FF:12240-129G8: Difference between revisions
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{{f5samples | {{f5samples | ||
|ancestors_in_anatomy_facet=UBERON: | |DRA_sample_Accession=CAGE@SAMD00004848 | ||
|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL: | |DRA_sample_Accession_RNASeq=sRNA-Seq@SAMD00004848 | ||
|accession_numbers=CAGE;DRX008542;DRR009414;DRZ000839;DRZ002224;DRZ012189;DRZ013574 | |||
|accession_numbers_RNASeq=sRNA-Seq;DRX037204;DRR041570;DRZ007212 | |||
|ancestors_in_anatomy_facet=UBERON:0000468,UBERON:0002384,UBERON:0000479,UBERON:0000064,UBERON:0000062,UBERON:0000061,UBERON:0000465,UBERON:0004923,UBERON:0005631,UBERON:0000467,UBERON:0001062,UBERON:0000480,UBERON:0000476,UBERON:0000478,UBERON:0000158,UBERON:0003124,UBERON:0000920 | |||
|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000723,CL:0000048,CL:0000548,CL:0002320,CL:0002371,CL:0000219,CL:0000134,CL:0000349,CL:0000255,CL:0000034,CL:0002541 | |||
|ancestors_in_disease_facet= | |ancestors_in_disease_facet= | ||
|ancestors_in_ff_facet=FF:0000102,FF:0000210,FF:0000002,FF:0000101,FF:0000001,FF:0000038 | |||
|comment= | |comment= | ||
|created_by= | |created_by= | ||
|creation_date= | |creation_date= | ||
|data_phase=2 | |||
|datafreeze_phase=2 | |||
|def= | |def= | ||
|expression_enrichment_score= | |||
|fonse_cell_line= | |fonse_cell_line= | ||
|fonse_cell_line_closure= | |fonse_cell_line_closure= | ||
| Line 35: | Line 44: | ||
|fonse_treatment_closure= | |fonse_treatment_closure= | ||
|has_quality= | |has_quality= | ||
|hg19bam=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/chorionic%2520membrane%2520cells%252c%2520donor3.CNhs12380.12240-129G8.hg19.nobarcode.bam | |||
|hg19ctss=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/chorionic%2520membrane%2520cells%252c%2520donor3.CNhs12380.12240-129G8.hg19.ctss.bed.gz | |||
|hg19fasta=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/chorionic%2520membrane%2520cells%252c%2520donor3.CNhs12380.12240-129G8.hg19.nobarcode.rdna.fa.gz | |||
|hg38bam=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.primary_cell.hCAGE/chorionic%2520membrane%2520cells%252c%2520donor3.CNhs12380.12240-129G8.hg38.nobarcode.bam | |||
|hg38ctss=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.primary_cell.hCAGE/chorionic%2520membrane%2520cells%252c%2520donor3.CNhs12380.12240-129G8.hg38.nobarcode.ctss.bed.gz | |||
|id=FF:12240-129G8 | |id=FF:12240-129G8 | ||
|is_a=EFO:0002091;;FF: | |is_a=EFO:0002091;;FF:0000038 | ||
|is_obsolete= | |||
|library_id=CNhs12380 | |||
|library_id_phase_based=2:CNhs12380 | |||
|microRNAs= | |||
|microRNAs_nn= | |||
|microRNAs_nonnovel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer/#/human#cage;sample;12240 | |||
|microRNAs_nonnovel_srna=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2016/vis_viewer/#/human#srna;sample;SRhi10013.TTAGGC.12240 | |||
|microRNAs_novel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer_novel/#/human#cage;sample;12240 | |||
|microRNAs_novel_srna=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2016/vis_viewer_novel/#/human#srna;sample;SRhi10013.TTAGGC.12240 | |||
|name=chorionic membrane cells, donor3 | |name=chorionic membrane cells, donor3 | ||
|namespace=FANTOM5 | |namespace=FANTOM5 | ||
| Line 42: | Line 65: | ||
|profile_cagescan=,,, | |profile_cagescan=,,, | ||
|profile_hcage=CNhs12380,LSID914,release011,COMPLETED | |profile_hcage=CNhs12380,LSID914,release011,COMPLETED | ||
|profile_rnaseq= | |profile_rnaseq= | ||
|profile_srnaseq=SRhi10013,,, | |profile_srnaseq=SRhi10013,,, | ||
|refex=http://refex.dbcls.jp/genelist.php?lang | |||
|repeat_enrich_byfamily=0,0,0.092776003344243,0,0.337487646980437,0,0,0.403776552812639,0,0.69152956375746,0.436437392474308,0,0,0,0.185552006688486,0,0,0,0,0,0.185552006688486,0,0,0,0.648104558465361,0,0.092776003344243,0,0.157572468746099,0,0.623380936669003,0,0,-0.132956589778862,0,0,0,0,0,0,0,0,0,0,0.185552006688486,0,0.767247756669534,0.315144937492197,0,0,0.315144937492197,0,0,0,0,0.133357447633264,0,0,0,0,0,0,0,0.317831351190158,0,0,-0.097343627213097,0,0,0,0,0,0,0,0.127821549634822,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.192309447136098,-0.211197402695869,0,0.185552006688486,0.092776003344243,0,-0.0980353512377064,0.394885026882785,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,-0.096373593922461,0.185552006688486,0,0,0.706725800632587,0.932094032603026,0,0,0.185552006688486,0,0,0 | |||
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| |||
|rna_box=129 | |rna_box=129 | ||
|rna_catalog_number= | |rna_catalog_number= | ||
| Line 56: | Line 82: | ||
|rna_tube_id=129G8 | |rna_tube_id=129G8 | ||
|rna_weight_ug=11.46042 | |rna_weight_ug=11.46042 | ||
|rnaseq_library_id=SRhi10013.TTAGGC | |||
|sample_age= | |sample_age= | ||
|sample_category=primary cells | |||
|sample_cell_catalog= | |sample_cell_catalog= | ||
|sample_cell_line= | |sample_cell_line= | ||
| Line 69: | Line 97: | ||
|sample_ethnicity= | |sample_ethnicity= | ||
|sample_experimental_condition= | |sample_experimental_condition= | ||
|sample_gostat=GO:0044464;cell part;0!GO:0005622;intracellular;0!GO:0044424;intracellular part;4.69161132083247e-228!GO:0005737;cytoplasm;3.03426439936073e-165!GO:0043231;intracellular membrane-bound organelle;5.38459886836597e-138!GO:0043227;membrane-bound organelle;5.38459886836597e-138!GO:0043226;organelle;6.25358438414332e-138!GO:0043229;intracellular organelle;1.51640120629287e-137!GO:0044444;cytoplasmic part;8.44636382518443e-112!GO:0044422;organelle part;4.59930864278637e-92!GO:0044446;intracellular organelle part;1.79814204956403e-90!GO:0005515;protein binding;2.27757581207356e-89!GO:0032991;macromolecular complex;9.5361078027498e-68!GO:0044238;primary metabolic process;1.72795352667131e-65!GO:0043170;macromolecule metabolic process;1.61576757638953e-64!GO:0044237;cellular metabolic process;9.49321954764015e-63!GO:0030529;ribonucleoprotein complex;1.60259269164882e-62!GO:0003723;RNA binding;1.63467031921876e-58!GO:0043233;organelle lumen;1.17587770614515e-50!GO:0031974;membrane-enclosed lumen;1.17587770614515e-50!GO:0019538;protein metabolic process;9.20078575100822e-50!GO:0005634;nucleus;1.02347135003363e-46!GO:0044428;nuclear