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{{f5samples
{{f5samples
|DRA_sample_Accession=RNA-Seq@SAMD00013677
|DRA_sample_Accession=RNA-Seq@SAMD00013677
|accession_numbers=CAGE;DRX008530;DRR009402;DRZ000827;DRZ002212!RNA-Seq;DRX012354;DRR013802;DRZ003003;
|accession_numbers=CAGE;DRX008530;DRR009402;DRZ000827;DRZ002212;DRZ012177;DRZ013562!RNA-Seq;DRX012354;DRR013802;DRZ003003;
|ancestors_in_anatomy_facet=UBERON:0000468,UBERON:0007023,UBERON:0000178,UBERON:0000479,UBERON:0004120,UBERON:0000061,UBERON:0000465,UBERON:0000179,UBERON:0000463,UBERON:0000467,UBERON:0001062,UBERON:0000480,UBERON:0010317,UBERON:0002390,UBERON:0004535,UBERON:0002193,UBERON:0001009
|ancestors_in_anatomy_facet=UBERON:0000468,UBERON:0007023,UBERON:0000178,UBERON:0000479,UBERON:0004120,UBERON:0000061,UBERON:0000465,UBERON:0000179,UBERON:0000463,UBERON:0000467,UBERON:0001062,UBERON:0000480,UBERON:0010317,UBERON:0002390,UBERON:0004535,UBERON:0002193,UBERON:0001009
|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003
|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003
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|is_a=EFO:0002091;;FF:0000002;;FF:0000281
|is_a=EFO:0002091;;FF:0000002;;FF:0000281
|is_obsolete=
|is_obsolete=
|library_id=CNhs11671
|library_id=CNhs11671!RDhi10001
|library_id_phase_based=2:CNhs11671
|library_id_phase_based=2:CNhs11671
|microRNAs=
|microRNAs=
|microRNAs_nn=
|microRNAs_nn=
|microRNAs_nonnovel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2016/vis_viewer/#/human#cage;sample;12180
|microRNAs_nonnovel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer/#/human#cage;sample;12180
|microRNAs_novel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2016/vis_viewer_novel/#/human#cage;sample;12180
|microRNAs_novel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer_novel/#/human#cage;sample;12180
|name=Whole blood (ribopure), donor090309, donation2
|name=Whole blood (ribopure), donor090309, donation2
|namespace=FANTOM5
|namespace=FANTOM5
Line 62: Line 62:
|profile_rnaseq=
|profile_rnaseq=
|profile_srnaseq=,,,
|profile_srnaseq=,,,
|refex=http://refex.dbcls.jp/genelist.php?lang=en&db=human&roku_valid=1&rk[]=&order_key=score
|refex=http://refex.dbcls.jp/genelist.php?lang
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Line 100: Line 100:
|top_motifs=GATA6:4.17062460993;T:2.47333487981;SPI1:2.32301165007;ETS1,2:2.25926557459;SPIB:2.1955147047;STAT5{A,B}:2.12222505491;FOXO1,3,4:2.11527720506;FOX{F1,F2,J1}:1.95699512733;ELF1,2,4:1.95157116663;FOX{D1,D2}:1.83567977691;RUNX1..3:1.74177970934;DMAP1_NCOR{1,2}_SMARC:1.6814377776;SPZ1:1.58895342732;FOXD3:1.57554823736;TLX2:1.50335970704;TFAP4:1.49128089017;IRF7:1.4212968168;FOXP3:1.32192725258;NANOG{mouse}:1.29747058104;TGIF1:1.16808910995;CEBPA,B_DDIT3:1.16024016968;EP300:1.15982260035;HBP1_HMGB_SSRP1_UBTF:1.09542587923;HMX1:1.0711927277;PDX1:1.07109480829;IRF1,2:1.06068163818;FOX{I1,J2}:1.03599109065;ALX1:1.03064237242;STAT1,3:1.01017016814;NKX3-2:0.978787199247;PAX3,7:0.977532315916;CDX1,2,4:0.969058856389;ZNF148:0.929075494393;NFIL3:0.893167120916;SREBF1,2:0.825489370251;MYOD1:0.816904914443;FOXN1:0.78323022736;NFATC1..3:0.767575831927;POU5F1:0.736467121477;TOPORS:0.72820695226;SMAD1..7,9:0.700540284029;STAT2,4,6:0.660660929004;CRX:0.650740616567;PAX2:0.644778224934;RBPJ:0.634326808087;NFE2L2:0.608728908416;NFIX:0.588784560151;MYFfamily:0.554071121954;POU2F1..3:0.551044566191;ZNF423:0.528562224561;TFCP2:0.528350789487;RFX2..5_RFXANK_RFXAP:0.49622080044;AIRE:0.49197297685;ZEB1:0.467560343427;NKX2-2,8:0.430524845994;IKZF2:0.397831496426;NR6A1:0.39404130428;RREB1:0.372946230211;MZF1:0.372124578643;BPTF:0.368707969293;PPARG:0.359599160236;NR1H4:0.340845613492;OCT4_SOX2{dimer}:0.326757189576;RXRA_VDR{dimer}:0.305262440975;FOXA2:0.298707390689;EVI1:0.284423382135;DBP:0.230925112826;SNAI1..3:0.218217595182;BREu{core}:0.180808456719;HLF:0.139353305398;CUX2:0.10277036925;NFE2L1:0.0967143101735;FOXP1:0.095089389198;ZNF238:0.0913201855656;NR3C1:0.0826401145823;MYB:0.0772543854661;GATA4:0.0522155712247;NFKB1_REL_RELA:0.0255889071885;NFE2:-0.0124762213137;ATF5_CREB3:-0.0273836872534;MAZ:-0.0298854850979;NKX3-1:-0.0406364386115;PITX1..3:-0.050162086436;LMO2:-0.0694318707765;LEF1_TCF7_TCF7L1,2:-0.119189876576;SRF:-0.132923325504;XCPE1{core}:-0.175652843449;NHLH1,2:-0.210785538616;POU1F1:-0.214425096263;HOXA9_MEIS1:-0.217711903208;GLI1..3:-0.232786539349;ADNP_IRX_SIX_ZHX:-0.24720614545;PAX4:-0.262139602869;SP1:-0.271629147599;ELK1,4_GABP{A,B1}:-0.297644394564;TAL1_TCF{3,4,12}:-0.348598554353;REST:-0.355233428155;CREB1:-0.392344068139;ATF2:-0.399000820143;BACH2:-0.424205909552;VSX1,2:-0.444130755058;HMGA1,2:-0.450401173984;POU6F1:-0.45381271181;ZBTB16:-0.4952785766;FOSL2:-0.509731069165;PRDM1:-0.523696439064;RFX1:-0.53107670724;NKX2-1,4:-0.545455354279;MTE{core}:-0.563767138191;RORA:-0.575962533232;ALX4:-0.585964167506;FOS_FOS{B,L1}_JUN{B,D}:-0.594833295036;FOXQ1:-0.608963324947;PRRX1,2:-0.624276008194;ZFP161:-0.644686052027;KLF4:-0.650385120095;TLX1..3_NFIC{dimer}:-0.671948083716;HNF4A_NR2F1,2:-0.67373047843;NRF1:-0.685380663926;MAFB:-0.703522546833;HNF1A:-0.707275171663;MEF2{A,B,C,D}:-0.708540276412;ESR1:-0.73171181951;TFAP2{A,C}:-0.748713830942;LHX3,4:-0.754124979127;XBP1:-0.769229340375;NKX6-1,2:-0.775627509421;NR5A1,2:-0.791883793505;GTF2I:-0.792944402902;ZNF143:-0.808407805789;ATF4:-0.829959232233;TBX4,5:-0.864305437656;NFY{A,B,C}:-0.868028633164;PATZ1:-0.872631337629;AR:-0.902062107348;YY1:-1.03203370331;MTF1:-1.0592683068;PAX6:-1.0593728067;PBX1:-1.06642804227;SOX2:-1.06670949508;TBP:-1.06721387797;EN1,2:-1.07187324655;TFAP2B:-1.07466330723;JUN:-1.07795375375;EGR1..3:-1.08236115127;SOX{8,9,10}:-1.109718423;PAX5:-1.11357588665;HIC1:-1.1414387902;MED