257;;chr19:20011696..20011705,+!p4@ZNF93!0.49!2.52!ZNF93;;chrX:56258885..56258896,+!p5@KLF8!0.49!2.13!KLF8;;chr2:214016899..214016926,-!p10@IKZF2!0.49!2.13!IKZF2;;chr20:47894569..47894799,-!p1@ZNFX1!0.48!73.08!ZNFX1;;chr15:31619326..31619390,+!p2@KLF13!0.48!30.96!KLF13;;chr5:172483347..172483407,+!p1@C5orf41!0.48!20.46!CREBRF;;chr12:46123464..46123512,+!p1@ARID2!0.48!15.15!ARID2;;chr2:178128199..178128245,-!p3@NFE2L2!0.48!14.22!NFE2L2;;chr3:12329397..12329433,+!p2@PPARG!0.48!5.58!PPARG;;chr3:178789648..178789661,-!p4@ZMAT3!0.48!3.59!ZMAT3;;chr19:45254529..45254561,+!p10@BCL3!0.48!3.06!BCL3;;chr1:151319318..151319338,-!p3@RFX5!0.48!2.66!RFX5;;chr9:125667739..125667770,-!p4@RC3H2!0.48!2.39!RC3H2;;chr7:50344144..50344157,+!p6@IKZF1!0.48!1.99!IKZF1;;chr22:42229246..42229270,+!p2@SREBF2!0.47!33.35!SREBF2;;chr7:17338266..17338282,+!p1@AHR!0.47!28.43!AHR;;chr7:77428066..77428132,+!p2@PHTF2!0.47!16.87!PHTF2;;chr6:44233297..44233330,-!p2@NFKBIE!0.47!6.51!NFKBIE;;chr9:114287433..114287513,+!p1@ZNF483!0.47!6.24!ZNF483;;chr12:12764947..12764986,+!p2@CREBL2!0.47!4.52!CREBL2;;chr19:37341673..37341699,-!p3@ZNF790!0.47!3.99!ZNF790;;chr3:71630690..71630750,-!p11@FOXP1!0.47!3.72!FOXP1;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+|ffid_belonging_in_development=CL:0000049,CL:0000134
 |fonse_cell_line=
 |fonse_cell_line_closure=
@@ Line 66: / Line 41: @@
 |fonse_treatment=
 |fonse_treatment_closure=
-|top_motifs=
+|has_quality=
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+|hg19ctss=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/migratory%2520langerhans%2520cells%252c%2520donor2.CNhs13536.11902-125F3.hg19.ctss.bed.gz
+|hg19fasta=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/migratory%2520langerhans%2520cells%252c%2520donor2.CNhs13536.11902-125F3.hg19.nobarcode.rdna.fa.gz
+|hg38bam=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.primary_cell.hCAGE/migratory%2520langerhans%2520cells%252c%2520donor2.CNhs13536.11902-125F3.hg38.nobarcode.bam
+|hg38ctss=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.primary_cell.hCAGE/migratory%2520langerhans%2520cells%252c%2520donor2.CNhs13536.11902-125F3.hg38.nobarcode.ctss.bed.gz
+|id=FF:11902-125F3
+|is_a=EFO:0002091;;FF:0011136
+|is_obsolete=
+|library_id=CNhs13536
+|library_id_phase_based=2:CNhs13536
+|microRNAs=
+|microRNAs_nn=
+|microRNAs_nonnovel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer/#/human#cage;sample;11902
+|microRNAs_novel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer_novel/#/human#cage;sample;11902
+|name=migratory langerhans cells, donor2
+|namespace=
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+|profile_rnaseq=
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+|sample_cell_type=langerhans cell
+|sample_collaboration=Teunis Geijtenbeek
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lumen;7.87807723912398e-68!GO:0031974;membrane-enclosed lumen;7.87807723912398e-68!GO:0043283;biopolymer metabolic process;2.45038748937968e-64!GO:0003723;RNA binding;8.80103342121136e-64!GO:0033036;macromolecule localization;1.64634505308765e-54!GO:0015031;protein transport;1.37106682816457e-53!GO:0010467;gene expression;2.31999042672298e-52!GO:0005739;mitochondrion;7.88302267880157e-52!GO:0043234;protein complex;4.47029889435419e-51!GO:0045184;establishment of protein localization;5.85553699794347e-51!GO:0019538;protein metabolic process;2.99113859222869e-50!GO:0008104;protein localization;5.05706670803113e-50!GO:0006139;nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;7.59126684185839e-50!GO:0006396;RNA processing;3.56575111996289e-48!GO:0031090;organelle membrane;3.87219775813655e-46!GO:0031981;nuclear lumen;1.44832321129276e-44!GO:0044267;cellular protein metabolic process;2.16076775379317e-44!GO:0044260;cellular macromolecule metabolic process;5.92101728538523e-44!GO:0016071;mRNA metabolic process;3.15853893604546e-43!GO:0006412;translation;7.14716440112916e-42!GO:0046907;intracellular transport;1.81596879156061e-40!GO:0016043;cellular component organization and biogenesis;1.88121343768913e-39!GO:0044429;mitochondrial part;3.26217269764254e-39!GO:0005829;cytosol;5.44131735336811e-38!GO:0008380;RNA splicing;3.27787836029366e-37!GO:0031967;organelle envelope;3.33519804810856e-37!GO:0031975;envelope;7.90716551660634e-37!GO:0006397;mRNA processing;1.00905042841581e-36!GO:0006886;intracellular protein transport;2.63483213095331e-36!GO:0005840;ribosome;3.62614449258324e-34!GO:0009058;biosynthetic process;1.65840253865656e-33!GO:0009059;macromolecule biosynthetic process;1.21405439143438e-32!GO:0065003;macromolecular complex assembly;8.0213804001507e-32!GO:0003676;nucleic acid binding;2.30465044246356e-31!GO:0044249;cellular biosynthetic process;6.38670077117707e-31!GO:0005654;nucleoplasm;4.25927175882618e-30!GO:0016070;RNA metabolic process;7.3642850943362e-30!GO:0003735;structural constituent of ribosome;5.40669176505607e-29!GO:0051649;establishment of cellular localization;1.65418441445609e-27!GO:0051641;cellular localization;4.21112046413506e-27!GO:0005681;spliceosome;4.22590228919795e-27!GO:0022607;cellular component assembly;6.60348532585608e-27!GO:0006996;organelle organization and biogenesis;1.2333290824051e-26!GO:0000166;nucleotide binding;2.43361864889649e-26!GO:0033279;ribosomal subunit;6.82885957097925e-26!GO:0022613;ribonucleoprotein complex biogenesis and assembly;1.23140555418994e-25!GO:0005740;mitochondrial envelope;1.92539482242163e-25!GO:0006259;DNA metabolic process;6.26407572526286e-25!GO:0044451;nucleoplasm part;4.25257687139342e-24!GO:0006512;ubiquitin cycle;8.24451515948167e-24!GO:0031966;mitochondrial membrane;9.95497086912432e-24!GO:0016462;pyrophosphatase activity;4.08768349387863e-23!GO:0016818;hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides;6.18682813781633e-23!GO:0016817;hydrolase activity, acting on acid anhydrides;6.85338270000886e-23!GO:0017111;nucleoside-triphosphatase activity;7.00546108705428e-23!GO:0019866;organelle inner membrane;1.16583535980148e-22!GO:0044265;cellular macromolecule catabolic process;1.23138239638764e-22!GO:0012501;programmed cell death;4.92579122333636e-22!GO:0006915;apoptosis;7.25270568507956e-22!GO:0016874;ligase activity;8.87225121502874e-22!GO:0008219;cell death;5.64976830988852e-21!GO:0016265;death;5.64976830988852e-21!GO:0008134;transcription factor binding;5.70539274891437e-21!GO:0043285;biopolymer catabolic process;8.14341432759438e-21!GO:0051603;proteolysis involved in cellular protein catabolic process;1.09469652659353e-20!GO:0006511;ubiquitin-dependent protein catabolic process;1.67413380464705e-20!GO:0044445;cytosolic part;1.7547513779259e-20!GO:0019941;modification-dependent protein