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{{f5samples
{{f5samples
|DRA_sample_Accession=CAGE@SAMD00005551
|accession_numbers=CAGE;DRX008325;DRR009197;DRZ000622;DRZ002007;DRZ011972;DRZ013357
|ancestors_in_anatomy_facet=UBERON:0000468,UBERON:0010314,UBERON:0011216,UBERON:0000062,UBERON:0000061,UBERON:0000465,UBERON:0000477,UBERON:0000467,UBERON:0001062,UBERON:0000480,UBERON:0000075,UBERON:0004765,UBERON:0001708,UBERON:0011159,UBERON:0002204,UBERON:0001434,UBERON:0008895,UBERON:0011137,UBERON:0010323
|ancestors_in_anatomy_facet=UBERON:0000468,UBERON:0010314,UBERON:0011216,UBERON:0000062,UBERON:0000061,UBERON:0000465,UBERON:0000477,UBERON:0000467,UBERON:0001062,UBERON:0000480,UBERON:0000075,UBERON:0004765,UBERON:0001708,UBERON:0011159,UBERON:0002204,UBERON:0001434,UBERON:0008895,UBERON:0011137,UBERON:0010323
|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000548,CL:0000066,CL:0002371,CL:0002159,CL:0000255,CL:0002077,CL:0002166
|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000548,CL:0000066,CL:0002371,CL:0002159,CL:0000255,CL:0002077,CL:0002166
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|created_by=
|created_by=
|creation_date=
|creation_date=
|datafreeze_phase=1
|data_phase=2
|datafreeze_phase=2
|def=
|def=
|expression_enrichment_score=chr1:209979467..209979494,-!p1@IRF6!2.19!171.34!IRF6;;chr17:7493405..7493419,-!p1@SOX15!2.06!112.88!SOX15;;chr3:111314186..111314204,-!p1@ZBED2!2.05!111.71!ZBED2;;chr11:34642612..34642646,+!p1@EHF!1.97!93.40!EHF;;chr1:209979411..209979433,-!p2@IRF6!1.84!68.54!IRF6;;chr1:6479968..6479986,-!p1@HES2!1.79!60.81!HES2;;chr3:189507432..189507459,+!p1@TP63!1.74!54.09!TP63;;chr6:10415276..10415341,-!p2@TFAP2A!1.64!52.24!TFAP2A;;chr6:10412600..10412637,-!p1@TFAP2A!1.51!51.74!TFAP2A;;chr15:83953397..83953425,-!p1@BNC1!1.50!34.94!BNC1;;chr4:111544219..111544240,-!p1@PITX2!1.50!30.74!PITX2;;chr11:34645791..34645836,+!p3@EHF!1.48!29.40!EHF;;chr15:101069113..101069169,-!p1@CERS3!1.46!28.05!CERS3;;chr12:54785054..54785072,-!p4@ZNF385A!1.42!28.72!ZNF385A;;chr3:111314230..111314241,-!p2@ZBED2!1.42!25.20!ZBED2;;chr5:134369905..134369972,-!p1@PITX1!1.39!35.44!PITX1;;chrX:2418949..2419024,-!p1@DHRSX,p1@ZBED1!1.31!19.49!ZBED1;;chr12:54785074..54785122,-!p2@ZNF385A!1.30!28.72!ZNF385A;;chr21:36421535..36421610,-!p2@RUNX1!1.27!62.32!RUNX1;;chr17:7492684..7492778,-!p2@SOX15!1.19!30.74!SOX15;;chr6:10415484..10415508,-!p3@TFAP2A!1.15!13.10!TFAP2A;;chr8:49833948..49833973,-!p2@SNAI2!1.14!80.46!SNAI2;;chr8:10588010..10588030,-!p1@SOX7!1.09!11.42!SOX7;;chr5:134369879..134369898,-!p2@PITX1!1.07!10.75!PITX1;;chr12:66218598..66218645,+!p2@HMGA2!1.04!46.87!HMGA2;;chr4:111558135..111558198,-!p2@PITX2!1.04!10.08!PITX2;;chr20:39317868..39317884,-!p1@MAFB!1.03!115.74!MAFB;;chr8:49833978..49833996,-!p1@SNAI2!1.02!196.54!SNAI2;;chr12:66218836..66218888,+!p1@HMGA2!1.02!89.37!HMGA2;;chr11:34642656..34642667,+!p2@EHF!1.02!9.57!EHF;;chr9:100615499..100615519,+!p1@FOXE1!1.02!9.41!FOXE1;;chr19:45908292..45908374,-!p1@PPP1R13L!1.01!82.82!PPP1R13L;;chr14:74256787..74256858,-!p6@C14orf43!0.97!8.23!C14orf43;;chr16:67881588..67881612,-!p2@CENPT!0.96!11.25!CENPT;;chr19:53496768..53496799,-!p1@ZNF702P!0.93!11.76!ZNF702P;;chr5:72744594..72744609,-!p1@FOXD1!0.91!34.27!FOXD1;;chr1:158979792..158979814,+!p2@IFI16!0.90!69.21!IFI16;;chr8:102504651..102504683,+!p1@GRHL2!0.88!6.55!GRHL2;;chr2:231084639..231084654,-!p2@SP110!0.87!10.92!SP110;;chr5:2751762..2751784,-!p1@IRX2!0.87!6.38!IRX2;;chr19:42636586..42636607,-!p1@POU2F2!0.85!17.64!POU2F2;;chr20:55204351..55204377,+!p1@TFAP2C!0.82!7.22!TFAP2C;;chr12:27485762..27485776,+!p3@ARNTL2!0.81!15.62!ARNTL2;;chr1:209979375..209979386,-!p4@IRF6!0.80!5.38!IRF6;;chr5:3595977..3595999,+!p1@IRX1!0.79!5.21!IRX1;;chr2:122042770..122042785,-!p1@TFCP2L1!0.79!5.21!TFCP2L1;;chr16:54320646..54320672,-!p2@IRX3!0.78!7.90!IRX3;;chr17:3571863..3571881,-!p1@TAX1BP3!0.74!356.46!TAX1BP3;;chr2:46524897..46524911,+!p2@EPAS1!0.74!13.77!EPAS1;;chr16:54320101..54320125,-!p4@IRX3!0.74!6.72!IRX3;;chrX:56258844..56258882,+!p1@KLF8!0.73!6.22!KLF8;;chr22:19748231..19748317,+!p1@TBX1!0.73!4.37!TBX1;;chr3:69811858..69811881,+!p5@MITF!0.73!4.37!MITF;;chr11:34643638..34643667,+!p8@EHF!0.73!4.37!EHF;;chr12:48298765..48298783,-!p2@VDR!0.72!9.57!VDR;;chr6:28321909..28321965,-!p3@ZNF323!0.72!4.20!ZNF323;;chr15:83953373..83953386,-!p2@BNC1!0.72!4.20!BNC1;;chr16:31076332..31076388,-!p3@ZNF668!0.72!4.20!ZNF668;;chr3:32023232..32023273,+!p1@ZNF860!0.71!6.22!ZNF860;;chr13:73633131..73633149,+!p1@KLF5!0.70!48.71!KLF5;;chr12:66218255..66218304,+!p3@HMGA2!0.70!11.76!HMGA2;;chr3:141121847..141121868,+!p5@ZBTB38!0.70!6.38!ZBTB38;;chr2:231084820..231084836,-!p5@SP110!0.70!4.70!SP110;;chr2:63277948..63277974,+!p1@OTX1!0.70!4.03!OTX1;;chr1:209979449..209979460,-!p3@IRF6!0.70!4.03!IRF6;;chr16:67881647..67881663,-!p3@CENPT!0.70!4.03!CENPT;;chr16:54320617..54320643,-!p3@IRX3!0.69!5.21!IRX3;;chr6:10412576..10412599,-!p5@TFAP2A!0.69!3.86!TFAP2A;;chr13:41593425..41593480,-!p1@ELF1!0.68!27.55!ELF1;;chr1:151032782..151032801,+!p4@MLLT11!0.68!8.23!MLLT11;;chr3:170076314..170076334,+!p2@SKIL!0.66!4.87!SKIL;;chr12:66218904..66218913,+!p11@HMGA2!0.66!3.53!HMGA2;;chr1:37940170..37940190,+!p1@ZC3H12A!0.65!49.89!ZC3H12A;;chr6:10412392..10412409,-!p4@TFAP2A!0.65!4.03!TFAP2A;;chr1:203764633..203764674,+!p2@ZC3H11A!0.64!5.88!ZC3H11A;;chr19:57792157..57792170,+!p6@ZNF460!0.64!5.21!ZNF460;;chr6:106546808..106546833,+!p3@PRDM1!0.64!4.37!PRDM1;;chr6:10415263..10415274,-!p8@TFAP2A!0.64!3.36!TFAP2A;;chr1:151032860..151032918,+!p1@MLLT11!0.63!46.20!MLLT11;;chr17:70117153..70117174,+!p1@SOX9!0.63!39.64!SOX9;;chr7:28725740..28725778,+!p1@CREB5!0.63!34.10!CREB5;;chr16:54320675..54320715,-!p1@IRX3!0.62!7.73!IRX3;;chr12:66218183..66218209,+!p4@HMGA2!0.62!6.72!HMGA2;;chr12:66218003..66218018,+!p9@HMGA2!0.62!4.03!HMGA2;;chr11:31832658..31832681,-!p1@PAX6!0.62!3.19!PAX6;;chr6:28321971..28321995,-!p1@ZNF323!0.62!3.19!ZNF323;;chr6:41701557..41701578,-!p3@TFEB!0.62!3.19!TFEB;;chr4:188916918..188916942,+!p1@ZFP42!0.62!3.19!ZFP42;;chr12:72056800..