-1{core}:-1.2194279352;E2F1..5:-1.22239733441;NKX2-3_NKX2-5:-1.22584981848;SOX5:-1.23364672419;EBF1:-1.2398468829;NANOG:-1.25570335609;FOXL1:-1.27747528481;GZF1:-1.2859859839;ZNF384:-1.3447305367;RXR{A,B,G}:-1.36284915239;RXR{A,B,G}_{NR1H2,PPAR}dimers:-1.36893771319;TP53:-1.37419315751;GFI1:-1.38924918005;HES1:-1.39012907129;UFEwm:-1.40866089988;GCM1,2:-1.45076525301;HIF1A:-1.46037423002;HSF1,2:-1.47257507019;ZBTB6:-1.47478402392;POU3F1..4:-1.47524232272;HOX{A6,A7,B6,B7}:-1.49724611282;MYBL2:-1.50923070691;ESRRA:-1.51134929847;GFI1B:-1.51502849333;PAX8:-1.58003836166;TEAD1:-1.58528205481;ZIC1..3:-1.59205162142;AHR_ARNT_ARNT2:-1.64898674616;bHLH_family:-1.69309512164;FOXM1:-1.69525685165;HAND1,2:-1.72753645065;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:-1.78477281686;TEF:-1.79239421756;ATF6:-1.91460878737;HOX{A4,D4}:-1.93695234976;CDC5L:-1.93960025525;GTF2A1,2:-1.9562705436;HOX{A5,B5}:-2.11475923707;ARID5B:-2.12677836759;TFDP1:-2.35572218491;SOX17:-2.37686532277;ONECUT1,2:-2.39697259705;PAX1,9:-2.5025167081;IKZF1:-3.07067697355
|top_motifs=GATA6:4.17062460993;T:2.47333487981;SPI1:2.32301165007;ETS1,2:2.25926557459;SPIB:2.1955147047;STAT5{A,B}:2.12222505491;FOXO1,3,4:2.11527720506;FOX{F1,F2,J1}:1.95699512733;ELF1,2,4:1.95157116663;FOX{D1,D2}:1.83567977691;RUNX1..3:1.74177970934;DMAP1_NCOR{1,2}_SMARC:1.6814377776;SPZ1:1.58895342732;FOXD3:1.57554823736;TLX2:1.50335970704;TFAP4:1.49128089017;IRF7:1.4212968168;FOXP3:1.32192725258;NANOG{mouse}:1.29747058104;TGIF1:1.16808910995;CEBPA,B_DDIT3:1.16024016968;EP300:1.15982260035;HBP1_HMGB_SSRP1_UBTF:1.09542587923;HMX1:1.0711927277;PDX1:1.07109480829;IRF1,2:1.06068163818;FOX{I1,J2}:1.03599109065;ALX1:1.03064237242;STAT1,3:1.01017016814;NKX3-2:0.978787199247;PAX3,7:0.977532315916;CDX1,2,4:0.969058856389;ZNF148:0.929075494393;NFIL3:0.893167120916;SREBF1,2:0.825489370251;MYOD1:0.816904914443;FOXN1:0.78323022736;NFATC1..3:0.767575831927;POU5F1:0.736467121477;TOPORS:0.72820695226;SMAD1..7,9:0.700540284029;STAT2,4,6:0.660660929004;CRX:0.650740616567;PAX2:0.644778224934;RBPJ:0.634326808087;NFE2L2:0.608728908416;NFIX:0.588784560151;MYFfamily:0.554071121954;POU2F1..3:0.551044566191;ZNF423:0.528562224561;TFCP2:0.528350789487;RFX2..5_RFXANK_RFXAP:0.49622080044;AIRE:0.49197297685;ZEB1:0.467560343427;NKX2-2,8:0.430524845994;IKZF2:0.397831496426;NR6A1:0.39404130428;RREB1:0.372946230211;MZF1:0.372124578643;BPTF:0.368707969293;PPARG:0.359599160236;NR1H4:0.340845613492;OCT4_SOX2{dimer}:0.326757189576;RXRA_VDR{dimer}:0.305262440975;FOXA2:0.298707390689;EVI1:0.284423382135;DBP:0.230925112826;SNAI1..3:0.218217595182;BREu{core}:0.180808456719;HLF:0.139353305398;CUX2:0.10277036925;NFE2L1:0.0967143101735;FOXP1:0.095089389198;ZNF238:0.0913201855656;NR3C1:0.0826401145823;MYB:0.0772543854661;GATA4:0.0522155712247;NFKB1_REL_RELA:0.0255889071885;NFE2:-0.0124762213137;ATF5_CREB3:-0.0273