FF:12224-129F1: Difference between revisions

Latest revision as of 18:35, 4 June 2020

Name:	CD133+ stem cells - adult bone marrow derived, pool1
Species:	Human (Homo sapiens)
Library ID:	CNhs12552
Sample type:	primary cells
Genomic View:	UCSC
RefEX:	Specific genes
FANTOM CAT:	1, 2, 3, 4, 5, 6, 7, 8, 9
CAGEd-oPOSSUM:	link
ZENBU report :	link

Additional information

Sample information

strain	NA
tissue	bone marrow
dev stage	NA
sex	NA
age	NA
cell type	stem cell
cell line	NA
company	Stem cell technologies
collaboration	FANTOM5 OSC CORE (contact: Al Forrest)
External link for information	[{{{sample_info_link}}} {{{sample_info_link}}}]

RNA information

lot number	NA
catalog number	NA
sample type	NA
extraction protocol (Details)	OP-RNA-extraction-totalRNA-miRNeasy_Mini-v1.0

CAGE Accession numbers

Method		Sample accession id
CAGE		SAMD00005606

Library accession numbers

Library id		Method		Exp. accession id		Run accession id
CNhs12552		CAGE		DRX008047		DRR008919

Accession ID Hg19

Library id		BAM		CTSS
CNhs12552		DRZ000344		DRZ001729

Accession ID Hg38

Library id		BAM		CTSS
CNhs12552		DRZ011694		DRZ013079

Download raw sequence, BAM & CTSS

Hg19

Fasta	BAM	CTSS
download	download	donwload

Hg38

BAM	CTSS
download	donwload

Relative expression to median (log10)

Transcription factors with enriched expression in this sampleRanked list of transcription factor promoter expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.

Co-expression clusters with enriched expression in this sampleRanked list of co-expression cluster expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed. Analyst:NA link to dataset. data