72056834,+!p1@THAP2!0.61!4.37!THAP2;;chr2:231084659..231084721,-!p1@SP110!0.60!83.66!SP110;;chr2:208030647..208030689,-!p1@KLF7!0.60!30.24!KLF7;;chr19:20278012..20278034,+!p1@ZNF486!0.60!30.07!ZNF486;;chr12:27485785..27485816,+!p1@ARNTL2!0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|fantom_cat=http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000066;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000221;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0002077;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0002159;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0002166;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0000075;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0003350;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0008814;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0010323;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0011137
|ffid_belonging_in_development=CL:0000221
|fonse_cell_line=
|fonse_cell_line=
|fonse_cell_line_closure=
|fonse_cell_line_closure=
Line 37: Line 42:
|fonse_treatment_closure=
|fonse_treatment_closure=
|has_quality=
|has_quality=
|hg19bam=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/Mallassez-derived%2520cells%252c%2520donor2.CNhs13550.11929-125I3.hg19.nobarcode.bam
|hg19ctss=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/Mallassez-derived%2520cells%252c%2520donor2.CNhs13550.11929-125I3.hg19.ctss.bed.gz
|hg19fasta=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/Mallassez-derived%2520cells%252c%2520donor2.CNhs13550.11929-125I3.hg19.nobarcode.rdna.fa.gz
|hg38bam=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.primary_cell.hCAGE/Mallassez-derived%2520cells%252c%2520donor2.CNhs13550.11929-125I3.hg38.nobarcode.bam
|hg38ctss=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.primary_cell.hCAGE/Mallassez-derived%2520cells%252c%2520donor2.CNhs13550.11929-125I3.hg38.nobarcode.ctss.bed.gz
|id=FF:11929-125I3
|id=FF:11929-125I3
|is_a=EFO:0002091;;FF:0000087
|is_a=EFO:0002091;;FF:0000087
|is_obsolete=
|is_obsolete=
|library_id=CNhs13550
|library_id_phase_based=2:CNhs13550
|microRNAs=
|microRNAs_nn=
|microRNAs_nonnovel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer/#/human#cage;sample;11929
|microRNAs_novel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer_novel/#/human#cage;sample;11929
|name=Mallassez-derived cells, donor2
|name=Mallassez-derived cells, donor2
|namespace=
|namespace=
Line 47: Line 63:
|profile_rnaseq=
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|profile_srnaseq=
|profile_srnaseq=
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Line 60: Line 79:
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|sample_cell_line=
Line 81: Line 101:
|top_motifs=TP53:2.80914205801;TBX4,5:2.37828263609;NKX3-2:1.83977568216;TEF:1.8056156966;PAX4:1.42474871389;TEAD1:1.32950532179;PPARG:1.29162178043;ZEB1:1.2079460969;EVI1:1.07788914972;HAND1,2:1.05352844808;SNAI1..3:1.0096940471;ADNP_IRX_SIX_ZHX:1.00730469318;HSF1,2:0.962065096701;NKX2-3_NKX2-5:0.931692381447;NFIX:0.849710768293;TFCP2:0.822556814095;PDX1:0.774959749839;IRF7:0.774540799456;VSX1,2:0.771852435736;HMGA1,2:0.733550085535;ZNF238:0.725084959372;POU3F1..4:0.684043015349;ELK1,4_GABP{A,B1}:0.680527996792;GLI1..3:0.640868577972;FOS_FOS{B,L1}_JUN{B,D}:0.61768667376;FOXN1:0.616506003746;XCPE1{core}:0.590848457105;NR1H4:0.58984081989;NFIL3:0.577800749342;MYOD1:0.570085259105;ZIC1..3:0.564993204052;BACH2:0.554093807044;NANOG:0.54980933477;TLX2:0.543102784506;SP1:0.507536308056;MAZ:0.499318854079;POU1F1:0.497480964413;FOSL2:0.492830266617;ZNF148:0.489631395452;NKX2-2,8:0.474969404948;SOX17:0.47239568965;NKX2-1,4:0.458957378796;UFEwm:0.412289055086;SOX2:0.406238164946;ARID5B:0.402095492683;ONECUT1,2:0.369912029918;KLF4:0.361996900084;SPZ1:0.328589469817;NR3C1:0.320892864771;NKX3-1:0.319304855734;MAFB:0.296351163464;TLX1..3_NFIC{dimer}:0.278495867591;GCM1,2:0.212367680963;SMAD1..7,9:0.206526735337;TBP:0.193048732547;IKZF1:0.191001806378;HOX{A4,D4}:0.178566129575;GFI1B:0.170292605899;LMO2:0.151620043594;ZNF143:0.150467187327;NRF1:0.0831109435566;MYBL2:0.0767720392189;HLF:0.0632680901138;MTF1:0.0487603792357;NFATC1..3:0.0433770504579;TFAP2{A,C}:0.0395966442323;IRF1,2:0.0351926634326;HIF1A:0.0309940614223;LHX3,4:0.012367015289;HMX1:0.00965678572197;GFI1:0.00793873099197;LEF1_TCF7_TCF7L1,2:0.00662569791811;NFE2:-0.00536701622073;STAT1,3:-0.0121255209373;RBPJ:-0.0404028792318;FOXA2:-0.0462090782455;ZBTB6:-0.0599814969446;NFKB1_REL_RELA:-0.0606801066544;ALX1:-0.0767933944241;GTF2A1,2:-0.0791661261148;MTE{core}:-0.0841257166108;POU6F1:-0.0881998866156;OCT4_SOX2{dimer}:-0.102161020932;GZF1:-0.10224680257;PAX1,9:-0.103691722798;RUNX1..3:-0.149448317782;HOX{A5,B5}:-0.151080558409;NFE2L1:-0.166393562317;NHLH1,2:-0.169665478797;JUN:-0.179443026808;RXR{A,B,G}:-0.182157098784;SRF:-0.182677973616;HNF1A:-0.182901363719;REST:-0.188998367319;EBF1:-0.191892571617;PAX2:-0.200766692417;MYFfamily:-0.205825795033;EP300:-0.217303050066;AIRE:-0.222916736785;NFY{A,B,C}:-0.225603880368;CEBPA,B_DDIT3:-0.236601857068;ELF1,2,4:-0.238179792827;FOXO1,3,4:-0.265618698829;FOXP3:-0.278523305933;YY1:-0.280569623918;EN1,2:-0.282341975805;RXRA_VDR{dimer}:-0.29063432527;ATF5_CREB3:-0.297855364751;ALX4:-0.307930867341;AR:-0.327027826859;GTF2I:-0.334680496278;PAX5:-0.346334594414;ETS1,2:-0.347400149546;SPI1:-0.353687831599;FOXM1:-0.355360832816;ZFP161:-0.372358246491;ATF6:-0.380758415745;SPIB:-0.388748993198;RFX1:-0.389367554348;CDC5L:-0.391395988842;SOX{8,9,10}:-0.393017979835;PRDM1:-0.399362477065;FOX{I1,J2}:-0.413860727888;bHLH_family:-0.419662416574;ZNF384:-0.425052574122;ATF4:-0.428449311397;GATA6:-0.430990432789;TAL1_TCF{3,4,12}:-0.444325025186;NFE2L2:-0.458788482738;NR6A1:-0.475052191855;MED-1{core}:-0.493115749526;STAT5{A,B}:-0.534844581828;TFDP1:-0.546664201709;ATF2:-0.54973663009;RFX2..5_RFXANK_RFXAP:-0.564611727485;SREBF1,2:-0.566457217796;RXR{A,B,G}_{NR1H2,PPAR}dimers:-0.579517148813;TFAP2B:-0.581077451243;MYB:-0.593459465672;CDX1,2,4:-0.600061799