part;1.40244945350811e-46!GO:0006412;translation;4.954104146307e-45!GO:0031090;organelle membrane;6.64468076339153e-45!GO:0033036;macromolecule localization;1.83387311701145e-44!GO:0015031;protein transport;3.49427097796244e-44!GO:0045184;establishment of protein localization;7.94269159374291e-43!GO:0044260;cellular macromolecule metabolic process;2.72938318617542e-42!GO:0008104;protein localization;5.72433895858614e-42!GO:0044267;cellular protein metabolic process;6.88726643381749e-42!GO:0005739;mitochondrion;1.19797930177834e-41!GO:0016043;cellular component organization and biogenesis;3.87752980458101e-40!GO:0005840;ribosome;2.32316113996367e-37!GO:0009059;macromolecule biosynthetic process;9.00840187963756e-36!GO:0006396;RNA processing;4.04653339663235e-34!GO:0043234;protein complex;4.01319172758682e-33!GO:0003735;structural constituent of ribosome;2.41064212201168e-32!GO:0031981;nuclear lumen;8.02699149091295e-32!GO:0010467;gene expression;1.75201768670911e-31!GO:0005829;cytosol;2.76365314259776e-31!GO:0043283;biopolymer metabolic process;4.05228754133678e-31!GO:0046907;intracellular transport;2.7512842070071e-30!GO:0009058;biosynthetic process;3.29180853659082e-30!GO:0016071;mRNA metabolic process;8.63731293231848e-30!GO:0006886;intracellular protein transport;1.27489840568825e-29!GO:0033279;ribosomal subunit;2.00413926468839e-29!GO:0065003;macromolecular complex assembly;2.64581526865299e-29!GO:0008380;RNA splicing;2.82441019412887e-29!GO:0031967;organelle envelope;3.46961133901344e-29!GO:0044249;cellular biosynthetic process;6.04196183380814e-29!GO:0031975;envelope;7.58079854957234e-29!GO:0044429;mitochondrial part;7.60577632047621e-29!GO:0022607;cellular component assembly;9.940824764294e-27!GO:0006397;mRNA processing;1.75165337954542e-26!GO:0005830;cytosolic ribosome (sensu Eukaryota);1.19964994902929e-23!GO:0022613;ribonucleoprotein complex biogenesis and assembly;1.16241683571573e-22!GO:0006139;nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;1.28984818312525e-22!GO:0005681;spliceosome;1.83661129922769e-21!GO:0051649;establishment of cellular localization;1.83661129922769e-21!GO:0051641;cellular localization;2.97694685808123e-21!GO:0005740;mitochondrial envelope;7.13019005307095e-21!GO:0005654;nucleoplasm;1.60334705177382e-20!GO:0044445;cytosolic part;1.81668163367687e-20!GO:0031966;mitochondrial membrane;4.88446810667502e-20!GO:0012505;endomembrane system;7.33141771132691e-20!GO:0005783;endoplasmic reticulum;1.01657160240743e-19!GO:0012501;programmed cell death;8.67901544158119e-19!GO:0006915;apoptosis;1.12769986156446e-18!GO:0008134;transcription factor binding;2.48463008778739e-18!GO:0019866;organelle inner membrane;5.82172894065908e-18!GO:0008219;cell death;1.41840125952699e-17!GO:0016265;death;1.41840125952699e-17!GO:0044451;nucleoplasm part;1.85713732397623e-17!GO:0006119;oxidative phosphorylation;1.98290771204252e-17!GO:0048770;pigment granule;3.2421589375856e-17!GO:0042470;melanosome;3.2421589375856e-17!GO:0005794;Golgi apparatus;3.44194505643584e-17!GO:0005743;mitochondrial inner membrane;5.08185047629716e-17!GO:0006996;organelle organization and biogenesis;6.73077538901797e-17!GO:0022618;protein-RNA complex assembly;3.19272744942115e-16!GO:0016192;vesicle-mediated transport;4.53220846621883e-16!GO:0015935;small ribosomal subunit;1.84093001040748e-15!GO:0051603;proteolysis involved in cellular protein catabolic process;1.97360975113514e-15!GO:0043228;non-membrane-bound organelle;2.1449185230402e-15!GO:0043232;intracellular non-membrane-bound organelle;2.1449185230402e-15!GO:0044432;endoplasmic reticulum part;2.49330377298943e-15!GO:0019941;modification-dependent protein catabolic process;4.12383047222071e-15!GO:0043632;modification-dependent macromolecule catabolic process;4.12383047222071e-15!GO:0044257;cellular protein catabolic process;5.09031283900601e-15!GO:0006457;protein folding;7.74075542677246e-15!GO:0015934;large ribosomal subunit;8.20214247924295e-15!GO:0044265;cellular macromolecule catabolic process;9.22719860002548e-15!GO:0006511;ubiquitin-dependent protein catabolic process;9.72793522733356e-15!GO:0006605;protein targeting;2.05773532134945e-14!GO:0044455;mitochondrial membrane part;2.87429407287396e-14!GO:0043285;biopolymer catabolic process;3.59046286044032e-14!GO:0016462;pyrophosphatase activity;5.56307092514238e-14!GO:0016817;hydrolase activity, acting on acid anhydrides;7.10400264443443e-14!GO:0016818;hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides;7.67644834844271e-14!GO:0048523;negative regulation of cellular process;1.60409181822569e-13!GO:0006512;ubiquitin cycle;3.89392568381994e-13!GO:0000502;proteasome complex (sensu Eukaryota);4.12603034366128e-13!GO:0016874;ligase activity;5.36880936811009e-13!GO:0016070;RNA metabolic process;5.46271539739296e-13!GO:0017111;nucleoside-triphosphatase activity;5.65035078909382e-13!GO:0003676;nucleic acid binding;7.75382401334867e-13!GO:0005843;cytosolic small ribosomal subunit (sensu Eukaryota);8.22667575121906e-13!GO:0030163;protein catabolic process;8.38746876872021e-13!GO:0048193;Golgi vesicle transport;1.42173305904398e-12!GO:0005730;nucleolus;1.85548390613979e-12!GO:0009057;macromolecule catabolic process;1.9891941987429e-12!GO:0006461;protein complex assembly;2.04315274460381e-12!GO:0005773;vacuole;3.86849464144671e-12!GO:0043412;biopolymer modification;6.8046619611516e-12!GO:0050794;regulation of cellular process;6.8046619611516e-12!GO:0051082;unfolded protein binding;1.3412879342891e-11!GO:0000398;nuclear mRNA splicing, via spliceosome;1.37570903676438e-11!GO:0000375;RNA splicing, via transesterification reactions;1.37570903676438e-11!GO:0000377;RNA splicing, via transesterification reactions with bulged adenosine as nucleophile;1.37570903676438e-11!GO:0048519;negative regulation of biological process;1.81640390799099e-11!GO:0005842;cytosolic large ribosomal subunit (sensu Eukaryota);2.03965787154977e-11!GO:0005746;mitochondrial respiratory chain;2.25573373227374e-11!GO:0042981;regulation of apoptosis;2.52615097392679e-11!GO:0000166;nucleotide binding;2.87995101724193e-11!GO:0042175;nuclear envelope-endoplasmic reticulum network;3.93151624535491e-11!GO:0016655;oxidoreductase activity, acting on NADH or NADPH, quinone or similar compound as