836872534;MAZ:-0.0298854850979;NKX3-1:-0.0406364386115;PITX1..3:-0.050162086436;LMO2:-0.0694318707765;LEF1_TCF7_TCF7L1,2:-0.119189876576;SRF:-0.132923325504;XCPE1{core}:-0.175652843449;NHLH1,2:-0.210785538616;POU1F1:-0.214425096263;HOXA9_MEIS1:-0.217711903208;GLI1..3:-0.232786539349;ADNP_IRX_SIX_ZHX:-0.24720614545;PAX4:-0.262139602869;SP1:-0.271629147599;ELK1,4_GABP{A,B1}:-0.297644394564;TAL1_TCF{3,4,12}:-0.348598554353;REST:-0.355233428155;CREB1:-0.392344068139;ATF2:-0.399000820143;BACH2:-0.424205909552;VSX1,2:-0.444130755058;HMGA1,2:-0.450401173984;POU6F1:-0.45381271181;ZBTB16:-0.4952785766;FOSL2:-0.509731069165;PRDM1:-0.523696439064;RFX1:-0.53107670724;NKX2-1,4:-0.545455354279;MTE{core}:-0.563767138191;RORA:-0.575962533232;ALX4:-0.585964167506;FOS_FOS{B,L1}_JUN{B,D}:-0.594833295036;FOXQ1:-0.608963324947;PRRX1,2:-0.624276008194;ZFP161:-0.644686052027;KLF4:-0.650385120095;TLX1..3_NFIC{dimer}:-0.671948083716;HNF4A_NR2F1,2:-0.67373047843;NRF1:-0.685380663926;MAFB:-0.703522546833;HNF1A:-0.707275171663;MEF2{A,B,C,D}:-0.708540276412;ESR1:-0.73171181951;TFAP2{A,C}:-0.748713830942;LHX3,4:-0.754124979127;XBP1:-0.769229340375;NKX6-1,2:-0.775627509421;NR5A1,2:-0.791883793505;GTF2I:-0.792944402902;ZNF143:-0.808407805789;ATF4:-0.829959232233;TBX4,5:-0.864305437656;NFY{A,B,C}:-0.868028633164;PATZ1:-0.872631337629;AR:-0.902062107348;YY1:-1.03203370331;MTF1:-1.0592683068;PAX6:-1.0593728067;PBX1:-1.06642804227;SOX2:-1.06670949508;TBP:-1.06721387797;EN1,2:-1.07187324655;TFAP2B:-1.07466330723;JUN:-1.07795375375;EGR1..3:-1.08236115127;SOX{8,9,10}:-1.109718423;PAX5:-1.11357588665;HIC1:-1.1414387902;MED-1{core}:-1.2194279352;E2F1..5:-1.22239733441;NKX2-3_NKX2-5:-1.22584981848;SOX5:-1.23364672419;EBF1:-1.2398468829;NANOG:-1.25570335609;FOXL1:-1.27747528481;GZF1:-1.2859859839;ZNF384:-1.3447305367;RXR{A,B,G}:-1.36284915239;RXR{A,B,G}_{NR1H2,PPAR}dimers:-1.36893771319;TP53:-1.37419315751;GFI1:-1.38924918005;HES1:-1.39012907129;UFEwm:-1.40866089988;GCM1,2:-1.45076525301;HIF1A:-1.46037423002;HSF1,2:-1.47257507019;ZBTB6:-1.47478402392;POU3F1..4:-1.47524232272;HOX{A6,A7,B6,B7}:-1.49724611282;MYBL2:-1.50923070691;ESRRA:-1.51134929847;GFI1B:-1.51502849333;PAX8:-1.58003836166;TEAD1:-1.58528205481;ZIC1..3:-1.59205162142;AHR_ARNT_ARNT2:-1.64898674616;bHLH_family:-1.69309512164;FOXM1:-1.69525685165;HAND1,2:-1.72753645065;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:-1.78477281686;TEF:-1.79239421756;ATF6:-1.91460878737;HOX{A4,D4}:-1.93695234976;CDC5L:-1.93960025525;GTF2A1,2:-1.9562705436;HOX{A5,B5}:-2.11475923707;ARID5B:-2.12677836759;TFDP1:-2.35572218491;SOX17:-2.37686532277;ONECUT1,2:-2.39697259705;PAX1,9:-2.5025167081;IKZF1:-3.07067697355
|xref=
|xref=
|zenbu_report=https://fantom.gsc.riken.jp/zenbu/reports/#miRNA_expression_atlas_human;search_select_hide=table111:FF:12180-129A2;search_select_hide=table117:FF:12180-129A2
}}
}}