407;E2F1..5:-0.601144111604;HES1:-0.60243618655;NANOG{mouse}:-0.613038751154;PITX1..3:-0.625234094834;CRX:-0.626570959838;FOX{F1,F2,J1}:-0.630400618716;T:-0.642750093683;BPTF:-0.645015547673;PAX8:-0.651268749566;DBP:-0.653761234484;HNF4A_NR2F1,2:-0.65501186595;MEF2{A,B,C,D}:-0.66865284772;HOX{A6,A7,B6,B7}:-0.669812604809;HIC1:-0.67036758808;PRRX1,2:-0.678756579127;CUX2:-0.683395903917;MZF1:-0.685550370467;TGIF1:-0.685564841147;TOPORS:-0.695497558855;GATA4:-0.699164115858;TFAP4:-0.709772026407;ZBTB16:-0.720096450582;FOXL1:-0.765471945303;FOX{D1,D2}:-0.780902778132;CREB1:-0.795558033029;NR5A1,2:-0.810735708063;ZNF423:-0.835302069919;HOXA9_MEIS1:-0.855197887328;AHR_ARNT_ARNT2:-0.921401745221;RREB1:-0.932233602466;NKX6-1,2:-0.957427067188;ESR1:-0.969674772952;EGR1..3:-1.00529612903;STAT2,4,6:-1.03315898787;POU5F1:-1.04912495156;DMAP1_NCOR{1,2}_SMARC:-1.0609928452;FOXQ1:-1.13269105643;HBP1_HMGB_SSRP1_UBTF:-1.14894890924;POU2F1..3:-1.18473518621;PAX6:-1.1870195198;SOX5:-1.20169424821;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:-1.28192428365;XBP1:-1.30802327431;PATZ1:-1.33134049433;FOXP1:-1.35341928318;PBX1:-1.35427625133;RORA:-1.35882596649;PAX3,7:-1.41695041239;ESRRA:-1.45805746596;BREu{core}:-1.58436443353;IKZF2:-1.6215430053;FOXD3:-1.76408328813
|top_motifs=TP53:2.80914205801;TBX4,5:2.37828263609;NKX3-2:1.83977568216;TEF:1.8056156966;PAX4:1.42474871389;TEAD1:1.32950532179;PPARG:1.29162178043;ZEB1:1.2079460969;EVI1:1.07788914972;HAND1,2:1.05352844808;SNAI1..3:1.0096940471;ADNP_IRX_SIX_ZHX:1.00730469318;HSF1,2:0.962065096701;NKX2-3_NKX2-5:0.931692381447;NFIX:0.849710768293;TFCP2:0.822556814095;PDX1:0.774959749839;IRF7:0.774540799456;VSX1,2:0.771852435736;HMGA1,2:0.733550085535;ZNF238:0.725084959372;POU3F1..4:0.684043015349;ELK1,4_GABP{A,B1}:0.680527996792;GLI1..3:0.640868577972;FOS_FOS{B,L1}_JUN{B,D}:0.61768667376;FOXN1:0.616506003746;XCPE1{core}:0.590848457105;NR1H4:0.58984081989;NFIL3:0.577800749342;MYOD1:0.570085259105;ZIC1..3:0.564993204052;BACH2:0.554093807044;NANOG:0.54980933477;TLX2:0.543102784506;SP1:0.507536308056;MAZ:0.499318854079;POU1F1:0.497480964413;FOSL2:0.492830266617;ZNF148:0.489631395452;NKX2-2,8:0.474969404948;SOX17:0.47239568965;NKX2-1,4:0.458957378796;UFEwm:0.412289055086;SOX2:0.406238164946;ARID5B:0.402095492683;ONECUT1,2:0.369912029918;KLF4:0.361996900084;SPZ1:0.328589469817;NR3C1:0.320892864771;NKX3-1:0.319304855734;MAFB:0.296351163464;TLX1..3_NFIC{dimer}:0.278495867591;GCM1,2:0.212367680963;SMAD1..7,9:0.206526735337;TBP:0.193048732547;IKZF1:0.191001806378;HOX{A4,D4}:0.178566129575;GFI1B:0.170292605899;LMO2:0.151620043594;ZNF143:0.150467187327;NRF1:0.0831109435566;MYBL2:0.0767720392189;HLF:0.0632680901138;MTF1:0.0487603792357;NFATC1..3:0.0433770504579;TFAP2{A,C}:0.0395966442323;IRF1,2:0.0351926634326;HIF1A:0.0309940614223;LHX3,4:0.012367015289;HMX1:0.00965678572197;GFI1:0.00793873099197;LEF1_TCF7_TCF7L1,2:0.00662569791811;NFE2:-0.00536701622073;STAT1,3:-0.0121255209373;RBPJ:-0.0404028792318;FOXA2:-0.0462090782455;ZBTB6:-0.0599814969446;NFKB1_REL_RELA:-0.0606801066544;ALX1:-0.0767933944241;GTF2A1,2:-0.0791661261148;MTE{core}:-0.0841257166108;POU6F1:-0.0881998866156;OCT4_SOX2{dimer}:-0.102161020932;GZF1:-0.10224680257;PAX1,9:-0.103691722798;RUNX1..3:-0.149448317782;HOX{A5,B5}:-0.151080558409;NFE2L1:-0.166393562317;NHLH1,2:-0.169665478797;JUN:-0.179443026808;RXR{A,B,G}:-0.182157098784;SRF:-0.182677973616;HNF1A:-0.182901363719;REST:-0.188998367319;EBF1:-0.191892571617;PAX2:-0.200766692417;MYFfamily:-0.205825795033;EP300:-0.217303050066;AIRE:-0.222916736785;NFY{A,B,C}:-0.225603880368;CEBPA,B_DDIT3:-0.236601857068;ELF1,2,4:-0.238179792827;FOXO1,3,4:-0.265618698829;FOXP3:-0.278523305933;YY1:-0.280569623918;EN1,2:-0.282341975805;RXRA_VDR{dimer}:-0.29063432527;ATF5_CREB3:-0.297855364751;ALX4:-0.307930867341;AR:-0.327027826859;GTF2I:-0.334680496278;PAX5:-0.346334594414;ETS1,2:-0.347400149546;SPI1:-0.353687831599;FOXM1:-0.355360832816;ZFP161:-0.372358246491;ATF6:-0.380758415745;SPIB:-0.388748993198;RFX1:-0.389367554348;CDC5L:-0.391395988842;SOX{8,9,10}:-0.393017979835;PRDM1:-0.399362477065;FOX{I1,J2}:-0.413860727888;bHLH_family:-0.419662416574;ZNF384:-0.425052574122;ATF4:-0.428449311397;GATA6:-0.430990432789;TAL1_TCF{3,4,12}:-0.444325025186;NFE2L2:-0.458788482738;NR6A1:-0.475052191855;MED-1{core}:-0.493115749526;STAT5{A,B}:-0.534844581828;TFDP1:-0.546664201709;ATF2:-0.54973663009;RFX2..5_RFXANK_RFXAP:-0.564611727485;SREBF1,2:-0.566457217796;RXR{A,B,G}_{NR1H2,PPAR}dimers:-0.579517148813;TFAP2B:-0.581077451243;MYB:-0.593459465672;CDX1,2,4:-0.600061799407;E2F1..5:-0.601144111604;HES1:-0.60243618655;NANOG{mouse}:-0.613038751154;PITX1..3:-0.625234094834;CRX:-0.626570959838;FOX{F1,F2,J1}:-0.630400618716;T:-0.642750093683;BPTF:-0.645015547673;PAX8:-0.651268749566;DBP:-0.653761234484;HNF4A_NR2F1,2:-0.65501186595;MEF2{A,B,C,D}:-0.66865284772;HOX{A6,A7,B6,B7}:-0.669812604809;HIC1:-0.67036758808;PRRX1,2:-0.678756579127;CUX2:-0.683395903917;MZF1:-0.685550370467;TGIF1:-0.685564841147;TOPORS:-0.695497558855;GATA4:-0.699164115858;TFAP4:-0.709772026407;ZBTB16:-0.720096450582;FOXL1:-0.765471945303;FOX{D1,D2}:-0.780902778132;CREB1:-0.795558033029;NR5A1,2:-0.810735708063;ZNF423:-0.835302069919;HOXA9_MEIS1:-0.855197887328;AHR_ARNT_ARNT2:-0.921401745221;RREB1:-0.932233602466;NKX6-1,2:-0.957427067188;ESR1:-0.969674772952;EGR1..3:-1.00529612903;STAT2,4,6:-1.03315898787;POU5F1:-1.04912495156;DMAP1_NCOR{1,2}_SMARC:-1.0609928452;FOXQ1:-1.13269105643;HBP1_HMGB_SSRP1_UBTF:-1.14894890924;POU2F1..3:-1.18473518621;PAX6:-1.1870195198;SOX5:-1.20169424821;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:-1.28192428365;XBP1:-1.30802327431;PATZ1:-1.33134049433;FOXP1:-1.35341928318;PBX1:-1.35427625133;RORA:-1.35882596649;PAX3,7:-1.41695041239;ESRRA:-1.45805746596;BREu{core}:-1.58436443353;IKZF2:-1.6215430053;FOXD3:-1.76408328813
|xref=
|xref=
|zenbu_report=https://fantom.gsc.riken.jp/zenbu/reports/#miRNA_expression_atlas_human;search_select_hide=table111:FF:11929-125I3;search_select_hide=table117:FF:11929-125I3
}}
}}