acceptor;4.22993940066236e-11!GO:0043067;regulation of programmed cell death;4.61010305343642e-11!GO:0050136;NADH dehydrogenase (quinone) activity;4.94535480359102e-11!GO:0003954;NADH dehydrogenase activity;4.94535480359102e-11!GO:0008137;NADH dehydrogenase (ubiquinone) activity;4.94535480359102e-11!GO:0008135;translation factor activity, nucleic acid binding;4.97640397441756e-11!GO:0000323;lytic vacuole;5.64406649403193e-11!GO:0005764;lysosome;5.64406649403193e-11!GO:0043069;negative regulation of programmed cell death;6.16879037085932e-11!GO:0005789;endoplasmic reticulum membrane;7.37893706604973e-11!GO:0006464;protein modification process;7.44791027110803e-11!GO:0016604;nuclear body;8.9183047916927e-11!GO:0005793;ER-Golgi intermediate compartment;9.29660991710906e-11!GO:0043066;negative regulation of apoptosis;1.10024149797967e-10!GO:0051246;regulation of protein metabolic process;1.12937795980197e-10!GO:0008565;protein transporter activity;1.36429176650388e-10!GO:0006916;anti-apoptosis;1.59097691994419e-10!GO:0044248;cellular catabolic process;1.73589379244735e-10!GO:0003712;transcription cofactor activity;2.53721892416674e-10!GO:0006446;regulation of translational initiation;3.04141194278747e-10!GO:0006413;translational initiation;3.8270840637109e-10!GO:0043122;regulation of I-kappaB kinase/NF-kappaB cascade;4.72319880269765e-10!GO:0043123;positive regulation of I-kappaB kinase/NF-kappaB cascade;7.23269160362231e-10!GO:0031980;mitochondrial lumen;8.84952501864641e-10!GO:0005759;mitochondrial matrix;8.84952501864641e-10!GO:0006913;nucleocytoplasmic transport;1.08159778534696e-09!GO:0050789;regulation of biological process;1.12482029836631e-09!GO:0006259;DNA metabolic process;1.35919479636535e-09!GO:0007249;I-kappaB kinase/NF-kappaB cascade;1.62055674595329e-09!GO:0008639;small protein conjugating enzyme activity;1.80358653158369e-09!GO:0042775;organelle ATP synthesis coupled electron transport;1.89048818585082e-09!GO:0042773;ATP synthesis coupled electron transport;1.89048818585082e-09!GO:0016607;nuclear speck;1.89048818585082e-09!GO:0006366;transcription from RNA polymerase II promoter;1.9830122110635e-09!GO:0051169;nuclear transport;2.1030942575467e-09!GO:0004842;ubiquitin-protein ligase activity;2.40114128072317e-09!GO:0030964;NADH dehydrogenase complex (quinone);2.814814585259e-09!GO:0045271;respiratory chain complex I;2.814814585259e-09!GO:0005747;mitochondrial respiratory chain complex I;2.814814585259e-09!GO:0019787;small conjugating protein ligase activity;3.22323875766061e-09!GO:0016651;oxidoreductase activity, acting on NADH or NADPH;4.3514925411847e-09!GO:0003743;translation initiation factor activity;4.40298458487e-09!GO:0043687;post-translational protein modification;5.88291573444574e-09!GO:0005768;endosome;7.39303175473449e-09!GO:0006120;mitochondrial electron transport, NADH to ubiquinone;7.48305110123566e-09!GO:0005635;nuclear envelope;7.65120287617325e-09!GO:0007243;protein kinase cascade;9.3585324559664e-09!GO:0005761;mitochondrial ribosome;9.48412946945202e-09!GO:0000313;organellar ribosome;9.48412946945202e-09!GO:0017038;protein import;1.75027368947144e-08!GO:0051186;cofactor metabolic process;2.64293043608308e-08!GO:0046961;hydrogen ion transporting ATPase activity, rotational mechanism;4.04926200427362e-08!GO:0006888;ER to Golgi vesicle-mediated transport;5.50976758123789e-08!GO:0048475;coated membrane;6.81185780551476e-08!GO:0030117;membrane coat;6.81185780551476e-08!GO:0005770;late endosome;8.46418788979795e-08!GO:0046933;hydrogen ion transporting ATP synthase activity, rotational mechanism;1.0431706316302e-07!GO:0032553;ribonucleotide binding;1.11378880337087e-07!GO:0032555;purine ribonucleotide binding;1.11378880337087e-07!GO:0042254;ribosome biogenesis and assembly;1.26067573978282e-07!GO:0016564;transcription repressor activity;1.51102022318182e-07!GO:0007049;cell cycle;1.62129063529696e-07!GO:0006950;response to stress;1.7468328888991e-07!GO:0031965;nuclear membrane;2.49079044800483e-07!GO:0015986;ATP synthesis coupled proton transport;2.54509010713757e-07!GO:0015985;energy coupled proton transport, down electrochemical gradient;2.54509010713757e-07!GO:0007264;small GTPase mediated signal transduction;2.9036314897101e-07!GO:0006732;coenzyme metabolic process;3.12058989703834e-07!GO:0031252;leading edge;3.32106072609863e-07!GO:0017076;purine nucleotide binding;3.60480005022081e-07!GO:0031988;membrane-bound vesicle;3.61160478097164e-07!GO:0003924;GTPase activity;3.80027175044684e-07!GO:0044431;Golgi apparatus part;4.01655234630573e-07!GO:0009055;electron carrier activity;4.1502603313401e-07!GO:0031982;vesicle;4.29753651104679e-07!GO:0030120;vesicle coat;5.1266273649922e-07!GO:0030662;coated vesicle membrane;5.1266273649922e-07!GO:0016879;ligase activity, forming carbon-nitrogen bonds;5.64612401514936e-07!GO:0016023;cytoplasmic membrane-bound vesicle;6.01247775540809e-07!GO:0006793;phosphorus metabolic process;6.12436603804928e-07!GO:0006796;phosphate metabolic process;6.12436603804928e-07!GO:0019899;enzyme binding;8.26470521706782e-07!GO:0031410;cytoplasmic vesicle;8.68758272051436e-07!GO:0006164;purine nucleotide biosynthetic process;9.48923667451786e-07!GO:0016881;acid-amino acid ligase activity;9.8213863454632e-07!GO:0031324;negative regulation of cellular metabolic process;1.07686658060827e-06!GO:0065007;biological regulation;1.08930574930512e-06!GO:0009142;nucleoside triphosphate biosynthetic process;1.26945214611712e-06!GO:0009201;ribonucleoside triphosphate biosynthetic process;1.26945214611712e-06!GO:0048522;positive regulation of cellular process;1.32489589631176e-06!GO:0006163;purine nucleotide metabolic process;1.38230780524844e-06!GO:0009152;purine ribonucleotide biosynthetic process;1.4334901179587e-06!GO:0009259;ribonucleotide metabolic process;1.43483167453054e-06!GO:0005525;GTP binding;1.58546331352096e-06!GO:0030532;small nuclear ribonucleoprotein complex;1.62889801562573e-06!GO:0016469;proton-transporting two-sector ATPase complex;1.6551752055962e-06!GO:0000074;regulation of progression through cell cycle;1.72492015536231e-06!GO:0051170;nuclear import;1.86172072378003e-06!GO:0044453;nuclear membrane part;1.92684975049598e-06!GO:0051726;regulation of cell cycle;1.97542823910164e-06!GO:0009150;purine