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(Created page with "{{f5samples |id=FF:11930-125I4 |name=Mallassez-derived cells, donor3 |sample_id=11930 |rna_tube_id=125I4 |rna_box=125 |rna_position=I4 |sample_cell_lot= |sample_cell_catalog= ...")
 
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{{f5samples
{{f5samples
|id=FF:11930-125I4
|DRA_sample_Accession=CAGE@SAMD00005171
|name=Mallassez-derived cells, donor3
|accession_numbers=CAGE;DRX008326;DRR009198;DRZ000623;DRZ002008;DRZ011973;DRZ013358
|sample_id=11930
|ancestors_in_anatomy_facet=UBERON:0000468,UBERON:0010314,UBERON:0011216,UBERON:0000062,UBERON:0000061,UBERON:0000465,UBERON:0000477,UBERON:0000467,UBERON:0001062,UBERON:0000480,UBERON:0000075,UBERON:0004765,UBERON:0001708,UBERON:0011159,UBERON:0002204,UBERON:0001434,UBERON:0008895,UBERON:0011137,UBERON:0010323
|rna_tube_id=125I4
|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000548,CL:0000066,CL:0002371,CL:0002159,CL:0000255,CL:0002077,CL:0002166
|rna_box=125
|rna_position=I4
|sample_cell_lot=
|sample_cell_catalog=
|sample_company=
|rna_lot_number=MZH7
|rna_catalog_number=
|sample_species=
|sample_strain=
|sample_dev_stage=
|sample_tissue=ANATOMICAL SYSTEM
|sample_donor(cell lot)=MZH7
|sample_sex=male
|sample_age=18
|sample_ethnicity=
|rna_rin=
|rna_od260/230=2.05
|rna_od260/280=2.05
|sample_cell_type=epithelial cell rests of Malassez
|sample_cell_line=
|sample_collaboration=Mitsuhiro Ohshima (Nihon University School of Dentistry)
|sample_experimental_condition=
|sample_disease=
|rna_sample_type=total RNA
|rna_extraction_protocol=OP-RNA-extraction-totalRNA-miRNeasy_Mini-v1.0
|rna_weight_ug=25.1386
|rna_concentration=2.51386
|sample_note=
|profile_hcage=CNhs13551,LSID1033,release012,COMPLETED
|profile_cagescan=
|profile_srnaseq=
|profile_rnaseq=
|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000004,CL:0000012,CL:0000063,CL:0000066,CL:0000144,CL:0000220,CL:0000221,CL:0000255,CL:0000548,CL:0002077,CL:0002159,CL:0002166,CL:0002321,CL:0002371
|ancestors_in_anatomy_facet=UBERON:0000033,UBERON:0000061,UBERON:0000062,UBERON:0000075,UBERON:0000153,UBERON:0000465,UBERON:0000467,UBERON:0000468,UBERON:0000475,UBERON:0000479,UBERON:0000480,UBERON:0000481,UBERON:0000914,UBERON:0000922,UBERON:0000923,UBERON:0000924,UBERON:0000926,UBERON:0001062,UBERON:0001434,UBERON:0001704,UBERON:0001708,UBERON:0002050,UBERON:0002090,UBERON:0002204,UBERON:0002329,UBERON:0002342,UBERON:0002346,UBERON:0002532,UBERON:0002539,UBERON:0003059,UBERON:0003075,UBERON:0003077,UBERON:0003089,UBERON:0003104,UBERON:0003129,UBERON:0004120,UBERON:0004121,UBERON:0004288,UBERON:0004765,UBERON:0005291,UBERON:0005423,UBERON:0005944,UBERON:0006598,UBERON:0007284,UBERON:0008814,UBERON:0008816,UBERON:0009142
|ancestors_in_disease_facet=
|ancestors_in_disease_facet=
|sample_description=
|ancestors_in_ff_facet=FF:0000102,FF:0000210,FF:0000002,FF:0000101,FF:0000001,FF:0000087
|comment=
|created_by=
|creation_date=
|data_phase=2
|datafreeze_phase=2
|def=
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|fantom_cat=http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000066;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000221;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0002077;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0002159;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0002166;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0000075;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0003350;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0008814;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0010323;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0011137
|ffid_belonging_in_development=CL:0000221
|fonse_cell_line=
|fonse_cell_line=
|fonse_cell_line_closure=
|fonse_cell_line_closure=
Line 66: Line 41:
|fonse_treatment=
|fonse_treatment=
|fonse_treatment_closure=
|fonse_treatment_closure=
|top_motifs=
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|hg19bam=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/Mallassez-derived%2520cells%252c%2520donor3.CNhs13551.11930-125I4.hg19.nobarcode.bam
|hg19ctss=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/Mallassez-derived%2520cells%252c%2520donor3.CNhs13551.11930-125I4.hg19.ctss.bed.gz
|hg19fasta=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/Mallassez-derived%2520cells%252c%2520donor3.CNhs13551.11930-125I4.hg19.nobarcode.rdna.fa.gz
|hg38bam=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.primary_cell.hCAGE/Mallassez-derived%2520cells%252c%2520donor3.CNhs13551.11930-125I4.hg38.nobarcode.bam
|hg38ctss=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.primary_cell.hCAGE/Mallassez-derived%2520cells%252c%2520donor3.CNhs13551.11930-125I4.hg38.nobarcode.ctss.bed.gz
|id=FF:11930-125I4
|is_a=EFO:0002091;;FF:0000087
|is_obsolete=
|library_id=CNhs13551
|library_id_phase_based=2:CNhs13551
|microRNAs=
|microRNAs_nn=
|microRNAs_nonnovel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer/#/human#cage;sample;11930
|microRNAs_novel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer_novel/#/human#cage;sample;11930
|name=Mallassez-derived cells, donor3
|namespace=
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|profile_hcage=CNhs13551,LSID1033,release012,COMPLETED
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|rna_box=125
|rna_catalog_number=
|rna_concentration=2.51386
|rna_extraction_protocol=OP-RNA-extraction-totalRNA-miRNeasy_Mini-v1.0
|rna_lot_number=MZH7
|rna_od260/230=2.05
|rna_od260/280=2.05
|rna_position=I4
|rna_rin=
|rna_sample_type=total RNA
|rna_tube_id=125I4
|rna_weight_ug=25.1386
|sample_age=18
|sample_category=primary cells
|sample_cell_catalog=
|sample_cell_line=
|sample_cell_lot=
|sample_cell_type=epithelial cell rests of Malassez
|sample_collaboration=Mitsuhiro Ohshima (Nihon University School of Dentistry)
|sample_company=
|sample_description=
|sample_dev_stage=
|sample_disease=
|sample_donor(cell lot)=MZH7
|sample_ethnicity=
|sample_experimental_condition=
|sample_gostat=GO:0044464;cell part;0!GO:0005622;intracellular;0!GO:0044424;intracellular part;2.23154322965477e-245!GO:0005737;cytoplasm;8.71265433711603e-213!GO:0043226;organelle;1.90742292236391e-183!GO:0043229;intracellular organelle;8.09084782389176e-183!GO:0043231;intracellular membrane-bound organelle;7.89522845745196e-166!GO:0043227;membrane-bound organelle;1.11598864891571e-165!GO:0044422;organelle part;7.24628568276365e-144!GO:0044446;intracellular organelle part;1.86693365130186e-142!GO:0044444;cytoplasmic part;1.36593080437282e-137!GO:0032991;macromolecular complex;6.17929144678854e-100!GO:0030529;ribonucleoprotein complex;1.88784034706489e-92!GO:0044238;primary metabolic process;4.75657810191659e-81!GO:0044237;cellular metabolic process;2.37287894957466e-80!GO:0005515;protein binding;1.18634470292501e-74!GO:0043170;macromolecule metabolic process;1.15608089876836e-72!GO:0003723;RNA binding;2.37072151478324e-70!GO:0005739;mitochondrion;3.81334591399781e-70!GO:0043233;organelle lumen;2.95483612058014e-69!GO:0031974;membrane-enclosed lumen;2.95483612058014e-69!GO:0044428;nuclear part;1.78635298137955e-64!GO:0005634;nucleus;2.20086521518773e-57!GO:0019538;protein metabolic process;9.531208881587e-57!GO:0005840;ribosome;2.13666011578126e-56!GO:0006412;translation;1.28355229876941e-55!GO:0031090;organelle membrane;6.65361357805117e-51!GO:0015031;protein transport;1.28275721438181e-50!GO:0033036;macromolecule localization;4.13030471928184e-50!GO:0003735;structural constituent of ribosome;4.27158186632663e-50!GO:0016043;cellular component organization and biogenesis;5.79965806594629e-50!GO:0044267;cellular protein metabolic process;2.32239117792986e-49!GO:0044260;cellular macromolecule metabolic process;3.08315950443879e-49!GO:0043234;protein complex;7.03060546284816e-49!GO:0006396;RNA processing;5.21399403522225e-48!GO:0044429;mitochondrial part;3.862128326501e-47!GO:0045184;establishment of protein localization;4.38844789262957e-47!GO:0008104;protein localization;1.06612538429148e-46!GO:0009058;biosynthetic process;1.68913949981556e-46!GO:0005829;cytosol;5.41101337231626e-44!GO:0044249;cellular biosynthetic process;4.90797725081928e-43!GO:0043228;non-membrane-bound organelle;4.9747100897689e-43!GO:0043232;intracellular non-membrane-bound organelle;4.9747100897689e-43!GO:0009059;macromolecule biosynthetic process;5.03040882846216e-43!GO:0033279;ribosomal subunit;1.71499789337409e-42!GO:0031981;nuclear lumen;3.74592937236602e-40!GO:0031967;organelle envelope;4.11867899153892e-40!GO:0031975;envelope;1.05535439438394e-39!GO:0046907;intracellular transport;2.14426777341222e-39!GO:0016071;mRNA metabolic process;1.35901385822015e-36!GO:0022613;ribonucleoprotein complex biogenesis and assembly;2.47932396674485e-36!GO:0065003;macromolecular complex assembly;1.55996280757491e-35!GO:0008380;RNA splicing;3.19475529442807e-35!GO:0043283;biopolymer metabolic process;1.82868275692657e-34!GO:0006886;intracellular protein transport;3.31508895423786e-33!GO:0006397;mRNA processing;4.97636300265847e-32!GO:0010467;gene expression;7.82921013346829e-32!GO:0022607;cellular component assembly;1.94774764915144e-31!GO:0006996;organelle organization and biogenesis;4.47257695681593e-31!GO:0005830;cytosolic ribosome (sensu Eukaryota);9.62228345953963e-31!GO:0005740;mitochondrial envelope;3.83916688485584e-30!GO:0031966;mitochondrial membrane;6.22113294016599e-28!GO:0006139;nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;2.26156589605403e-27!GO:0019866;organelle inner membrane;3.40980896654771e-26!GO:0044445;cytosolic part;1.06984847281266e-25!GO:0005681;spliceosome;1.09181117642223e-25!GO:0051649;establishment of cellular localization;2.05355086662258e-25!GO:0051641;cellular localization;3.47189003484892e-25!GO:0005743;mitochondrial inner membrane;7.38341719288914e-25!GO:0005654;nucleoplasm;1.06629820750166e-22!GO:0000166;nucleotide binding;1.22943223773098e-22!GO:0016462;pyrophosphatase activity;1.73200095345364e-22!GO:0016818;hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides;1.83072587199406e-22!GO:0006119;oxidative phosphorylation;1.84818035081937e-22!GO:0015935;small ribosomal subunit;2.06541706869869e-22!GO:0016817;hydrolase activity, acting on acid anhydrides;2.91868345867846e-22!GO:0022618;protein-RNA complex assembly;7.04359480975609e-22!GO:0006457;protein folding;1.36352106029109e-21!GO:0017111;nucleoside-triphosphatase activity;1.36678406987076e-21!GO:0015934;large ribosomal subunit;4.47955535872006e-21!GO:0006259;DNA metabolic process;6.20947722761365e-21!GO:0031980;mitochondrial lumen;1.02540963000124e-20!GO:0005759;mitochondrial matrix;1.02540963000124e-20!GO:0044455;mitochondrial membrane part;1.4327284195117e-20!GO:0012505;endomembrane system;1.45767925548049e-20!GO:0005730;nucleolus;5.75360901548696e-20!GO:0005783;endoplasmic reticulum;1.49573342593378e-19!GO:0007049;cell cycle;2.19098143213207e-19!GO:0016874;ligase activity;2.51234482983432e-19!GO:0044451;nucleoplasm part;2.64158312008008e-18!GO:0043285;biopolymer catabolic process;2.96694605161359e-18!GO:0051603;proteolysis involved in cellular protein catabolic process;7.72733804864864e-18!GO:0048770;pigment granule;1.29922755442898e-17!GO:0042470;melanosome;1.29922755442898e-17!GO:0019941;modification-dependent protein catabolic process;1.60233998267205e-17!GO:0043632;modification-dependent macromolecule catabolic process;1.60233998267205e-17!GO:0044257;cellular protein catabolic process;2.50259649345765e-17!GO:0006512;ubiquitin cycle;3.08684427153498e-17!GO:0006511;ubiquitin-dependent protein catabolic process;3.96718972322263e-17!GO:0044265;cellular macromolecule catabolic process;4.13344940801461e-17!GO:0000502;proteasome complex (sensu Eukaryota);7.37113885971076e-17!GO:0030163;protein catabolic process;8.36101721558398e-17!GO:0009057;macromolecule catabolic process;1.65364283666007e-16!GO:0012501;programmed cell death;1.85269500191366e-16!GO:0017076;purine nucleotide binding;2.27734285677082e-16!GO:0005843;cytosolic small ribosomal subunit (sensu Eukaryota);2.76659218347687e-16!GO:0016655;oxidoreductase activity, acting on NADH or NADPH, quinone or similar compound as acceptor;3.83112657147751e-16!GO:0006915;apoptosis;4.34206289181708e-16!GO:0008135;translation factor activity, nucleic acid binding;4.42560100111682e-16!GO:0044248;cellular catabolic process;5.21220465372195e-16!GO:0005761;mitochondrial