catabolic process;1.81632817134195e-20!GO:0043632;modification-dependent macromolecule catabolic process;1.81632817134195e-20!GO:0005743;mitochondrial inner membrane;2.80255147290634e-20!GO:0044257;cellular protein catabolic process;3.75221622345202e-20!GO:0032553;ribonucleotide binding;7.1190091001471e-20!GO:0032555;purine ribonucleotide binding;7.1190091001471e-20!GO:0005830;cytosolic ribosome (sensu Eukaryota);7.1190091001471e-20!GO:0009057;macromolecule catabolic process;9.19476128412867e-20!GO:0043412;biopolymer modification;1.59945829553767e-19!GO:0048770;pigment granule;1.79778596720762e-19!GO:0042470;melanosome;1.79778596720762e-19!GO:0006119;oxidative phosphorylation;3.31841296629258e-19!GO:0017076;purine nucleotide binding;3.36857130179846e-19!GO:0043228;non-membrane-bound organelle;5.73914911571438e-19!GO:0043232;intracellular non-membrane-bound organelle;5.73914911571438e-19!GO:0012505;endomembrane system;3.3387699193987e-18!GO:0044248;cellular catabolic process;3.97827824422507e-18!GO:0006457;protein folding;6.23002963389027e-18!GO:0000502;proteasome complex (sensu Eukaryota);1.47922762426442e-17!GO:0030163;protein catabolic process;1.77010796206793e-17!GO:0006464;protein modification process;3.60931101897822e-17!GO:0022618;protein-RNA complex assembly;4.1096693060217e-17!GO:0031980;mitochondrial lumen;1.24788542915402e-16!GO:0005759;mitochondrial matrix;1.24788542915402e-16!GO:0016604;nuclear body;1.43735406499417e-16!GO:0043687;post-translational protein modification;4.51429098554616e-16!GO:0006605;protein targeting;4.62851974343039e-16!GO:0050794;regulation of cellular process;6.41157985500996e-16!GO:0044455;mitochondrial membrane part;7.80125486026921e-16!GO:0005730;nucleolus;1.90912195267622e-15!GO:0032559;adenyl ribonucleotide binding;2.67166243360994e-15!GO:0005524;ATP binding;3.31035545113866e-15!GO:0051186;cofactor metabolic process;9.23933603227842e-15!GO:0048193;Golgi vesicle transport;1.09854710717464e-14!GO:0030554;adenyl nucleotide binding;1.43271166448893e-14!GO:0005794;Golgi apparatus;1.57572882262413e-14!GO:0006974;response to DNA damage stimulus;1.58119869451347e-14!GO:0042981;regulation of apoptosis;2.1128241586224e-14!GO:0043067;regulation of programmed cell death;2.81489816831679e-14!GO:0000398;nuclear mRNA splicing, via spliceosome;3.82987289524241e-14!GO:0000375;RNA splicing, via transesterification reactions;3.82987289524241e-14!GO:0000377;RNA splicing, via transesterification reactions with bulged adenosine as nucleophile;3.82987289524241e-14!GO:0016607;nuclear speck;3.93918029710983e-14!GO:0008565;protein transporter activity;4.41669827537338e-14!GO:0006913;nucleocytoplasmic transport;5.15378775067871e-14!GO:0051169;nuclear transport;1.12422723972076e-13!GO:0015934;large ribosomal subunit;1.17498673694779e-13!GO:0008135;translation factor activity, nucleic acid binding;1.23376299790943e-13!GO:0016192;vesicle-mediated transport;1.79406369126889e-13!GO:0003712;transcription cofactor activity;2.76098362322239e-13!GO:0042623;ATPase activity, coupled;2.83014622322002e-13!GO:0016887;ATPase activity;3.48075291481951e-13!GO:0015935;small ribosomal subunit;5.26000638012049e-13!GO:0016655;oxidoreductase activity, acting on NADH or NADPH, quinone or similar compound as acceptor;5.78827532711293e-13!GO:0005635;nuclear envelope;1.05199980777386e-12!GO:0005746;mitochondrial respiratory chain;1.1955498973902e-12!GO:0006325;establishment and/or maintenance of chromatin architecture;2.14758153584163e-12!GO:0019787;small conjugating protein ligase activity;2.72653570535739e-12!GO:0008639;small protein conjugating enzyme activity;3.00481896203064e-12!GO:0044453;nuclear membrane part;4.27648217025702e-12!GO:0051082;unfolded protein binding;4.2805188090076e-12!GO:0006281;DNA repair;4.44539790884222e-12!GO:0004842;ubiquitin-protein ligase activity;5.18810371388327e-12!GO:0050136;NADH dehydrogenase (quinone) activity;8.70653815324009e-12!GO:0003954;NADH dehydrogenase activity;8.70653815324009e-12!GO:0008137;NADH dehydrogenase (ubiquinone) activity;8.70653815324009e-12!GO:0006323;DNA packaging;1.12089900003981e-11!GO:0006732;coenzyme metabolic process;1.37586122961205e-11!GO:0051276;chromosome organization and biogenesis;2.00991392719487e-11!GO:0031965;nuclear membrane;2.42830829624642e-11!GO:0009056;catabolic process;3.01685633099339e-11!GO:0016879;ligase activity, forming carbon-nitrogen bonds;3.13808467490648e-11!GO:0016881;acid-amino acid ligase activity;4.03845569565855e-11!GO:0007049;cell cycle;5.18304273033916e-11!GO:0050657;nucleic acid transport;5.74178213634156e-11!GO:0051236;establishment of RNA localization;5.74178213634156e-11!GO:0050658;RNA transport;5.74178213634156e-11!GO:0006403;RNA localization;7.46498742344033e-11!GO:0003743;translation initiation factor activity;1.0530314637414e-10!GO:0050789;regulation of biological process;1.15006520907029e-10!GO:0005643;nuclear pore;1.62158934333425e-10!GO:0005768;endosome;1.62378988936595e-10!GO:0005773;vacuole;1.64175995519613e-10!GO:0042775;organelle ATP synthesis coupled electron transport;1.71044714416084e-10!GO:0042773;ATP synthesis coupled electron transport;1.71044714416084e-10!GO:0004386;helicase activity;1.79008347714539e-10!GO:0043069;negative regulation of programmed cell death;2.06262425852523e-10!GO:0016651;oxidoreductase activity, acting on NADH or NADPH;2.06262425852523e-10!GO:0006461;protein complex assembly;2.1475761269647e-10!GO:0009719;response to endogenous stimulus;2.15045550151421e-10!GO:0006413;translational initiation;2.25026087697855e-10!GO:0005783;endoplasmic reticulum;2.55511776448498e-10!GO:0030964;NADH dehydrogenase complex (quinone);2.61794318250821e-10!GO:0045271;respiratory chain complex I;2.61794318250821e-10!GO:0005747;mitochondrial respiratory chain complex I;2.61794318250821e-10!GO:0043066;negative regulation of apoptosis;3.21521733728896e-10!GO:0005842;cytosolic large ribosomal subunit (sensu Eukaryota);3.40012043708574e-10!GO:0008026;ATP-dependent helicase activity;3.4802303524411e-10!GO:0019222;regulation of metabolic process;3.69378179989454e-10!GO:0005843;cytosolic small ribosomal subunit (sensu Eukaryota);3.78700210708497e-10!GO:0016568;chromatin modification;5.09556376657199e-10!GO:0044432;endoplasmic reticulum part;5.5034042734442e-10!GO:0006120;mitochondrial electron transport, NADH to ubiquinone;7.31833205258084e-10!GO:0005761;mitochondrial ribosome;1.14753782402177e-09!GO:0000313;organellar ribosome;1.14753782402177e-09!GO:0000323;lytic vacuole;1.40419249425247e-09!GO:0005764;lysosome;1.40419249425247e-09!GO:0007249;I-kappaB kinase/NF-kappaB cascade;1.47650008642784e-09!GO:0006446;regulation of translational initiation;1.55697421480263e-09!GO:0006399;tRNA