ribonucleotide metabolic process;2.21592275972811e-06!GO:0009206;purine ribonucleoside triphosphate biosynthetic process;2.27943573105464e-06!GO:0009145;purine nucleoside triphosphate biosynthetic process;2.27943573105464e-06!GO:0005788;endoplasmic reticulum lumen;2.39893236067653e-06!GO:0004386;helicase activity;2.50111531157343e-06!GO:0009260;ribonucleotide biosynthetic process;2.64538831743562e-06!GO:0006754;ATP biosynthetic process;3.05621164176362e-06!GO:0006753;nucleoside phosphate metabolic process;3.05621164176362e-06!GO:0016887;ATPase activity;3.16790812469162e-06!GO:0006606;protein import into nucleus;3.19156917916386e-06!GO:0016876;ligase activity, forming aminoacyl-tRNA and related compounds;3.19156917916386e-06!GO:0004812;aminoacyl-tRNA ligase activity;3.19156917916386e-06!GO:0016875;ligase activity, forming carbon-oxygen bonds;3.19156917916386e-06!GO:0042623;ATPase activity, coupled;3.36518754212465e-06!GO:0003714;transcription corepressor activity;3.74799573307301e-06!GO:0065002;intracellular protein transport across a membrane;4.35621996711029e-06!GO:0032446;protein modification by small protein conjugation;5.13549292299462e-06!GO:0009199;ribonucleoside triphosphate metabolic process;5.16980782636353e-06!GO:0005839;proteasome core complex (sensu Eukaryota);5.19353577212218e-06!GO:0043038;amino acid activation;5.27939885089208e-06!GO:0006418;tRNA aminoacylation for protein translation;5.27939885089208e-06!GO:0043039;tRNA aminoacylation;5.27939885089208e-06!GO:0006417;regulation of translation;5.5829801068074e-06!GO:0030036;actin cytoskeleton organization and biogenesis;5.59842337170702e-06!GO:0000245;spliceosome assembly;5.78133934122895e-06!GO:0008026;ATP-dependent helicase activity;5.78133934122895e-06!GO:0005643;nuclear pore;5.90575302132669e-06!GO:0009141;nucleoside triphosphate metabolic process;5.94676439525541e-06!GO:0016591;DNA-directed RNA polymerase II, holoenzyme;5.94676439525541e-06!GO:0009056;catabolic process;5.99337130076353e-06!GO:0044440;endosomal part;5.99495483462422e-06!GO:0010008;endosome membrane;5.99495483462422e-06!GO:0019829;cation-transporting ATPase activity;6.33881406485782e-06!GO:0009205;purine ribonucleoside triphosphate metabolic process;8.83547759292094e-06!GO:0009144;purine nucleoside triphosphate metabolic process;8.83547759292094e-06!GO:0016567;protein ubiquitination;9.34695184776974e-06!GO:0048518;positive regulation of biological process;1.13279433146791e-05!GO:0016044;membrane organization and biogenesis;1.21495899076328e-05!GO:0031202;RNA splicing factor activity, transesterification mechanism;1.26989165525807e-05!GO:0006399;tRNA metabolic process;1.27399558780279e-05!GO:0009060;aerobic respiration;1.30036614664873e-05!GO:0000139;Golgi membrane;1.31651871724462e-05!GO:0009892;negative regulation of metabolic process;1.44289899257763e-05!GO:0007005;mitochondrion organization and biogenesis;1.44289899257763e-05!GO:0003713;transcription coactivator activity;1.47670809536509e-05!GO:0050657;nucleic acid transport;1.53117614937049e-05!GO:0051236;establishment of RNA localization;1.53117614937049e-05!GO:0050658;RNA transport;1.53117614937049e-05!GO:0043623;cellular protein complex assembly;1.81522279017136e-05!GO:0016310;phosphorylation;1.82542621512305e-05!GO:0016563;transcription activator activity;1.8343582522316e-05!GO:0046034;ATP metabolic process;1.86083936838871e-05!GO:0048468;cell development;1.89221830379799e-05!GO:0045259;proton-transporting ATP synthase complex;2.12539001097424e-05!GO:0004298;threonine endopeptidase activity;2.15426002284083e-05!GO:0006613;cotranslational protein targeting to membrane;2.15505247733646e-05!GO:0007242;intracellular signaling cascade;2.23249034917216e-05!GO:0008361;regulation of cell size;2.54130745617339e-05!GO:0006403;RNA localization;2.60112260903174e-05!GO:0009967;positive regulation of signal transduction;2.72820889256769e-05!GO:0015078;hydrogen ion transmembrane transporter activity;2.81347349072279e-05!GO:0032561;guanyl ribonucleotide binding;2.87708678846927e-05!GO:0019001;guanyl nucleotide binding;2.87708678846927e-05!GO:0016049;cell growth;3.3383076578495e-05!GO:0030029;actin filament-based process;3.51690141292833e-05!GO:0005667;transcription factor complex;3.65997941304647e-05!GO:0015931;nucleobase, nucleoside, nucleotide and nucleic acid transport;3.78995706707889e-05!GO:0006752;group transfer coenzyme metabolic process;4.65181901301887e-05!GO:0006325;establishment and/or maintenance of chromatin architecture;5.46973044200174e-05!GO:0051789;response to protein stimulus;6.2563631994749e-05!GO:0006986;response to unfolded protein;6.2563631994749e-05!GO:0007265;Ras protein signal transduction;7.0310981158001e-05!GO:0016787;hydrolase activity;7.09521579947519e-05!GO:0003697;single-stranded DNA binding;7.50577249136911e-05!GO:0045934;negative regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;7.59299753944096e-05!GO:0009966;regulation of signal transduction;7.60738705694713e-05!GO:0005524;ATP binding;7.6160166406177e-05!GO:0016481;negative regulation of transcription;8.08723605704153e-05!GO:0045786;negative regulation of progression through cell cycle;8.23906409834857e-05!GO:0003724;RNA helicase activity;8.26568269833922e-05!GO:0042802;identical protein binding;8.89403217495665e-05!GO:0006357;regulation of transcription from RNA polymerase II promoter;9.93881867125361e-05!GO:0065009;regulation of a molecular function;0.000100428875450997!GO:0030867;rough endoplasmic reticulum membrane;0.00010054673651863!GO:0006974;response to DNA damage stimulus;0.000103684006911369!GO:0045333;cellular respiration;0.000103684006911369!GO:0006364;rRNA processing;0.000111641799967439!GO:0005774;vacuolar membrane;0.000120339597921961!GO:0016072;rRNA metabolic process;0.000122842882238842!GO:0006323;DNA packaging;0.000127081265457579!GO:0046930;pore complex;0.000135287497283036!GO:0033116;ER-Golgi intermediate compartment membrane;0.000144185659064974!GO:0051427;hormone receptor binding;0.000144773601999614!GO:0031326;regulation of cellular biosynthetic process;0.000148814593064262!GO:0043566;structure-specific DNA binding;0.000150243947970641!GO:0016853;isomerase activity;0.000157320306222232!GO:0000151;ubiquitin ligase