Coexpression cluster	score
C0-CD14-Eosinophils-Neutrophils-Basophils-CD34-immature-Peripheral	0
C1-testis-epididymis-embryonic-medulla-pituitary-trachea-caudate	0
C10-occipital-temporal-parietal-brain-duodenum-Neurons-Neural	0
C100-rhabdomyosarcoma-gastric-pineal-Wilms-cervical-mesodermal-endometrial	0
C101-small-cerebellum-maxillary-colon-parietal-epididymis-merkel	0
C102-neuroblastoma-testicular-pituitary-carcinosarcoma-rectum-acantholytic-iPS	0
C103-CD4-CD8-Natural-Peripheral-Whole-Neutrophils-Basophils	0
C104-Mast-Basophils-immature-CD14-CD34-eye-Natural	0
C105-heart-skeletal-occipital-hippocampus-acute-Sebocyte-penis	-0.156
C106-Hep2-epitheloid-placenta-cervical-rectal-anaplastic-glassy	0
C107-Neutrophils-CD14-Eosinophils-Monocytederived-Whole-Peripheral-blood	0
C108-breast-hepatoblastoma-MCF7-parotid-salivary-submaxillary-prostate	0
C109-Reticulocytes-non-acute-Hodgkin-Burkitt-retinoblastoma-lymphoma	0.31
C11-cerebellum-medulla-pons-parietal-occipital-middle-medial	0
C110-leukemia-chronic-Eosinophils-acute-Whole-CD34-Lymphatic	0
C111-medulla-lung-trachea-testis-caudate-epididymis-throat	0
C112-gastric-pancreas-temporal-duodenum-small-extraskeletal-adrenal	0
C113-thyroid-throat-lung-lymph-small-colon-trachea	0
C114-teratocarcinoma-medulloblastoma-carcinosarcoma-iPS-anaplastic-acute-neuroblastoma	0
C115-pituitary-Neural-caudate-putamen-amygdala-medulla-hippocampus	0
C116-myeloma-xeroderma-tonsil-CD19-spleen-lymph-trachea	0
C117-serous-clear-kidney-neuroectodermal-mesothelioma-endometrial-Intestinal	0
C118-cerebellum-parietal-occipital-medial-middle-frontal-insula	0
C119-CD4-CD8-Natural-Neutrophils-CD14-Peripheral-CD19	0
C12-Mast-Basophils-immature-chorionic-mature-CD14-Eosinophils	0
C120-immature-salivary-tongue-skin-cervical-CD14-CD34	0
C121-NK-Natural-CD8-CD4-anaplastic-chronic-B	0
C122-chronic-Reticulocytes-skeletal-leukemia-acute-colon-Tracheal	0
C123-CD19-Natural-CD8-CD4-CD14-Peripheral-Basophils	0.201
C124-small-temporal-duodenum-colon-gall-signet-Hepatocyte	0
C125-mucinous-alveolar-mesothelioma-Smooth-lung-CD14-Nucleus	0
C126-gastrointestinal-argyrophil-smallcell-merkel-bile-insula-brain	0
C127-maxillary-small-hepatoblastoma-hepatocellular-alveolar-colon-argyrophil	0
C128-testicular-choriocarcinoma-H9-teratocarcinoma-pancreatic-iPS-HES3GFP	0
C129-liver-Hepatocyte-colon-duodenum-temporal-testicular-small	0
C13-Neutrophils-Eosinophils-CD14-Monocytederived-Whole-Peripheral-CD4	0
C130-iPS-HES3GFP-H9-teratocarcinoma-testicular-colon-Alveolar	0
C131-lung-trachea-Alveolar-thyroid-umbilical-throat-skin	0
C132-acute-small-Dendritic-Macrophage-CD14-Neutrophils-Monocytederived	0
C133-signet-gall-small-kidney-colon-ductal-adenocarcinoma	0
C134-skeletal-diaphragm-tongue-throat-Skeletal-skin-penis	0
C135-neuroblastoma-retinoblastoma-carcinoid-choriocarcinoma-testicular-acute-rectum	0
C136-Wilms-extraskeletal-anaplastic-rhabdomyosarcoma-cholangiocellular-nonsmall-neuroectodermal	0
C137-large-ductal-melanoma-cervical-Endothelial-Smooth-chronic	0
C138-diffuse-Burkitt-lymphangiectasia-lymphoma-acute-CD19-pineal	0
C139-astrocytoma-skin-salivary-gall-serous-Mallassezderived-renal	0
C14-Whole-blood-Reticulocytes-liver-Neutrophils-Eosinophils-spleen	0
C140-Renal-Endothelial-Hepatic-Lymphatic-heart-lung-spleen	0
C141-Hodgkin-acute-thymus-chronic-vein-CD4-B	0
C142-Preadipocyte-Fibroblast-hepatic-Ewing-Adipocyte-Olfactory-Hair	0
C143-Monocytederived-CD14-Macrophage-Dendritic-Basophils-CD14CD16-Osteoblast	0
C144-CD4-tonsil-NK-appendix-CD8-splenic-mycosis	0
C145-neuroblastoma-peripheral-neuroectodermal-neuroepithelioma-carcinoid-adult-extraskeletal	0
C146-lymphangiectasia-lymphoma-gall-lymph-tonsil-gastric-transitionalcell	0
C147-Neutrophils-Eosinophils-CD4-CD14-CD8-Natural-Peripheral	0
C148-kidney-small-epididymis-pancreas-serous-duodenum-temporal	0
C149-occipital-medial-brain-amygdala-parietal-cerebral-cerebellum	0
C15-anaplastic-small-skeletal-neuroblastoma-parietal-temporal-tongue	0
C150-merkel-carcinoid-nonsmall-gastrointestinal-argyrophil-pineal-small	0
C151-CD14-Natural-Basophils-CD8-Eosinophils-CD4-Mast	0.112
C152-peripheral-neuroectodermal-neuroepithelioma-neuroblastoma-testicular-carcinoid-lung	0
C153-rhabdomyosarcoma-liposarcoma-pancreatic-somatostatinoma-Reticulocytes-lymphoma-testicular	0
C154-adenocarcinoma-Mesenchymal-Cardiac-small-sacrococcigeal-Smooth-Prostate	0
C155-pituitary-placenta-nonsmall-cervical-smallcell-choriocarcinoma-epitheloid	0
C156-plasma-splenic-hereditary-B-large-xeroderma-b	0
C157-testicular-H9-testis-iPS-teratocarcinoma-colon-trachea	0
C158-adrenal-gastric-temporal-parietal-duodenum-caudate-putamen	0
C159-choriocarcinoma-pancreatic-placenta-chorionic-testicular-bronchioalveolar-seminal	0
C16-medial-amygdala-occipital-parietal-olfactory-putamen-brain	0
C160-medulla-Hepatocyte-retina-corpus-liver-pineal-cerebral	0
C161-mesothelioma-Mesothelial-acute-mesenchymal-extraskeletal-renal-placenta	0
C162-spinal-locus-medulla-substantia-thalamus-globus-diencephalon	0
C163-Skeletal-skeletal-Pericytes-Hepatic-rhabdomyosarcoma-throat-mesenchymal	0
C164-signet-corpus-optic-mucinous-substantia-salivary-choriocarcinoma	0
C165-epithelioid-Adipocyte-mesothelioma-myxofibrosarcoma-lung-gastric-Mesothelial	0
C166-Macrophage-Monocytederived-Dendritic-adipose-lymph-CD14-lung	0
C167-Basophils-Mast-Eosinophils-Neutrophils-Peripheral-Whole-CD4	0
C168-Mast-CD14-immature-Basophils-Eosinophils-CD34-Peripheral	0
C169-hereditary-adult-gall-lymphangiectasia-chronic-b-choriocarcinoma	0
C17-Mast-CD14-Monocytederived-Lymphatic-Smooth-mesenchymal-Macrophage	0
C170-epitheloid-cervical-Hep2-keratoacanthoma-adult-neuroblastoma-signet	0
C171-merkel-neuroblastoma-pineal-retinoblastoma-carcinoid-small-eye	0
C172-chorionic-skeletal-tongue-amniotic-liver-gastrointestinal-Pericytes	0
C173-Adipocyte-mature-skin-left-Hepatocyte-Osteoblast-adipose	0
C174-CD14-Neutrophils-Smooth-mesothelioma-embryonic-Monocytederived-Eosinophils	0
C175-Eosinophils-Neutrophils-CD4-Basophils-CD19-CD8-Natural	0.236
C176-Eosinophils-Neutrophils-Mast-CD14-CD4-Basophils-CD19	0.18
C177-melanoma-Melanocyte-mesenchymal-retina-Mallassezderived-Gingival-squamous	0
C178-spleen-liver-Hepatocyte-b-lymph-vein-thymus	0
C179-CD19-Peripheral-lymphoma-blood-lymph-spleen-tonsil	0
C18-CD4-CD8-thymus-Whole-Peripheral-Natural-blood	0
C180-skeletal-heart-Hepatocyte-acute-occipital-hippocampus-middle	-0.397
C181-liposarcoma-somatostatinoma-neuroblastoma-mesothelioma-nonsmall-small-Alveolar	0
C182-renal-mature-mesothelioma-lung-Mammary-Adipocyte-acute	0
C183-acute-non-CD34-diffuse-CD133-myeloma-Burkitt	0
C184-somatostatinoma-smallcell-nonsmall-small-gastrointestinal-pineal-thyroid	0
C185-small-adrenal-gastric-Mesenchymal-acute-HES3GFP-testis	0
C186-squamous-papillotubular-large-Tracheal-oral-Small-epidermoid	0
C187-migratory-immature-Dendritic-CD19-CD14-Monocytederived-Macrophage	0.201
C188-left-heart-tongue-skeletal-Skeletal-diaphragm-throat	0