Latest revision as of 18:29, 4 June 2020

Name:Mallassez-derived cells, donor2
Species:Human (Homo sapiens)
Library ID:CNhs13550
Sample type:primary cells
Genomic View: UCSC
RefEX:Specific genes
FANTOM CAT:1, 2, 3, 4, 5, 6, 7, 8, 9, 10
CAGEd-oPOSSUM:link
ZENBU report :link
Additional information
Sample information
strainNA
tissueANATOMICAL SYSTEM
dev stageNA
sexfemale
age29
cell typeepithelial cell rests of Malassez
cell lineNA
companyNA
collaborationMitsuhiro Ohshima (Nihon University School of Dentistry)
External link for information[{{{sample_info_link}}} {{{sample_info_link}}}]
RNA information
lot numberMZe6
catalog numberNA
sample typetotal RNA
extraction protocol (Details)OP-RNA-extraction-totalRNA-miRNeasy_Mini-v1.0

CAGE Accession numbers
MethodSample accession id
CAGE  SAMD00005551
Library accession numbers

Library idMethodExp. accession idRun accession id
CNhs13550 CAGE DRX008325 DRR009197
Accession ID Hg19

Library idBAMCTSS
CNhs13550 DRZ000622 DRZ002007
Accession ID Hg38

Library idBAMCTSS
CNhs13550 DRZ011972 DRZ013357
Download raw sequence, BAM & CTSS
Hg19
FastaBAMCTSS
downloaddownloaddonwload
Hg38
BAMCTSS
downloaddonwload


Relative expression to median (log10)

Transcription factors with enriched expression in this sampleRanked list of transcription factor promoter expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.



Co-expression clusters with enriched expression in this sampleRanked list of co-expression cluster expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed. <br>Analyst:NA <br><br>link to dataset.<br>data