complex;0.000175979888880591!GO:0032559;adenyl ribonucleotide binding;0.000175979888880591!GO:0006099;tricarboxylic acid cycle;0.000179586871978756!GO:0046356;acetyl-CoA catabolic process;0.000179586871978756!GO:0019843;rRNA binding;0.000201949169056363!GO:0001558;regulation of cell growth;0.000213457712698163!GO:0008286;insulin receptor signaling pathway;0.00021772618173677!GO:0051028;mRNA transport;0.000222018615167395!GO:0009615;response to virus;0.000223994655598171!GO:0022402;cell cycle process;0.000234690805189147!GO:0005798;Golgi-associated vesicle;0.00025162182105048!GO:0019222;regulation of metabolic process;0.00025470438052492!GO:0035257;nuclear hormone receptor binding;0.000271858658329381!GO:0009889;regulation of biosynthetic process;0.00027894787948716!GO:0030133;transport vesicle;0.000300498699811407!GO:0008092;cytoskeletal protein binding;0.000314810154034173!GO:0005741;mitochondrial outer membrane;0.00034077045966924!GO:0006084;acetyl-CoA metabolic process;0.000340905410844596!GO:0055086;nucleobase, nucleoside and nucleotide metabolic process;0.000361234162124451!GO:0009719;response to endogenous stimulus;0.000373838263652348!GO:0005048;signal sequence binding;0.000377239485374918!GO:0016568;chromatin modification;0.000389964638887946!GO:0016197;endosome transport;0.000389964638887946!GO:0051188;cofactor biosynthetic process;0.000391493012804157!GO:0004576;oligosaccharyl transferase activity;0.000457530758713786!GO:0031968;organelle outer membrane;0.000462747054247479!GO:0003729;mRNA binding;0.000481529346191686!GO:0044437;vacuolar part;0.000483195625655701!GO:0030554;adenyl nucleotide binding;0.000494874771801481!GO:0019867;outer membrane;0.000504005629552223!GO:0008250;oligosaccharyl transferase complex;0.000515716281529637!GO:0005791;rough endoplasmic reticulum;0.000516596672124072!GO:0031902;late endosome membrane;0.000519568146003552!GO:0030118;clathrin coat;0.000519568146003552!GO:0005765;lysosomal membrane;0.000555602340136384!GO:0005769;early endosome;0.00061438708642754!GO:0001726;ruffle;0.000634804987696723!GO:0005885;Arp2/3 protein complex;0.00066652672744078!GO:0006612;protein targeting to membrane;0.000749987132515207!GO:0004579;dolichyl-diphosphooligosaccharide-protein glycotransferase activity;0.000763829184360304!GO:0051235;maintenance of localization;0.00078680334979324!GO:0006891;intra-Golgi vesicle-mediated transport;0.000875516310228429!GO:0051187;cofactor catabolic process;0.000969477504461314!GO:0006281;DNA repair;0.00105864769821414!GO:0065004;protein-DNA complex assembly;0.0010683093975574!GO:0009109;coenzyme catabolic process;0.00114673357383189!GO:0008186;RNA-dependent ATPase activity;0.00116405092395708!GO:0043021;ribonucleoprotein binding;0.00123063858521445!GO:0048471;perinuclear region of cytoplasm;0.00123324884084631!GO:0033178;proton-transporting two-sector ATPase complex, catalytic domain;0.00130034105426655!GO:0003755;peptidyl-prolyl cis-trans isomerase activity;0.00132938846720434!GO:0043065;positive regulation of apoptosis;0.00134916031219704!GO:0045454;cell redox homeostasis;0.00135676148013585!GO:0051920;peroxiredoxin activity;0.00142710314395679!GO:0005762;mitochondrial large ribosomal subunit;0.00142849528664056!GO:0000315;organellar large ribosomal subunit;0.00142849528664056!GO:0018196;peptidyl-asparagine modification;0.00145483208831805!GO:0018279;protein amino acid N-linked glycosylation via asparagine;0.00145483208831805!GO:0015077;monovalent inorganic cation transmembrane transporter activity;0.00154970295659746!GO:0045892;negative regulation of transcription, DNA-dependent;0.00156283344419859!GO:0009117;nucleotide metabolic process;0.00161171468194367!GO:0016859;cis-trans isomerase activity;0.00165847857598078!GO:0045261;proton-transporting ATP synthase complex, catalytic core F(1);0.00168698480569911!GO:0051252;regulation of RNA metabolic process;0.00168698480569911!GO:0045045;secretory pathway;0.00179870596379594!GO:0009108;coenzyme biosynthetic process;0.00181794406171901!GO:0000785;chromatin;0.00181843888139101!GO:0051276;chromosome organization and biogenesis;0.00189024609270249!GO:0046983;protein dimerization activity;0.00189543525419368!GO:0030530;heterogeneous nuclear ribonucleoprotein complex;0.00196834131537563!GO:0032940;secretion by cell;0.00200461227304547!GO:0030027;lamellipodium;0.00205003334403528!GO:0001666;response to hypoxia;0.00206499960921386!GO:0043068;positive regulation of programmed cell death;0.00213590408746861!GO:0005905;coated pit;0.00227512057860527!GO:0005912;adherens junction;0.00233014629758346!GO:0005753;mitochondrial proton-transporting ATP synthase complex;0.002586667833117!GO:0007040;lysosome organization and biogenesis;0.00258972072821408!GO:0016779;nucleotidyltransferase activity;0.00261167906271903!GO:0030119;AP-type membrane coat adaptor complex;0.00300899585033906!GO:0050790;regulation of catalytic activity;0.00300899585033906!GO:0008654;phospholipid biosynthetic process;0.00303088038372539!GO:0006333;chromatin assembly or disassembly;0.00312858457357759!GO:0004004;ATP-dependent RNA helicase activity;0.00316407310769031!GO:0007033;vacuole organization and biogenesis;0.00326250971341397!GO:0033673;negative regulation of kinase activity;0.00326250971341397!GO:0006469;negative regulation of protein kinase activity;0.00326250971341397!GO:0005083;small GTPase regulator activity;0.0034022247169095!GO:0006897;endocytosis;0.00346532364372963!GO:0010324;membrane invagination;0.00346532364372963!GO:0006414;translational elongation;0.0039005491877005!GO:0005852;eukaryotic translation initiation factor 3 complex;0.00443599371413254!GO:0048500;signal recognition particle;0.00458983213083601!GO:0030134;ER to Golgi transport vesicle;0.00461716504054019!GO:0051168;nuclear export;0.00469727563087389!GO:0007050;cell cycle arrest;0.00476801948243706!GO:0045935;positive regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;0.00495552201814212!GO:0016679;oxidoreductase activity, acting on diphenols and related substances as donors;0.00517968062371939!GO:0016681;oxidoreductase activity, acting on diphenols and related substances as donors, cytochrome as acceptor;0.00517968062371939!GO:0008121;ubiquinol-cytochrome-c reductase