C189-b-splenic-tonsil-CD19-lymph-appendix-spleen	0
C19-embryonic-testis-cord-chronic-CD14-NK-mesothelioma	0
C190-colon-small-rectum-duodenum-appendix-temporal-oral	0
C191-leiomyoblastoma-Mast-parietal-acute-bone-neuroepithelioma-embryonic	0
C192-Neutrophils-CD14-Peripheral-Eosinophils-CD8-Natural-CD4	0
C193-Mesenchymal-Adipocyte-mature-Cardiac-heart-CD14CD16-CD14	0
C194-MCF7-breast-prostate-Intestinal-diffuse-Wilms-Alveolar	0
C195-Small-Gingival-Bronchial-Smooth-mesenchymal-Urothelial-Tracheal	0
C196-testicular-iPS-H9-teratocarcinoma-HES3GFP-choriocarcinoma-endometrial	0
C197-tongue-esophagus-tonsil-salivary-cervix-nasal-Gingival	0
C198-Mesenchymal-Hair-Hepatic-Fibroblast-Smooth-tenocyte-Pericytes	0
C199-glioblastoma-B-osteosarcoma-Fibroblast-heart-rhabdomyosarcoma-myxofibrosarcoma	0
C2-Eosinophils-Neutrophils-CD14-Whole-Basophils-Peripheral-Mast	0
C20-heart-left-skeletal-diaphragm-tongue-umbilical-throat	0
C200-seminal-Cardiac-Smooth-Hair-submaxillary-Neutrophils-mixed	-0.258
C201-colon-small-adenocarcinoma-duodenum-temporal-signet-gall	0
C202-salivary-skin-penis-tongue-uterus-cervical-immature	0
C203-acute-NK-chronic-CD133-lymphoma-immature-Dendritic	0
C204-Smooth-nasal-CD4-CD19-CD8-CD14-CD34	0
C205-mycosis-cord-hairy-xeroderma-CD4-B-b	0
C206-melanoma-somatostatinoma-nonsmall-small-neuroblastoma-smallcell-pituitary	0
C207-Corneal-Keratinocyte-Esophageal-Mammary-Bronchial-Urothelial-Sebocyte	0
C208-skin-amniotic-papillotubular-salivary-umbilical-Alveolar-serous	0
C209-acute-myelodysplastic-CD34-granulocyte-CD133-liver-spleen	0.392
C21-cord-mycosis-hairy-xeroderma-adult-CD4-anaplastic	0
C210-Burkitt-lymphoma-appendix-acute-diffuse-CD19-tonsil	0
C211-small-Hepatocyte-liver-colon-temporal-duodenum-kidney	0
C212-chronic-acute-Whole-Reticulocytes-leukemia-blood-CD34	0
C213-CD14-Natural-CD8-CD4-Basophils-Eosinophils-Peripheral	0.112
C214-Neurons-Neural-duodenum-temporal-occipital-parietal-brain	0
C215-chronic-acute-peripheral-Hepatocyte-osteosarcoma-NK-immature	0
C216-osteosarcoma-Smooth-Mesenchymal-large-neuroectodermal-acute-CD34	0
C217-carcinoid-neuroectodermal-mature-mesodermal-colon-acute-occipital	0
C218-tonsil-lymph-CD19-spleen-colon-appendix-salivary	0
C219-nasal-Basophils-amniotic-Melanocyte-CD14-Osteoblast-duodenum	0
C22-CD4-CD8-Natural-Basophils-CD14-Peripheral-CD19	0.0751
C220-Adipocyte-mature-left-breast-skin-liver-adipose	0
C221-alveolar-Osteoblast-Myoblast-mesenchymal-liposarcoma-Smooth-hepatocellular	0
C222-Melanocyte-Tracheal-Neutrophils-seminal-Smooth-Hair-Chondrocyte	-0.405
C223-Chondrocyte-basal-renal-Fibroblast-Smooth-spindle-Synoviocyte	0
C224-clear-serous-pleomorphic-choriocarcinoma-mesothelioma-amniotic-renal	0
C225-ductal-alveolar-giant-prostate-salivary-squamous-Tracheal	0
C226-Corneal-Keratinocyte-Esophageal-Urothelial-Mammary-Bronchial-Tracheal	0
C227-chorionic-amniotic-Mesenchymal-Placental-gastric-diaphragm-tongue	0
C228-colon-Intestinal-Prostate-hepatoblastoma-hepatocellular-testis-adult	0
C229-Mesenchymal-CD4-Melanocyte-acute-skeletal-left-heart	0
C23-CD4-CD8-Natural-Peripheral-Basophils-CD19-CD14	0
C230-aorta-normal-heart-penis-osteosarcoma-basal-lung	0
C231-Mesothelial-mesenchymal-mesothelioma-Fibroblast-Preadipocyte-leiomyoma-mycosis	0
C232-teratocarcinoma-HES3GFP-H9-iPS-testicular-neuroblastoma-cerebellum	0
C233-uterus-cervix-ovary-epididymis-colon-rectum-MCF7	0
C234-oral-epidermoid-malignant-cervical-ductal-lung-keratoacanthoma	0
C235-Intestinal-Prostate-liver-colon-small-kidney-pancreas	0
C236-CD14-Neutrophils-Monocytederived-renal-Eosinophils-testis-mesothelioma	0
C237-acute-breast-testicular-hepatoblastoma-chronic-argyrophil-Bronchial	0
C238-stomach-gall-breast-duodenum-temporal-MCF7-smallcell	0
C239-CD4-lymphangiectasia-CD8-NK-mycosis-Renal-hairy	0
C24-pineal-eye-retina-retinoblastoma-medulloblastoma-small-cerebral	0
C240-Adipocyte-Preadipocyte-Osteoblast-Chondrocyte-tenocyte-Synoviocyte-mesenchymal	0
C241-Reticulocytes-chronic-Tracheal-Hodgkin-Endothelial-Hair-thymus	0.989
C242-acute-Chondrocyte-myelodysplastic-granulocyte-biphenotypic-Fibroblast-stomach	0
C243-Chondrocyte-trachea-Synoviocyte-mesodermal-renal-Fibroblast-Ewing	0
C244-CD14-Monocytederived-Hepatocyte-heart-Neutrophils-acute-Macrophage	0
C245-prostate-penis-salivary-esophagus-kidney-Neutrophils-Pancreatic	0
C246-Neutrophils-Eosinophils-Whole-CD14-CD14CD16-Basophils-migratory	0.357
C247-pons-locus-medulla-spinal-paracentral-medial-occipital	0
C248-iPS-Aortic-Hep2-amygdala-acute-medial-Myoblast	0.27
C249-nonsmall-small-smallcell-occipital-somatostatinoma-maxillary-medial	0
C25-small-colon-temporal-duodenum-liver-Hepatocyte-gall	0
C250-Mast-Neutrophils-CD14-Eosinophils-CD8-Peripheral-CD4	0
C251-gall-tonsil-trachea-CD14-salivary-throat-tongue	0
C252-hepatic-Olfactory-sacrococcigeal-leiomyoma-normal-Synoviocyte-glioblastoma	0
C253-spleen-rhabdomyosarcoma-Hepatocyte-small-uterus-liver-rectum	0
C254-prostate-rhabdomyosarcoma-seminal-Fibroblast-transitionalcell-Smooth-Iris	0
C255-Wilms-leiomyoblastoma-kidney-adrenal-MCF7-epithelioid-Mast	0
C256-occipital-caudate-amygdala-medial-thalamus-hippocampus-medulla	0
C257-pineal-insula-frontal-occipital-temporal-medial-paracentral	0
C258-hepatoblastoma-hepatocellular-signet-colon-Intestinal-Prostate-gastric	0
C259-Preadipocyte-Adipocyte-Fibroblast-Chondrocyte-tenocyte-normal-Ewing	0
C26-Eosinophils-Neutrophils-CD14-CD14CD16-Basophils-Monocytederived-Whole	0.112
C260-acute-chronic-Natural-NK-Basophils-biphenotypic-blood	0
C261-locus-medial-parietal-pons-diencephalon-olfactory-spinal	0
C262-breast-MCF7-skeletal-Reticulocytes-mucinous-hepatoblastoma-Wilms	0
C263-cervical-keratoacanthoma-tongue-skin-esophagus-throat-tonsil	0
C264-giant-keratoacanthoma-colon-fibrosarcoma-HES3GFP-Hep2-acute	0
C265-CD4-Eosinophils-CD14-Natural-CD19-Basophils-CD8	0.474
C266-acute-chronic-leukemia-small-choriocarcinoma-hepatoma-Mast	0
C267-pancreatic-placenta-choriocarcinoma-testicular-teratocarcinoma-chorionic-clear	0
C268-Mallassezderived-Urothelial-Gingival-Small-Bronchial-Tracheal-Prostate	0
C269-Basophils-Mast-Eosinophils-mature-CD14-chorionic-CD4	0
C27-pancreas-temporal-duodenum-salivary-ductus-umbilical-lung	0
C270-CD4-Fibroblast-acute-iPS-Aortic-CD34-Smooth	0.315
C271-pineal-spinal-locus-globus-medulla-thalamus-cerebellum	0
C272-CD19-CD4-CD8-Whole-Peripheral-lymph-tonsil	0
C273-Neutrophils-CD14-Eosinophils-Monocytederived-CD4-Natural-Mast	0
C274-CD14-Mast-immature-Basophils-mature-vagina-Hepatocyte	0
C275-pons-medulla-cerebellum-locus-thalamus-diencephalon-spinal	0
C276-mesothelioma-kidney-renal-small-clear-cerebellum-Renal	0
C277-mesothelioma-epithelioid-thyroid-extraskeletal-alveolar-glioblastoma-adenocarcinoma	0
C278-amygdala-hippocampus-insula-medial-putamen-temporal-olfactory	0
C279-parietal-cerebellum-occipital-temporal-middle-duodenum-medial	0
C28-thymus-acute-vein-Hodgkin-chronic-throat-Dendritic	0
C280-Mast-Natural-CD19-CD8-Eosinophils-CD34-CD4	0.451