metabolic process;1.80383705468677e-09!GO:0016591;DNA-directed RNA polymerase II, holoenzyme;1.8700578903433e-09!GO:0042254;ribosome biogenesis and assembly;2.95334933360849e-09!GO:0006916;anti-apoptosis;2.98559269215858e-09!GO:0015931;nucleobase, nucleoside, nucleotide and nucleic acid transport;3.15731160015653e-09!GO:0065002;intracellular protein transport across a membrane;3.35916550746558e-09!GO:0051028;mRNA transport;3.53629829800623e-09!GO:0046961;hydrogen ion transporting ATPase activity, rotational mechanism;4.13049842057194e-09!GO:0007264;small GTPase mediated signal transduction;4.26234532978714e-09!GO:0017038;protein import;5.06927060951828e-09!GO:0048475;coated membrane;6.96836151171299e-09!GO:0030117;membrane coat;6.96836151171299e-09!GO:0003924;GTPase activity;8.99388210349053e-09!GO:0006793;phosphorus metabolic process;9.19320550185042e-09!GO:0006796;phosphate metabolic process;9.19320550185042e-09!GO:0006366;transcription from RNA polymerase II promoter;9.71849287828614e-09!GO:0006888;ER to Golgi vesicle-mediated transport;9.96935740329551e-09!GO:0043122;regulation of I-kappaB kinase/NF-kappaB cascade;1.09675138628272e-08!GO:0046933;hydrogen ion transporting ATP synthase activity, rotational mechanism;1.37526445054069e-08!GO:0046930;pore complex;1.37526445054069e-08!GO:0051188;cofactor biosynthetic process;2.25438229762624e-08!GO:0043123;positive regulation of I-kappaB kinase/NF-kappaB cascade;2.39439029630968e-08!GO:0009259;ribonucleotide metabolic process;2.42153089306708e-08!GO:0030120;vesicle coat;2.61305962368473e-08!GO:0030662;coated vesicle membrane;2.61305962368473e-08!GO:0016787;hydrolase activity;2.72227082487654e-08!GO:0016876;ligase activity, forming aminoacyl-tRNA and related compounds;2.94763739710228e-08!GO:0004812;aminoacyl-tRNA ligase activity;2.94763739710228e-08!GO:0016875;ligase activity, forming carbon-oxygen bonds;2.94763739710228e-08!GO:0031323;regulation of cellular metabolic process;4.00813637418077e-08!GO:0015986;ATP synthesis coupled proton transport;4.93559735527445e-08!GO:0015985;energy coupled proton transport, down electrochemical gradient;4.93559735527445e-08!GO:0043038;amino acid activation;5.20370024554293e-08!GO:0006418;tRNA aminoacylation for protein translation;5.20370024554293e-08!GO:0043039;tRNA aminoacylation;5.20370024554293e-08!GO:0003713;transcription coactivator activity;5.32663000961258e-08!GO:0048523;negative regulation of cellular process;6.31156280215901e-08!GO:0019829;cation-transporting ATPase activity;6.54648103621392e-08!GO:0006163;purine nucleotide metabolic process;7.89386401100954e-08!GO:0009055;electron carrier activity;8.61940283760406e-08!GO:0009150;purine ribonucleotide metabolic process;8.64515674103761e-08!GO:0006350;transcription;1.086222698392e-07!GO:0022402;cell cycle process;1.2358089358979e-07!GO:0006333;chromatin assembly or disassembly;1.24542767495417e-07!GO:0005770;late endosome;1.39361564422871e-07!GO:0007243;protein kinase cascade;1.50269308672833e-07!GO:0044440;endosomal part;1.62590545219763e-07!GO:0010008;endosome membrane;1.62590545219763e-07!GO:0032446;protein modification by small protein conjugation;1.68138322835384e-07!GO:0009260;ribonucleotide biosynthetic process;1.84779005876904e-07!GO:0005839;proteasome core complex (sensu Eukaryota);1.94503485068168e-07!GO:0030532;small nuclear ribonucleoprotein complex;2.09057088012321e-07!GO:0006164;purine nucleotide biosynthetic process;2.13003219551355e-07!GO:0051246;regulation of protein metabolic process;2.16924158445275e-07!GO:0005694;chromosome;2.16924158445275e-07!GO:0009152;purine ribonucleotide biosynthetic process;2.2350042363842e-07!GO:0065004;protein-DNA complex assembly;2.40899122303999e-07!GO:0005525;GTP binding;2.59963075722777e-07!GO:0015078;hydrogen ion transmembrane transporter activity;2.91395540305651e-07!GO:0005798;Golgi-associated vesicle;2.98591259951198e-07!GO:0009199;ribonucleoside triphosphate metabolic process;3.08248289645418e-07!GO:0007242;intracellular signaling cascade;3.22157494129613e-07!GO:0042175;nuclear envelope-endoplasmic reticulum network;3.30519333014041e-07!GO:0005789;endoplasmic reticulum membrane;3.35058807649598e-07!GO:0009142;nucleoside triphosphate biosynthetic process;3.3512954079799e-07!GO:0009201;ribonucleoside triphosphate biosynthetic process;3.3512954079799e-07!GO:0016567;protein ubiquitination;3.45228438873226e-07!GO:0009205;purine ribonucleoside triphosphate metabolic process;3.55416736000356e-07!GO:0009144;purine nucleoside triphosphate metabolic process;3.55416736000356e-07!GO:0009206;purine ribonucleoside triphosphate biosynthetic process;3.81606770866463e-07!GO:0009145;purine nucleoside triphosphate biosynthetic process;3.81606770866463e-07!GO:0051168;nuclear export;4.05243545222125e-07!GO:0010468;regulation of gene expression;4.78087727327684e-07!GO:0051170;nuclear import;4.96127024486605e-07!GO:0043566;structure-specific DNA binding;5.514525479442e-07!GO:0016310;phosphorylation;5.53770555899778e-07!GO:0051726;regulation of cell cycle;8.39542265327422e-07!GO:0006754;ATP biosynthetic process;8.54562549089439e-07!GO:0006753;nucleoside phosphate metabolic process;8.54562549089439e-07!GO:0044431;Golgi apparatus part;8.85906071865236e-07!GO:0065007;biological regulation;9.65546357572454e-07!GO:0004298;threonine endopeptidase activity;9.65546357572454e-07!GO:0000074;regulation of progression through cell cycle;9.7120238457683e-07!GO:0009141;nucleoside triphosphate metabolic process;1.04857104276157e-06!GO:0000785;chromatin;1.06127397883408e-06!GO:0046034;ATP metabolic process;1.07037616994803e-06!GO:0000245;spliceosome assembly;1.07622953966666e-06!GO:0006606;protein import into nucleus;1.21903894022363e-06!GO:0009108;coenzyme biosynthetic process;1.22243602284516e-06!GO:0007005;mitochondrion organization and biogenesis;1.31451292925622e-06!GO:0003724;RNA helicase activity;1.32711394024492e-06!GO:0048519;negative regulation of biological process;1.54271309382151e-06!GO:0019219;regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;1.63740338196258e-06!GO:0006752;group transfer coenzyme metabolic process;1.83441122434613e-06!GO:0000151;ubiquitin ligase complex;2.11361210264749e-06!GO:0016469;proton-transporting two-sector ATPase complex;2.16608196336053e-06!GO:0016564;transcription repressor activity;2.26044816439988e-06!GO:0006364;rRNA processing;2.31520094228774e-06!GO:0016563;transcription activator activity;2.35416814427179e-06!GO:0003697;single-stranded DNA binding;2.67884518703038e-06!GO:0031202;RNA splicing factor activity, transesterification mechanism;2.95141109738274e-06!GO:0019899;enzyme binding;3.44972864116803e-06!GO:0051427;hormone