activity;0.00517968062371939!GO:0016740;transferase activity;0.00537008333878138!GO:0030127;COPII vesicle coat;0.00537008333878138!GO:0012507;ER to Golgi transport vesicle membrane;0.00537008333878138!GO:0030658;transport vesicle membrane;0.00538932769313687!GO:0051348;negative regulation of transferase activity;0.00565967084221222!GO:0051087;chaperone binding;0.00568562791176221!GO:0006626;protein targeting to mitochondrion;0.00571616692627992!GO:0008283;cell proliferation;0.00597760478580213!GO:0035258;steroid hormone receptor binding;0.00610808288823546!GO:0030176;integral to endoplasmic reticulum membrane;0.00614256864022419!GO:0002474;antigen processing and presentation of peptide antigen via MHC class I;0.00630935076027272!GO:0030131;clathrin adaptor complex;0.00633380838740527!GO:0030218;erythrocyte differentiation;0.00653937470865843!GO:0043681;protein import into mitochondrion;0.00667519776624115!GO:0006402;mRNA catabolic process;0.00673949352051005!GO:0030041;actin filament polymerization;0.00687092361463827!GO:0045941;positive regulation of transcription;0.00688421069469888!GO:0008047;enzyme activator activity;0.00694412417188954!GO:0005684;U2-dependent spliceosome;0.00716285455754244!GO:0006487;protein amino acid N-linked glycosylation;0.00716557700005547!GO:0042625;ATPase activity, coupled to transmembrane movement of ions;0.00731442985423711!GO:0000314;organellar small ribosomal subunit;0.00745247050307009!GO:0005763;mitochondrial small ribosomal subunit;0.00745247050307009!GO:0046822;regulation of nucleocytoplasmic transport;0.00756927840069985!GO:0006839;mitochondrial transport;0.00768954774191946!GO:0051338;regulation of transferase activity;0.00773790195482307!GO:0017166;vinculin binding;0.00777239213598104!GO:0030663;COPI coated vesicle membrane;0.00807336316708075!GO:0030126;COPI vesicle coat;0.00807336316708075!GO:0016860;intramolecular oxidoreductase activity;0.00819429281638272!GO:0016281;eukaryotic translation initiation factor 4F complex;0.00823683696146578!GO:0051270;regulation of cell motility;0.00843186096528226!GO:0005838;proteasome regulatory particle (sensu Eukaryota);0.00871291751984436!GO:0045893;positive regulation of transcription, DNA-dependent;0.00879995921738225!GO:0051101;regulation of DNA binding;0.00899222553004144!GO:0000122;negative regulation of transcription from RNA polymerase II promoter;0.00923204122183329!GO:0043488;regulation of mRNA stability;0.00977802799163086!GO:0043487;regulation of RNA stability;0.00977802799163086!GO:0030833;regulation of actin filament polymerization;0.00982256289778784!GO:0040008;regulation of growth;0.00982422174595845!GO:0030132;clathrin coat of coated pit;0.00983978826016367!GO:0006614;SRP-dependent cotranslational protein targeting to membrane;0.00983978826016367!GO:0045047;protein targeting to ER;0.00983978826016367!GO:0045185;maintenance of protein localization;0.00995215003618983!GO:0006401;RNA catabolic process;0.00996899168549308!GO:0031901;early endosome membrane;0.00997550437255595!GO:0030521;androgen receptor signaling pathway;0.0100563841847131!GO:0008234;cysteine-type peptidase activity;0.0101303282069163!GO:0008632;apoptotic program;0.010164809706597!GO:0005786;signal recognition particle, endoplasmic reticulum targeting;0.0107342994444195!GO:0031323;regulation of cellular metabolic process;0.0108400598158799!GO:0030659;cytoplasmic vesicle membrane;0.0109842478143444!GO:0045637;regulation of myeloid cell differentiation;0.0113283665854807!GO:0032507;maintenance of cellular protein localization;0.0113566756995974!GO:0016862;intramolecular oxidoreductase activity, interconverting keto- and enol-groups;0.0116128048745425!GO:0018193;peptidyl-amino acid modification;0.0117566421437081!GO:0005869;dynactin complex;0.0123738761628318!GO:0044262;cellular carbohydrate metabolic process;0.0124024129178208!GO:0030695;GTPase regulator activity;0.012831462734012!GO:0003899;DNA-directed RNA polymerase activity;0.0135135920909469!GO:0016772;transferase activity, transferring phosphorus-containing groups;0.0137175117985457!GO:0048487;beta-tubulin binding;0.0139018693663311!GO:0005099;Ras GTPase activator activity;0.0144200251265461!GO:0043549;regulation of kinase activity;0.0144455530592102!GO:0016363;nuclear matrix;0.014593766022272!GO:0007266;Rho protein signal transduction;0.0147728992875059!GO:0015980;energy derivation by oxidation of organic compounds;0.0148607662851883!GO:0030660;Golgi-associated vesicle membrane;0.0148865466938015!GO:0007034;vacuolar transport;0.0153620471715248!GO:0047485;protein N-terminus binding;0.0155874600615715!GO:0045263;proton-transporting ATP synthase complex, coupling factor F(o);0.0159083459102361!GO:0033177;proton-transporting two-sector ATPase complex, proton-transporting domain;0.0159083459102361!GO:0016791;phosphoric monoester hydrolase activity;0.0161375131126438!GO:0008312;7S RNA binding;0.0162053344180203!GO:0006917;induction of apoptosis;0.0162053344180203!GO:0043087;regulation of GTPase activity;0.0166358447043144!GO:0006890;retrograde vesicle-mediated transport, Golgi to ER;0.0167426153961173!GO:0031529;ruffle organization and biogenesis;0.0169981084979051!GO:0006650;glycerophospholipid metabolic process;0.0169981084979051!GO:0003690;double-stranded DNA binding;0.0173933973833092!GO:0030384;phosphoinositide metabolic process;0.0175061249083821!GO:0045936;negative regulation of phosphate metabolic process;0.0178051677009317!GO:0007167;enzyme linked receptor protein signaling pathway;0.0180411728725678!GO:0016706;oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors;0.0190259809134903!GO:0031072;heat shock protein binding;0.0191004602947205!GO:0006091;generation of precursor metabolites and energy;0.0194621588397539!GO:0009607;response to biotic stimulus;0.0200001229605189!GO:0051336;regulation of hydrolase activity;0.0206134556277176!GO:0003711;transcription elongation regulator activity;0.0208414409500858!GO:0005694;chromosome;0.0210152435430801!GO:0008139;nuclear localization sequence binding;0.0210152435430801!GO:0006376;mRNA splice site selection;0.0210152435430801!GO:0000389;nuclear mRNA 3'-splice site recognition;0.0210152435430801!GO:0051051;negative regulation of transport;0.0213059595825924!GO:0051223;regulation of