Latest revision as of 18:33, 4 June 2020

Name:Whole blood (ribopure), donor090309, donation2
Species:Human (Homo sapiens)
Library ID:CNhs11671,RDhi10001
Sample type:primary cells
Genomic View: UCSC
RefEX:Specific genes
FANTOM CAT:1, 2, 3, 4
CAGEd-oPOSSUM:link
ZENBU report :link
Additional information
Sample information
strainNA
tissueblood
dev stageNA
sexNA
ageNA
cell typeCELL MIXTURE - tissue sample
cell lineNA
companyNA
collaborationMatched_genome_OSC(contact:Al Forrest)
External link for information[{{{sample_info_link}}} {{{sample_info_link}}}]
RNA information
lot numberNA
catalog numberNA
sample typetotal RNA
extraction protocol (Details)NA

CAGE Accession numbers
MethodSample accession id
RNA-Seq  SAMD00013677
Library accession numbers

Library idMethodExp. accession idRun accession id
CNhs11671 CAGE DRX008530 DRR009402
RDhi10001 RNA-Seq DRX012354 DRR013802
Accession ID Hg19

Library idBAMCTSS
CNhs11671 DRZ000827 DRZ002212
RDhi10001 DRZ003003
Accession ID Hg38

Library idBAMCTSS
CNhs11671 DRZ012177 DRZ013562
RDhi10001
Download raw sequence, BAM & CTSS
Hg19
FastaBAMCTSS
downloaddownloaddonwload
Hg38
BAMCTSS
downloaddonwload


Relative expression to median (log10)

Transcription factors with enriched expression in this sampleRanked list of transcription factor promoter expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.



Co-expression clusters with enriched expression in this sampleRanked list of co-expression cluster expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed. <br>Analyst:NA <br><br>link to dataset.<br>data

Coexpression clusterscore
C0-CD14-Eosinophils-Neutrophils-Basophils-CD34-immature-Peripheral0
C1-testis-epididymis-embryonic-medulla-pituitary-trachea-caudate0
C10-occipital-temporal-parietal-brain-duodenum-Neurons-Neural0
C100-rhabdomyosarcoma-gastric-pineal-Wilms-cervical-mesodermal-endometrial0
C101-small-cerebellum-maxillary-colon-parietal-epididymis-merkel0
C102-neuroblastoma-testicular-pituitary-carcinosarcoma-rectum-acantholytic-iPS0
C103-CD4-CD8-Natural-Peripheral-Whole-Neutrophils-Basophils0
C104-Mast-Basophils-immature-CD14-CD34-eye-Natural0
C105-heart-skeletal-occipital-hippocampus-acute-Sebocyte-penis-0.0366
C106-Hep2-epitheloid-placenta-cervical-rectal-anaplastic-glassy0
C107-Neutrophils-CD14-Eosinophils-Monocytederived-Whole-Peripheral-blood0
C108-breast-hepatoblastoma-MCF7-parotid-salivary-submaxillary-prostate0
C109-Reticulocytes-non-acute-Hodgkin-Burkitt-retinoblastoma-lymphoma-0.34
C11-cerebellum-medulla-pons-parietal-occipital-middle-medial0
C110-leukemia-chronic-Eosinophils-acute-Whole-CD34-Lymphatic0
C111-medulla-lung-trachea-testis-caudate-epididymis-throat0
C112-gastric-pancreas-temporal-duodenum-small-extraskeletal-adrenal0
C113-thyroid-throat-lung-lymph-small-colon-trachea0
C114-teratocarcinoma-medulloblastoma-carcinosarcoma-iPS-anaplastic-acute-neuroblastoma0
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C97-small-smallcell-gastrointestinal-argyrophil-putamen-duodenum-brain0
C98-CD8-Natural-Basophils-blood-CD4-Peripheral-Whole0.518
C99-hairy-mycosis-submaxillary-salivary-cord-kidney-parotid0