ribosome;5.23522934347137e-16!GO:0000313;organellar ribosome;5.23522934347137e-16!GO:0032553;ribonucleotide binding;5.84834867980004e-16!GO:0032555;purine ribonucleotide binding;5.84834867980004e-16!GO:0044432;endoplasmic reticulum part;6.3469975881192e-16!GO:0051186;cofactor metabolic process;6.40584491358503e-16!GO:0005794;Golgi apparatus;7.209427935697e-16!GO:0006605;protein targeting;7.313305102856e-16!GO:0005746;mitochondrial respiratory chain;8.10773737639661e-16!GO:0042254;ribosome biogenesis and assembly;3.16870047324066e-15!GO:0051082;unfolded protein binding;5.7033737372431e-15!GO:0006413;translational initiation;6.16305253092079e-15!GO:0005842;cytosolic large ribosomal subunit (sensu Eukaryota);6.62368108864529e-15!GO:0050136;NADH dehydrogenase (quinone) activity;7.18006059755486e-15!GO:0003954;NADH dehydrogenase activity;7.18006059755486e-15!GO:0008137;NADH dehydrogenase (ubiquinone) activity;7.18006059755486e-15!GO:0048193;Golgi vesicle transport;7.41484942578982e-15!GO:0008219;cell death;1.27472024109105e-14!GO:0016265;death;1.27472024109105e-14!GO:0003743;translation initiation factor activity;3.07204030806865e-14!GO:0016651;oxidoreductase activity, acting on NADH or NADPH;3.75579415752048e-14!GO:0022402;cell cycle process;6.82387531782065e-14!GO:0006974;response to DNA damage stimulus;1.16820104751978e-13!GO:0016192;vesicle-mediated transport;1.26596705520982e-13!GO:0000398;nuclear mRNA splicing, via spliceosome;1.27773596181414e-13!GO:0000375;RNA splicing, via transesterification reactions;1.27773596181414e-13!GO:0000377;RNA splicing, via transesterification reactions with bulged adenosine as nucleophile;1.27773596181414e-13!GO:0008134;transcription factor binding;1.99462983972067e-13!GO:0006732;coenzyme metabolic process;2.76902349240918e-13!GO:0003676;nucleic acid binding;3.20842353817349e-13!GO:0000278;mitotic cell cycle;3.23371077035661e-13!GO:0042775;organelle ATP synthesis coupled electron transport;3.49153543950436e-13!GO:0042773;ATP synthesis coupled electron transport;3.49153543950436e-13!GO:0030964;NADH dehydrogenase complex (quinone);4.2306219809697e-13!GO:0045271;respiratory chain complex I;4.2306219809697e-13!GO:0005747;mitochondrial respiratory chain complex I;4.2306219809697e-13!GO:0043412;biopolymer modification;4.78806482418582e-13!GO:0006120;mitochondrial electron transport, NADH to ubiquinone;1.21526565229178e-12!GO:0042175;nuclear envelope-endoplasmic reticulum network;2.92360491978137e-12!GO:0043067;regulation of programmed cell death;3.44467198160976e-12!GO:0042981;regulation of apoptosis;4.29746088287655e-12!GO:0009055;electron carrier activity;6.23006103005436e-12!GO:0006461;protein complex assembly;6.59636896019646e-12!GO:0006446;regulation of translational initiation;6.84227170454686e-12!GO:0005789;endoplasmic reticulum membrane;7.14757904945334e-12!GO:0006464;protein modification process;7.3762375267937e-12!GO:0008565;protein transporter activity;1.41151108418356e-11!GO:0005524;ATP binding;1.68671331376792e-11!GO:0030554;adenyl nucleotide binding;1.84911191112119e-11!GO:0032559;adenyl ribonucleotide binding;3.7477346393237e-11!GO:0009259;ribonucleotide metabolic process;4.2263152260985e-11!GO:0003924;GTPase activity;4.41644875759517e-11!GO:0009056;catabolic process;4.46893215829575e-11!GO:0016879;ligase activity, forming carbon-nitrogen bonds;4.48045018834099e-11!GO:0006281;DNA repair;5.59154538358449e-11!GO:0016070;RNA metabolic process;8.45784647032296e-11!GO:0005635;nuclear envelope;1.15852640429559e-10!GO:0008639;small protein conjugating enzyme activity;1.25934653630998e-10!GO:0019787;small conjugating protein ligase activity;1.45544537716342e-10!GO:0016604;nuclear body;1.7324533088962e-10!GO:0004842;ubiquitin-protein ligase activity;2.02905271629298e-10!GO:0006163;purine nucleotide metabolic process;2.13438194800065e-10!GO:0043687;post-translational protein modification;2.28336255286851e-10!GO:0006399;tRNA metabolic process;2.69476496497708e-10!GO:0006913;nucleocytoplasmic transport;4.4853132056251e-10!GO:0009150;purine ribonucleotide metabolic process;5.20213546002126e-10!GO:0043123;positive regulation of I-kappaB kinase/NF-kappaB cascade;5.67677652480504e-10!GO:0004386;helicase activity;6.62273283350852e-10!GO:0009719;response to endogenous stimulus;7.19483979714074e-10!GO:0006364;rRNA processing;7.91540873089337e-10!GO:0009260;ribonucleotide biosynthetic process;8.07162323577389e-10!GO:0009141;nucleoside triphosphate metabolic process;9.64635125433064e-10!GO:0051169;nuclear transport;9.92479231689575e-10!GO:0000074;regulation of progression through cell cycle;1.0258405008152e-09!GO:0016072;rRNA metabolic process;1.24098087708939e-09!GO:0044453;nuclear membrane part;1.24247742170178e-09!GO:0046961;hydrogen ion transporting ATPase activity, rotational mechanism;1.29576138043599e-09!GO:0051726;regulation of cell cycle;1.43748014837082e-09!GO:0031965;nuclear membrane;1.45498407471054e-09!GO:0006164;purine nucleotide biosynthetic process;1.48149779748398e-09!GO:0016881;acid-amino acid ligase activity;1.553104805963e-09!GO:0043122;regulation of I-kappaB kinase/NF-kappaB cascade;1.69406775336896e-09!GO:0042623;ATPase activity, coupled;1.75786417726525e-09!GO:0000087;M phase of mitotic cell cycle;1.97427153120472e-09!GO:0007249;I-kappaB kinase/NF-kappaB cascade;2.29987788573435e-09!GO:0048475;coated membrane;2.3174424596768e-09!GO:0030117;membrane coat;2.3174424596768e-09!GO:0046933;hydrogen ion transporting ATP synthase activity, rotational mechanism;2.44280276753169e-09!GO:0005694;chromosome;2.66984789600164e-09!GO:0016887;ATPase activity;3.35650510298596e-09!GO:0009152;purine ribonucleotide biosynthetic process;3.42765567659926e-09!GO:0007067;mitosis;3.47688150761407e-09!GO:0009199;ribonucleoside triphosphate metabolic process;3.88053811596519e-09!GO:0005793;ER-Golgi intermediate compartment;4.02432515486512e-09!GO:0005768;endosome;4.83206551154394e-09!GO:0009142;nucleoside triphosphate biosynthetic process;7.68991400733841e-09!GO:0009201;ribonucleoside triphosphate biosynthetic process;7.68991400733841e-09!GO:0008026;ATP-dependent helicase activity;8.16273820554017e-09!GO:0051188;cofactor biosynthetic process;8.5639235960236e-09!GO:0048523;negative regulation of cellular process;8.80084142468538e-09!GO:0009205;purine ribonucleoside triphosphate metabolic process;8.87309110422216e-09!GO:0009144;purine nucleoside triphosphate metabolic process;8.87309110422216e-09!GO:0030120;vesicle coat;9.66704549822108e-09!GO:0030662;coated vesicle membrane;9.66704549822108e-09!GO:0043069;negative regulation of programmed cell death;1.03809258147851e-08!GO:0055086;nucleobase, nucleoside and nucleotide metabolic process;1.19128714873705e-08!GO:0015986;ATP synthesis coupled proton transport;1.42946599775326e-08!GO:0015985;energy coupled proton transport, down electrochemical gradient;1.42946599775326e-08!GO:0016607;nuclear speck;1.52476063197694e-08!GO:0022403;cell cycle phase;1.5860052293177e-08!GO:0005525;GTP binding;1.73767429253112e-08!GO:0009206;purine ribonucleoside triphosphate biosynthetic process;1.77331050857771e-08!GO:0009145;purine nucleoside triphosphate biosynthetic process;1.77331050857771e-08!GO:0051246;regulation of protein metabolic process;1.87867012412704e-08!GO:0006888;ER to Golgi vesicle-mediated transport;2.20021048096999e-08!GO:0030532;small nuclear ribonucleoprotein complex;2.51055854926114e-08!GO:0051301;cell division;2.67774238761704e-08!GO:0043066;negative regulation of apoptosis;3.03110936300838e-08!GO:0017038;protein import;3.79263784580509e-08!GO:0051276;chromosome organization and biogenesis;3.82252748500808e-08!GO:0007005;mitochondrion organization and biogenesis;4.18452051688236e-08!GO:0044427;chromosomal part;4.91637050189947e-08!GO:0006916;anti-apoptosis;5.62515485826597e-08!GO:0009060;aerobic respiration;5.96296063421619e-08!GO:0016779;nucleotidyltransferase activity;6.07740676659797e-08!GO:0016787;hydrolase activity;6.68950663557048e-08!GO:0005643;nuclear pore;7.19930706479446e-08!GO:0006325;establishment and/or maintenance of chromatin architecture;8.43015903082056e-08!GO:0003712;transcription cofactor activity;1.03449493705074e-07!GO:0065002;intracellular protein transport across a membrane;1.12452730761021e-07!GO:0046034;ATP metabolic process;1.25506537069734e-07!GO:0009117;nucleotide metabolic process;1.29357733965923e-07!GO:0016876;ligase activity, forming aminoacyl-tRNA and related compounds;1.29357733965923e-07!GO:0004812;aminoacyl-tRNA ligase activity;1.29357733965923e-07!GO:0016875;ligase activity, forming carbon-oxygen bonds;1.29357733965923e-07!GO:0043038;amino acid activation;1.56924820450446e-07!GO:0006418;tRNA aminoacylation for protein translation;1.56924820450446e-07!GO:0043039;tRNA aminoacylation;1.56924820450446e-07!GO:0048519;negative regulation of biological process;1.67898540072987e-07!GO:0006754;ATP biosynthetic process;2.10411447957264e-07!GO:0006753;nucleoside phosphate metabolic process;2.10411447957264e-07!GO:0009108;coenzyme biosynthetic process;2.14740292113739e-07!GO:0006323;DNA packaging;2.15432519767109e-07!GO:0019829;cation-transporting ATPase activity;2.39864388102739e-07!GO:0045333;cellular respiration;2.40765109983161e-07!GO:0006260;DNA replication;2.57134328871813e-07!GO:0044431;Golgi apparatus part;3.06511072843101e-07!GO:0050657;nucleic acid transport;4.31709972269895e-07!GO:0051236;establishment of RNA localization;4.31709972269895e-07!GO:0050658;RNA transport;4.31709972269895e-07!GO:0016491;oxidoreductase activity;4.37536012717721e-07!GO:0006403;RNA localization;4.73134117231207e-07!GO:0032446;protein modification by small protein conjugation;4.76473753929251e-07!GO:0032561;guanyl ribonucleotide binding;4.97443600288421e-07!GO:0019001;guanyl nucleotide binding;4.97443600288421e-07!GO:0006099;tricarboxylic acid cycle;4.99476571758033e-07!GO:0046356;acetyl-CoA catabolic process;4.99476571758033e-07!GO:0006752;group transfer coenzyme metabolic process;6.72201256033669e-07!GO:0000279;M phase;7.29899348275208e-07!GO:0016567;protein ubiquitination;7.29899348275208e-07!GO:0005839;proteasome core complex (sensu Eukaryota);1.43119343645856e-06!GO:0000785;chromatin;1.48227563505026e-06!GO:0015078;hydrogen ion transmembrane transporter activity;1.4965302656234e-06!GO:0006084;acetyl-CoA metabolic process;1.57493274916539e-06!GO:0016591;DNA-directed RNA polymerase II, holoenzyme;1.75632992162472e-06!GO:0015630;microtubule cytoskeleton;1.79916788392499e-06!GO:0016469;proton-transporting two-sector ATPase complex;1.87221758309161e-06!GO:0016740;transferase activity;2.09389424900894e-06!GO:0045259;proton-transporting ATP synthase complex;2.10194097630046e-06!GO:0065004;protein-DNA complex assembly;2.49197056455995e-06!GO:0051187;cofactor catabolic process;2.53201814650243e-06!GO:0000245;spliceosome assembly;2.85651814469413e-06!GO:0046930;pore complex;2.87662605621408e-06!GO:0048522;positive regulation of cellular process;3.60441077763427e-06!GO:0043623;cellular protein complex assembly;3.61659390149342e-06!GO:0009109;coenzyme catabolic process;3.61988544720372e-06!GO:0007243;protein kinase cascade;3.940959100852e-06!GO:0031252;leading edge;5.19925652102943e-06!GO:0031202;RNA splicing factor activity, transesterification mechanism;6.20807192994935e-06!GO:0004298;threonine endopeptidase activity;6.2979797284951e-06!GO:0051170;nuclear import;6.31971915014259e-06!GO:0006613;cotranslational protein targeting to membrane;6.31971915014259e-06!GO:0044440;endosomal part;6.88144015857669e-06!GO:0010008;endosome membrane;6.88144015857669e-06!GO:0015931;nucleobase, nucleoside, nucleotide and nucleic acid transport;8.2552630384673e-06!GO:0006333;chromatin assembly or disassembly;8.58116995004362e-06!GO:0000139;Golgi membrane;8.87205006832207e-06!GO:0016853;isomerase activity;9.60787834512096e-06!GO:0050794;regulation of cellular process;9.97517254112827e-06!GO:0009967;positive regulation of signal transduction;1.0079019160775e-05!GO:0043566;structure-specific DNA binding;1.15733526770391e-05!GO:0051028;mRNA transport;1.29381639392398e-05!GO:0031988;membrane-bound vesicle;1.38802810100177e-05!GO:0016023;cytoplasmic membrane-bound vesicle;1.50448087805454e-05!GO:0006366;transcription from RNA polymerase II promoter;1.57090975846258e-05!GO:0005762;mitochondrial large ribosomal subunit;1.73267171749756e-05!GO:0000315;organellar large ribosomal subunit;1.73267171749756e-05!GO:0005770;late