Coexpression clusterscore
C0-CD14-Eosinophils-Neutrophils-Basophils-CD34-immature-Peripheral0
C1-testis-epididymis-embryonic-medulla-pituitary-trachea-caudate0
C10-occipital-temporal-parietal-brain-duodenum-Neurons-Neural0
C100-rhabdomyosarcoma-gastric-pineal-Wilms-cervical-mesodermal-endometrial0
C101-small-cerebellum-maxillary-colon-parietal-epididymis-merkel0
C102-neuroblastoma-testicular-pituitary-carcinosarcoma-rectum-acantholytic-iPS0
C103-CD4-CD8-Natural-Peripheral-Whole-Neutrophils-Basophils0
C104-Mast-Basophils-immature-CD14-CD34-eye-Natural0
C105-heart-skeletal-occipital-hippocampus-acute-Sebocyte-penis0.104
C106-Hep2-epitheloid-placenta-cervical-rectal-anaplastic-glassy0
C107-Neutrophils-CD14-Eosinophils-Monocytederived-Whole-Peripheral-blood0
C108-breast-hepatoblastoma-MCF7-parotid-salivary-submaxillary-prostate0
C109-Reticulocytes-non-acute-Hodgkin-Burkitt-retinoblastoma-lymphoma-0.102
C11-cerebellum-medulla-pons-parietal-occipital-middle-medial0
C110-leukemia-chronic-Eosinophils-acute-Whole-CD34-Lymphatic0
C111-medulla-lung-trachea-testis-caudate-epididymis-throat0
C112-gastric-pancreas-temporal-duodenum-small-extraskeletal-adrenal0
C113-thyroid-throat-lung-lymph-small-colon-trachea0
C114-teratocarcinoma-medulloblastoma-carcinosarcoma-iPS-anaplastic-acute-neuroblastoma0
C115-pituitary-Neural-caudate-putamen-amygdala-medulla-hippocampus0
C116-myeloma-xeroderma-tonsil-CD19-spleen-lymph-trachea0
C117-serous-clear-kidney-neuroectodermal-mesothelioma-endometrial-Intestinal0
C118-cerebellum-parietal-occipital-medial-middle-frontal-insula0
C119-CD4-CD8-Natural-Neutrophils-CD14-Peripheral-CD190
C12-Mast-Basophils-immature-chorionic-mature-CD14-Eosinophils0
C120-immature-salivary-tongue-skin-cervical-CD14-CD340
C121-NK-Natural-CD8-CD4-anaplastic-chronic-B0
C122-chronic-Reticulocytes-skeletal-leukemia-acute-colon-Tracheal0
C123-CD19-Natural-CD8-CD4-CD14-Peripheral-Basophils0
C124-small-temporal-duodenum-colon-gall-signet-Hepatocyte0
C125-mucinous-alveolar-mesothelioma-Smooth-lung-CD14-Nucleus0
C126-gastrointestinal-argyrophil-smallcell-merkel-bile-insula-brain0
C127-maxillary-small-hepatoblastoma-hepatocellular-alveolar-colon-argyrophil0
C128-testicular-choriocarcinoma-H9-teratocarcinoma-pancreatic-iPS-HES3GFP0
C129-liver-Hepatocyte-colon-duodenum-temporal-testicular-small0
C13-Neutrophils-Eosinophils-CD14-Monocytederived-Whole-Peripheral-CD40
C130-iPS-HES3GFP-H9-teratocarcinoma-testicular-colon-Alveolar0
C131-lung-trachea-Alveolar-thyroid-umbilical-throat-skin0
C132-acute-small-Dendritic-Macrophage-CD14-Neutrophils-Monocytederived0
C133-signet-gall-small-kidney-colon-ductal-adenocarcinoma0
C134-skeletal-diaphragm-tongue-throat-Skeletal-skin-penis0
C135-neuroblastoma-retinoblastoma-carcinoid-choriocarcinoma-testicular-acute-rectum0
C136-Wilms-extraskeletal-anaplastic-rhabdomyosarcoma-cholangiocellular-nonsmall-neuroectodermal0
C137-large-ductal-melanoma-cervical-Endothelial-Smooth-chronic0
C138-diffuse-Burkitt-lymphangiectasia-lymphoma-acute-CD19-pineal0
C139-astrocytoma-skin-salivary-gall-serous-Mallassezderived-renal0
C14-Whole-blood-Reticulocytes-liver-Neutrophils-Eosinophils-spleen0
C140-Renal-Endothelial-Hepatic-Lymphatic-heart-lung-spleen0
C141-Hodgkin-acute-thymus-chronic-vein-CD4-B0
C142-Preadipocyte-Fibroblast-hepatic-Ewing-Adipocyte-Olfactory-Hair0.547
C143-Monocytederived-CD14-Macrophage-Dendritic-Basophils-CD14CD16-Osteoblast0
C144-CD4-tonsil-NK-appendix-CD8-splenic-mycosis0
C145-neuroblastoma-peripheral-neuroectodermal-neuroepithelioma-carcinoid-adult-extraskeletal0
C146-lymphangiectasia-lymphoma-gall-lymph-tonsil-gastric-transitionalcell0
C147-Neutrophils-Eosinophils-CD4-CD14-CD8-Natural-Peripheral0
C148-kidney-small-epididymis-pancreas-serous-duodenum-temporal0
C149-occipital-medial-brain-amygdala-parietal-cerebral-cerebellum0
C15-anaplastic-small-skeletal-neuroblastoma-parietal-temporal-tongue0
C150-merkel-carcinoid-nonsmall-gastrointestinal-argyrophil-pineal-small0
C151-CD14-Natural-Basophils-CD8-Eosinophils-CD4-Mast0
C152-peripheral-neuroectodermal-neuroepithelioma-neuroblastoma-testicular-carcinoid-lung0
C153-rhabdomyosarcoma-liposarcoma-pancreatic-somatostatinoma-Reticulocytes-lymphoma-testicular0
C154-adenocarcinoma-Mesenchymal-Cardiac-small-sacrococcigeal-Smooth-Prostate0
C155-pituitary-placenta-nonsmall-cervical-smallcell-choriocarcinoma-epitheloid0
C156-plasma-splenic-hereditary-B-large-xeroderma-b0
C157-testicular-H9-testis-iPS-teratocarcinoma-colon-trachea0
C158-adrenal-gastric-temporal-parietal-duodenum-caudate-putamen0
C159-choriocarcinoma-pancreatic-placenta-chorionic-testicular-bronchioalveolar-seminal0
C16-medial-amygdala-occipital-parietal-olfactory-putamen-brain0
C160-medulla-Hepatocyte-retina-corpus-liver-pineal-cerebral0
C161-mesothelioma-Mesothelial-acute-mesenchymal-extraskeletal-renal-placenta0
C162-spinal-locus-medulla-substantia-thalamus-globus-diencephalon0
C163-Skeletal-skeletal-Pericytes-Hepatic-rhabdomyosarcoma-throat-mesenchymal0
C164-signet-corpus-optic-mucinous-substantia-salivary-choriocarcinoma0
C165-epithelioid-Adipocyte-mesothelioma-myxofibrosarcoma-lung-gastric-Mesothelial0
C166-Macrophage-Monocytederived-Dendritic-adipose-lymph-CD14-lung0
C167-Basophils-Mast-Eosinophils-Neutrophils-Peripheral-Whole-CD40
C168-Mast-CD14-immature-Basophils-Eosinophils-CD34-Peripheral0
C169-hereditary-adult-gall-lymphangiectasia-chronic-b-choriocarcinoma0
C17-Mast-CD14-Monocytederived-Lymphatic-Smooth-mesenchymal-Macrophage0
C170-epitheloid-cervical-Hep2-keratoacanthoma-adult-neuroblastoma-signet0
C171-merkel-neuroblastoma-pineal-retinoblastoma-carcinoid-small-eye0
C172-chorionic-skeletal-tongue-amniotic-liver-gastrointestinal-Pericytes0
C173-Adipocyte-mature-skin-left-Hepatocyte-Osteoblast-adipose0
C174-CD14-Neutrophils-Smooth-mesothelioma-embryonic-Monocytederived-Eosinophils0
C175-Eosinophils-Neutrophils-CD4-Basophils-CD19-CD8-Natural0
C176-Eosinophils-Neutrophils-Mast-CD14-CD4-Basophils-CD19-0.0559
C177-melanoma-Melanocyte-mesenchymal-retina-Mallassezderived-Gingival-squamous0
C178-spleen-liver-Hepatocyte-b-lymph-vein-thymus0
C179-CD19-Peripheral-lymphoma-blood-lymph-spleen-tonsil0
C18-CD4-CD8-thymus-Whole-Peripheral-Natural-blood0
C180-skeletal-heart-Hepatocyte-acute-occipital-hippocampus-middle0
C181-liposarcoma-somatostatinoma-neuroblastoma-mesothelioma-nonsmall-small-Alveolar0
C182-renal-mature-mesothelioma-lung-Mammary-Adipocyte-acute0
C183-acute-non-CD34-diffuse-CD133-myeloma-Burkitt0
C184-somatostatinoma-smallcell-nonsmall-small-gastrointestinal-pineal-thyroid0
C185-small-adrenal-gastric-Mesenchymal-acute-HES3GFP-testis0
C186-squamous-papillotubular-large-Tracheal-oral-Small-epidermoid0
C187-migratory-immature-Dendritic-CD19-CD14-Monocytederived-Macrophage0
C188-left-heart-tongue-skeletal-Skeletal-diaphragm-throat0