Repeat families with enriched expression in this sample<b>Summary:</b>Ranked list of repeat family expression in this sample relative tothe median expression in the FANTOM5 collection is shown. Value is log10transformed.<br><b>Analyst:</b>NA<br><br>link to dataset.<br>data



TFBS(DNA)motifs over-represented in proximal region of promoters active in this sample

JASPAR motifs<b>Summary:</b>Association of JASPAR motif to the promoter expression in thissample. Pearson's correlation between the number of TFBSs estimated byusing the position-weight matrix for each promoter and its expression isexpressed as Z-score by taking the ones based on random position-weightmatrix, and the tail probability of the normal distribution correspondingto the Z-score is taken as the resulting P-value. Lower P-value indicatesmore (non-random) association of the motif to promoter expression<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data

library id: CNhs11671

Jaspar motifP-value
MA0002.21.30886e-10
MA0003.10.0639
MA0004.10.622
MA0006.10.567
MA0007.10.954
MA0009.10.0847
MA0014.10.99
MA0017.10.07
MA0018.20.0191
MA0019.10.76
MA0024.10.0146
MA0025.10.957
MA0027.10.405
MA0028.10.784
MA0029.10.69
MA0030.10.0678
MA0031.10.00208
MA0035.21.11065e-5
MA0038.10.0282
MA0039.20.157
MA0040.10.263
MA0041.10.269
MA0042.10.131
MA0043.10.871
MA0046.10.537
MA0047.20.347
MA0048.10.0968
MA0050.11.72184e-6
MA0051.10.0193
MA0052.10.0618
MA0055.10.0326
MA0057.10.833
MA0058.10.632
MA0059.10.458
MA0060.10.00106
MA0061.10.0381
MA0062.23.72281e-4
MA0065.20.152
MA0066.10.248
MA0067.10.567
MA0068.10.743
MA0069.10.454
MA0070.10.0373
MA0071.10.699
MA0072.10.666
MA0073.10.507
MA0074.10.747
MA0076.10.282
MA0077.10.204
MA0078.10.773
MA0079.20.97
MA0080.24.47025e-17
MA0081.10.00158
MA0083.10.764
MA0084.10.725
MA0087.10.933
MA0088.10.429
MA0090.10.0455
MA0091.10.191
MA0092.10.78
MA0093.10.508
MA0099.20.984
MA0100.10.95
MA0101.10.552
MA0102.27.34067e-4
MA0103.10.156
MA0104.20.535
MA0105.11.39137e-4
MA0106.10.69
MA0107.10.734
MA0108.22.47457e-5
MA0111.10.292
MA0112.29.25198e-4
MA0113.10.812
MA0114.10.442
MA0115.10.47
MA0116.17.62763e-6
MA0117.10.745
MA0119.10.38
MA0122.10.287
MA0124.10.485
MA0125.10.0843
MA0131.10.468
MA0135.10.955
MA0136.14.69134e-22
MA0137.20.134
MA0138.20.408
MA0139.10.159
MA0140.11.38606e-17
MA0141.10.755
MA0142.10.989
MA0143.10.709
MA0144.10.128
MA0145.10.0575
MA0146.10.0131
MA0147.10.556
MA0148.10.599
MA0149.10.405
MA0150.10.0158
MA0152.10.106
MA0153.10.122
MA0154.10.00212
MA0155.10.827
MA0156.17.67741e-15
MA0157.10.00668
MA0159.10.172
MA0160.10.571
MA0162.10.392
MA0163.11.6211e-5
MA0164.10.545
MA0258.10.00817
MA0259.10.251