receptor binding;3.50629624329499e-06!GO:0042613;MHC class II protein complex;3.57467032543821e-06!GO:0009060;aerobic respiration;4.20322297643728e-06!GO:0032561;guanyl ribonucleotide binding;4.4958778681153e-06!GO:0019001;guanyl nucleotide binding;4.4958778681153e-06!GO:0016072;rRNA metabolic process;5.04438288048502e-06!GO:0006260;DNA replication;5.55280579133188e-06!GO:0008270;zinc ion binding;5.90957390718404e-06!GO:0031982;vesicle;6.11195470552124e-06!GO:0005774;vacuolar membrane;6.31820864015196e-06!GO:0003714;transcription corepressor activity;6.62392015339497e-06!GO:0044427;chromosomal part;6.63060514872967e-06!GO:0031252;leading edge;6.72296382686086e-06!GO:0005793;ER-Golgi intermediate compartment;6.72410288849806e-06!GO:0031988;membrane-bound vesicle;7.55746718903281e-06!GO:0035257;nuclear hormone receptor binding;7.90988683162534e-06!GO:0032774;RNA biosynthetic process;8.2231242648987e-06!GO:0006351;transcription, DNA-dependent;9.01047694003397e-06!GO:0002504;antigen processing and presentation of peptide or polysaccharide antigen via MHC class II;9.48377313949623e-06!GO:0016772;transferase activity, transferring phosphorus-containing groups;1.00644507771184e-05!GO:0048471;perinuclear region of cytoplasm;1.07612384573546e-05!GO:0015405;P-P-bond-hydrolysis-driven transmembrane transporter activity;1.19854992099123e-05!GO:0015399;primary active transmembrane transporter activity;1.19854992099123e-05!GO:0016740;transferase activity;1.34457954625376e-05!GO:0031324;negative regulation of cellular metabolic process;1.44509437614327e-05!GO:0006613;cotranslational protein targeting to membrane;1.69471197966828e-05!GO:0007265;Ras protein signal transduction;1.74476249575466e-05!GO:0015077;monovalent inorganic cation transmembrane transporter activity;1.8193963373188e-05!GO:0005765;lysosomal membrane;1.87162456160658e-05!GO:0065009;regulation of a molecular function;1.87621366072071e-05!GO:0045333;cellular respiration;2.43170732100445e-05!GO:0016023;cytoplasmic membrane-bound vesicle;2.47844031596048e-05!GO:0045786;negative regulation of progression through cell cycle;2.60384121789646e-05!GO:0006402;mRNA catabolic process;2.61165447537604e-05!GO:0055086;nucleobase, nucleoside and nucleotide metabolic process;2.68850569081016e-05!GO:0045449;regulation of transcription;2.70423691162438e-05!GO:0031410;cytoplasmic vesicle;2.70423691162438e-05!GO:0051187;cofactor catabolic process;2.80670642422391e-05!GO:0044437;vacuolar part;2.94760308979953e-05!GO:0008186;RNA-dependent ATPase activity;3.28864805619655e-05!GO:0000278;mitotic cell cycle;4.11038478900112e-05!GO:0045259;proton-transporting ATP synthase complex;4.28357142834318e-05!GO:0016779;nucleotidyltransferase activity;4.51426777474641e-05!GO:0006099;tricarboxylic acid cycle;4.84752715791186e-05!GO:0046356;acetyl-CoA catabolic process;4.84752715791186e-05!GO:0006401;RNA catabolic process;5.49803372517558e-05!GO:0045934;negative regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;5.67429475607103e-05!GO:0043065;positive regulation of apoptosis;6.38537572383919e-05!GO:0005813;centrosome;7.84092938290032e-05!GO:0006917;induction of apoptosis;8.47068606073424e-05!GO:0043623;cellular protein complex assembly;8.47068606073424e-05!GO:0043068;positive regulation of programmed cell death;8.5041505345122e-05!GO:0009967;positive regulation of signal transduction;8.86449548811347e-05!GO:0009892;negative regulation of metabolic process;9.63101898926012e-05!GO:0006084;acetyl-CoA metabolic process;9.72534168407586e-05!GO:0006612;protein targeting to membrane;0.000102107861182688!GO:0004004;ATP-dependent RNA helicase activity;0.000105795453403937!GO:0031902;late endosome membrane;0.000110128310815986!GO:0048468;cell development;0.000115217909169174!GO:0005083;small GTPase regulator activity;0.000115756847575262!GO:0012502;induction of programmed cell death;0.000128864213514503!GO:0048522;positive regulation of cellular process;0.000129050402185554!GO:0042625;ATPase activity, coupled to transmembrane movement of ions;0.000130713623124977!GO:0009109;coenzyme catabolic process;0.000134333150990194!GO:0016481;negative regulation of transcription;0.000139670386794556!GO:0009117;nucleotide metabolic process;0.000145946047974594!GO:0005852;eukaryotic translation initiation factor 3 complex;0.000148170237354469!GO:0005885;Arp2/3 protein complex;0.000148448507477387!GO:0000139;Golgi membrane;0.000154791128710896!GO:0051789;response to protein stimulus;0.000156843936006365!GO:0006986;response to unfolded protein;0.000156843936006365!GO:0008654;phospholipid biosynthetic process;0.000160383549262304!GO:0046914;transition metal ion binding;0.00018502737828034!GO:0016197;endosome transport;0.000204414245060876!GO:0006334;nucleosome assembly;0.000206919520002625!GO:0015630;microtubule cytoskeleton;0.000211024048656!GO:0006355;regulation of transcription, DNA-dependent;0.000219743239021536!GO:0043492;ATPase activity, coupled to movement of substances;0.000227879033868696!GO:0030658;transport vesicle membrane;0.000232084324533778!GO:0031497;chromatin assembly;0.000250964725364716!GO:0006891;intra-Golgi vesicle-mediated transport;0.000256892887785252!GO:0043021;ribonucleoprotein binding;0.000269852792467458!GO:0030118;clathrin coat;0.00028223241024392!GO:0042626;ATPase activity, coupled to transmembrane movement of substances;0.00029478661060551!GO:0005815;microtubule organizing center;0.000309429045061031!GO:0008234;cysteine-type peptidase activity;0.000310004352535882!GO:0005769;early endosome;0.000310004352535882!GO:0003729;mRNA binding;0.000315052160782977!GO:0016820;hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances;0.000320362874567103!GO:0001726;ruffle;0.000341921564686165!GO:0031072;heat shock protein binding;0.00042794021469374!GO:0006417;regulation of translation;0.00051134275056198!GO:0030695;GTPase regulator activity;0.00052969525498826!GO:0032395;MHC class II receptor activity;0.000550676614281694!GO:0005048;signal sequence binding;0.000570067227446613!GO:0046966;thyroid hormone receptor binding;0.000599038607929708!GO:0030521;androgen receptor signaling pathway;0.000611477313114723!GO:0003690;double-stranded DNA binding;0.000691713985799333!GO:0030530;heterogeneous nuclear ribonucleoprotein complex;0.000722090516573864!GO:0009966;regulation of signal transduction;0.000803621844002319!GO:0042802;identical protein binding;0.000807206199074474!GO:0030133;transport vesicle;0.00084418830270154!GO:0005667;transcription factor complex;0.000855185742144179!GO:0016044;membrane organization and biogenesis;0.000863120950382625!GO:0045454;cell redox homeostasis;0.000863120950382625!GO:0030660;Golgi-associated vesicle