endosome;1.77820801359462e-05!GO:0003755;peptidyl-prolyl cis-trans isomerase activity;1.83459643564022e-05!GO:0006606;protein import into nucleus;2.00457548650624e-05!GO:0016859;cis-trans isomerase activity;2.19738125013037e-05!GO:0000314;organellar small ribosomal subunit;2.38260170065337e-05!GO:0005763;mitochondrial small ribosomal subunit;2.38260170065337e-05!GO:0030118;clathrin coat;2.41075952467461e-05!GO:0003724;RNA helicase activity;2.57388946118045e-05!GO:0005798;Golgi-associated vesicle;2.68588994662077e-05!GO:0008654;phospholipid biosynthetic process;2.78646999825815e-05!GO:0005773;vacuole;3.27497183236251e-05!GO:0005788;endoplasmic reticulum lumen;3.27497183236251e-05!GO:0003697;single-stranded DNA binding;3.5045038864694e-05!GO:0003899;DNA-directed RNA polymerase activity;4.11409156536206e-05!GO:0005852;eukaryotic translation initiation factor 3 complex;4.11409156536206e-05!GO:0006612;protein targeting to membrane;4.11409156536206e-05!GO:0005667;transcription factor complex;4.70262691775414e-05!GO:0043021;ribonucleoprotein binding;5.01180487908745e-05!GO:0043065;positive regulation of apoptosis;5.33224664407297e-05!GO:0031982;vesicle;5.57969625852137e-05!GO:0045454;cell redox homeostasis;5.59767039777493e-05!GO:0051789;response to protein stimulus;6.08861147349898e-05!GO:0006986;response to unfolded protein;6.08861147349898e-05!GO:0005769;early endosome;6.33389469756208e-05!GO:0007010;cytoskeleton organization and biogenesis;6.61842910968482e-05!GO:0006091;generation of precursor metabolites and energy;6.9171226522664e-05!GO:0019843;rRNA binding;7.03282171150923e-05!GO:0043068;positive regulation of programmed cell death;7.70687799402091e-05!GO:0031410;cytoplasmic vesicle;8.72982536402715e-05!GO:0006793;phosphorus metabolic process;8.90169148374696e-05!GO:0006796;phosphate metabolic process;8.90169148374696e-05!GO:0030119;AP-type membrane coat adaptor complex;9.69957334696292e-05!GO:0030867;rough endoplasmic reticulum membrane;9.80933431163711e-05!GO:0065009;regulation of a molecular function;0.000107179548959991!GO:0005813;centrosome;0.000109566627707977!GO:0006334;nucleosome assembly;0.000109927807972177!GO:0000151;ubiquitin ligase complex;0.000110962426564139!GO:0031968;organelle outer membrane;0.000119783408707089!GO:0045786;negative regulation of progression through cell cycle;0.000126010806023926!GO:0042802;identical protein binding;0.000129759587664565!GO:0015077;monovalent inorganic cation transmembrane transporter activity;0.000148918066302444!GO:0019867;outer membrane;0.000154238180624013!GO:0019899;enzyme binding;0.000159126649018229!GO:0016568;chromatin modification;0.000186302418956009!GO:0000323;lytic vacuole;0.00019245927715756!GO:0005764;lysosome;0.00019245927715756!GO:0030131;clathrin adaptor complex;0.000204668368104654!GO:0008632;apoptotic program;0.000207711583273138!GO:0044452;nucleolar part;0.000209061261794858!GO:0048471;perinuclear region of cytoplasm;0.000220083220680016!GO:0016126;sterol biosynthetic process;0.000225043498993983!GO:0051427;hormone receptor binding;0.000226779047567065!GO:0008092;cytoskeletal protein binding;0.000255909393189555!GO:0005819;spindle;0.000262251524953283!GO:0016310;phosphorylation;0.000279306117292075!GO:0005885;Arp2/3 protein complex;0.000280799784462906!GO:0016772;transferase activity, transferring phosphorus-containing groups;0.000291439341125432!GO:0031497;chromatin assembly;0.000293618462911222!GO:0003713;transcription coactivator activity;0.000305418217624845!GO:0006626;protein targeting to mitochondrion;0.000334702465159078!GO:0005815;microtubule organizing center;0.000360469180505617!GO:0048518;positive regulation of biological process;0.000364021427100815!GO:0005048;signal sequence binding;0.000364021427100815!GO:0030036;actin cytoskeleton organization and biogenesis;0.000383448277120923!GO:0001726;ruffle;0.00039856892367626!GO:0030658;transport vesicle membrane;0.000418020800374513!GO:0033178;proton-transporting two-sector ATPase complex, catalytic domain;0.000418020800374513!GO:0005741;mitochondrial outer membrane;0.000418020800374513!GO:0005753;mitochondrial proton-transporting ATP synthase complex;0.000421563898263788!GO:0035257;nuclear hormone receptor binding;0.00046222263421063!GO:0005838;proteasome regulatory particle (sensu Eukaryota);0.000484901787068621!GO:0005905;coated pit;0.000492413708904785!GO:0005856;cytoskeleton;0.000518986534815935!GO:0031324;negative regulation of cellular metabolic process;0.000557377232924216!GO:0009165;nucleotide biosynthetic process;0.000559087427920498!GO:0006950;response to stress;0.000563915244527818!GO:0008186;RNA-dependent ATPase activity;0.000577973326617813!GO:0015980;energy derivation by oxidation of organic compounds;0.000583996137042661!GO:0051329;interphase of mitotic cell cycle;0.000583996137042661!GO:0008033;tRNA processing;0.000584178203009118!GO:0048468;cell development;0.000584522291623458!GO:0030530;heterogeneous nuclear ribonucleoprotein complex;0.000612480980316447!GO:0016197;endosome transport;0.000615517471529699!GO:0016044;membrane organization and biogenesis;0.000618258126825782!GO:0008250;oligosaccharyl transferase complex;0.000635895630373442!GO:0031072;heat shock protein binding;0.000673334686751497!GO:0004576;oligosaccharyl transferase activity;0.000711376072241618!GO:0045261;proton-transporting ATP synthase complex, catalytic core F(1);0.000726942591130307!GO:0043681;protein import into mitochondrion;0.000791742011942928!GO:0050662;coenzyme binding;0.000796130040346124!GO:0016363;nuclear matrix;0.000798645703578924!GO:0000079;regulation of cyclin-dependent protein kinase activity;0.000818633297293808!GO:0005791;rough endoplasmic reticulum;0.000823057667831153!GO:0051920;peroxiredoxin activity;0.000823940971581226!GO:0006839;mitochondrial transport;0.000826126175965849!GO:0004579;dolichyl-diphosphooligosaccharide-protein glycotransferase activity;0.000846010422019041!GO:0006383;transcription from RNA polymerase III promoter;0.000851023521250775!GO:0051168;nuclear export;0.000968303267806639!GO:0007264;small GTPase mediated signal transduction;0.00100945084425957!GO:0006917;induction of apoptosis;0.00103283743374074!GO:0051252;regulation of RNA metabolic process;0.00109255594139778!GO:0033116;ER-Golgi intermediate compartment membrane;0.00110440581727312!GO:0003714;transcription corepressor activity;0.00110690210187354!GO:0030132;clathrin coat of coated pit;0.00114061471781365!GO:0003690;double-stranded DNA binding;0.00121239331098176!GO:0000075;cell cycle checkpoint;0.00124772979589916!GO:0016679;oxidoreductase activity, acting on diphenols and related substances as donors;0.00128897324774549!GO:0016681;oxidoreductase activity, acting on diphenols and related substances as donors, cytochrome as acceptor;0.00128897324774549!GO:0008121;ubiquinol-cytochrome-c reductase activity;0.00128897324774549!GO:0006891;intra-Golgi vesicle-mediated transport;0.0012957386031735!GO:0048500;signal recognition particle;0.00130655194625864!GO:0004004;ATP-dependent RNA helicase activity;0.00137317869972335!GO:0007088;regulation of mitosis;0.00144645931620195!GO:0012502;induction of programmed cell death;0.00146445479843868!GO:0046483;heterocycle metabolic process;0.00148036248496772!GO:0030133;transport vesicle;0.00149941857810508!GO:0030660;Golgi-associated vesicle membrane;0.00151453950296092!GO:0051325;interphase;0.00156256482292398!GO:0009892;negative regulation of metabolic process;0.00159681823925428!GO:0030125;clathrin vesicle coat;0.00162574412489553!GO:0030665;clathrin coated vesicle membrane;0.00162574412489553!GO:0042625;ATPase activity, coupled to transmembrane movement of ions;0.00168620817753233!GO:0030029;actin filament-based process;0.00174095374816454!GO:0051087;chaperone binding;0.00175055423623206!GO:0008610;lipid biosynthetic process;0.00182114165186158!GO:0050789;regulation of biological process;0.00182280462781911!GO:0018196;peptidyl-asparagine modification;0.00183442611442636!GO:0018279;protein amino acid N-linked glycosylation via asparagine;0.00183442611442636!GO:0046474;glycerophospholipid biosynthetic process;0.00203589171918736!GO:0003729;mRNA binding;0.00205327083283493!GO:0050790;regulation of catalytic activity;0.00207082175746554!GO:0006402;mRNA catabolic process;0.00223010568189641!GO:0000307;cyclin-dependent protein kinase holoenzyme complex;0.00224067410100859!GO:0030663;COPI coated vesicle membrane;0.00226231404966844!GO:0030126;COPI vesicle coat;0.00226231404966844!GO:0008234;cysteine-type peptidase activity;0.00233477235840547!GO:0006695;cholesterol biosynthetic process;0.00233924233506061!GO:0016281;eukaryotic translation initiation factor 4F complex;0.00247558330952661!GO:0045934;negative regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;0.00247885701505437!GO:0046489;phosphoinositide biosynthetic process;0.00260381764976447!GO:0030880;RNA polymerase complex;0.00261208319991187!GO:0008243;plasminogen activator activity;0.00273822199691096!GO:0008312;7S RNA binding;0.00283543078012594!GO:0015631;tubulin binding;0.00283951423459871!GO:0009116;nucleoside metabolic process;0.00298938908500545!GO:0006614;SRP-dependent cotranslational protein targeting to membrane;0.00306993210111287!GO:0045047;protein targeting to ER;0.00306993210111287!GO:0006401;RNA catabolic process;0.00306993210111287!GO:0007006;mitochondrial membrane organization and biogenesis;0.0031030663432802!GO:0005786;signal recognition particle, endoplasmic reticulum targeting;0.00321931717840634!GO:0016765;transferase activity, transferring alkyl or aryl (other than methyl) groups;0.00327444498364538!GO:0006302;double-strand break repair;0.00327608511760509!GO:0016564;transcription repressor activity;0.00334177693198253!GO:0005684;U2-dependent spliceosome;0.00351270632645!GO:0006979;response to oxidative stress;0.00352672839910214!GO:0006414;translational elongation;0.00352672839910214!GO:0007051;spindle organization and biogenesis;0.00355771138437119!GO:0046467;membrane lipid biosynthetic process;0.00377858739497212!GO:0030031;cell projection biogenesis;0.00385374135851378!GO:0045263;proton-transporting ATP synthase complex, coupling factor F(o);0.00392476462629471!GO:0033177;proton-transporting two-sector ATPase complex, proton-transporting domain;0.00392476462629471!GO:0016563;transcription activator activity;0.00400540995029625!GO:0015405;P-P-bond-hydrolysis-driven transmembrane transporter activity;0.00415211064489858!GO:0015399;primary active transmembrane transporter activity;0.00415211064489858!GO:0051540;metal cluster binding;0.00422426366783739!GO:0051536;iron-sulfur cluster binding;0.00422426366783739!GO:0008637;apoptotic mitochondrial changes;0.00446816721245922!GO:0016862;intramolecular oxidoreductase activity, interconverting keto- and enol-groups;0.00468719158674208!GO:0006261;DNA-dependent DNA replication;0.00469485671811122!GO:0016272;prefoldin complex;0.00484442142248838!GO:0043488;regulation of mRNA stability;0.00489116842717776!GO:0043487;regulation of RNA stability;0.00489116842717776!GO:0015992;proton transport;0.0050331088953437!GO:0005874;microtubule;0.00517081759553841!GO:0030027;lamellipodium;0.00534809796731927!GO:0055029;nuclear DNA-directed RNA polymerase complex;0.00570082996181257!GO:0000428;DNA-directed RNA polymerase complex;0.00570082996181257!GO:0008139;nuclear localization sequence binding;0.00572269354835298!GO:0006818;hydrogen transport;0.00579515273680953!GO:0006417;regulation of translation;0.00591563086488728!GO:0051128;regulation of cellular component organization and biogenesis;0.00617870190178475!GO:0003684;damaged DNA binding;0.00621079005195128!GO:0006890;retrograde vesicle-mediated transport, Golgi to ER;0.00629005429953957!GO:0035258;steroid hormone receptor binding;0.00632745069029634!GO:0008361;regulation of cell size;0.00649345536766346!GO:0051101;regulation of DNA binding;0.00649345536766346!GO:0000049;tRNA binding;0.00649963422172969!GO:0030137;COPI-coated vesicle;0.00671672328335794!GO:0003711;transcription elongation regulator activity;0.00709090850484121!GO:0017166;vinculin binding;0.00728854815400232!GO:0030134;ER to Golgi transport vesicle;0.00750811162307441!GO:0008094;DNA-dependent ATPase activity;0.00761374790178163!GO:0016408;C-acyltransferase activity;0.0076649082940844!GO:0032984;macromolecular complex disassembly;0.00790014830721116!GO:0051052;regulation of DNA metabolic process;0.00793075841128886!GO:0006357;regulation