protein transport;0.0214600714080725!GO:0012502;induction of programmed cell death;0.0215900325803069!GO:0022415;viral reproductive process;0.021643315413605!GO:0031625;ubiquitin protein ligase binding;0.021992868850568!GO:0005813;centrosome;0.0220184223902552!GO:0043022;ribosome binding;0.0227292786820115!GO:0030125;clathrin vesicle coat;0.0232155463466963!GO:0030665;clathrin coated vesicle membrane;0.0232155463466963!GO:0030518;steroid hormone receptor signaling pathway;0.0232637567863375!GO:0003725;double-stranded RNA binding;0.0233906163644294!GO:0005096;GTPase activator activity;0.0238453276762322!GO:0017015;regulation of transforming growth factor beta receptor signaling pathway;0.0238453276762322!GO:0006979;response to oxidative stress;0.0240379256033405!GO:0006352;transcription initiation;0.0245303813551197!GO:0004563;beta-N-acetylhexosaminidase activity;0.0250237325242021!GO:0015405;P-P-bond-hydrolysis-driven transmembrane transporter activity;0.0252275799541591!GO:0015399;primary active transmembrane transporter activity;0.0252275799541591!GO:0040011;locomotion;0.0254041541573529!GO:0040012;regulation of locomotion;0.0254737918743819!GO:0051651;maintenance of cellular localization;0.0254737918743819!GO:0045859;regulation of protein kinase activity;0.0254842332816299!GO:0016491;oxidoreductase activity;0.026137583390286!GO:0044433;cytoplasmic vesicle part;0.0263054047161225!GO:0016780;phosphotransferase activity, for other substituted phosphate groups;0.026799301296154!GO:0050681;androgen receptor binding;0.0268077227333527!GO:0004860;protein kinase inhibitor activity;0.0269002524132259!GO:0012506;vesicle membrane;0.0271179515219104!GO:0030137;COPI-coated vesicle;0.0271179515219104!GO:0008154;actin polymerization and/or depolymerization;0.0280169898487681!GO:0006818;hydrogen transport;0.0285029566277178!GO:0019372;lipoxygenase pathway;0.0297036436231571!GO:0022406;membrane docking;0.0299878972253002!GO:0048278;vesicle docking;0.0299878972253002!GO:0001725;stress fiber;0.0301846986884927!GO:0032432;actin filament bundle;0.0301846986884927!GO:0045767;regulation of anti-apoptosis;0.0303163584438196!GO:0042326;negative regulation of phosphorylation;0.0304604238280891!GO:0006509;membrane protein ectodomain proteolysis;0.030793345463371!GO:0033619;membrane protein proteolysis;0.030793345463371!GO:0006260;DNA replication;0.0308909130014944!GO:0006611;protein export from nucleus;0.0309519667769551!GO:0045792;negative regulation of cell size;0.031163984534645!GO:0051220;cytoplasmic sequestering of protein;0.0314035389292381!GO:0007162;negative regulation of cell adhesion;0.0314035389292381!GO:0044427;chromosomal part;0.0317561408000996!GO:0000079;regulation of cyclin-dependent protein kinase activity;0.0318306797813077!GO:0051325;interphase;0.0318355909235759!GO:0007041;lysosomal transport;0.0321080812065105!GO:0051098;regulation of binding;0.0325665477545257!GO:0006904;vesicle docking during exocytosis;0.0330884408997409!GO:0019079;viral genome replication;0.0331244697258407!GO:0009893;positive regulation of metabolic process;0.033304624452637!GO:0051674;localization of cell;0.0333074650849915!GO:0006928;cell motility;0.0333074650849915!GO:0030308;negative regulation of cell growth;0.0342293566447959!GO:0007030;Golgi organization and biogenesis;0.0342762742297593!GO:0009165;nucleotide biosynthetic process;0.0343484954383017!GO:0005832;chaperonin-containing T-complex;0.0348248408155189!GO:0006026;aminoglycan catabolic process;0.034846793994809!GO:0006027;glycosaminoglycan catabolic process;0.034846793994809!GO:0051287;NAD binding;0.0352792277613516!GO:0007006;mitochondrial membrane organization and biogenesis;0.0353351813679524!GO:0030880;RNA polymerase complex;0.0353744191575436!GO:0003779;actin binding;0.0358534976412911!GO:0015992;proton transport;0.0358871273077618!GO:0046966;thyroid hormone receptor binding;0.0360118726800361!GO:0003756;protein disulfide isomerase activity;0.0367709366203003!GO:0016864;intramolecular oxidoreductase activity, transposing S-S bonds;0.0367709366203003!GO:0000278;mitotic cell cycle;0.0369866025144832!GO:0016311;dephosphorylation;0.0375617608121027!GO:0006693;prostaglandin metabolic process;0.0376157538462659!GO:0006692;prostanoid metabolic process;0.0376157538462659!GO:0043560;insulin receptor substrate binding;0.0376929087278037!GO:0005938;cell cortex;0.0385448258639979!GO:0016584;nucleosome positioning;0.0388225504192534!GO:0051128;regulation of cellular component organization and biogenesis;0.0395307743031214!GO:0043284;biopolymer biosynthetic process;0.0395962474279493!GO:0000059;protein import into nucleus, docking;0.0396352533417095!GO:0043433;negative regulation of transcription factor activity;0.0397439216660009!GO:0006984;ER-nuclear signaling pathway;0.0398585129087543!GO:0060090;molecular adaptor activity;0.0401980582812452!GO:0008637;apoptotic mitochondrial changes;0.0402365158891733!GO:0003746;translation elongation factor activity;0.0403861311161595!GO:0010468;regulation of gene expression;0.0403861311161595!GO:0046489;phosphoinositide biosynthetic process;0.0404738995355945!GO:0005925;focal adhesion;0.0406736119214129!GO:0015036;disulfide oxidoreductase activity;0.0408547695801487!GO:0051329;interphase of mitotic cell cycle;0.0409221771401589!GO:0030155;regulation of cell adhesion;0.0424667826521537!GO:0046519;sphingoid metabolic process;0.0428294196302192!GO:0008320;protein transmembrane transporter activity;0.0428294196302192!GO:0001527;microfibril;0.0429226766670916!GO:0006518;peptide metabolic process;0.0429226766670916!GO:0005665;DNA-directed RNA polymerase II, core complex;0.0433977156874016!GO:0016676;oxidoreductase activity, acting on heme group of donors, oxygen as acceptor;0.0433977156874016!GO:0015002;heme-copper terminal oxidase activity;0.0433977156874016!GO:0016675;oxidoreductase activity, acting on heme group of donors;0.0433977156874016!GO:0004129;cytochrome-c oxidase activity;0.0433977156874016!GO:0042994;cytoplasmic sequestering of transcription factor;0.0435715360630438!GO:0004721;phosphoprotein phosphatase activity;0.0435771408293168!GO:0019838;growth factor binding;0.0438325738160103!GO:0030032;lamellipodium biogenesis;0.0461137021639229!GO:0043161;proteasomal ubiquitin-dependent protein catabolic process;0.0461322299088787!GO:0050811;GABA receptor binding;0.0462880497443592!GO:0006334;nucleosome assembly;0.046482319059245!GO:0030031;cell projection biogenesis;0.0475075472077262!GO:0007178;transmembrane receptor protein serine/threonine kinase signaling pathway;0.0476082005659853!GO:0007179;transforming growth factor beta receptor signaling pathway;0.0476082005659853!GO:0006354;RNA elongation;0.0481238918402925!GO:0005784;translocon complex;0.0486761547986996!GO:0006701;progesterone biosynthetic process;0.0499222555374333 | |||