C281-Hodgkin-Reticulocytes-chronic-NK-acute-retinoblastoma-small	0.28
C282-acute-B-tonsil-CD19-submaxillary-lymph-throat	0
C283-tenocyte-Chondrocyte-mesenchymal-Macrophage-pleomorphic-Synoviocyte-cholangiocellular	0
C284-parietal-occipital-medial-temporal-olfactory-locus-hippocampus	0
C285-cervical-Hep2-small-colon-temporal-duodenum-bronchogenic	0
C286-cerebellum-occipital-optic-parietal-globus-caudate-medial	0
C287-Hepatocyte-Chondrocyte-Adipocyte-Synoviocyte-liver-tenocyte-mesenchymal	0
C288-Chondrocyte-Renal-Pericytes-Fibroblast-aorta-Smooth-Meningeal	0
C289-chorionic-skeletal-heart-Mast-amniotic-granulosa-left	0
C29-mature-adipose-Adipocyte-breast-Lymphatic-vein-heart	0
C290-Eosinophils-CD14-Basophils-Mast-CD4-CD8-immature	0.299
C291-spinal-substantia-retina-medulla-tongue-skeletal-trachea	0
C292-Mesenchymal-skin-umbilical-Adipocyte-mesenchymal-Chondrocyte-skeletal	0
C293-CD14-CD14CD16-Basophils-Peripheral-immature-Eosinophils-CD34	0
C294-CD14-Macrophage-Monocytederived-CD14CD16-Neutrophils-Basophils-Peripheral	0.112
C295-Fibroblast-Smooth-Myoblast-Chondrocyte-hepatic-Synoviocyte-Preadipocyte	0
C296-gall-small-mesothelioma-acute-bronchioalveolar-epidermoid-mixed	0
C297-Eosinophils-CD4-Basophils-Natural-Neutrophils-CD8-Peripheral	0.274
C298-small-optic-substantia-thalamus-diencephalon-globus-occipital	0
C299-CD14CD16-Eosinophils-Neutrophils-CD14-Whole-Basophils-blood	0.201
C3-occipital-temporal-insula-medial-postcentral-frontal-amygdala	0
C30-thyroid-throat-mesothelioma-mucinous-trachea-chorionic-mesenchymal	0
C300-CD4-CD8-NK-Natural-blood-mycosis-Basophils	0
C301-Smooth-mesenchymal-Endothelial-Hepatic-basal-hepatic-chorionic	0
C302-acute-peripheral-Neutrophils-NK-myelodysplastic-CD34-carcinoid	0
C303-CD14-Basophils-Peripheral-Eosinophils-CD14CD16-Neutrophils-Whole	0
C305-heart-skeletal-smooth-left-bladder-penis-esophagus	0
C31-skeletal-tongue-diaphragm-throat-penis-skin-trachea	0
C32-middle-occipital-parietal-hippocampus-amygdala-medial-olfactory	0
C33-Reticulocytes-liver-Whole-blood-chronic-acute-spleen	0
C34-placenta-chorionic-choriocarcinoma-mesothelioma-Wilms-Smooth-bile	0
C35-caudate-putamen-diencephalon-nucleus-globus-thalamus-insula	0
C36-B-b-splenic-plasma-xeroderma-adrenal-Burkitt	0
C37-salivary-submaxillary-parotid-seminal-tongue-ductus-trachea	0
C38-extraskeletal-rhabdomyosarcoma-adrenal-rectal-mesothelioma-lung-Wilms	0
C39-epididymis-ductus-seminal-testis-acute-thyroid-CD133	0
C4-optic-corpus-substantia-medulla-spinal-thalamus-globus	0
C40-eye-retina-Lens-pineal-tongue-retinoblastoma-small	0
C41-retina-eye-medulla-Retinal-medulloblastoma-kidney-pineal	0
C42-small-lung-maxillary-pharyngeal-Mesenchymal-Wilms-colon	0
C43-ductus-seminal-duodenum-temporal-gall-prostate-bladder	0
C44-Dendritic-CD19-CD133-granulocyte-acute-thymus-immature	0
C45-testicular-choriocarcinoma-H9-teratocarcinoma-Wilms-pancreatic-iPS	0
C46-acute-Hodgkin-thymus-CD8-chronic-CD4-merkel	0
C47-CD19-Burkitt-acute-xeroderma-tonsil-lymphoma-appendix	0
C48-smooth-bladder-esophagus-colon-penis-aorta-uterus	0
C49-H9-iPS-testicular-HES3GFP-teratocarcinoma-hepatoblastoma-choriocarcinoma	0
C5-Hepatocyte-liver-hepatocellular-Intestinal-kidney-small-pancreas	0
C50-chorionic-placenta-amniotic-migratory-smallcell-chronic-choriocarcinoma	0
C51-kidney-mesothelioma-renal-signet-gall-lung-pancreas	0
C52-adult-NK-chronic-cord-testis-embryonic-myeloma	0
C53-medulloblastoma-pineal-retinoblastoma-small-retina-eye-pituitary	0
C54-Dendritic-Macrophage-Monocytederived-CD14-leiomyoma-adipose-immature	0
C55-hepatocellular-Intestinal-liver-Prostate-fibrosarcoma-Hepatocyte-hepatoblastoma	0
C56-heart-left-umbilical-skeletal-penis-diaphragm-tongue	0
C57-Neutrophils-Eosinophils-Whole-CD4-CD8-CD19-Natural	0.402
C58-Melanocyte-melanoma-retina-Retinal-eye-migratory-H9	0
C59-Smooth-Fibroblast-Mesenchymal-tenocyte-Ewing-skin-hepatic	0
C6-CD14-Eosinophils-Basophils-Peripheral-CD34-Natural-immature	0
C60-esophagus-tonsil-throat-tongue-uterus-cervix-cervical	0
C61-migratory-Dendritic-immature-Macrophage-xeroderma-cord-b	0
C62-Burkitt-tonsil-CD19-submaxillary-spleen-salivary-lymph	0
C63-neuroectodermal-neuroblastoma-carcinoid-peripheral-chronic-neuroepithelioma-acute	0
C64-Mast-chronic-acute-immature-chorionic-Basophils-Dendritic	0
C65-CD14-Eosinophils-Monocytederived-Basophils-immature-Macrophage-Neutrophils	0
C66-cerebellum-middle-occipital-parietal-medial-amygdala-hippocampus	0
C67-CD14-Monocytederived-Macrophage-dura-Dendritic-spleen-lung	0
C68-amniotic-chorionic-Placental-salivary-placenta-tongue-mesothelioma	0
C69-anaplastic-CD14-cord-hairy-mycosis-adult-NK	0
C7-CD14-Eosinophils-Neutrophils-Smooth-Basophils-Macrophage-Mast	0
C70-parotid-submaxillary-salivary-throat-trachea-aorta-tongue	0
C71-Monocytederived-Macrophage-CD14-Dendritic-Osteoblast-leiomyoma-Prostate	0
C72-skeletal-tongue-throat-heart-diaphragm-penis-left	0
C73-pineal-eye-retina-caudate-cerebellum-left-parietal	0
C74-splenic-B-b-plasma-xeroderma-lymphoma-hairy	0
C75-Eosinophils-Natural-CD8-Basophils-CD14-CD4-Peripheral	0.201
C76-argyrophil-gastrointestinal-temporal-duodenum-neuroblastoma-merkel-smallcell	0
C77-Saos2-osteosarcoma-Neutrophils-Natural-Chondrocyte-Basophils-CD8	0
C78-lymphoma-plasma-tonsil-appendix-lymph-seminal-trachea	0
C79-chorionic-Chondrocyte-Cardiac-Smooth-Fibroblast-Preadipocyte-Mesenchymal	0
C8-Natural-CD8-Basophils-CD4-CD14-Peripheral-CD34	0
C80-immature-migratory-CD14-Dendritic-splenic-cord-Mast	0
C81-trachea-salivary-throat-aorta-eye-submaxillary-parotid	0
C82-Basophils-CD14-Eosinophils-Natural-Peripheral-immature-CD34	0.112
C83-choriocarcinoma-pancreatic-placenta-chorionic-HES3GFP-testicular-amniotic	0
C84-choriocarcinoma-pancreatic-Wilms-Mallassezderived-thymus-salivary-colon	0
C85-neuroblastoma-carcinoid-retinoblastoma-small-pineal-rhabdomyosarcoma-medulloblastoma	0
C86-colon-carcinoid-small-neuroectodermal-giant-large-neuroepithelioma	0
C87-retinoblastoma-left-nonsmall-heart-small-diaphragm-bronchogenic	0
C88-Melanocyte-melanoma-Macrophage-Mesenchymal-migratory-Dendritic-Monocytederived	0
C89-small-retinoblastoma-medulloblastoma-iPS-acantholytic-eye-bronchogenic	0
C9-skeletal-diaphragm-tongue-throat-penis-heart-left	0
C90-neuroectodermal-peripheral-neuroepithelioma-neuroblastoma-carcinoid-parietal-putamen	0
C91-Fibroblast-Smooth-mesenchymal-Mesothelial-Small-Preadipocyte-Hair	0
C92-CD14CD16-CD14-Eosinophils-Basophils-Neutrophils-Macrophage-Whole	0
C93-chronic-acute-leukemia-acantholytic-medulloblastoma-testis-papillotubular	0
C94-smallcell-adrenal-lung-nonsmall-small-somatostatinoma-teratocarcinoma	0
C95-lung-aorta-trachea-penis-Alveolar-throat-endometrioid	0
C96-non-acute-tonsil-spleen-Burkitt-lymphoma-appendix	0
C97-small-smallcell-gastrointestinal-argyrophil-putamen-duodenum-brain	0
C98-CD8-Natural-Basophils-blood-CD4-Peripheral-Whole	0
C99-hairy-mycosis-submaxillary-salivary-cord-kidney-parotid	0