of transcription from RNA polymerase II promoter;0.00837803053401369!GO:0043624;cellular protein complex disassembly;0.00841697719163895!GO:0016627;oxidoreductase activity, acting on the CH-CH group of donors;0.00849249537140513!GO:0030127;COPII vesicle coat;0.00849850065882495!GO:0012507;ER to Golgi transport vesicle membrane;0.00849850065882495!GO:0007034;vacuolar transport;0.00849850065882495!GO:0016049;cell growth;0.00885766099508354!GO:0009112;nucleobase metabolic process;0.00893131404503201!GO:0000059;protein import into nucleus, docking;0.00893131404503201!GO:0019752;carboxylic acid metabolic process;0.00896442198635578!GO:0006082;organic acid metabolic process;0.00917328527634952!GO:0051098;regulation of binding;0.00917328527634952!GO:0005149;interleukin-1 receptor binding;0.00924616023863699!GO:0000786;nucleosome;0.00932112526910308!GO:0048487;beta-tubulin binding;0.00988156367019021!GO:0030032;lamellipodium biogenesis;0.0101066328499307!GO:0030176;integral to endoplasmic reticulum membrane;0.0102150423321127!GO:0048037;cofactor binding;0.0102150423321127!GO:0045045;secretory pathway;0.0102150423321127!GO:0030216;keratinocyte differentiation;0.0102150423321127!GO:0016481;negative regulation of transcription;0.0106522556753641!GO:0000339;RNA cap binding;0.0106522556753641!GO:0000776;kinetochore;0.0106959293479238!GO:0022406;membrane docking;0.0111521369669872!GO:0048278;vesicle docking;0.0111521369669872!GO:0030659;cytoplasmic vesicle membrane;0.0111727262687594!GO:0030521;androgen receptor signaling pathway;0.011250081494143!GO:0043022;ribosome binding;0.0115050276194742!GO:0001533;cornified envelope;0.0115552286514077!GO:0000082;G1/S transition of mitotic cell cycle;0.0115552286514077!GO:0022884;macromolecule transmembrane transporter activity;0.0116476227809382!GO:0015450;P-P-bond-hydrolysis-driven protein transmembrane transporter activity;0.0116476227809382!GO:0003678;DNA helicase activity;0.0116683766882862!GO:0043154;negative regulation of caspase activity;0.0116683766882862!GO:0005832;chaperonin-containing T-complex;0.0118137410130021!GO:0008180;signalosome;0.0119862348775811!GO:0006595;polyamine metabolic process;0.0120494535108075!GO:0016780;phosphotransferase activity, for other substituted phosphate groups;0.0123500033945184!GO:0006650;glycerophospholipid metabolic process;0.0123960504306772!GO:0016251;general RNA polymerase II transcription factor activity;0.0128624484984579!GO:0001836;release of cytochrome c from mitochondria;0.0128624484984579!GO:0007093;mitotic cell cycle checkpoint;0.013168072580868!GO:0048146;positive regulation of fibroblast proliferation;0.0133157198965725!GO:0006368;RNA elongation from RNA polymerase II promoter;0.0134384539653442!GO:0005862;muscle thin filament tropomyosin;0.0134384539653442!GO:0048144;fibroblast proliferation;0.0134893365726908!GO:0048145;regulation of fibroblast proliferation;0.0134893365726908!GO:0005869;dynactin complex;0.0135861768682585!GO:0030833;regulation of actin filament polymerization;0.01437814988993!GO:0008320;protein transmembrane transporter activity;0.0144754952144585!GO:0043241;protein complex disassembly;0.0146077634529192!GO:0022890;inorganic cation transmembrane transporter activity;0.0146184643211861!GO:0006289;nucleotide-excision repair;0.0151609408587874!GO:0001558;regulation of cell growth;0.0151996149538078!GO:0006310;DNA recombination;0.0152070285770664!GO:0030384;phosphoinositide metabolic process;0.0152093434398788!GO:0006904;vesicle docking during exocytosis;0.0154450576249!GO:0008022;protein C-terminus binding;0.015949365086157!GO:0003756;protein disulfide isomerase activity;0.016073488176667!GO:0016864;intramolecular oxidoreductase activity, transposing S-S bonds;0.016073488176667!GO:0000209;protein polyubiquitination;0.0161418702840487!GO:0005758;mitochondrial intermembrane space;0.0162043818252931!GO:0005657;replication fork;0.0163687956346055!GO:0007021;tubulin folding;0.0165631622677641!GO:0008283;cell proliferation;0.0166451393003181!GO:0046519;sphingoid metabolic process;0.0171237860742486!GO:0006518;peptide metabolic process;0.0171401875578751!GO:0006892;post-Golgi vesicle-mediated transport;0.017589670753041!GO:0045893;positive regulation of transcription, DNA-dependent;0.0180122508254581!GO:0008047;enzyme activator activity;0.0183136977449778!GO:0051338;regulation of transferase activity;0.0183662585791658!GO:0006352;transcription initiation;0.0185272881273901!GO:0006509;membrane protein ectodomain proteolysis;0.0185704973863848!GO:0033619;membrane protein proteolysis;0.0185704973863848!GO:0008629;induction of apoptosis by intracellular signals;0.0185917446886028!GO:0051287;NAD binding;0.0185917446886028!GO:0050750;low-density lipoprotein receptor binding;0.0186011101413332!GO:0022411;cellular component disassembly;0.0188553105671057!GO:0009166;nucleotide catabolic process;0.0189372055086468!GO:0050681;androgen receptor binding;0.0191140692102189!GO:0006118;electron transport;0.0195368559838131!GO:0004197;cysteine-type endopeptidase activity;0.0195559497761427!GO:0019205;nucleobase, nucleoside, nucleotide kinase activity;0.0204564291876042!GO:0016676;oxidoreductase activity, acting on heme group of donors, oxygen as acceptor;0.0204564291876042!GO:0015002;heme-copper terminal oxidase activity;0.0204564291876042!GO:0016675;oxidoreductase activity, acting on heme group of donors;0.0204564291876042!GO:0004129;cytochrome-c oxidase activity;0.0204564291876042!GO:0006497;protein amino acid lipidation;0.0209519204391518!GO:0000226;microtubule cytoskeleton organization and biogenesis;0.022306071381259!GO:0031902;late endosome membrane;0.0223817953868414!GO:0008538;proteasome activator activity;0.0232563897953708!GO:0031529;ruffle organization and biogenesis;0.0232563897953708!GO:0043161;proteasomal ubiquitin-dependent protein catabolic process;0.0234224911063715!GO:0007050;cell cycle arrest;0.0239983959022896!GO:0044433;cytoplasmic vesicle part;0.0243077787659482!GO:0003857;3-hydroxyacyl-CoA dehydrogenase activity;0.024503043103958!GO:0042158;lipoprotein biosynthetic process;0.024503043103958!GO:0006611;protein export from nucleus;0.024503043103958!GO:0009889;regulation of biosynthetic process;0.0246962438472228!GO:0007052;mitotic spindle organization and biogenesis;0.0247752144349616!GO:0016125;sterol metabolic process;0.0254207573548754!GO:0006405;RNA export from nucleus;0.025544518070021!GO:0009119;ribonucleoside metabolic process;0.025638960735476!GO:0031326;regulation of cellular biosynthetic process;0.0257956296544007!GO:0006144;purine base metabolic process;0.0257968154846497!GO:0006506;GPI anchor biosynthetic process;0.0262396626273793!GO:0006520;amino acid metabolic process;0.0262820511892237!GO:0000086;G2/M transition of mitotic cell cycle;0.0262820511892237!GO:0043284;biopolymer biosynthetic process;0.0263598330470082!GO:0032940;secretion by cell;0.026586413431421!GO:0033673;negative regulation of kinase activity;0.0267116525620523!GO:0006469;negative regulation of protein kinase activity;0.0267116525620523!GO:0031371;ubiquitin conjugating enzyme complex;0.0269086095041039!GO:0043281;regulation of caspase activity;0.0275539250721756!GO:0042770;DNA damage response, signal transduction;0.0276305606147451!GO:0051539;4 iron, 4 sulfur cluster binding;0.0281543422092164!GO:0009615;response to virus;0.0281543422092164!GO:0030433;ER-associated protein catabolic process;0.0281543422092164!GO:0006515;misfolded or incompletely synthesized protein catabolic process;0.0281543422092164!GO:0006672;ceramide metabolic process;0.0282959574882517!GO:0031901;early endosome membrane;0.0293665589583271!GO:0006984;ER-nuclear signaling pathway;0.0295466930988542!GO:0000775;chromosome, pericentric region;0.0296366689251722!GO:0030100;regulation of endocytosis;0.0297694217512312!GO:0045935;positive regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;0.0299770222968173!GO:0005637;nuclear inner membrane;0.0301617918506961!GO:0030041;actin filament polymerization;0.0301798738327269!GO:0035035;histone acetyltransferase binding;0.0306449132908528!GO:0046822;regulation of nucleocytoplasmic transport;0.030646495202843!GO:0016407;acetyltransferase activity;0.0308992382618888!GO:0004527;exonuclease activity;0.0312404391051839!GO:0004518;nuclease activity;0.0312404391051839!GO:0008299;isoprenoid biosynthetic process;0.0317075730700474!GO:0045334;clathrin-coated endocytic vesicle;0.0317075730700474!GO:0005669;transcription factor TFIID complex;0.0318330823128969!GO:0043549;regulation of kinase activity;0.0322045042761642!GO:0004532;exoribonuclease activity;0.0334078161465124!GO:0016896;exoribonuclease activity, producing 5'-phosphomonoesters;0.0334078161465124!GO:0016667;oxidoreductase activity, acting on sulfur group of donors;0.0335658266119907!GO:0000178;exosome (RNase complex);0.0346167277079913!GO:0031575;G1/S transition checkpoint;0.0347068044122664!GO:0005774;vacuolar membrane;0.0347068044122664!GO:0006505;GPI anchor metabolic process;0.0347824617449729!GO:0006376;mRNA splice site selection;0.035217461632058!GO:0000389;nuclear mRNA 3'-splice site recognition;0.035217461632058!GO:0046426;negative regulation of JAK-STAT cascade;0.035217461632058!GO:0006749;glutathione metabolic process;0.035551390025687!GO:0012506;vesicle membrane;0.0367761092754398!GO:0031124;mRNA 3'-end processing;0.0374763982422747!GO:0006778;porphyrin metabolic process;0.0374763982422747!GO:0033013;tetrapyrrole metabolic process;0.0374763982422747!GO:0045936;negative regulation of phosphate metabolic process;0.0374763982422747!GO:0008426;protein kinase C inhibitor activity;0.0375962660895767!GO:0003682;chromatin binding;0.0379850981884463!GO:0051348;negative regulation of transferase activity;0.0381666434062177!GO:0043130;ubiquitin binding;0.0387865796056406!GO:0032182;small conjugating protein binding;0.0387865796056406!GO:0004674;protein serine/threonine kinase activity;0.0396353386207611!GO:0051272;positive regulation of cell motility;0.0399329479690939!GO:0040017;positive regulation of locomotion;0.0399329479690939!GO:0007017;microtubule-based process;0.0399329479690939!GO:0031625;ubiquitin protein ligase binding;0.039949774649529!GO:0051336;regulation of hydrolase activity;0.0399704115120981!GO:0007041;lysosomal transport;0.0405422254440635!GO:0031970;organelle envelope lumen;0.040707199571746!GO:0045941;positive regulation of transcription;0.0411279218663385!GO:0051493;regulation of cytoskeleton organization and biogenesis;0.0415059312691148!GO:0033043;regulation of organelle organization and biogenesis;0.0415059312691148!GO:0030508;thiol-disulfide exchange intermediate activity;0.0418192935119131!GO:0044262;cellular carbohydrate metabolic process;0.0429231410415869!GO:0005784;translocon complex;0.0436686968791964!GO:0043492;ATPase activity, coupled to movement of substances;0.0438818734299364!GO:0030330;DNA damage response, signal transduction by p53 class mediator;0.0440736981645253!GO:0007242;intracellular signaling cascade;0.0441704389363745!GO:0008097;5S rRNA binding;0.0441704389363745!GO:0003988;acetyl-CoA C-acyltransferase activity;0.0452942156413547!GO:0016584;nucleosome positioning;0.0455592203045936!GO:0046870;cadmium ion binding;0.0464024824853161!GO:0006643;membrane lipid metabolic process;0.0473192749291968!GO:0004659;prenyltransferase activity;0.0482205861548687!GO:0030911;TPR domain binding;0.0487284198699947!GO:0009303;rRNA transcription;0.0487693072753594!GO:0032508;DNA duplex unwinding;0.0489551035070914!GO:0032392;DNA geometric change;0.0489551035070914!GO:0004003;ATP-dependent DNA helicase activity;0.0496880213690559!GO:0008017;microtubule binding;0.0496880213690559!GO:0003985;acetyl-CoA C-acetyltransferase activity;0.0497538601461924!GO:0030130;clathrin coat of trans-Golgi network vesicle;0.0498700619095131!GO:0012510;trans-Golgi network transport vesicle membrane;0.0498700619095131!GO:0006007;glucose catabolic process;0.049901199775355!GO:0008064;regulation of actin polymerization and/or depolymerization;0.0499665318357852
|sample_id=11930
|sample_note=
|sample_sex=male
|sample_species=Human (Homo sapiens)
|sample_strain=
|sample_tissue=ANATOMICAL SYSTEM
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|xref=
|zenbu_report=https://fantom.gsc.riken.jp/zenbu/reports/#miRNA_expression_atlas_human;search_select_hide=table111:FF:11930-125I4;search_select_hide=table117:FF:11930-125I4
}}
}}