membrane;0.00087460658524605!GO:0005762;mitochondrial large ribosomal subunit;0.000890642873117155!GO:0000315;organellar large ribosomal subunit;0.000890642873117155!GO:0030384;phosphoinositide metabolic process;0.000905919845058402!GO:0006357;regulation of transcription from RNA polymerase II promoter;0.000954678209355005!GO:0045261;proton-transporting ATP synthase complex, catalytic core F(1);0.0009680018182136!GO:0007034;vacuolar transport;0.000982887861735659!GO:0000209;protein polyubiquitination;0.00102006136466366!GO:0033178;proton-transporting two-sector ATPase complex, catalytic domain;0.00102374566961266!GO:0004674;protein serine/threonine kinase activity;0.00106238149612565!GO:0005741;mitochondrial outer membrane;0.00106506497231399!GO:0016853;isomerase activity;0.0010693298503196!GO:0015631;tubulin binding;0.00112150495693895!GO:0005788;endoplasmic reticulum lumen;0.00113855878219447!GO:0016251;general RNA polymerase II transcription factor activity;0.00117439482949346!GO:0006338;chromatin remodeling;0.00118921678202192!GO:0016363;nuclear matrix;0.00122290209055894!GO:0043087;regulation of GTPase activity;0.00125544807734175!GO:0030134;ER to Golgi transport vesicle;0.00125544807734175!GO:0006405;RNA export from nucleus;0.00125669574857282!GO:0005838;proteasome regulatory particle (sensu Eukaryota);0.00125669574857282!GO:0003899;DNA-directed RNA polymerase activity;0.00131437321148973!GO:0051252;regulation of RNA metabolic process;0.00135004725485933!GO:0006310;DNA recombination;0.00136065928844764!GO:0005637;nuclear inner membrane;0.00138486746993324!GO:0006818;hydrogen transport;0.00144203980514745!GO:0003755;peptidyl-prolyl cis-trans isomerase activity;0.00150155098833119!GO:0006650;glycerophospholipid metabolic process;0.00152255891033392!GO:0006352;transcription initiation;0.00161713413742877!GO:0030518;steroid hormone receptor signaling pathway;0.00164430529798397!GO:0022406;membrane docking;0.00165022488724011!GO:0048278;vesicle docking;0.00165022488724011!GO:0015992;proton transport;0.00165579107162875!GO:0006611;protein export from nucleus;0.00173584668143602!GO:0030663;COPI coated vesicle membrane;0.00176106777742089!GO:0030126;COPI vesicle coat;0.00176106777742089!GO:0042611;MHC protein complex;0.00177290685529731!GO:0016859;cis-trans isomerase activity;0.00180357358746035!GO:0022403;cell cycle phase;0.00182134682663587!GO:0035258;steroid hormone receptor binding;0.00183553870155073!GO:0005099;Ras GTPase activator activity;0.00185135224971686!GO:0031968;organelle outer membrane;0.00194677848034858!GO:0006289;nucleotide-excision repair;0.00194854985803416!GO:0012506;vesicle membrane;0.00194854985803416!GO:0003682;chromatin binding;0.00197180951430137!GO:0030127;COPII vesicle coat;0.00202657461446061!GO:0012507;ER to Golgi transport vesicle membrane;0.00202657461446061!GO:0006302;double-strand break repair;0.00213011332611671!GO:0009165;nucleotide biosynthetic process;0.00221556055137779!GO:0030119;AP-type membrane coat adaptor complex;0.00229997772027515!GO:0000059;protein import into nucleus, docking;0.00229997772027515!GO:0030659;cytoplasmic vesicle membrane;0.00238443702916946!GO:0008139;nuclear localization sequence binding;0.0025015275596425!GO:0006261;DNA-dependent DNA replication;0.00252483971295066!GO:0019867;outer membrane;0.00252483971295066!GO:0008632;apoptotic program;0.00254971286520714!GO:0030137;COPI-coated vesicle;0.002563647657787!GO:0048500;signal recognition particle;0.00257951386831299!GO:0031326;regulation of cellular biosynthetic process;0.00259023791976066!GO:0005684;U2-dependent spliceosome;0.00260436097058625!GO:0050790;regulation of catalytic activity;0.00265091979557869!GO:0030867;rough endoplasmic reticulum membrane;0.00276905695849894!GO:0046489;phosphoinositide biosynthetic process;0.00276905695849894!GO:0016126;sterol biosynthetic process;0.00281035753570456!GO:0030131;clathrin adaptor complex;0.00282340717504044!GO:0008637;apoptotic mitochondrial changes;0.0028372556564881!GO:0006626;protein targeting to mitochondrion;0.00284514203074393!GO:0005753;mitochondrial proton-transporting ATP synthase complex;0.00288548333463151!GO:0006904;vesicle docking during exocytosis;0.00289574522616571!GO:0007050;cell cycle arrest;0.00293355109343413!GO:0045045;secretory pathway;0.00294747194036733!GO:0008033;tRNA processing;0.00297790641232837!GO:0051087;chaperone binding;0.00299308690258759!GO:0019783;small conjugating protein-specific protease activity;0.00314288151142212!GO:0003711;transcription elongation regulator activity;0.00314579759138706!GO:0003677;DNA binding;0.00315077157306769!GO:0004843;ubiquitin-specific protease activity;0.003195289147257!GO:0000087;M phase of mitotic cell cycle;0.00319565519086913!GO:0006383;transcription from RNA polymerase III promoter;0.0032534392851084!GO:0046483;heterocycle metabolic process;0.00336511899327307!GO:0045892;negative regulation of transcription, DNA-dependent;0.00338391991514005!GO:0008287;protein serine/threonine phosphatase complex;0.0034017474220988!GO:0030258;lipid modification;0.0034017474220988!GO:0016491;oxidoreductase activity;0.00340472915490046!GO:0048487;beta-tubulin binding;0.00352146800267024!GO:0003678;DNA helicase activity;0.00388154950282367!GO:0008320;protein transmembrane transporter activity;0.00390189727101761!GO:0007067;mitosis;0.00391646462016749!GO:0000184;mRNA catabolic process, nonsense-mediated decay;0.004039752997049!GO:0030036;actin cytoskeleton organization and biogenesis;0.00408365629657916!GO:0006890;retrograde vesicle-mediated transport, Golgi to ER;0.00414049151960955!GO:0043681;protein import into mitochondrion;0.00430296715273492!GO:0016679;oxidoreductase activity, acting on diphenols and related substances as donors;0.00431610752535756!GO:0016681;oxidoreductase activity, acting on diphenols and related substances as donors, cytochrome as acceptor;0.00431610752535756!GO:0008121;ubiquinol-cytochrome-c reductase activity;0.00431610752535756!GO:0002474;antigen processing and presentation of peptide antigen via MHC class I;0.004592000534588!GO:0046578;regulation of Ras protein signal transduction;0.00470264636355767!GO:0000287;magnesium ion binding;0.00478980718695681!GO:0006091;generation of precursor metabolites and energy;0.00483048639972073!GO:0007041;lysosomal transport;0.0050314586673718!GO:0004221;ubiquitin thiolesterase activity;0.00504504507659648!GO:0006614;SRP-dependent cotranslational protein targeting to membrane;0.00534933859004167!GO:0045047;protein targeting to ER;0.00534933859004167!GO:0006414;translational elongation;0.00548309082488859!GO:0016311;dephosphorylation;0.00552985772416647!GO:0046467;membrane lipid biosynthetic