C189-b-splenic-tonsil-CD19-lymph-appendix-spleen0
C19-embryonic-testis-cord-chronic-CD14-NK-mesothelioma0
C190-colon-small-rectum-duodenum-appendix-temporal-oral0
C191-leiomyoblastoma-Mast-parietal-acute-bone-neuroepithelioma-embryonic0
C192-Neutrophils-CD14-Peripheral-Eosinophils-CD8-Natural-CD40
C193-Mesenchymal-Adipocyte-mature-Cardiac-heart-CD14CD16-CD140
C194-MCF7-breast-prostate-Intestinal-diffuse-Wilms-Alveolar0
C195-Small-Gingival-Bronchial-Smooth-mesenchymal-Urothelial-Tracheal0.0674
C196-testicular-iPS-H9-teratocarcinoma-HES3GFP-choriocarcinoma-endometrial0
C197-tongue-esophagus-tonsil-salivary-cervix-nasal-Gingival0
C198-Mesenchymal-Hair-Hepatic-Fibroblast-Smooth-tenocyte-Pericytes0
C199-glioblastoma-B-osteosarcoma-Fibroblast-heart-rhabdomyosarcoma-myxofibrosarcoma0
C2-Eosinophils-Neutrophils-CD14-Whole-Basophils-Peripheral-Mast0
C20-heart-left-skeletal-diaphragm-tongue-umbilical-throat0
C200-seminal-Cardiac-Smooth-Hair-submaxillary-Neutrophils-mixed-0.142
C201-colon-small-adenocarcinoma-duodenum-temporal-signet-gall0
C202-salivary-skin-penis-tongue-uterus-cervical-immature0
C203-acute-NK-chronic-CD133-lymphoma-immature-Dendritic0
C204-Smooth-nasal-CD4-CD19-CD8-CD14-CD340
C205-mycosis-cord-hairy-xeroderma-CD4-B-b0
C206-melanoma-somatostatinoma-nonsmall-small-neuroblastoma-smallcell-pituitary0
C207-Corneal-Keratinocyte-Esophageal-Mammary-Bronchial-Urothelial-Sebocyte0.479
C208-skin-amniotic-papillotubular-salivary-umbilical-Alveolar-serous0
C209-acute-myelodysplastic-CD34-granulocyte-CD133-liver-spleen0
C21-cord-mycosis-hairy-xeroderma-adult-CD4-anaplastic0
C210-Burkitt-lymphoma-appendix-acute-diffuse-CD19-tonsil0
C211-small-Hepatocyte-liver-colon-temporal-duodenum-kidney0
C212-chronic-acute-Whole-Reticulocytes-leukemia-blood-CD340
C213-CD14-Natural-CD8-CD4-Basophils-Eosinophils-Peripheral0
C214-Neurons-Neural-duodenum-temporal-occipital-parietal-brain0
C215-chronic-acute-peripheral-Hepatocyte-osteosarcoma-NK-immature0
C216-osteosarcoma-Smooth-Mesenchymal-large-neuroectodermal-acute-CD340
C217-carcinoid-neuroectodermal-mature-mesodermal-colon-acute-occipital0
C218-tonsil-lymph-CD19-spleen-colon-appendix-salivary0
C219-nasal-Basophils-amniotic-Melanocyte-CD14-Osteoblast-duodenum0
C22-CD4-CD8-Natural-Basophils-CD14-Peripheral-CD190
C220-Adipocyte-mature-left-breast-skin-liver-adipose0
C221-alveolar-Osteoblast-Myoblast-mesenchymal-liposarcoma-Smooth-hepatocellular0
C222-Melanocyte-Tracheal-Neutrophils-seminal-Smooth-Hair-Chondrocyte-0.216
C223-Chondrocyte-basal-renal-Fibroblast-Smooth-spindle-Synoviocyte0
C224-clear-serous-pleomorphic-choriocarcinoma-mesothelioma-amniotic-renal0
C225-ductal-alveolar-giant-prostate-salivary-squamous-Tracheal0
C226-Corneal-Keratinocyte-Esophageal-Urothelial-Mammary-Bronchial-Tracheal0.888
C227-chorionic-amniotic-Mesenchymal-Placental-gastric-diaphragm-tongue0
C228-colon-Intestinal-Prostate-hepatoblastoma-hepatocellular-testis-adult0
C229-Mesenchymal-CD4-Melanocyte-acute-skeletal-left-heart0
C23-CD4-CD8-Natural-Peripheral-Basophils-CD19-CD140
C230-aorta-normal-heart-penis-osteosarcoma-basal-lung0
C231-Mesothelial-mesenchymal-mesothelioma-Fibroblast-Preadipocyte-leiomyoma-mycosis0
C232-teratocarcinoma-HES3GFP-H9-iPS-testicular-neuroblastoma-cerebellum0
C233-uterus-cervix-ovary-epididymis-colon-rectum-MCF70
C234-oral-epidermoid-malignant-cervical-ductal-lung-keratoacanthoma0
C235-Intestinal-Prostate-liver-colon-small-kidney-pancreas0
C236-CD14-Neutrophils-Monocytederived-renal-Eosinophils-testis-mesothelioma0
C237-acute-breast-testicular-hepatoblastoma-chronic-argyrophil-Bronchial0
C238-stomach-gall-breast-duodenum-temporal-MCF7-smallcell0
C239-CD4-lymphangiectasia-CD8-NK-mycosis-Renal-hairy0
C24-pineal-eye-retina-retinoblastoma-medulloblastoma-small-cerebral0
C240-Adipocyte-Preadipocyte-Osteoblast-Chondrocyte-tenocyte-Synoviocyte-mesenchymal0
C241-Reticulocytes-chronic-Tracheal-Hodgkin-Endothelial-Hair-thymus-0.637
C242-acute-Chondrocyte-myelodysplastic-granulocyte-biphenotypic-Fibroblast-stomach0
C243-Chondrocyte-trachea-Synoviocyte-mesodermal-renal-Fibroblast-Ewing0
C244-CD14-Monocytederived-Hepatocyte-heart-Neutrophils-acute-Macrophage0
C245-prostate-penis-salivary-esophagus-kidney-Neutrophils-Pancreatic0
C246-Neutrophils-Eosinophils-Whole-CD14-CD14CD16-Basophils-migratory0
C247-pons-locus-medulla-spinal-paracentral-medial-occipital0
C248-iPS-Aortic-Hep2-amygdala-acute-medial-Myoblast0.748
C249-nonsmall-small-smallcell-occipital-somatostatinoma-maxillary-medial0
C25-small-colon-temporal-duodenum-liver-Hepatocyte-gall0
C250-Mast-Neutrophils-CD14-Eosinophils-CD8-Peripheral-CD40
C251-gall-tonsil-trachea-CD14-salivary-throat-tongue0
C252-hepatic-Olfactory-sacrococcigeal-leiomyoma-normal-Synoviocyte-glioblastoma0
C253-spleen-rhabdomyosarcoma-Hepatocyte-small-uterus-liver-rectum0
C254-prostate-rhabdomyosarcoma-seminal-Fibroblast-transitionalcell-Smooth-Iris0
C255-Wilms-leiomyoblastoma-kidney-adrenal-MCF7-epithelioid-Mast0
C256-occipital-caudate-amygdala-medial-thalamus-hippocampus-medulla0
C257-pineal-insula-frontal-occipital-temporal-medial-paracentral0
C258-hepatoblastoma-hepatocellular-signet-colon-Intestinal-Prostate-gastric0
C259-Preadipocyte-Adipocyte-Fibroblast-Chondrocyte-tenocyte-normal-Ewing0
C26-Eosinophils-Neutrophils-CD14-CD14CD16-Basophils-Monocytederived-Whole0
C260-acute-chronic-Natural-NK-Basophils-biphenotypic-blood0
C261-locus-medial-parietal-pons-diencephalon-olfactory-spinal0
C262-breast-MCF7-skeletal-Reticulocytes-mucinous-hepatoblastoma-Wilms0
C263-cervical-keratoacanthoma-tongue-skin-esophagus-throat-tonsil0
C264-giant-keratoacanthoma-colon-fibrosarcoma-HES3GFP-Hep2-acute0
C265-CD4-Eosinophils-CD14-Natural-CD19-Basophils-CD80
C266-acute-chronic-leukemia-small-choriocarcinoma-hepatoma-Mast0
C267-pancreatic-placenta-choriocarcinoma-testicular-teratocarcinoma-chorionic-clear0
C268-Mallassezderived-Urothelial-Gingival-Small-Bronchial-Tracheal-Prostate1.088
C269-Basophils-Mast-Eosinophils-mature-CD14-chorionic-CD40
C27-pancreas-temporal-duodenum-salivary-ductus-umbilical-lung0
C270-CD4-Fibroblast-acute-iPS-Aortic-CD34-Smooth0.402
C271-pineal-spinal-locus-globus-medulla-thalamus-cerebellum0
C272-CD19-CD4-CD8-Whole-Peripheral-lymph-tonsil0
C273-Neutrophils-CD14-Eosinophils-Monocytederived-CD4-Natural-Mast0
C274-CD14-Mast-immature-Basophils-mature-vagina-Hepatocyte0
C275-pons-medulla-cerebellum-locus-thalamus-diencephalon-spinal0
C276-mesothelioma-kidney-renal-small-clear-cerebellum-Renal0
C277-mesothelioma-epithelioid-thyroid-extraskeletal-alveolar-glioblastoma-adenocarcinoma0
C278-amygdala-hippocampus-insula-medial-putamen-temporal-olfactory0
C279-parietal-cerebellum-occipital-temporal-middle-duodenum-medial0
C28-thymus-acute-vein-Hodgkin-chronic-throat-Dendritic0
C280-Mast-Natural-CD19-CD8-Eosinophils-CD34-CD40