Latest revision as of 18:29, 4 June 2020

Name:Mallassez-derived cells, donor3
Species:Human (Homo sapiens)
Library ID:CNhs13551
Sample type:primary cells
Genomic View: UCSC
RefEX:Specific genes
FANTOM CAT:1, 2, 3, 4, 5, 6, 7, 8, 9, 10
CAGEd-oPOSSUM:link
ZENBU report :link
Additional information
Sample information
strainNA
tissueANATOMICAL SYSTEM
dev stageNA
sexmale
age18
cell typeepithelial cell rests of Malassez
cell lineNA
companyNA
collaborationMitsuhiro Ohshima (Nihon University School of Dentistry)
External link for information[{{{sample_info_link}}} {{{sample_info_link}}}]
RNA information
lot numberMZH7
catalog numberNA
sample typetotal RNA
extraction protocol (Details)OP-RNA-extraction-totalRNA-miRNeasy_Mini-v1.0

CAGE Accession numbers
MethodSample accession id
CAGE  SAMD00005171
Library accession numbers

Library idMethodExp. accession idRun accession id
CNhs13551 CAGE DRX008326 DRR009198
Accession ID Hg19

Library idBAMCTSS
CNhs13551 DRZ000623 DRZ002008
Accession ID Hg38

Library idBAMCTSS
CNhs13551 DRZ011973 DRZ013358
Download raw sequence, BAM & CTSS
Hg19
FastaBAMCTSS
downloaddownloaddonwload
Hg38
BAMCTSS
downloaddonwload


Relative expression to median (log10)

Transcription factors with enriched expression in this sampleRanked list of transcription factor promoter expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.