Repeat families with enriched expression in this sampleSummary:Ranked list of repeat family expression in this sample relative tothe median expression in the FANTOM5 collection is shown. Value is log10transformed. Analyst:NA link to dataset. data

TFBS(DNA)motifs over-represented in proximal region of promoters active in this sample

JASPAR motifsSummary:Association of JASPAR motif to the promoter expression in thissample. Pearson's correlation between the number of TFBSs estimated byusing the position-weight matrix for each promoter and its expression isexpressed as Z-score by taking the ones based on random position-weightmatrix, and the tail probability of the normal distribution correspondingto the Z-score is taken as the resulting P-value. Lower P-value indicatesmore (non-random) association of the motif to promoter expression Analyst: Michiel de Hoon link to dataset. data

library id: CNhs12552

Jaspar motif	Logo	P-value
MA0002.2	MA0002.2	0.0246
MA0003.1	MA0003.1	0.566
MA0004.1	MA0004.1	0.178
MA0006.1	MA0006.1	0.214
MA0007.1	MA0007.1	0.391
MA0009.1	MA0009.1	0.66
MA0014.1	MA0014.1	0.523
MA0017.1	MA0017.1	0.655
MA0018.2	MA0018.2	1.74579e-6
MA0019.1	MA0019.1	0.584
MA0024.1	MA0024.1	3.94436e-6
MA0025.1	MA0025.1	1.63364e-6
MA0027.1	MA0027.1	0.129
MA0028.1	MA0028.1	2.41121e-8
MA0029.1	MA0029.1	0.686
MA0030.1	MA0030.1	0.0852
MA0031.1	MA0031.1	0.26
MA0035.2	MA0035.2	0.07
MA0038.1	MA0038.1	0.949
MA0039.2	MA0039.2	0.676
MA0040.1	MA0040.1	0.122
MA0041.1	MA0041.1	0.978
MA0042.1	MA0042.1	0.233
MA0043.1	MA0043.1	3.00419e-14
MA0046.1	MA0046.1	0.49
MA0047.2	MA0047.2	0.865
MA0048.1	MA0048.1	0.24
MA0050.1	MA0050.1	8.9108e-9
MA0051.1	MA0051.1	4.05108e-6
MA0052.1	MA0052.1	0.146
MA0055.1	MA0055.1	0.067
MA0057.1	MA0057.1	0.711
MA0058.1	MA0058.1	0.0269
MA0059.1	MA0059.1	0.0553
MA0060.1	MA0060.1	2.9298e-5
MA0061.1	MA0061.1	0.0022
MA0062.2	MA0062.2	4.40944e-16
MA0065.2	MA0065.2	0.299
MA0066.1	MA0066.1	0.247
MA0067.1	MA0067.1	0.00101
MA0068.1	MA0068.1	1.27324e-4
MA0069.1	MA0069.1	0.0946
MA0070.1	MA0070.1	0.689
MA0071.1	MA0071.1	0.805
MA0072.1	MA0072.1	0.907
MA0073.1	MA0073.1	0.393
MA0074.1	MA0074.1	0.286
MA0076.1	MA0076.1	1.84262e-9
MA0077.1	MA0077.1	0.923
MA0078.1	MA0078.1	0.958
MA0079.2	MA0079.2	0.212
MA0080.2	MA0080.2	2.2943e-12
MA0081.1	MA0081.1	3.95565e-5
MA0083.1	MA0083.1	0.0481
MA0084.1	MA0084.1	0.921
MA0087.1	MA0087.1	0.402
MA0088.1	MA0088.1	0.0716
MA0090.1	MA0090.1	1.59393e-4
MA0091.1	MA0091.1	0.696
MA0092.1	MA0092.1	0.169
MA0093.1	MA0093.1	0.119
MA0099.2	MA0099.2	0.052
MA0100.1	MA0100.1	2.56085e-5
MA0101.1	MA0101.1	0.00135
MA0102.2	MA0102.2	1.84045e-5
MA0103.1	MA0103.1	0.197
MA0104.2	MA0104.2	1.46067e-4
MA0105.1	MA0105.1	0.0143
MA0106.1	MA0106.1	0.0584
MA0107.1	MA0107.1	0.00742
MA0108.2	MA0108.2	0.299
MA0111.1	MA0111.1	0.632
MA0112.2	MA0112.2	0.0847
MA0113.1	MA0113.1	0.3
MA0114.1	MA0114.1	0.681
MA0115.1	MA0115.1	0.968
MA0116.1	MA0116.1	0.0934
MA0117.1	MA0117.1	0.382
MA0119.1	MA0119.1	0.0897
MA0122.1	MA0122.1	0.256
MA0124.1	MA0124.1	0.853
MA0125.1	MA0125.1	0.937
MA0131.1	MA0131.1	0.00514
MA0135.1	MA0135.1	0.404
MA0136.1	MA0136.1	7.52428e-23
MA0137.2	MA0137.2	0.275
MA0138.2	MA0138.2	0.299
MA0139.1	MA0139.1	0.571
MA0140.1	MA0140.1	0.0932
MA0141.1	MA0141.1	0.6
MA0142.1	MA0142.1	0.787
MA0143.1	MA0143.1	0.73
MA0144.1	MA0144.1	0.689
MA0145.1	MA0145.1	0.014
MA0146.1	MA0146.1	0.108
MA0147.1	MA0147.1	7.36389e-4
MA0148.1	MA0148.1	0.447
MA0149.1	MA0149.1	0.662
MA0150.1	MA0150.1	0.934
MA0152.1	MA0152.1	0.176
MA0153.1	MA0153.1	0.0514
MA0154.1	MA0154.1	0.479
MA0155.1	MA0155.1	0.854
MA0156.1	MA0156.1	3.82345e-16
MA0157.1	MA0157.1	0.659
MA0159.1	MA0159.1	0.384
MA0160.1	MA0160.1	0.514
MA0162.1	MA0162.1	0.873
MA0163.1	MA0163.1	8.50027e-6
MA0164.1	MA0164.1	0.587
MA0258.1	MA0258.1	0.102
MA0259.1	MA0259.1	0.0828