process;0.00564240761711725!GO:0007006;mitochondrial membrane organization and biogenesis;0.00571988274900118!GO:0048518;positive regulation of biological process;0.00579572357993462!GO:0006839;mitochondrial transport;0.00584030658036305!GO:0044433;cytoplasmic vesicle part;0.00590650720669628!GO:0046474;glycerophospholipid biosynthetic process;0.00603299643527321!GO:0016790;thiolester hydrolase activity;0.00655045481712639!GO:0051052;regulation of DNA metabolic process;0.00658920947296219!GO:0008047;enzyme activator activity;0.0066982484711232!GO:0005786;signal recognition particle, endoplasmic reticulum targeting;0.00706747849447692!GO:0006778;porphyrin metabolic process;0.00725433162300134!GO:0033013;tetrapyrrole metabolic process;0.00725433162300134!GO:0019882;antigen processing and presentation;0.00725669884278478!GO:0006672;ceramide metabolic process;0.00731075304679797!GO:0005777;peroxisome;0.00733359182961038!GO:0042579;microbody;0.00733359182961038!GO:0030029;actin filament-based process;0.00755056718484604!GO:0045767;regulation of anti-apoptosis;0.00759755941275834!GO:0046519;sphingoid metabolic process;0.00776731209646389!GO:0032318;regulation of Ras GTPase activity;0.00776731209646389!GO:0051920;peroxiredoxin activity;0.00787184667306249!GO:0006607;NLS-bearing substrate import into nucleus;0.00802239660553696!GO:0051329;interphase of mitotic cell cycle;0.0081070764157379!GO:0019752;carboxylic acid metabolic process;0.0082842067684543!GO:0008022;protein C-terminus binding;0.00840183885661966!GO:0051059;NF-kappaB binding;0.00850426585051771!GO:0042168;heme metabolic process;0.00864901965607135!GO:0031625;ubiquitin protein ligase binding;0.00877308995467556!GO:0044262;cellular carbohydrate metabolic process;0.0092195249813296!GO:0050662;coenzyme binding;0.0092195249813296!GO:0007021;tubulin folding;0.0092195249813296!GO:0030125;clathrin vesicle coat;0.0092195249813296!GO:0030665;clathrin coated vesicle membrane;0.0092195249813296!GO:0032940;secretion by cell;0.0092195249813296!GO:0030880;RNA polymerase complex;0.00925688656457978!GO:0006082;organic acid metabolic process;0.00927307206133704!GO:0008312;7S RNA binding;0.00931086083451838!GO:0006376;mRNA splice site selection;0.00931086083451838!GO:0000389;nuclear mRNA 3'-splice site recognition;0.00931086083451838!GO:0005096;GTPase activator activity;0.00963599705974541!GO:0051056;regulation of small GTPase mediated signal transduction;0.00965923989717688!GO:0008094;DNA-dependent ATPase activity;0.00996223867893356!GO:0006740;NADPH regeneration;0.0102894238615553!GO:0006098;pentose-phosphate shunt;0.0102894238615553!GO:0030176;integral to endoplasmic reticulum membrane;0.0105838088714158!GO:0006695;cholesterol biosynthetic process;0.0107132961445365!GO:0030041;actin filament polymerization;0.0108791137669437!GO:0051325;interphase;0.0109107456980452!GO:0008610;lipid biosynthetic process;0.0109983894146417!GO:0009889;regulation of biosynthetic process;0.01103332626695!GO:0006635;fatty acid beta-oxidation;0.0110411875288002!GO:0004003;ATP-dependent DNA helicase activity;0.0114788246138285!GO:0007040;lysosome organization and biogenesis;0.0116826983662701!GO:0030522;intracellular receptor-mediated signaling pathway;0.0118831439908184!GO:0051336;regulation of hydrolase activity;0.0120412466272501!GO:0050811;GABA receptor binding;0.0120490747195574!GO:0044452;nucleolar part;0.0121056942235538!GO:0016791;phosphoric monoester hydrolase activity;0.01216696714634!GO:0031124;mRNA 3'-end processing;0.0124031758126005!GO:0033116;ER-Golgi intermediate compartment membrane;0.0125635470291041!GO:0016272;prefoldin complex;0.0126854208862488!GO:0004527;exonuclease activity;0.0127320534356594!GO:0005665;DNA-directed RNA polymerase II, core complex;0.0127549779168306!GO:0015980;energy derivation by oxidation of organic compounds;0.0128053744848099!GO:0043488;regulation of mRNA stability;0.0131630879608202!GO:0043487;regulation of RNA stability;0.0131630879608202!GO:0045935;positive regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;0.0131642619978782!GO:0016301;kinase activity;0.013470260673514!GO:0022890;inorganic cation transmembrane transporter activity;0.0135717049258533!GO:0031123;RNA 3'-end processing;0.0136737325662546!GO:0030433;ER-associated protein catabolic process;0.0139776393804169!GO:0006515;misfolded or incompletely synthesized protein catabolic process;0.0139776393804169!GO:0008017;microtubule binding;0.0143538719540363!GO:0043161;proteasomal ubiquitin-dependent protein catabolic process;0.0143605879338597!GO:0005869;dynactin complex;0.0144305491381247!GO:0031529;ruffle organization and biogenesis;0.0144378123964839!GO:0051301;cell division;0.0145334489134184!GO:0044438;microbody part;0.0145839963737243!GO:0044439;peroxisomal part;0.0145839963737243!GO:0008629;induction of apoptosis by intracellular signals;0.014586829902083!GO:0000049;tRNA binding;0.0146428857229719!GO:0008250;oligosaccharyl transferase complex;0.0146602151689682!GO:0016584;nucleosome positioning;0.0148191505647092!GO:0001891;phagocytic cup;0.0148775913115408!GO:0006643;membrane lipid metabolic process;0.015072656859386!GO:0016627;oxidoreductase activity, acting on the CH-CH group of donors;0.0151608016837922!GO:0006979;response to oxidative stress;0.0152349639693133!GO:0046983;protein dimerization activity;0.0153442137365405!GO:0000314;organellar small ribosomal subunit;0.0153786154388084!GO:0005763;mitochondrial small ribosomal subunit;0.0153786154388084!GO:0005669;transcription factor TFIID complex;0.0154415036804902!GO:0055029;nuclear DNA-directed RNA polymerase complex;0.0157562025997929!GO:0000428;DNA-directed RNA polymerase complex;0.0157562025997929!GO:0006497;protein amino acid lipidation;0.0163931266810292!GO:0051098;regulation of binding;0.0163931266810292!GO:0016407;acetyltransferase activity;0.0165222429269668!GO:0045893;positive regulation of transcription, DNA-dependent;0.0166379523670283!GO:0045941;positive regulation of transcription;0.0168016061407026!GO:0047485;protein N-terminus binding;0.0170181248009689!GO:0051101;regulation of DNA binding;0.0172233145077283!GO:0006368;RNA elongation from RNA polymerase II promoter;0.0174215283931069!GO:0040029;regulation of gene expression, epigenetic;0.0178507360772104!GO:0005905;coated pit;0.0179444587667639!GO:0008092;cytoskeletal protein binding;0.0179444587667639!GO:0006769;nicotinamide metabolic process;0.0183260329058982!GO:0050681;androgen receptor binding;0.0183260329058982!GO:0004579;dolichyl-diphosphooligosaccharide-protein glycotransferase activity;0.019659081951211!GO:0032200;telomere organization and biogenesis;0.0200128230346288!GO:0000723;telomere