Co-expression clusters with enriched expression in this sampleRanked list of co-expression cluster expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed. <br>Analyst:NA <br><br>link to dataset.<br>data

Coexpression clusterscore
C0-CD14-Eosinophils-Neutrophils-Basophils-CD34-immature-Peripheral0
C1-testis-epididymis-embryonic-medulla-pituitary-trachea-caudate0
C10-occipital-temporal-parietal-brain-duodenum-Neurons-Neural0
C100-rhabdomyosarcoma-gastric-pineal-Wilms-cervical-mesodermal-endometrial0
C101-small-cerebellum-maxillary-colon-parietal-epididymis-merkel0
C102-neuroblastoma-testicular-pituitary-carcinosarcoma-rectum-acantholytic-iPS0
C103-CD4-CD8-Natural-Peripheral-Whole-Neutrophils-Basophils0
C104-Mast-Basophils-immature-CD14-CD34-eye-Natural0
C105-heart-skeletal-occipital-hippocampus-acute-Sebocyte-penis-0.0351
C106-Hep2-epitheloid-placenta-cervical-rectal-anaplastic-glassy0
C107-Neutrophils-CD14-Eosinophils-Monocytederived-Whole-Peripheral-blood0
C108-breast-hepatoblastoma-MCF7-parotid-salivary-submaxillary-prostate0
C109-Reticulocytes-non-acute-Hodgkin-Burkitt-retinoblastoma-lymphoma0.108
C11-cerebellum-medulla-pons-parietal-occipital-middle-medial0
C110-leukemia-chronic-Eosinophils-acute-Whole-CD34-Lymphatic0
C111-medulla-lung-trachea-testis-caudate-epididymis-throat0
C112-gastric-pancreas-temporal-duodenum-small-extraskeletal-adrenal0
C113-thyroid-throat-lung-lymph-small-colon-trachea0
C114-teratocarcinoma-medulloblastoma-carcinosarcoma-iPS-anaplastic-acute-neuroblastoma0
C115-pituitary-Neural-caudate-putamen-amygdala-medulla-hippocampus0
C116-myeloma-xeroderma-tonsil-CD19-spleen-lymph-trachea0
C117-serous-clear-kidney-neuroectodermal-mesothelioma-endometrial-Intestinal0
C118-cerebellum-parietal-occipital-medial-middle-frontal-insula0
C119-CD4-CD8-Natural-Neutrophils-CD14-Peripheral-CD190
C12-Mast-Basophils-immature-chorionic-mature-CD14-Eosinophils0
C120-immature-salivary-tongue-skin-cervical-CD14-CD340
C121-NK-Natural-CD8-CD4-anaplastic-chronic-B0
C122-chronic-Reticulocytes-skeletal-leukemia-acute-colon-Tracheal0
C123-CD19-Natural-CD8-CD4-CD14-Peripheral-Basophils0
C124-small-temporal-duodenum-colon-gall-signet-Hepatocyte0
C125-mucinous-alveolar-mesothelioma-Smooth-lung-CD14-Nucleus0
C126-gastrointestinal-argyrophil-smallcell-merkel-bile-insula-brain0
C127-maxillary-small-hepatoblastoma-hepatocellular-alveolar-colon-argyrophil0
C128-testicular-choriocarcinoma-H9-teratocarcinoma-pancreatic-iPS-HES3GFP0
C129-liver-Hepatocyte-colon-duodenum-temporal-testicular-small0
C13-Neutrophils-Eosinophils-CD14-Monocytederived-Whole-Peripheral-CD40
C130-iPS-HES3GFP-H9-teratocarcinoma-testicular-colon-Alveolar0
C131-lung-trachea-Alveolar-thyroid-umbilical-throat-skin0
C132-acute-small-Dendritic-Macrophage-CD14-Neutrophils-Monocytederived0
C133-signet-gall-small-kidney-colon-ductal-adenocarcinoma0
C134-skeletal-diaphragm-tongue-throat-Skeletal-skin-penis0
C135-neuroblastoma-retinoblastoma-carcinoid-choriocarcinoma-testicular-acute-rectum0
C136-Wilms-extraskeletal-anaplastic-rhabdomyosarcoma-cholangiocellular-nonsmall-neuroectodermal0
C137-large-ductal-melanoma-cervical-Endothelial-Smooth-chronic0
C138-diffuse-Burkitt-lymphangiectasia-lymphoma-acute-CD19-pineal0
C139-astrocytoma-skin-salivary-gall-serous-Mallassezderived-renal0
C14-Whole-blood-Reticulocytes-liver-Neutrophils-Eosinophils-spleen0
C140-Renal-Endothelial-Hepatic-Lymphatic-heart-lung-spleen0
C141-Hodgkin-acute-thymus-chronic-vein-CD4-B0
C142-Preadipocyte-Fibroblast-hepatic-Ewing-Adipocyte-Olfactory-Hair0.302
C143-Monocytederived-CD14-Macrophage-Dendritic-Basophils-CD14CD16-Osteoblast0
C144-CD4-tonsil-NK-appendix-CD8-splenic-mycosis0
C145-neuroblastoma-peripheral-neuroectodermal-neuroepithelioma-carcinoid-adult-extraskeletal0
C146-lymphangiectasia-lymphoma-gall-lymph-tonsil-gastric-transitionalcell0
C147-Neutrophils-Eosinophils-CD4-CD14-CD8-Natural-Peripheral0
C148-kidney-small-epididymis-pancreas-serous-duodenum-temporal0
C149-occipital-medial-brain-amygdala-parietal-cerebral-cerebellum0
C15-anaplastic-small-skeletal-neuroblastoma-parietal-temporal-tongue0
C150-merkel-carcinoid-nonsmall-gastrointestinal-argyrophil-pineal-small0
C151-CD14-Natural-Basophils-CD8-Eosinophils-CD4-Mast0
C152-peripheral-neuroectodermal-neuroepithelioma-neuroblastoma-testicular-carcinoid-lung0
C153-rhabdomyosarcoma-liposarcoma-pancreatic-somatostatinoma-Reticulocytes-lymphoma-testicular0
C154-adenocarcinoma-Mesenchymal-Cardiac-small-sacrococcigeal-Smooth-Prostate0
C155-pituitary-placenta-nonsmall-cervical-smallcell-choriocarcinoma-epitheloid0
C156-plasma-splenic-hereditary-B-large-xeroderma-b0
C157-testicular-H9-testis-iPS-teratocarcinoma-colon-trachea0
C158-adrenal-gastric-temporal-parietal-duodenum-caudate-putamen0
C159-choriocarcinoma-pancreatic-placenta-chorionic-testicular-bronchioalveolar-seminal0
C16-medial-amygdala-occipital-parietal-olfactory-putamen-brain0
C160-medulla-Hepatocyte-retina-corpus-liver-pineal-cerebral0
C161-mesothelioma-Mesothelial-acute-mesenchymal-extraskeletal-renal-placenta0
C162-spinal-locus-medulla-substantia-thalamus-globus-diencephalon0
C163-Skeletal-skeletal-Pericytes-Hepatic-rhabdomyosarcoma-throat-mesenchymal0
C164-signet-corpus-optic-mucinous-substantia-salivary-choriocarcinoma0
C165-epithelioid-Adipocyte-mesothelioma-myxofibrosarcoma-lung-gastric-Mesothelial0
C166-Macrophage-Monocytederived-Dendritic-adipose-lymph-CD14-lung0
C167-Basophils-Mast-Eosinophils-Neutrophils-Peripheral-Whole-CD40
C168-Mast-CD14-immature-Basophils-Eosinophils-CD34-Peripheral0
C169-hereditary-adult-gall-lymphangiectasia-chronic-b-choriocarcinoma0
C17-Mast-CD14-Monocytederived-Lymphatic-Smooth-mesenchymal-Macrophage0
C170-epitheloid-cervical-Hep2-keratoacanthoma-adult-neuroblastoma-signet0
C171-merkel-neuroblastoma-pineal-retinoblastoma-carcinoid-small-eye0
C172-chorionic-skeletal-tongue-amniotic-liver-gastrointestinal-Pericytes0
C173-Adipocyte-mature-skin-left-Hepatocyte-Osteoblast-adipose0
C174-CD14-Neutrophils-Smooth-mesothelioma-embryonic-Monocytederived-Eosinophils0
C175-Eosinophils-Neutrophils-CD4-Basophils-CD19-CD8-Natural0
C176-Eosinophils-Neutrophils-Mast-CD14-CD4-Basophils-CD19-0.085
C177-melanoma-Melanocyte-mesenchymal-retina-Mallassezderived-Gingival-squamous0
C178-spleen-liver-Hepatocyte-b-lymph-vein-thymus0
C179-CD19-Peripheral-lymphoma-blood-lymph-spleen-tonsil0
C18-CD4-CD8-thymus-Whole-Peripheral-Natural-blood0
C180-skeletal-heart-Hepatocyte-acute-occipital-hippocampus-middle-0.108
C181-liposarcoma-somatostatinoma-neuroblastoma-mesothelioma-nonsmall-small-Alveolar0
C182-renal-mature-mesothelioma-lung-Mammary-Adipocyte-acute0
C183-acute-non-CD34-diffuse-CD133-myeloma-Burkitt0
C184-somatostatinoma-smallcell-nonsmall-small-gastrointestinal-pineal-thyroid0
C185-small-adrenal-gastric-Mesenchymal-acute-HES3GFP-testis0
C186-squamous-papillotubular-large-Tracheal-oral-Small-epidermoid0
C187-migratory-immature-Dendritic-CD19-CD14-Monocytederived-Macrophage0
C188-left-heart-tongue-skeletal-Skeletal-diaphragm-throat0
C189-b-splenic-tonsil-CD19-lymph-appendix-spleen0
C19-embryonic-testis-cord-chronic-CD14-NK-mesothelioma0
C190-colon-small-rectum-duodenum-appendix-temporal-oral0
C191-leiomyoblastoma-Mast-parietal-acute-bone-neuroepithelioma-embryonic0
C192-Neutrophils-CD14-Peripheral-Eosinophils-CD8-Natural-CD40
C193-Mesenchymal-Adipocyte-mature-Cardiac-heart-CD14CD16-CD140
C194-MCF7-breast-prostate-Intestinal-diffuse-Wilms-Alveolar0
C195-Small-Gingival-Bronchial-Smooth-mesenchymal-Urothelial-Tracheal0.108
C196-testicular-iPS-H9-teratocarcinoma-HES3GFP-choriocarcinoma-endometrial0
C197-tongue-esophagus-tonsil-salivary-cervix-nasal-Gingival0
C198-Mesenchymal-Hair-Hepatic-Fibroblast-Smooth-tenocyte-Pericytes0
C199-glioblastoma-B-osteosarcoma-Fibroblast-heart-rhabdomyosarcoma-myxofibrosarcoma0
C2-Eosinophils-Neutrophils-CD14-Whole-Basophils-Peripheral-Mast0
C20-heart-left-skeletal-diaphragm-tongue-umbilical-throat0
C200-seminal-Cardiac-Smooth-Hair-submaxillary-Neutrophils-mixed-0.162
C201-colon-small-adenocarcinoma-duodenum-temporal-signet-gall0
C202-salivary-skin-penis-tongue-uterus-cervical-immature0
C203-acute-NK-chronic-CD133-lymphoma-immature-Dendritic0
C204-Smooth-nasal-CD4-CD19-CD8-CD14-CD340
C205-mycosis-cord-hairy-xeroderma-CD4-B-b0
C206-melanoma-somatostatinoma-nonsmall-small-neuroblastoma-smallcell-pituitary0
C207-Corneal-Keratinocyte-Esophageal-Mammary-Bronchial-Urothelial-Sebocyte0.584
C208-skin-amniotic-papillotubular-salivary-umbilical-Alveolar-serous0
C209-acute-myelodysplastic-CD34-granulocyte-CD133-liver-spleen0
C21-cord-mycosis-hairy-xeroderma-adult-CD4-anaplastic0
C210-Burkitt-lymphoma-appendix-acute-diffuse-CD19-tonsil0
C211-small-Hepatocyte-liver-colon-temporal-duodenum-kidney0
C212-chronic-acute-Whole-Reticulocytes-leukemia-blood-CD340
C213-CD14-Natural-CD8-CD4-Basophils-Eosinophils-Peripheral0
C214-Neurons-Neural-duodenum-temporal-occipital-parietal-brain0
C215-chronic-acute-peripheral-Hepatocyte-osteosarcoma-NK-immature0
C216-osteosarcoma-Smooth-Mesenchymal-large-neuroectodermal-acute-CD340
C217-carcinoid-neuroectodermal-mature-mesodermal-colon-acute-occipital0
C218-tonsil-lymph-CD19-spleen-colon-appendix-salivary0
C219-nasal-Basophils-amniotic-Melanocyte-CD14-Osteoblast-duodenum0
C22-CD4-CD8-Natural-Basophils-CD14-Peripheral-CD190
C220-Adipocyte-mature-left-breast-skin-liver-adipose0
C221-alveolar-Osteoblast-Myoblast-mesenchymal-liposarcoma-Smooth-hepatocellular0
C222-Melanocyte-Tracheal-Neutrophils-seminal-Smooth-Hair-Chondrocyte-0.228
C223-Chondrocyte-basal-renal-Fibroblast-Smooth-spindle-Synoviocyte0
C224-clear-serous-pleomorphic-choriocarcinoma-mesothelioma-amniotic-renal0
C225-ductal-alveolar-giant-prostate-salivary-squamous-Tracheal0
C226-Corneal-Keratinocyte-Esophageal-Urothelial-Mammary-Bronchial-Tracheal0.892
C227-chorionic-amniotic-Mesenchymal-Placental-gastric-diaphragm-tongue0
C228-colon-Intestinal-Prostate-hepatoblastoma-hepatocellular-testis-adult0
C229-Mesenchymal-CD4-Melanocyte-acute-skeletal-left-heart0
C23-CD4-CD8-Natural-Peripheral-Basophils-CD19-CD140
C230-aorta-normal-heart-penis-osteosarcoma-basal-lung0
C231-Mesothelial-mesenchymal-mesothelioma-Fibroblast-Preadipocyte-leiomyoma-mycosis0
C232-teratocarcinoma-HES3GFP-H9-iPS-testicular-neuroblastoma-cerebellum0
C233-uterus-cervix-ovary-epididymis-colon-rectum-MCF70