C281-Hodgkin-Reticulocytes-chronic-NK-acute-retinoblastoma-small-0.293
C282-acute-B-tonsil-CD19-submaxillary-lymph-throat0
C283-tenocyte-Chondrocyte-mesenchymal-Macrophage-pleomorphic-Synoviocyte-cholangiocellular0
C284-parietal-occipital-medial-temporal-olfactory-locus-hippocampus0.0736
C285-cervical-Hep2-small-colon-temporal-duodenum-bronchogenic0
C286-cerebellum-occipital-optic-parietal-globus-caudate-medial0
C287-Hepatocyte-Chondrocyte-Adipocyte-Synoviocyte-liver-tenocyte-mesenchymal0
C288-Chondrocyte-Renal-Pericytes-Fibroblast-aorta-Smooth-Meningeal0
C289-chorionic-skeletal-heart-Mast-amniotic-granulosa-left0
C29-mature-adipose-Adipocyte-breast-Lymphatic-vein-heart0
C290-Eosinophils-CD14-Basophils-Mast-CD4-CD8-immature0
C291-spinal-substantia-retina-medulla-tongue-skeletal-trachea0
C292-Mesenchymal-skin-umbilical-Adipocyte-mesenchymal-Chondrocyte-skeletal0
C293-CD14-CD14CD16-Basophils-Peripheral-immature-Eosinophils-CD340
C294-CD14-Macrophage-Monocytederived-CD14CD16-Neutrophils-Basophils-Peripheral0
C295-Fibroblast-Smooth-Myoblast-Chondrocyte-hepatic-Synoviocyte-Preadipocyte0.607
C296-gall-small-mesothelioma-acute-bronchioalveolar-epidermoid-mixed0
C297-Eosinophils-CD4-Basophils-Natural-Neutrophils-CD8-Peripheral0
C298-small-optic-substantia-thalamus-diencephalon-globus-occipital0
C299-CD14CD16-Eosinophils-Neutrophils-CD14-Whole-Basophils-blood0
C3-occipital-temporal-insula-medial-postcentral-frontal-amygdala0
C30-thyroid-throat-mesothelioma-mucinous-trachea-chorionic-mesenchymal0
C300-CD4-CD8-NK-Natural-blood-mycosis-Basophils0
C301-Smooth-mesenchymal-Endothelial-Hepatic-basal-hepatic-chorionic0.525
C302-acute-peripheral-Neutrophils-NK-myelodysplastic-CD34-carcinoid0
C303-CD14-Basophils-Peripheral-Eosinophils-CD14CD16-Neutrophils-Whole0
C305-heart-skeletal-smooth-left-bladder-penis-esophagus0
C31-skeletal-tongue-diaphragm-throat-penis-skin-trachea0
C32-middle-occipital-parietal-hippocampus-amygdala-medial-olfactory0
C33-Reticulocytes-liver-Whole-blood-chronic-acute-spleen0
C34-placenta-chorionic-choriocarcinoma-mesothelioma-Wilms-Smooth-bile0
C35-caudate-putamen-diencephalon-nucleus-globus-thalamus-insula0
C36-B-b-splenic-plasma-xeroderma-adrenal-Burkitt0
C37-salivary-submaxillary-parotid-seminal-tongue-ductus-trachea0
C38-extraskeletal-rhabdomyosarcoma-adrenal-rectal-mesothelioma-lung-Wilms0
C39-epididymis-ductus-seminal-testis-acute-thyroid-CD1330
C4-optic-corpus-substantia-medulla-spinal-thalamus-globus0
C40-eye-retina-Lens-pineal-tongue-retinoblastoma-small0
C41-retina-eye-medulla-Retinal-medulloblastoma-kidney-pineal0
C42-small-lung-maxillary-pharyngeal-Mesenchymal-Wilms-colon0
C43-ductus-seminal-duodenum-temporal-gall-prostate-bladder0
C44-Dendritic-CD19-CD133-granulocyte-acute-thymus-immature0
C45-testicular-choriocarcinoma-H9-teratocarcinoma-Wilms-pancreatic-iPS0
C46-acute-Hodgkin-thymus-CD8-chronic-CD4-merkel0
C47-CD19-Burkitt-acute-xeroderma-tonsil-lymphoma-appendix0
C48-smooth-bladder-esophagus-colon-penis-aorta-uterus0
C49-H9-iPS-testicular-HES3GFP-teratocarcinoma-hepatoblastoma-choriocarcinoma0
C5-Hepatocyte-liver-hepatocellular-Intestinal-kidney-small-pancreas0
C50-chorionic-placenta-amniotic-migratory-smallcell-chronic-choriocarcinoma0
C51-kidney-mesothelioma-renal-signet-gall-lung-pancreas0
C52-adult-NK-chronic-cord-testis-embryonic-myeloma0
C53-medulloblastoma-pineal-retinoblastoma-small-retina-eye-pituitary0
C54-Dendritic-Macrophage-Monocytederived-CD14-leiomyoma-adipose-immature0
C55-hepatocellular-Intestinal-liver-Prostate-fibrosarcoma-Hepatocyte-hepatoblastoma0
C56-heart-left-umbilical-skeletal-penis-diaphragm-tongue0
C57-Neutrophils-Eosinophils-Whole-CD4-CD8-CD19-Natural0
C58-Melanocyte-melanoma-retina-Retinal-eye-migratory-H90
C59-Smooth-Fibroblast-Mesenchymal-tenocyte-Ewing-skin-hepatic0.0674
C6-CD14-Eosinophils-Basophils-Peripheral-CD34-Natural-immature0
C60-esophagus-tonsil-throat-tongue-uterus-cervix-cervical0
C61-migratory-Dendritic-immature-Macrophage-xeroderma-cord-b0
C62-Burkitt-tonsil-CD19-submaxillary-spleen-salivary-lymph0
C63-neuroectodermal-neuroblastoma-carcinoid-peripheral-chronic-neuroepithelioma-acute0
C64-Mast-chronic-acute-immature-chorionic-Basophils-Dendritic0
C65-CD14-Eosinophils-Monocytederived-Basophils-immature-Macrophage-Neutrophils0
C66-cerebellum-middle-occipital-parietal-medial-amygdala-hippocampus0
C67-CD14-Monocytederived-Macrophage-dura-Dendritic-spleen-lung0
C68-amniotic-chorionic-Placental-salivary-placenta-tongue-mesothelioma0
C69-anaplastic-CD14-cord-hairy-mycosis-adult-NK0
C7-CD14-Eosinophils-Neutrophils-Smooth-Basophils-Macrophage-Mast0
C70-parotid-submaxillary-salivary-throat-trachea-aorta-tongue0
C71-Monocytederived-Macrophage-CD14-Dendritic-Osteoblast-leiomyoma-Prostate0
C72-skeletal-tongue-throat-heart-diaphragm-penis-left0
C73-pineal-eye-retina-caudate-cerebellum-left-parietal0
C74-splenic-B-b-plasma-xeroderma-lymphoma-hairy0
C75-Eosinophils-Natural-CD8-Basophils-CD14-CD4-Peripheral0
C76-argyrophil-gastrointestinal-temporal-duodenum-neuroblastoma-merkel-smallcell0
C77-Saos2-osteosarcoma-Neutrophils-Natural-Chondrocyte-Basophils-CD80
C78-lymphoma-plasma-tonsil-appendix-lymph-seminal-trachea0
C79-chorionic-Chondrocyte-Cardiac-Smooth-Fibroblast-Preadipocyte-Mesenchymal0.4
C8-Natural-CD8-Basophils-CD4-CD14-Peripheral-CD340
C80-immature-migratory-CD14-Dendritic-splenic-cord-Mast0
C81-trachea-salivary-throat-aorta-eye-submaxillary-parotid0
C82-Basophils-CD14-Eosinophils-Natural-Peripheral-immature-CD340
C83-choriocarcinoma-pancreatic-placenta-chorionic-HES3GFP-testicular-amniotic0
C84-choriocarcinoma-pancreatic-Wilms-Mallassezderived-thymus-salivary-colon0
C85-neuroblastoma-carcinoid-retinoblastoma-small-pineal-rhabdomyosarcoma-medulloblastoma0
C86-colon-carcinoid-small-neuroectodermal-giant-large-neuroepithelioma0
C87-retinoblastoma-left-nonsmall-heart-small-diaphragm-bronchogenic0
C88-Melanocyte-melanoma-Macrophage-Mesenchymal-migratory-Dendritic-Monocytederived0
C89-small-retinoblastoma-medulloblastoma-iPS-acantholytic-eye-bronchogenic0
C9-skeletal-diaphragm-tongue-throat-penis-heart-left0
C90-neuroectodermal-peripheral-neuroepithelioma-neuroblastoma-carcinoid-parietal-putamen0
C91-Fibroblast-Smooth-mesenchymal-Mesothelial-Small-Preadipocyte-Hair0
C92-CD14CD16-CD14-Eosinophils-Basophils-Neutrophils-Macrophage-Whole0
C93-chronic-acute-leukemia-acantholytic-medulloblastoma-testis-papillotubular0
C94-smallcell-adrenal-lung-nonsmall-small-somatostatinoma-teratocarcinoma0
C95-lung-aorta-trachea-penis-Alveolar-throat-endometrioid0
C96-non-acute-tonsil-spleen-Burkitt-lymphoma-appendix0
C97-small-smallcell-gastrointestinal-argyrophil-putamen-duodenum-brain0
C98-CD8-Natural-Basophils-blood-CD4-Peripheral-Whole0
C99-hairy-mycosis-submaxillary-salivary-cord-kidney-parotid0