FANTOM5 phase1 novel unique motifsSummary:Association of the 169 novel and unique motifs discovered in FANTOM5 phase1 in this sample. Among the de-novo motifs discovered by DMF, HOMER,ChIPMunk, and ScanAll, only novel motifs are selected after comparison with known motif sets, and their clustering based on MACRO-APE resulted in169 novel and unique motifs. Their association to the promoter expression is evaluated in the same way to the JASPAR motif above Analyst: Michiel de Hoon link to dataset. data

library id: CNhs12552

Novel motif	Logo	P-value
1	1	0.499
10	10	0.118
100	100	0.741
101	101	0.795
102	102	0.726
103	103	0.626
104	104	0.579
105	105	0.638
106	106	0.23
107	107	0.00174
108	108	0.124
109	109	0.482
11	11	0.895
110	110	0.932
111	111	0.322
112	112	0.434
113	113	0.8
114	114	0.312
115	115	0.252
116	116	0.594
117	117	0.021
118	118	0.161
119	119	0.0435
12	12	0.412
120	120	0.643
121	121	0.336
122	122	0.675
123	123	0.341
124	124	0.847
125	125	0.355
126	126	0.292
127	127	0.644
128	128	0.183
129	129	0.0539
13	13	0.0666
130	130	0.551
131	131	0.211
132	132	0.0512
133	133	0.0721
134	134	0.35
135	135	0.395
136	136	0.039
137	137	0.0378
138	138	0.401
139	139	0.188
14	14	0.818
140	140	0.0443
141	141	0.892
142	142	0.792
143	143	0.398
144	144	0.443
145	145	0.389
146	146	0.861
147	147	0.0269
148	148	0.489
149	149	0.063
15	15	0.8
150	150	0.761
151	151	0.481
152	152	0.51
153	153	0.248
154	154	0.479
155	155	0.0404
156	156	0.921
157	157	0.0904
158	158	0.988
159	159	0.113
16	16	0.218
160	160	0.59
161	161	0.969
162	162	0.097
163	163	0.391
164	164	0.291
165	165	0.347
166	166	0.658
167	167	0.615
168	168	0.507
169	169	0.113
17	17	0.176
18	18	0.0481
19	19	0.105
2	2	0.0872
20	20	0.18
21	21	0.231
22	22	0.54
23	23	0.00135
24	24	0.93
25	25	0.287
26	26	0.893
27	27	0.634
28	28	0.703
29	29	0.136
3	3	0.927
30	30	0.146
31	31	0.17
32	32	0.00577
33	33	0.296
34	34	0.723
35	35	0.753
36	36	0.101
37	37	0.476
38	38	0.374
39	39	0.302
4	4	0.815
40	40	0.289
41	41	0.835
42	42	0.563
43	43	0.23
44	44	0.423
45	45	0.205
46	46	0.359
47	47	0.732
48	48	0.843
49	49	0.371
5	5	0.426
50	50	0.842
51	51	0.628
52	52	0.246
53	53	0.916
54	54	0.208
55	55	0.294
56	56	0.463
57	57	0.472
58	58	0.826
59	59	0.394
6	6	0.996
60	60	0.464
61	61	0.344
62	62	0.783
63	63	0.246
64	64	0.911
65	65	0.042
66	66	0.755
67	67	0.595
68	68	0.884
69	69	0.22
7	7	0.396
70	70	0.00689
71	71	0.79
72	72	0.617
73	73	0.603
74	74	0.493
75	75	0.0771
76	76	0.172
77	77	0.0267
78	78	0.73
79	79	0.183
8	8	0.287
80	80	0.673
81	81	0.64
82	82	0.317
83	83	0.00263
84	84	0.205
85	85	0.00818
86	86	0.251
87	87	0.08
88	88	0.449
89	89	0.0161
9	9	0.613
90	90	0.736
91	91	0.474
92	92	0.0145
93	93	0.905
94	94	0.71
95	95	5.64854e-4
96	96	0.75
97	97	0.754
98	98	0.935
99	99	0.00188

de novo motifs identified by HOMER in promoters active in this sampleSummary:The result of HOMER in this sample is shown. Analyst:NA library id: CNhs12552

FANTOM5 (FF) ontology

Direct parent terms

is_a relathionship
EFO:0002091 biological replicate
FF:0000020 human CD133-positive progenitor cell- bone marrow derived sample

Ancestor terms (non development)Summary:Connected ontology terms with is_a, part_of or located_in relationship Analyst: Hideya Kawaji link to source data data