C234-oral-epidermoid-malignant-cervical-ductal-lung-keratoacanthoma0
C235-Intestinal-Prostate-liver-colon-small-kidney-pancreas0
C236-CD14-Neutrophils-Monocytederived-renal-Eosinophils-testis-mesothelioma0
C237-acute-breast-testicular-hepatoblastoma-chronic-argyrophil-Bronchial0
C238-stomach-gall-breast-duodenum-temporal-MCF7-smallcell0
C239-CD4-lymphangiectasia-CD8-NK-mycosis-Renal-hairy0
C24-pineal-eye-retina-retinoblastoma-medulloblastoma-small-cerebral0
C240-Adipocyte-Preadipocyte-Osteoblast-Chondrocyte-tenocyte-Synoviocyte-mesenchymal0
C241-Reticulocytes-chronic-Tracheal-Hodgkin-Endothelial-Hair-thymus-0.227
C242-acute-Chondrocyte-myelodysplastic-granulocyte-biphenotypic-Fibroblast-stomach0
C243-Chondrocyte-trachea-Synoviocyte-mesodermal-renal-Fibroblast-Ewing0
C244-CD14-Monocytederived-Hepatocyte-heart-Neutrophils-acute-Macrophage0
C245-prostate-penis-salivary-esophagus-kidney-Neutrophils-Pancreatic0
C246-Neutrophils-Eosinophils-Whole-CD14-CD14CD16-Basophils-migratory0
C247-pons-locus-medulla-spinal-paracentral-medial-occipital0
C248-iPS-Aortic-Hep2-amygdala-acute-medial-Myoblast0.892
C249-nonsmall-small-smallcell-occipital-somatostatinoma-maxillary-medial0
C25-small-colon-temporal-duodenum-liver-Hepatocyte-gall0
C250-Mast-Neutrophils-CD14-Eosinophils-CD8-Peripheral-CD40
C251-gall-tonsil-trachea-CD14-salivary-throat-tongue0
C252-hepatic-Olfactory-sacrococcigeal-leiomyoma-normal-Synoviocyte-glioblastoma0
C253-spleen-rhabdomyosarcoma-Hepatocyte-small-uterus-liver-rectum0
C254-prostate-rhabdomyosarcoma-seminal-Fibroblast-transitionalcell-Smooth-Iris0
C255-Wilms-leiomyoblastoma-kidney-adrenal-MCF7-epithelioid-Mast0
C256-occipital-caudate-amygdala-medial-thalamus-hippocampus-medulla0
C257-pineal-insula-frontal-occipital-temporal-medial-paracentral0
C258-hepatoblastoma-hepatocellular-signet-colon-Intestinal-Prostate-gastric0
C259-Preadipocyte-Adipocyte-Fibroblast-Chondrocyte-tenocyte-normal-Ewing0
C26-Eosinophils-Neutrophils-CD14-CD14CD16-Basophils-Monocytederived-Whole0
C260-acute-chronic-Natural-NK-Basophils-biphenotypic-blood0
C261-locus-medial-parietal-pons-diencephalon-olfactory-spinal0
C262-breast-MCF7-skeletal-Reticulocytes-mucinous-hepatoblastoma-Wilms0
C263-cervical-keratoacanthoma-tongue-skin-esophagus-throat-tonsil0
C264-giant-keratoacanthoma-colon-fibrosarcoma-HES3GFP-Hep2-acute0
C265-CD4-Eosinophils-CD14-Natural-CD19-Basophils-CD8-0.028
C266-acute-chronic-leukemia-small-choriocarcinoma-hepatoma-Mast0
C267-pancreatic-placenta-choriocarcinoma-testicular-teratocarcinoma-chorionic-clear0
C268-Mallassezderived-Urothelial-Gingival-Small-Bronchial-Tracheal-Prostate0.709
C269-Basophils-Mast-Eosinophils-mature-CD14-chorionic-CD40
C27-pancreas-temporal-duodenum-salivary-ductus-umbilical-lung0
C270-CD4-Fibroblast-acute-iPS-Aortic-CD34-Smooth0.59
C271-pineal-spinal-locus-globus-medulla-thalamus-cerebellum0
C272-CD19-CD4-CD8-Whole-Peripheral-lymph-tonsil0
C273-Neutrophils-CD14-Eosinophils-Monocytederived-CD4-Natural-Mast0
C274-CD14-Mast-immature-Basophils-mature-vagina-Hepatocyte0
C275-pons-medulla-cerebellum-locus-thalamus-diencephalon-spinal0
C276-mesothelioma-kidney-renal-small-clear-cerebellum-Renal0
C277-mesothelioma-epithelioid-thyroid-extraskeletal-alveolar-glioblastoma-adenocarcinoma0
C278-amygdala-hippocampus-insula-medial-putamen-temporal-olfactory0
C279-parietal-cerebellum-occipital-temporal-middle-duodenum-medial0
C28-thymus-acute-vein-Hodgkin-chronic-throat-Dendritic0
C280-Mast-Natural-CD19-CD8-Eosinophils-CD34-CD40
C281-Hodgkin-Reticulocytes-chronic-NK-acute-retinoblastoma-small-0.0143
C282-acute-B-tonsil-CD19-submaxillary-lymph-throat0
C283-tenocyte-Chondrocyte-mesenchymal-Macrophage-pleomorphic-Synoviocyte-cholangiocellular0
C284-parietal-occipital-medial-temporal-olfactory-locus-hippocampus0.0148
C285-cervical-Hep2-small-colon-temporal-duodenum-bronchogenic0
C286-cerebellum-occipital-optic-parietal-globus-caudate-medial0
C287-Hepatocyte-Chondrocyte-Adipocyte-Synoviocyte-liver-tenocyte-mesenchymal0
C288-Chondrocyte-Renal-Pericytes-Fibroblast-aorta-Smooth-Meningeal0
C289-chorionic-skeletal-heart-Mast-amniotic-granulosa-left0
C29-mature-adipose-Adipocyte-breast-Lymphatic-vein-heart0
C290-Eosinophils-CD14-Basophils-Mast-CD4-CD8-immature0
C291-spinal-substantia-retina-medulla-tongue-skeletal-trachea0
C292-Mesenchymal-skin-umbilical-Adipocyte-mesenchymal-Chondrocyte-skeletal0
C293-CD14-CD14CD16-Basophils-Peripheral-immature-Eosinophils-CD340
C294-CD14-Macrophage-Monocytederived-CD14CD16-Neutrophils-Basophils-Peripheral0
C295-Fibroblast-Smooth-Myoblast-Chondrocyte-hepatic-Synoviocyte-Preadipocyte0.12
C296-gall-small-mesothelioma-acute-bronchioalveolar-epidermoid-mixed0
C297-Eosinophils-CD4-Basophils-Natural-Neutrophils-CD8-Peripheral0
C298-small-optic-substantia-thalamus-diencephalon-globus-occipital0
C299-CD14CD16-Eosinophils-Neutrophils-CD14-Whole-Basophils-blood0
C3-occipital-temporal-insula-medial-postcentral-frontal-amygdala0
C30-thyroid-throat-mesothelioma-mucinous-trachea-chorionic-mesenchymal0
C300-CD4-CD8-NK-Natural-blood-mycosis-Basophils0
C301-Smooth-mesenchymal-Endothelial-Hepatic-basal-hepatic-chorionic0.195
C302-acute-peripheral-Neutrophils-NK-myelodysplastic-CD34-carcinoid0
C303-CD14-Basophils-Peripheral-Eosinophils-CD14CD16-Neutrophils-Whole0
C305-heart-skeletal-smooth-left-bladder-penis-esophagus0
C31-skeletal-tongue-diaphragm-throat-penis-skin-trachea0
C32-middle-occipital-parietal-hippocampus-amygdala-medial-olfactory0
C33-Reticulocytes-liver-Whole-blood-chronic-acute-spleen0
C34-placenta-chorionic-choriocarcinoma-mesothelioma-Wilms-Smooth-bile0
C35-caudate-putamen-diencephalon-nucleus-globus-thalamus-insula0
C36-B-b-splenic-plasma-xeroderma-adrenal-Burkitt0
C37-salivary-submaxillary-parotid-seminal-tongue-ductus-trachea0
C38-extraskeletal-rhabdomyosarcoma-adrenal-rectal-mesothelioma-lung-Wilms0
C39-epididymis-ductus-seminal-testis-acute-thyroid-CD1330
C4-optic-corpus-substantia-medulla-spinal-thalamus-globus0
C40-eye-retina-Lens-pineal-tongue-retinoblastoma-small0
C41-retina-eye-medulla-Retinal-medulloblastoma-kidney-pineal0
C42-small-lung-maxillary-pharyngeal-Mesenchymal-Wilms-colon0
C43-ductus-seminal-duodenum-temporal-gall-prostate-bladder0
C44-Dendritic-CD19-CD133-granulocyte-acute-thymus-immature0
C45-testicular-choriocarcinoma-H9-teratocarcinoma-Wilms-pancreatic-iPS0
C46-acute-Hodgkin-thymus-CD8-chronic-CD4-merkel0
C47-CD19-Burkitt-acute-xeroderma-tonsil-lymphoma-appendix0
C48-smooth-bladder-esophagus-colon-penis-aorta-uterus0
C49-H9-iPS-testicular-HES3GFP-teratocarcinoma-hepatoblastoma-choriocarcinoma0
C5-Hepatocyte-liver-hepatocellular-Intestinal-kidney-small-pancreas0
C50-chorionic-placenta-amniotic-migratory-smallcell-chronic-choriocarcinoma0
C51-kidney-mesothelioma-renal-signet-gall-lung-pancreas0
C52-adult-NK-chronic-cord-testis-embryonic-myeloma0
C53-medulloblastoma-pineal-retinoblastoma-small-retina-eye-pituitary0
C54-Dendritic-Macrophage-Monocytederived-CD14-leiomyoma-adipose-immature0
C55-hepatocellular-Intestinal-liver-Prostate-fibrosarcoma-Hepatocyte-hepatoblastoma0
C56-heart-left-umbilical-skeletal-penis-diaphragm-tongue0
C57-Neutrophils-Eosinophils-Whole-CD4-CD8-CD19-Natural0
C58-Melanocyte-melanoma-retina-Retinal-eye-migratory-H90
C59-Smooth-Fibroblast-Mesenchymal-tenocyte-Ewing-skin-hepatic0
C6-CD14-Eosinophils-Basophils-Peripheral-CD34-Natural-immature0
C60-esophagus-tonsil-throat-tongue-uterus-cervix-cervical0
C61-migratory-Dendritic-immature-Macrophage-xeroderma-cord-b0
C62-Burkitt-tonsil-CD19-submaxillary-spleen-salivary-lymph0
C63-neuroectodermal-neuroblastoma-carcinoid-peripheral-chronic-neuroepithelioma-acute0
C64-Mast-chronic-acute-immature-chorionic-Basophils-Dendritic0
C65-CD14-Eosinophils-Monocytederived-Basophils-immature-Macrophage-Neutrophils0
C66-cerebellum-middle-occipital-parietal-medial-amygdala-hippocampus0
C67-CD14-Monocytederived-Macrophage-dura-Dendritic-spleen-lung0
C68-amniotic-chorionic-Placental-salivary-placenta-tongue-mesothelioma0
C69-anaplastic-CD14-cord-hairy-mycosis-adult-NK0
C7-CD14-Eosinophils-Neutrophils-Smooth-Basophils-Macrophage-Mast0
C70-parotid-submaxillary-salivary-throat-trachea-aorta-tongue0
C71-Monocytederived-Macrophage-CD14-Dendritic-Osteoblast-leiomyoma-Prostate0
C72-skeletal-tongue-throat-heart-diaphragm-penis-left0
C73-pineal-eye-retina-caudate-cerebellum-left-parietal0
C74-splenic-B-b-plasma-xeroderma-lymphoma-hairy0
C75-Eosinophils-Natural-CD8-Basophils-CD14-CD4-Peripheral0
C76-argyrophil-gastrointestinal-temporal-duodenum-neuroblastoma-merkel-smallcell0
C77-Saos2-osteosarcoma-Neutrophils-Natural-Chondrocyte-Basophils-CD80
C78-lymphoma-plasma-tonsil-appendix-lymph-seminal-trachea0
C79-chorionic-Chondrocyte-Cardiac-Smooth-Fibroblast-Preadipocyte-Mesenchymal0.0576
C8-Natural-CD8-Basophils-CD4-CD14-Peripheral-CD340
C80-immature-migratory-CD14-Dendritic-splenic-cord-Mast0
C81-trachea-salivary-throat-aorta-eye-submaxillary-parotid0
C82-Basophils-CD14-Eosinophils-Natural-Peripheral-immature-CD340
C83-choriocarcinoma-pancreatic-placenta-chorionic-HES3GFP-testicular-amniotic0
C84-choriocarcinoma-pancreatic-Wilms-Mallassezderived-thymus-salivary-colon0
C85-neuroblastoma-carcinoid-retinoblastoma-small-pineal-rhabdomyosarcoma-medulloblastoma0
C86-colon-carcinoid-small-neuroectodermal-giant-large-neuroepithelioma0
C87-retinoblastoma-left-nonsmall-heart-small-diaphragm-bronchogenic0
C88-Melanocyte-melanoma-Macrophage-Mesenchymal-migratory-Dendritic-Monocytederived0
C89-small-retinoblastoma-medulloblastoma-iPS-acantholytic-eye-bronchogenic0
C9-skeletal-diaphragm-tongue-throat-penis-heart-left0
C90-neuroectodermal-peripheral-neuroepithelioma-neuroblastoma-carcinoid-parietal-putamen0
C91-Fibroblast-Smooth-mesenchymal-Mesothelial-Small-Preadipocyte-Hair0
C92-CD14CD16-CD14-Eosinophils-Basophils-Neutrophils-Macrophage-Whole0
C93-chronic-acute-leukemia-acantholytic-medulloblastoma-testis-papillotubular0
C94-smallcell-adrenal-lung-nonsmall-small-somatostatinoma-teratocarcinoma0
C95-lung-aorta-trachea-penis-Alveolar-throat-endometrioid0
C96-non-acute-tonsil-spleen-Burkitt-lymphoma-appendix0
C97-small-smallcell-gastrointestinal-argyrophil-putamen-duodenum-brain0
C98-CD8-Natural-Basophils-blood-CD4-Peripheral-Whole0
C99-hairy-mycosis-submaxillary-salivary-cord-kidney-parotid0