Repeat families with enriched expression in this sample<b>Summary:</b>Ranked list of repeat family expression in this sample relative tothe median expression in the FANTOM5 collection is shown. Value is log10transformed.<br><b>Analyst:</b>NA<br><br>link to dataset.<br>data



TFBS(DNA)motifs over-represented in proximal region of promoters active in this sample

JASPAR motifs<b>Summary:</b>Association of JASPAR motif to the promoter expression in thissample. Pearson's correlation between the number of TFBSs estimated byusing the position-weight matrix for each promoter and its expression isexpressed as Z-score by taking the ones based on random position-weightmatrix, and the tail probability of the normal distribution correspondingto the Z-score is taken as the resulting P-value. Lower P-value indicatesmore (non-random) association of the motif to promoter expression<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data

library id: CNhs13550

Jaspar motifP-value
MA0002.20.46
MA0003.10.905
MA0004.10.0162
MA0006.10.0048
MA0007.10.477
MA0009.10.203
MA0014.10.0898
MA0017.10.759
MA0018.20.00472
MA0019.10.024
MA0024.12.31427e-5
MA0025.10.556
MA0027.10.497
MA0028.10.0981
MA0029.10.339
MA0030.10.173
MA0031.10.123
MA0035.20.204
MA0038.10.271
MA0039.20.0022
MA0040.10.402
MA0041.10.401
MA0042.10.985
MA0043.10.0337
MA0046.10.403
MA0047.20.936
MA0048.10.696
MA0050.10.792
MA0051.10.428
MA0052.10.00146
MA0055.10.206
MA0057.10.0571
MA0058.10.0025
MA0059.10.426
MA0060.10.164
MA0061.10.865
MA0062.20.292
MA0065.20.81
MA0066.10.286
MA0067.10.0166
MA0068.13.57043e-6
MA0069.10.209
MA0070.10.593
MA0071.10.0267
MA0072.10.319
MA0073.10.649
MA0074.10.325
MA0076.10.339
MA0077.10.0472
MA0078.10.781
MA0079.20.418
MA0080.29.87442e-4
MA0081.10.304
MA0083.10.414
MA0084.10.122
MA0087.10.839
MA0088.10.952
MA0090.11.45975e-7
MA0091.10.453
MA0092.10.199
MA0093.10.00907
MA0099.21.06479e-11
MA0100.10.454
MA0101.10.45
MA0102.20.18
MA0103.11.58236e-4
MA0104.20.00979
MA0105.10.479
MA0106.12.725e-13
MA0107.10.425
MA0108.20.00701
MA0111.10.878
MA0112.20.15
MA0113.10.51
MA0114.10.772
MA0115.10.143
MA0116.10.606
MA0117.10.645
MA0119.10.288
MA0122.10.794
MA0124.10.834
MA0125.10.0873
MA0131.10.833
MA0135.10.732
MA0136.10.151
MA0137.20.24
MA0138.20.603
MA0139.10.499
MA0140.10.602
MA0141.10.00958
MA0142.10.937
MA0143.10.554
MA0144.10.621
MA0145.10.0178
MA0146.10.539
MA0147.10.0517
MA0148.10.928
MA0149.10.112
MA0150.10.674
MA0152.10.815
MA0153.10.962
MA0154.10.27
MA0155.10.317
MA0156.10.647
MA0157.10.0927
MA0159.10.871
MA0160.10.332
MA0162.10.0357
MA0163.10.821
MA0164.10.814
MA0258.10.333
MA0259.10.0532



FANTOM5 phase1 novel unique motifs<b>Summary:</b>Association of the 169 novel and unique motifs discovered in FANTOM5 phase1 in this sample. Among the de-novo motifs discovered by DMF, HOMER,ChIPMunk, and ScanAll, only novel motifs are selected after comparison with known motif sets, and their clustering based on MACRO-APE resulted in169 novel and unique motifs. Their association to the promoter expression is evaluated in the same way to the JASPAR motif above<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data

library id: CNhs13550

Novel motifP-value
10.911
100.281
1000.351
1010.327
1020.704
1030.0162
1040.978
1050.518
1060.475
1070.241
1080.605
1090.031
110.765
1100.488
1110.269
1120.122
1130.261
1140.0518
1150.925
1160.727
1170.288
1180.724
1190.967
120.831
1200.0345
1210.302
1220.45
1230.0356
1240.0302
1250.965
1260.246
1270.131
1280.966
1290.229
130.0458
1300.676
1310.306
1320.851
1330.0864
1340.34
1350.693
1360.0609
1370.184
1380.552
1390.859
140.849
1400.547
1410.731
1420.87
1430.747
1440.561
1450.282
1460.15
1470.519
1480.367
1490.798
150.745
1500.129
1510.52
1520.0072
1530.726
1540.748
1550.851
1560.538
1570.287
1580.106
1590.819
160.075
1600.663
1610.956
1620.877
1630.873
1640.899
1650.239
1660.95
1670.321
1680.0934
1690.0957
170.466
180.253
190.989
20.223
200.796
210.583
220.703
230.211
240.0106
250.687
260.799
270.676
280.303
290.699
30.919
300.0434
310.943
320.763
330.074
340.401
350.0358
360.232
370.0893
380.706
390.391
40.42
400.0883
410.509
420.868
430.73
440.345
450.0457
460.979
470.469
480.187
490.307
50.863
500.634
510.94
520.136
530.228
540.62
550.133
560.333
570.593
580.968
590.517
60.524
600.255
610.266
620.891
630.345
640.78
650.88
660.441
670.675
680.357
690.384
70.519
700.134
710.496
720.845
730.00204
740.0941
750.439
760.852
770.0972
780.0132
790.613
80.841
800.978
810.205
820.803
830.308
840.113
850.704
860.772
870.00852
880.855
890.0318
90.725
900.258
910.751
920.592
930.152
940.883
950.121
960.866
970.393
980.415
990.207



de novo motifs identified by HOMER in promoters active in this sample<b>Summary:</b>The result of HOMER in this sample is shown.<br><b>Analyst:</b>NA <br> library id: CNhs13550


FANTOM5 (FF) ontology

Direct parent terms


Ancestor terms (non development)<b>Summary:</b>Connected ontology terms with is_a, part_of or located_in relationship <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source data<br>data

CL: Cell type
0000000 (cell), 0000000 (cell)
0000003 (native cell)
0000548 (animal cell)
0000066 (epithelial cell)
0002371 (somatic cell)
0002159 (general ecto-epithelial cell)
0000255 (eukaryotic cell)
0002077 (ecto-epithelial cell)
0002166 (epithelial cell of Malassez)

UBERON: Anatomy
0000468 (multi-cellular organism)
0010314 (structure with developmental contribution from neural crest)
0011216 (organ system subdivision)
0000062 (organ)
0000061 (anatomical structure)
0000465 (material anatomical entity)
0000477 (anatomical cluster)
0000467 (anatomical system)
0001062 (anatomical entity)
0000480 (anatomical group)
0000075 (subdivision of skeletal system)
0004765 (skeletal element)
0001708 (jaw skeleton)
0011159 (primary subdivision of cranial skeletal system)
0002204 (musculoskeletal system)
0001434 (skeletal system)
0008895 (splanchnocranium)
0011137 (axial skeletal system)
0010323 (cranial skeletal system)

FF: FANTOM5
0000102 (sample by type)
0000210 (human sample)
0000002 (in vivo cell sample)
0000101 (sample by species)
0000001 (sample)
0000087 (human Malassez derived epithelial cell sample)

Ancestor terms (development)<b>Summary:</b>Connected ontology terms with develops_from, derives_from or preceded_by relationship <br><b>Analyst:</b> Hideya Kawaji <br><br>link to source data<br>data
CL:0000221 (ectodermal cell)

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