CL: Cell type
0000000 (cell), 0000000 (cell)
0000003 (native cell)
0000723 (somatic stem cell)
0000048 (multi fate stem cell)
0000988 (hematopoietic cell)
0000548 (animal cell)
0002320 (connective tissue cell)
0002371 (somatic cell)
0000255 (eukaryotic cell)
0000034 (stem cell)
0000037 (hematopoietic stem cell)
0002092 (bone marrow cell)
0001024 (CD34-positive, CD38-negative hematopoietic stem cell)

UBERON: Anatomy
0000468 (multi-cellular organism)
0002371 (bone marrow)
0001474 (bone element)
0002384 (connective tissue)
0000479 (tissue)
0000062 (organ)
0004120 (mesoderm-derived structure)
0000061 (anatomical structure)
0000465 (material anatomical entity)
0000467 (anatomical system)
0001062 (anatomical entity)
0000480 (anatomical group)
0004765 (skeletal element)
0010317 (germ layer / neural crest derived structure)
0002204 (musculoskeletal system)
0001434 (skeletal system)
0002390 (hematopoietic system)
0002193 (hemolymphoid system)
0002405 (immune system)

FF: FANTOM5
0000102 (sample by type)
0000210 (human sample)
0000002 (in vivo cell sample)
0000101 (sample by species)
0000027 (human CD133-positive hematopoeitic stem cell sample)
0000021 (hematopoietic stem cell sample)
0000001 (sample)
0000020 (human CD133-positive progenitor cell- bone marrow derived sample)

Ancestor terms (development)Summary:Connected ontology terms with develops_from, derives_from or preceded_by relationship Analyst: Hideya Kawaji link to source data data
CL:0000134 (mesenchymal cell)