maintenance;0.0200128230346288!GO:0046365;monosaccharide catabolic process;0.0207853535230885!GO:0006007;glucose catabolic process;0.0208758224224944!GO:0004576;oligosaccharyl transferase activity;0.0209388312711593!GO:0030140;trans-Golgi network transport vesicle;0.0210008429843353!GO:0018193;peptidyl-amino acid modification;0.0210104995875931!GO:0030132;clathrin coat of coated pit;0.0212020474479019!GO:0004437;inositol or phosphatidylinositol phosphatase activity;0.0213079843484188!GO:0042158;lipoprotein biosynthetic process;0.0218857954533019!GO:0016281;eukaryotic translation initiation factor 4F complex;0.0220160304324364!GO:0051287;NAD binding;0.0221322299111929!GO:0006406;mRNA export from nucleus;0.0222737366274634!GO:0031903;microbody membrane;0.0222769668537753!GO:0005778;peroxisomal membrane;0.0222769668537753!GO:0003684;damaged DNA binding;0.0224055141370057!GO:0005791;rough endoplasmic reticulum;0.0226140619462386!GO:0004860;protein kinase inhibitor activity;0.0230201488768434!GO:0004518;nuclease activity;0.0230890048193327!GO:0006367;transcription initiation from RNA polymerase II promoter;0.023279183049208!GO:0000118;histone deacetylase complex;0.0238143048762842!GO:0004177;aminopeptidase activity;0.0244193306813926!GO:0016788;hydrolase activity, acting on ester bonds;0.0245691920515134!GO:0006739;NADP metabolic process;0.0248784842042547!GO:0008538;proteasome activator activity;0.0252207006305257!GO:0042809;vitamin D receptor binding;0.0254901454601562!GO:0043621;protein self-association;0.0254931776254956!GO:0000119;mediator complex;0.025561162656558!GO:0043414;biopolymer methylation;0.0255932142584589!GO:0000279;M phase;0.0257747683826408!GO:0000122;negative regulation of transcription from RNA polymerase II promoter;0.0257747683826408!GO:0019318;hexose metabolic process;0.0262842768353472!GO:0005832;chaperonin-containing T-complex;0.0262907691807729!GO:0042771;DNA damage response, signal transduction by p53 class mediator resulting in induction of apoptosis;0.026376145144736!GO:0005097;Rab GTPase activator activity;0.0264130481221779!GO:0022884;macromolecule transmembrane transporter activity;0.0264350719501167!GO:0015450;P-P-bond-hydrolysis-driven protein transmembrane transporter activity;0.0264350719501167!GO:0005819;spindle;0.0264551377156055!GO:0015923;mannosidase activity;0.0265662733623502!GO:0043022;ribosome binding;0.0266874806293626!GO:0018196;peptidyl-asparagine modification;0.0267564250435172!GO:0018279;protein amino acid N-linked glycosylation via asparagine;0.0267564250435172!GO:0009615;response to virus;0.0268638804769089!GO:0007033;vacuole organization and biogenesis;0.027359733235988!GO:0046164;alcohol catabolic process;0.0279368136131101!GO:0006661;phosphatidylinositol biosynthetic process;0.0280535172457181!GO:0016780;phosphotransferase activity, for other substituted phosphate groups;0.0287003358743163!GO:0000786;nucleosome;0.0287003358743163!GO:0003746;translation elongation factor activity;0.0287304067348204!GO:0019320;hexose catabolic process;0.0289549252312556!GO:0030374;ligand-dependent nuclear receptor transcription coactivator activity;0.0290298721509253!GO:0005996;monosaccharide metabolic process;0.0293819197211184!GO:0046979;TAP2 binding;0.0296203357367688!GO:0046977;TAP binding;0.0296203357367688!GO:0046978;TAP1 binding;0.0296203357367688!GO:0006779;porphyrin biosynthetic process;0.0298029483425742!GO:0033014;tetrapyrrole biosynthetic process;0.0298029483425742!GO:0016601;Rac protein signal transduction;0.0299563040180392!GO:0042824;MHC class I peptide loading complex;0.0302701532174676!GO:0045263;proton-transporting ATP synthase complex, coupling factor F(o);0.0307142768940979!GO:0033177;proton-transporting two-sector ATPase complex, proton-transporting domain;0.0307142768940979!GO:0000726;non-recombinational repair;0.0310592556866499!GO:0004721;phosphoprotein phosphatase activity;0.0310725973528397!GO:0046426;negative regulation of JAK-STAT cascade;0.0312939120309018!GO:0043130;ubiquitin binding;0.0314275833435909!GO:0032182;small conjugating protein binding;0.0314275833435909!GO:0045815;positive regulation of gene expression, epigenetic;0.0314519636019058!GO:0030330;DNA damage response, signal transduction by p53 class mediator;0.0320249253897987!GO:0019362;pyridine nucleotide metabolic process;0.0321586619043695!GO:0031301;integral to organelle membrane;0.032164323331526!GO:0032313;regulation of Rab GTPase activity;0.032164323331526!GO:0032483;regulation of Rab protein signal transduction;0.032164323331526!GO:0032482;Rab protein signal transduction;0.032164323331526!GO:0006520;amino acid metabolic process;0.0332978073770089!GO:0033673;negative regulation of kinase activity;0.0337254806440648!GO:0006469;negative regulation of protein kinase activity;0.0337254806440648!GO:0004300;enoyl-CoA hydratase activity;0.0338006072392733!GO:0000075;cell cycle checkpoint;0.0338082019694345!GO:0000018;regulation of DNA recombination;0.0348364306911841!GO:0031901;early endosome membrane;0.0350098297035805!GO:0046822;regulation of nucleocytoplasmic transport;0.0352114632589106!GO:0006378;mRNA polyadenylation;0.035690077172445!GO:0045736;negative regulation of cyclin-dependent protein kinase activity;0.036082242002821!GO:0051090;regulation of transcription factor activity;0.0361334880698896!GO:0045920;negative regulation of exocytosis;0.0363941077782315!GO:0043301;negative regulation of leukocyte degranulation;0.0363941077782315!GO:0043305;negative regulation of mast cell degranulation;0.0363941077782315!GO:0043433;negative regulation of transcription factor activity;0.0365630035400134!GO:0006783;heme biosynthetic process;0.0365630035400134!GO:0000152;nuclear ubiquitin ligase complex;0.0369025667893467!GO:0030865;cortical cytoskeleton organization and biogenesis;0.0369025667893467!GO:0030503;regulation of cell redox homeostasis;0.0372739410735557!GO:0051235;maintenance of localization;0.0375945798604173!GO:0019377;glycolipid catabolic process;0.0378581442557394!GO:0031371;ubiquitin conjugating enzyme complex;0.0379140555948616!GO:0016667;oxidoreductase activity, acting on sulfur group of donors;0.038095470702235!GO:0003725;double-stranded RNA binding;0.0381605455808072!GO:0030911;TPR domain binding;0.0382555366902371!GO:0019843;rRNA binding;0.0389953914769398!GO:0005874;microtubule;0.0391487212611513!GO:0006354;RNA elongation;0.0393367091880469!GO:0006950;response to stress;0.0394483449226734!GO:0043071;positive regulation of non-apoptotic programmed cell death;0.0394483449226734!GO:0006470;protein amino acid dephosphorylation;0.0395900786788518!GO:0016741;transferase activity, transferring one-carbon groups;0.0402524756993478!GO:0008168;methyltransferase