Repeat families with enriched expression in this sample<b>Summary:</b>Ranked list of repeat family expression in this sample relative tothe median expression in the FANTOM5 collection is shown. Value is log10transformed.<br><b>Analyst:</b>NA<br><br>link to dataset.<br>data



TFBS(DNA)motifs over-represented in proximal region of promoters active in this sample

JASPAR motifs<b>Summary:</b>Association of JASPAR motif to the promoter expression in thissample. Pearson's correlation between the number of TFBSs estimated byusing the position-weight matrix for each promoter and its expression isexpressed as Z-score by taking the ones based on random position-weightmatrix, and the tail probability of the normal distribution correspondingto the Z-score is taken as the resulting P-value. Lower P-value indicatesmore (non-random) association of the motif to promoter expression<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data

library id: CNhs13551

Jaspar motifP-value
MA0002.20.676
MA0003.10.717
MA0004.10.022
MA0006.10.0459
MA0007.10.476
MA0009.10.0304
MA0014.10.103
MA0017.10.482
MA0018.20.0157
MA0019.10.327
MA0024.10.0624
MA0025.10.937
MA0027.10.456
MA0028.12.18441e-4
MA0029.10.997
MA0030.10.194
MA0031.10.0769
MA0035.20.218
MA0038.10.525
MA0039.25.84388e-4
MA0040.10.336
MA0041.10.377
MA0042.10.932
MA0043.10.347
MA0046.10.537
MA0047.20.89
MA0048.10.596
MA0050.10.787
MA0051.10.387
MA0052.10.0464
MA0055.10.0269
MA0057.10.0736
MA0058.10.00463
MA0059.10.977
MA0060.10.153
MA0061.10.53
MA0062.28.72169e-4
MA0065.20.106
MA0066.10.141
MA0067.10.0104
MA0068.11.69328e-5
MA0069.10.559
MA0070.10.235
MA0071.10.0527
MA0072.10.152
MA0073.10.441
MA0074.10.362
MA0076.10.00704
MA0077.10.103
MA0078.10.81
MA0079.20.57
MA0080.20.0107
MA0081.10.553
MA0083.10.176
MA0084.10.0405
MA0087.10.917
MA0088.10.253
MA0090.13.66148e-5
MA0091.10.186
MA0092.10.553
MA0093.10.0154
MA0099.23.03293e-11
MA0100.10.302
MA0101.10.185
MA0102.20.487
MA0103.11.25701e-6
MA0104.20.247
MA0105.10.173
MA0106.16.80846e-13
MA0107.10.31
MA0108.20.695
MA0111.10.878
MA0112.20.135
MA0113.10.271
MA0114.10.26
MA0115.10.911
MA0116.10.161
MA0117.10.993
MA0119.10.362
MA0122.10.853
MA0124.10.958
MA0125.10.0266
MA0131.10.861
MA0135.10.996
MA0136.10.584
MA0137.20.614
MA0138.20.406
MA0139.10.343
MA0140.10.577
MA0141.10.132
MA0142.10.639
MA0143.10.458
MA0144.10.856
MA0145.10.0376
MA0146.10.541
MA0147.10.56
MA0148.10.563
MA0149.10.0243
MA0150.10.747
MA0152.10.501
MA0153.10.956
MA0154.10.215
MA0155.10.426
MA0156.10.214
MA0157.10.0641
MA0159.10.888
MA0160.10.386
MA0162.10.0646
MA0163.10.219
MA0164.10.956
MA0258.10.468
MA0259.10.45



FANTOM5 phase1 novel unique motifs<b>Summary:</b>Association of the 169 novel and unique motifs discovered in FANTOM5 phase1 in this sample. Among the de-novo motifs discovered by DMF, HOMER,ChIPMunk, and ScanAll, only novel motifs are selected after comparison with known motif sets, and their clustering based on MACRO-APE resulted in169 novel and unique motifs. Their association to the promoter expression is evaluated in the same way to the JASPAR motif above<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data

library id: CNhs13551

Novel motifP-value
10.794
100.766
1000.682
1010.139
1020.261
1030.0825
1040.839
1050.509
1060.923
1070.743
1080.899
1090.00205
110.365
1100.163
1110.232
1120.345
1130.121
1140.0841
1150.714
1160.648
1170.161
1180.543
1190.841
120.844
1200.0405
1210.231
1220.29
1230.114
1240.054
1250.497
1260.102
1270.0709
1280.678
1290.11
130.00351
1300.924
1310.808
1320.639
1330.00111
1340.373
1350.702
1360.00894
1370.09
1380.423
1390.19
140.928
1400.79
1410.346
1420.721
1430.798
1440.256
1450.643
1460.153
1470.548
1480.709
1490.965
150.915
1500.323
1510.64
1520.0211
1530.628
1540.764
1550.625
1560.601
1570.104
1580.0975
1590.605
160.0203
1600.723
1610.239
1620.698
1630.937
1640.871
1650.443
1660.635
1670.692
1680.12
1690.0929
170.391
180.485
190.884
20.229
200.895
210.956
220.914
230.915
240.00309
250.531
260.886
270.501
280.459
290.491
30.605
300.0753
310.864
320.0525
330.0551
340.79
350.0966
360.732
370.0617
380.67
390.318
40.649
400.0153
410.465
420.385
430.983
440.561
450.0873
460.959
470.129
480.0846
490.335
50.703
500.429
510.919
520.372
530.313
540.915
550.299
560.272
570.542
580.669
590.544
60.388
600.305
610.795
620.918
630.207
640.935
650.808
660.398
670.777
680.343
690.676
70.147
700.448
710.271
720.627
730.00447
740.0791
750.247
760.787
770.0491
780.00228
790.576
80.43
800.666
810.173
820.555
830.97
840.508
850.792
860.985
870.00149
880.715
890.0291
90.7
900.49
910.751
920.753
930.083
940.851
950.0245
960.876
970.655
980.904
990.388



de novo motifs identified by HOMER in promoters active in this sample<b>Summary:</b>The result of HOMER in this sample is shown.<br><b>Analyst:</b>NA <br> library id: CNhs13551


FANTOM5 (FF) ontology

Direct parent terms


Ancestor terms (non development)<b>Summary:</b>Connected ontology terms with is_a, part_of or located_in relationship <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source data<br>data

CL: Cell type
0000000 (cell), 0000000 (cell)
0000003 (native cell)
0000548 (animal cell)
0000066 (epithelial cell)
0002371 (somatic cell)
0002159 (general ecto-epithelial cell)
0000255 (eukaryotic cell)
0002077 (ecto-epithelial cell)
0002166 (epithelial cell of Malassez)

UBERON: Anatomy
0000468 (multi-cellular organism)
0010314 (structure with developmental contribution from neural crest)
0011216 (organ system subdivision)
0000062 (organ)
0000061 (anatomical structure)
0000465 (material anatomical entity)
0000477 (anatomical cluster)
0000467 (anatomical system)
0001062 (anatomical entity)
0000480 (anatomical group)
0000075 (subdivision of skeletal system)
0004765 (skeletal element)
0001708 (jaw skeleton)
0011159 (primary subdivision of cranial skeletal system)
0002204 (musculoskeletal system)
0001434 (skeletal system)
0008895 (splanchnocranium)
0011137 (axial skeletal system)
0010323 (cranial skeletal system)

FF: FANTOM5
0000102 (sample by type)
0000210 (human sample)
0000002 (in vivo cell sample)
0000101 (sample by species)
0000001 (sample)
0000087 (human Malassez derived epithelial cell sample)

Ancestor terms (development)<b>Summary:</b>Connected ontology terms with develops_from, derives_from or preceded_by relationship <br><b>Analyst:</b> Hideya Kawaji <br><br>link to source data<br>data
CL:0000221 (ectodermal cell)

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