FANTOM5 phase1 novel unique motifs<b>Summary:</b>Association of the 169 novel and unique motifs discovered in FANTOM5 phase1 in this sample. Among the de-novo motifs discovered by DMF, HOMER,ChIPMunk, and ScanAll, only novel motifs are selected after comparison with known motif sets, and their clustering based on MACRO-APE resulted in169 novel and unique motifs. Their association to the promoter expression is evaluated in the same way to the JASPAR motif above<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data

library id: CNhs11671

Novel motifP-value
10.149
100.0942
1000.496
1010.211
1020.579
1030.101
1040.885
1050.0661
1060.0554
1070.657
1080.881
1090.112
110.108
1100.359
1110.28
1120.123
1130.178
1140.0551
1150.181
1160.893
1170.0417
1180.464
1190.333
120.441
1200.698
1210.657
1220.257
1230.105
1240.0309
1250.209
1260.278
1270.22
1280.0459
1290.376
130.862
1300.539
1310.369
1320.602
1330.372
1340.75
1350.177
1361
1370.0127
1380.0784
1390.0342
140.188
1400.443
1410.486
1420.74
1430.0035
1440.802
1450.328
1460.617
1470.223
1480.191
1490.479
150.0525
1500.93
1510.27
1520.404
1530.438
1540.865
1550.196
1560.765
1570.233
1580.218
1590.265
160.451
1600.718
1610.404
1620.679
1630.379
1640.436
1650.0787
1660.952
1670.85
1680.0441
1690.012
170.312
180.509
190.284
20.207
200.498
210.346
220.211
230.0707
240.0321
250.254
260.296
270.0868
280.459
290.585
30.0772
300.947
310.481
320.721
330.586
340.265
350.223
360.47
370.175
380.305
390.994
40.936
400.439
410.0979
420.246
430.16
440.415
450.361
460.132
470.181
480.258
490.124
50.153
500.91
510.435
520.52
530.129
540.257
550.12
560.233
570.755
580.0628
590.0372
60.652
600.0701
610.226
620.0192
630.503
640.375
650.154
660.678
670.287
680.243
690.323
70.204
700.0792
710.102
720.25
730.369
740.736
750.092
760.563
770.53
780.251
790.939
80.356
800.0112
810.259
820.0435
830.999
840.48
850.162
860.138
870.62
880.538
890.255
90.208
900.03
910.357
920.0769
930.309
940.127
950.556
960.0628
970.806
980.0178
990.41



de novo motifs identified by HOMER in promoters active in this sample<b>Summary:</b>The result of HOMER in this sample is shown.<br><b>Analyst:</b>NA <br> library id: CNhs11671


FANTOM5 (FF) ontology

Direct parent terms


Ancestor terms (non development)<b>Summary:</b>Connected ontology terms with is_a, part_of or located_in relationship <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source data<br>data

CL: Cell type
0000000 (cell), 0000000 (cell)
0000003 (native cell)

UBERON: Anatomy
0000468 (multi-cellular organism)
0007023 (adult organism)
0000178 (blood)
0000479 (tissue)
0004120 (mesoderm-derived structure)
0000061 (anatomical structure)
0000465 (material anatomical entity)
0000179 (haemolymphatic fluid)
0000463 (organism substance)
0000467 (anatomical system)
0001062 (anatomical entity)
0000480 (anatomical group)
0010317 (germ layer / neural crest derived structure)
0002390 (hematopoietic system)
0004535 (cardiovascular system)
0002193 (hemolymphoid system)
0001009 (circulatory system)

FF: FANTOM5
0000102 (sample by type)
0000210 (human sample)
0000002 (in vivo cell sample)
0000101 (sample by species)
0000001 (sample)
0000998 (adult tissue sample)
0010053 (human blood - adult sample)
0000004 (tissue sample)
0000281 (human whole blood sample)

Ancestor terms (development)<b>Summary:</b>Connected ontology terms with develops_from, derives_from or preceded_by relationship <br><b>Analyst:</b> Hideya Kawaji <br><br>link to source data<br>data
NA

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