activity;0.0402524756993478!GO:0000738;DNA catabolic process, exonucleolytic;0.0405462973106425!GO:0042585;germinal vesicle;0.0419630593436444!GO:0016773;phosphotransferase activity, alcohol group as acceptor;0.0422572725675053!GO:0006543;glutamine catabolic process;0.0427769375309074!GO:0006733;oxidoreduction coenzyme metabolic process;0.0427769375309074!GO:0004197;cysteine-type endopeptidase activity;0.0428826079621657!GO:0019210;kinase inhibitor activity;0.0438968813843338!GO:0005784;translocon complex;0.0441686418115859!GO:0000781;chromosome, telomeric region;0.0451348407005651!GO:0016676;oxidoreductase activity, acting on heme group of donors, oxygen as acceptor;0.0451348407005651!GO:0015002;heme-copper terminal oxidase activity;0.0451348407005651!GO:0016675;oxidoreductase activity, acting on heme group of donors;0.0451348407005651!GO:0004129;cytochrome-c oxidase activity;0.0451348407005651!GO:0016585;chromatin remodeling complex;0.0464037404190698!GO:0051539;4 iron, 4 sulfur cluster binding;0.0466613561208104!GO:0001836;release of cytochrome c from mitochondria;0.0468268212799707!GO:0007004;telomere maintenance via telomerase;0.0468311734496337!GO:0042288;MHC class I protein binding;0.0474955830023136!GO:0022411;cellular component disassembly;0.0482410392188631!GO:0005657;replication fork;0.0485646640066478!GO:0051348;negative regulation of transferase activity;0.048814400141297!GO:0008276;protein methyltransferase activity;0.0489190177842614
+|sample_id=11902
+|sample_note=
+|sample_sex=
+|sample_species=Human (Homo sapiens)
+|sample_strain=
+|sample_tissue=
+|top_motifs=FOX{F1,F2,J1}:2.11912514691;HSF1,2:1.86867766768;NFKB1_REL_RELA:1.42773237227;TLX2:1.34860115029;FOXP3:1.31714257941;FOXA2:1.0524641118;FOXN1:1.05221812718;SPZ1:1.02415817948;CDX1,2,4:0.983811093108;SREBF1,2:0.92276189151;RUNX1..3:0.865054945317;POU1F1:0.826297836974;PAX6:0.814755211148;NFIX:0.809752064974;ATF5_CREB3:0.802327217886;STAT5{A,B}:0.76243402151;OCT4_SOX2{dimer}:0.735691071556;ATF2:0.715372851337;EVI1:0.689842923108;CRX:0.652620937206;STAT1,3:0.624680708232;IRF1,2:0.601378402736;NANOG{mouse}:0.597618846471;HMX1:0.547698874129;BPTF:0.541637412709;SPI1:0.53479718905;FOSL2:0.478038314971;GLI1..3:0.474809800264;ESR1:0.461016891131;PAX2:0.452225234606;ESRRA:0.445841320276;DMAP1_NCOR{1,2}_SMARC:0.442195363254;RORA:0.438074687539;ARID5B:0.422820240503;NFE2L2:0.413490705292;HOXA9_MEIS1:0.408438448698;ZNF148:0.396427907128;ELF1,2,4:0.332430385154;PRRX1,2:0.318923327677;FOXQ1:0.317153333956;ZBTB16:0.314194027045;NFE2:0.302616583118;SPIB:0.297208911799;RFX2..5_RFXANK_RFXAP:0.283097437128;HNF4A_NR2F1,2:0.247053471338;PDX1:0.240967826934;CUX2:0.227186783672;SRF:0.220981179517;NKX2-2,8:0.208093366735;AHR_ARNT_ARNT2:0.197055175108;NKX6-1,2:0.195251176244;LMO2:0.192296270928;NR5A1,2:0.172799179152;JUN:0.172344634439;IKZF2:0.168266083763;EP300:0.159047984224;ETS1,2:0.153142151885;FOX{D1,D2}:0.143158492495;LHX3,4:0.13067734128;HAND1,2:0.117929105535;ATF4:0.0998016819886;GATA6:0.0979397233002;TGIF1:0.0934463714812;SNAI1..3:0.0921174252838;TFCP2:0.0902806242142;NFE2L1:0.0711071769833;HMGA1,2:0.0696667744339;BACH2:0.0632624859365;NANOG:0.0487020033057;ZEB1:0.0321808127267;MYB:0.0164972613693;POU3F1..4:-0.0107409976278;SOX2:-0.0175914574477;ALX4:-0.0255881929362;HOX{A6,A7,B6,B7}:-0.0385550985313;SOX5:-0.0417766992761;RXR{A,B,G}_{NR1H2,PPAR}dimers:-0.045258672492;RXRA_VDR{dimer}:-0.0480429518305;ALX1:-0.0575514385926;CREB1:-0.074701828102;YY1:-0.0786596516068;ELK1,4_GABP{A,B1}:-0.0882803183824;NFY{A,B,C}:-0.0896125987243;AR:-0.100301779303;MYFfamily:-0.112552187167;ZFP161:-0.118034982975;SP1:-0.124870721616;ZNF238:-0.12521051949;SOX17:-0.149312709349;POU2F1..3:-0.1496441849;HNF1A:-0.199073227866;IRF7:-0.2008376394;STAT2,4,6:-0.207264305546;PBX1:-0.208702375494;MAZ:-0.216323294177;PAX4:-0.22648379633;FOS_FOS{B,L1}_JUN{B,D}:-0.231496752237;FOXM1:-0.236143338896;NKX2-3_NKX2-5:-0.238341639504;TAL1_TCF{3,4,12}:-0.269757922227;MYOD1:-0.282304413273;TP53:-0.291982087721;ONECUT1,2:-0.30638562061;NRF1:-0.312102625897;MEF2{A,B,C,D}:-0.318753305278;XCPE1{core}:-0.330774980779;MTE{core}:-0.333849149137;ZNF143:-0.337825392248;NFIL3:-0.348759973864;MAFB:-0.349055269339;PAX8:-0.384348138442;ATF6:-0.389040811355;LEF1_TCF7_TCF7L1,2:-0.397039916547;SMAD1..7,9:-0.406461470765;MED-1{core}:-0.416189390335;VSX1,2:-0.41968791781;NHLH1,2:-0.427601477613;BREu{core}:-0.446777883088;GFI1B:-0.451450309693;AIRE:-0.470357617122;NFATC1..3:-0.487363661335;POU5F1:-0.494785484829;RFX1:-0.497107304981;NR1H4:-0.49869780464;HLF:-0.509295571811;MYBL2:-0.512031672503;HBP1_HMGB_SSRP1_UBTF:-0.513524615336;NR6A1:-0.522261910166;NKX3-1:-0.538670335008;TBP:-0.555091206865;FOXO1,3,4:-0.561859817324;EGR1..3:-0.5651224926;FOXP1:-0.566449957435;TFAP4:-0.56984136571;ZIC1..3:-0.589111230235;FOX{I1,J2}:-0.593950985805;TBX4,5:-0.635184735644;TFDP1:-0.635841055338;E2F1..5:-0.650436414963;CEBPA,B_DDIT3:-0.654219379502;EN1,2:-0.660982052007;HOX{A5,B5}:-0.661138764673;MTF1:-0.667259352671;UFEwm:-0.684260846937;HOX{A4,D4}:-0.696666994341;NKX3-2:-0.69771508232;EBF1:-0.723074559552;ZBTB6:-0.725565475443;PAX5:-0.746021719344;TFAP2{A,C}:-0.755578690007;XBP1:-0.766031400019;PAX3,7:-0.783271853731;TFAP2B:-0.797993301298;NR3C1:-0.807621632702;HES1:-0.829920382;CDC5L:-0.851433407549;GATA4:-0.872191630023;SOX{8,9,10}:-0.879714939402;HIC1:-0.885626358388;TEAD1:-0.895112479255;GTF2A1,2:-0.901895838423;GZF1:-0.912601840659;MZF1:-0.921182233234;TLX1..3_NFIC{dimer}:-0.928608762784;HIF1A:-0.956420840255;RBPJ:-0.978392659974;ADNP_IRX_SIX_ZHX:-0.984617887559;PITX1..3:-0.995887254762;GFI1:-1.05088748461;TEF:-1.07990707506;IKZF1:-1.11239454767;NKX2-1,4:-1.12612238537;PATZ1:-1.14735102096;ZNF423:-1.1729079934;RREB1:-1.17455527995;GTF2I:-1.18260636138;TOPORS:-1.19293812844;REST:-1.20570283964;PPARG:-1.21601039574;KLF4:-1.22627063799;POU6F1:-1.30337124901;PRDM1:-1.3655153905;T:-1.42189206117;bHLH_family:-1.43241432493;ZNF384:-1.54125004232;GCM1,2:-1.55184430285;PAX1,9:-1.64485073464;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:-1.64504483991;FOXL1:-1.77405316785;DBP:-1.78902363047;RXR{A,B,G}:-1.86713315567;FOXD3:-2.00700519208
+|xref=
+|zenbu_report=https://fantom.gsc.riken.jp/zenbu/reports/#miRNA_expression_atlas_human;search_select_hide=table111:FF:11902-125F3;search_select_hide=table117:FF:11902-125F3
 }}

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FF:11902-125F3: Difference between revisions

From FANTOM5_SSTAR

Latest revision as of 18:28, 4 June 2020

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	Mozilla Cavendish skin modified by DaSch for the Web Community Wiki GitHub project page – Report a bug – Skin version: 2.6.0