@@ Line 1: / Line 1: @@
 {{f5samples
+|DRA_sample_Accession=CAGE@SAMD00005606
+|accession_numbers=CAGE;DRX008047;DRR008919;DRZ000344;DRZ001729;DRZ011694;DRZ013079
 |ancestors_in_anatomy_facet=UBERON:0000468,UBERON:0002371,UBERON:0001474,UBERON:0002384,UBERON:0000479,UBERON:0000062,UBERON:0004120,UBERON:0000061,UBERON:0000465,UBERON:0000467,UBERON:0001062,UBERON:0000480,UBERON:0004765,UBERON:0010317,UBERON:0002204,UBERON:0001434,UBERON:0002390,UBERON:0002193,UBERON:0002405
 |ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000723,CL:0000048,CL:0000988,CL:0000548,CL:0002320,CL:0002371,CL:0000255,CL:0000034,CL:0000037,CL:0002092,CL:0001024
@@ Line 7: / Line 9: @@
 |created_by=
 |creation_date=
-|datafreeze_phase=1
+|data_phase=2
+|datafreeze_phase=2
 |def=
 |expression_enrichment_score=chr16:85932760..85932775,+!p1@IRF8!2.19!155.31!IRF8;;chr2:68592406..68592424,+!p1@PLEK!2.09!123.31!PLEK;;chr21:39870339..39870443,-!p1@ERG!2.03!105.99!ERG;;chr6:135502501..135502546,+!p1@MYB!1.99!114.50!MYB;;chr11:47400078..47400106,-!p1@SPI1!1.90!77.80!SPI1;;chr6:135502408..135502459,+!p2@MYB!1.77!66.65!MYB;;chr12:54694758..54694805,-!p1@NFE2!1.76!67.53!NFE2;;chr7:50344289..50344323,+!p1@IKZF1!1.76!56.96!IKZF1;;chr7:115670804..115670825,-!p1@TFEC!1.76!56.37!TFEC;;chr19:13213662..13213686,-!p1@LYL1!1.63!60.19!LYL1;;chr19:45971246..45971265,+!p1@FOSB!1.61!697.59!FOSB;;chr9:20382446..20382493,-!p4@MLLT3!1.56!35.23!MLLT3;;chr12:54694807..54694832,-!p3@NFE2!1.54!33.47!NFE2;;chr2:16080659..16080685,+!p1@MYCN!1.49!29.65!MYCN;;chr6:144385698..144385742,-!p2@PLAGL1!1.47!34.06!PLAGL1;;chr6:126240442..126240459,+!p4@NCOA7!1.46!34.94!NCOA7;;chr19:33793430..33793447,-!p1@CEBPA!1.45!110.10!CEBPA;;chr4:57522598..57522664,-!p3@HOPX!1.42!25.25!HOPX;;chr2:100759010..100759035,-!p1@AFF3!1.41!24.66!AFF3;;chr2:60780607..60780624,-!p2@BCL11A!1.40!71.64!BCL11A;;chr7:50344251..50344288,+!p3@IKZF1!1.38!22.90!IKZF1;;chr3:128212033..128212051,-!p1@GATA2!1.35!21.43!GATA2;;chrY:21906594..21906622,-!p1@KDM5D!1.35!21.43!KDM5D;;chr6:126240463..126240489,+!p6@NCOA7!1.34!23.49!NCOA7;;chr19:13213511..13213545,-!p2@LYL1!1.34!22.61!LYL1;;chr2:100759037..100759058,-!p2@AFF3!1.32!19.96!AFF3;;chr4:57522674..57522699,-!p5@HOPX!1.32!19.96!HOPX;;chr6:126240380..126240430,+!p2@NCOA7!1.31!49.62!NCOA7;;chr21:36421535..36421610,-!p2@RUNX1!1.29!65.18!RUNX1;;chr2:145277640..145277771,-!p1@ZEB2!1.27!227.83!ZEB2;;chr2:68592394..68592405,+!p2@PLEK!1.26!17.32!PLEK;;chr7:27192185..27192209,-!p1@HOXA3!1.26!17.32!HOXA3;;chr13:41593425..41593480,-!p1@ELF1!1.24!101.59!ELF1;;chr1:25256756..25256774,-!p1@RUNX3!1.24!30.53!RUNX3;;chr11:47400062..47400077,-!p2@SPI1!1.24!16.44!SPI1;;chr17:53342311..53342400,+!p1@HLF!1.23!18.20!HLF;;chr6:135502472..135502489,+!p3@MYB!1.23!16.15!MYB;;chr7:27205136..27205164,-!p1@HOXA9!1.23!16.15!HOXA9;;chr12:11802547..11802560,+!p5@ETV6!1.22!21.73!ETV6;;chr4:57522166..57522260,-!p2@HOPX!1.19!16.74!HOPX;;chr7:137620650..137620677,-!p3@CREB3L2!1.17!13.80!CREB3L2;;chrX:106960285..106960299,-!p1@TSC22D3!1.16!353.79!TSC22D3;;chr10:94449703..94449718,+!p1@HHEX!1.16!52.26!HHEX;;chr7:50343634..50343717,+!p2@IKZF1!1.14!12.92!IKZF1;;chr14:75745523..75745537,+!p1@FOS!1.13!1475.05!FOS;;chr9:3525727..3525828,-!p2@RFX3!1.13!31.71!RFX3;;chr14:75988771..75988826,+!p1@BATF!1.13!16.74!BATF;;chr3:63953435..63953499,+!p1@ATXN7!1.13!12.62!ATXN7;;chrX:106960180..106960197,-!p2@TSC22D3!1.12!46.68!TSC22D3;;chr13:72441315..72441454,-!p1@DACH1!1.12!24.66!DACH1;;chr18:53257001..53257015,-!p5@TCF4!1.12!20.85!TCF4;;chr20:50159198..50159299,-!p1@NFATC2!1.12!17.91!NFATC2;;chr7:137620684..137620711,-!p4@CREB3L2!1.12!12.33!CREB3L2;;chrX:84499081..84499115,+!p2@ZNF711!1.11!17.62!ZNF711;;chr9:135854091..135854159,+!p1@GFI1B!1.11!11.74!GFI1B;;chr11:47399947..47399961,-!p3@SPI1!1.10!11.45!SPI1;;chr3:71631151..71631194,-!p15@FOXP1!1.09!12.62!FOXP1;;chr3:18486354..18486377,-!p2@SATB1!1.08!13.80!SATB1;;chr7:99680193..99680204,-!p2@ZNF3!1.08!11.16!ZNF3;;chr5:88179195..88179224,-!p3@MEF2C!1.07!17.03!MEF2C;;chr11:47399996..47400014,-!p4@SPI1!1.06!10.57!SPI1;;chr5:88178983..88179012,-!p1@MEF2C!1.05!80.45!MEF2C;;chr6:20402102..20402152,+!p1@E2F3!1.05!41.98!E2F3;;chr1:92951607..92951661,-!p1@GFI1!1.05!10.28!GFI1;;chr12:11802753..11802834,+!p2@ETV6!1.04!49.91!ETV6;;chr2:60781201..60781258,-!p3@BCL11A!1.04!9.98!BCL11A;;chr4:57522513..57522548,-!p4@HOPX!1.04!9.98!HOPX;;chr10:94449675..94449694,+!p2@HHEX!1.03!26.42!HHEX;;chr19:47616992..47617011,-!p4@ZC3H4!1.03!20.85!ZC3H4;;chr8:81397846..81397860,+!p3@ZBTB10!1.03!12.33!ZBTB10;;chr7:63505799..63505904,+!p1@ZNF727!1.03!9.69!ZNF727;;chr2:60780580..60780590,-!p9@BCL11A!1.03!9.69!BCL11A;;chrY:2803415..2803468,+!p1@ZFY!1.02!9.40!ZFY;;chr19:50922187..50922204,+!p1@SPIB!1.02!9.40!SPIB;;chr2:208031542..208031595,-!p2@KLF7!1.01!67.23!KLF7;;chr14:64971288..64971316,-!p2@ZBTB25!1.01!29.07!ZBTB25;;chr19:24097706..24097731,+!p2@ZNF726!1.01!17.91!ZNF726;;chrX:106960221..106960236,-!p3@TSC22D3!1.00!25.54!TSC22D3;;chr11:47400045..47400060,-!p6@SPI1!1.00!9.10!SPI1;;chr2:60780546..60780555,-!p10@BCL11A!1.00!9.10!BCL11A;;chr3:22414241..22414278,-!p5@ZNF385D!0.99!8.81!ZNF385D;;chrX:48644984..48645005,+!p1@GATA1!0.99!8.81!GATA1;;chr7:128577972..128578047,+!p1@IRF5!0.97!13.21!IRF5;;chr11:128563948..128564003,+!p1@FLI1!0.96!100.70!FLI1;;chr3:101546827..101546847,+!p2@NFKBIZ!0.96!11.45!NFKBIZ;;chr17:38497662..38497713,+!p4@RARA!0.96!9.40!RARA;;chr2:208394817..208394834,+!p3@CREB1!0.95!33.18!CREB1;;chr19:13213954..13214021,-!p4@LYL1!0.94!7.63!LYL1;;chr19:22235279..22235301,+!p1@ZNF257!0.93!14.68!ZNF257;;chr1:156470515..156470542,-!p2@MEF2D!0.92!39.64!MEF2D;;chr13:72440772..72440847,-!p5@DACH1!0.92!7.34!DACH1;;chr19:18392422..18392440,-!p1@JUND!0.91!1022.32!JUND;;chr19:57901326..57901385,+!p2@ZNF548!0.91!17.91!ZNF548;;chr12:54694653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+|fantom_cat=http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000034;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000037;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000222;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000837;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000988;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0002092;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0002193;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0002390;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0002405
 |ffid_belonging_in_development=CL:0000134
 |fonse_cell_line=
@@ Line 38: / Line 42: @@
 |fonse_treatment_closure=
 |has_quality=
+|hg19bam=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.LQhCAGE/CD133%252b%2520stem%2520cells%2520-%2520adult%2520bone%2520marrow%2520derived%252c%2520pool1.CNhs12552.12224-129F1.hg19.nobarcode.bam
+|hg19ctss=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.LQhCAGE/CD133%252b%2520stem%2520cells%2520-%2520adult%2520bone%2520marrow%2520derived%252c%2520pool1.CNhs12552.12224-129F1.hg19.ctss.bed.gz
+|hg19fasta=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.LQhCAGE/CD133%252b%2520stem%2520cells%2520-%2520adult%2520bone%2520marrow%2520derived%252c%2520pool1.CNhs12552.12224-129F1.hg19.nobarcode.rdna.fa.gz
+|hg38bam=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.primary_cell.LQhCAGE/CD133%252b%2520stem%2520cells%2520-%2520adult%2520bone%2520marrow%2520derived%252c%2520pool1.CNhs12552.12224-129F1.hg38.nobarcode.bam
+|hg38ctss=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.primary_cell.LQhCAGE/CD133%252b%2520stem%2520cells%2520-%2520adult%2520bone%2520marrow%2520derived%252c%2520pool1.CNhs12552.12224-129F1.hg38.nobarcode.ctss.bed.gz
 |id=FF:12224-129F1
 |is_a=EFO:0002091;;FF:0000020
 |is_obsolete=
+|library_id=CNhs12552
+|library_id_phase_based=2:CNhs12552
+|microRNAs=
+|microRNAs_nn=
+|microRNAs_nonnovel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer/#/human#cage;sample;12224
+|microRNAs_novel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer_novel/#/human#cage;sample;12224
 |name=CD133+ stem cells - adult bone marrow derived, pool1
 |namespace=FANTOM5
@@ Line 46: / Line 61: @@
 |profile_cagescan=,,,
 |profile_hcage=CNhs12552,LSID921,release012,COMPLETED
-|profile_rnaseq=,,,
+|profile_rnaseq=
 |profile_srnaseq=,,,
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@@ Line 63: / Line 79: @@
 |rna_weight_ug=1.40319
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+|sample_category=primary cells
 |sample_cell_catalog=ABM026F
 |sample_cell_line=
@@ Line 84: / Line 101: @@
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 |xref=
+|zenbu_report=https://fantom.gsc.riken.jp/zenbu/reports/#miRNA_expression_atlas_human;search_select_hide=table111:FF:12224-129F1;search_select_hide=table117:FF:12224-129F1
 }}

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Latest revision as of 18:35, 4 June 2020

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	Mozilla Cavendish skin modified by DaSch for the Web Community Wiki GitHub project page – Report a bug – Skin version: 2.6.0