|sample_id=12240 | |sample_id=12240 | ||
|sample_note= | |sample_note= | ||
| Line 76: | Line 105: | ||
|sample_tissue=chorion | |sample_tissue=chorion | ||
|top_motifs=NKX2-1,4:2.26814339562;EP300:2.21924163455;HMX1:2.06347404371;UFEwm:1.95381577387;FOXL1:1.81299465544;IKZF1:1.80428687345;TBP:1.71079587481;STAT2,4,6:1.58561133193;SNAI1..3:1.56545158888;FOXO1,3,4:1.55284775736;RORA:1.5211736619;FOXM1:1.50817244524;FOX{D1,D2}:1.43133931365;GZF1:1.30628910101;BPTF:1.24010809959;GCM1,2:1.23043272391;EBF1:1.214529136;T:1.13259325945;HOXA9_MEIS1:1.09249897285;AR:1.08159231628;HIF1A:1.07868194363;EVI1:1.04556665299;PAX4:1.04372897535;EN1,2:1.04040397822;IRF7:0.985129877356;TBX4,5:0.981179186657;ALX4:0.968274726851;TLX2:0.950107435593;SMAD1..7,9:0.89463098363;CDC5L:0.875660188651;TEAD1:0.871045864307;RXRA_VDR{dimer}:0.865837147583;FOXP3:0.794499785755;MAFB:0.789578915805;XCPE1{core}:0.779966501305;IRF1,2:0.765057342822;AIRE:0.718724048471;HSF1,2:0.693512233342;SPZ1:0.673640059266;HMGA1,2:0.637078037087;HLF:0.594155276833;ZBTB16:0.564177582814;ZEB1:0.547130168572;MYBL2:0.543823874552;GLI1..3:0.537896049116;POU3F1..4:0.526990387636;KLF4:0.513352800083;PAX1,9:0.502332014245;POU2F1..3:0.497016607247;TFAP2{A,C}:0.472237045642;NKX3-2:0.467494726068;RXR{A,B,G}_{NR1H2,PPAR}dimers:0.466461863589;SOX5:0.448633778001;ARID5B:0.409971463919;ZNF148:0.401383973414;TP53:0.341505731536;GATA6:0.332600916587;ONECUT1,2:0.321473226365;NR6A1:0.319548246249;FOS_FOS{B,L1}_JUN{B,D}:0.312073302743;BACH2:0.281802187824;PPARG:0.269580262161;SRF:0.268747853172;ZBTB6:0.264754131952;NKX2-2,8:0.246082841813;MED-1{core}:0.241042559506;ESR1:0.232563977717;bHLH_family:0.217195501921;SP1:0.206616506137;FOXN1:0.194764707326;MYOD1:0.178493234517;ATF6:0.174187770384;POU1F1:0.158838521336;NFKB1_REL_RELA:0.153279847264;ZNF238:0.14161408756;NFIL3:0.129765065257;FOSL2:0.127464612161;IKZF2:0.0897318809261;RXR{A,B,G}:0.087406985661;MAZ:0.0850174610345;SPI1:0.0811765940092;STAT1,3:0.073164294;ETS1,2:0.0500858676584;GATA4:0.0402293752865;HOX{A4,D4}:0.0309832165727;PRDM1:0.0208055297304;PAX2:0.00877069651787;MTE{core}:-0.00684878206289;HOX{A6,A7,B6,B7}:-0.0106100063383;PAX3,7:-0.0141834324317;NKX3-1:-0.0179250604255;HNF1A:-0.0494673494362;FOXQ1:-0.060142744369;XBP1:-0.0610326062512;SPIB:-0.0634640415936;GTF2I:-0.0683702329794;RUNX1..3:-0.0737630043156;TFAP4:-0.0748954045735;JUN:-0.100360934712;ZNF384:-0.100721532266;CEBPA,B_DDIT3:-0.125116313544;ZNF423:-0.138922950196;TFCP2:-0.139565795807;NANOG{mouse}:-0.141554789754;DBP:-0.151013735962;PAX8:-0.186313068248;NFE2:-0.205545798664;NR1H4:-0.211302388894;NFATC1..3:-0.226093697213;PATZ1:-0.231267819708;HNF4A_NR2F1,2:-0.231795206429;SOX17:-0.259784044607;OCT4_SOX2{dimer}:-0.29643254572;SREBF1,2:-0.321354307198;CREB1:-0.326017993405;TAL1_TCF{3,4,12}:-0.377872900314;NR3C1:-0.380795991072;HAND1,2:-0.384885122559;ELF1,2,4:-0.392061613138;TOPORS:-0.405736815145;ATF4:-0.427153989149;TEF:-0.452952105419;ATF2:-0.45798852593;TLX1..3_NFIC{dimer}:-0.464542041611;MYFfamily:-0.486228870303;POU6F1:-0.490599953735;MEF2{A,B,C,D}:-0.492292553359;ATF5_CREB3:-0.503179314789;TFAP2B:-0.503725430782;MTF1:-0.532094735172;FOX{I1,J2}:-0.539665826804;ZIC1..3:-0.54140654104;ZFP161:-0.545269138959;HIC1:-0.566519389586;DMAP1_NCOR{1,2}_SMARC:-0.605107174564;REST:-0.611297537959;EGR1..3:-0.627715089487;FOXD3:-0.632267821823;HES1:-0.633604846333;RREB1:-0.65426968149;FOX{F1,F2,J1}:-0.66299846474;MZF1:-0.675083688009;CDX1,2,4:-0.685167362619;RFX2..5_RFXANK_RFXAP:-0.68915560161;ELK1,4_GABP{A,B1}:-0.693566509402;GTF2A1,2:-0.705236981521;PAX6:-0.722188305834;STAT5{A,B}:-0.770513165331;TGIF1:-0.784518301017;NFE2L1:-0.793464390256;HOX{A5,B5}:-0.833615260491;RFX1:-0.841226618191;HBP1_HMGB_SSRP1_UBTF:-0.843852301419;NFE2L2:-0.851743017568;ESRRA:-0.863993369336;CUX2:-0.907754939158;PDX1:-0.913205400546;PAX5:-0.918001559931;VSX1,2:-0.92814905498;LMO2:-0.935148864446;AHR_ARNT_ARNT2:-0.944743456856;E2F1..5:-0.953078947619;ALX1:-0.968014647978;NHLH1,2:-0.981596576301;GFI1B:-1.01984318362;LEF1_TCF7_TCF7L1,2:-1.0257812254;ZNF143:-1.03537137585;NFY{A,B,C}:-1.09862429486;SOX2:-1.12180906441;NRF1:-1.13667208926;MYB:-1.15864520908;GFI1:-1.16125930554;FOXP1:-1.16664004359;SOX{8,9,10}:-1.24015574208;PITX1..3:-1.25271078539;NFIX:-1.36774345967;NKX2-3_NKX2-5:-1.42845948715;PRRX1,2:-1.44765852392;BREu{core}:-1.45898106034;YY1:-1.45995466856;RBPJ:-1.54394688303;FOXA2:-1.55703863894;PBX1:-1.56144466078;ADNP_IRX_SIX_ZHX:-1.56499472558;NR5A1,2:-1.64055019847;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:-1.68011478333;LHX3,4:-1.78405853562;TFDP1:-1.80455850369;CRX:-2.12749331887;POU5F1:-2.1726388458;NANOG:-2.36988958196;NKX6-1,2:-2.67279176287 | |top_motifs=NKX2-1,4:2.26814339562;EP300:2.21924163455;HMX1:2.06347404371;UFEwm:1.95381577387;FOXL1:1.81299465544;IKZF1:1.80428687345;TBP:1.71079587481;STAT2,4,6:1.58561133193;SNAI1..3:1.56545158888;FOXO1,3,4:1.55284775736;RORA:1.5211736619;FOXM1:1.50817244524;FOX{D1,D2}:1.43133931365;GZF1:1.30628910101;BPTF:1.24010809959;GCM1,2:1.23043272391;EBF1:1.214529136;T:1.13259325945;HOXA9_MEIS1:1.09249897285;AR:1.08159231628;HIF1A:1.07868194363;EVI1:1.04556665299;PAX4:1.04372897535;EN1,2:1.04040397822;IRF7:0.985129877356;TBX4,5:0.981179186657;ALX4:0.968274726851;TLX2:0.950107435593;SMAD1..7,9:0.89463098363;CDC5L:0.875660188651;TEAD1:0.871045864307;RXRA_VDR{dimer}:0.865837147583;FOXP3:0.794499785755;MAFB:0.789578915805;XCPE1{core}:0.779966501305;IRF1,2:0.765057342822;AIRE:0.718724048471;HSF1,2:0.693512233342;SPZ1:0.673640059266;HMGA1,2:0.637078037087;HLF:0.594155276833;ZBTB16:0.564177582814;ZEB1:0.547130168572;MYBL2:0.543823874552;GLI1..3:0.537896049116;POU3F1..4:0.526990387636;KLF4:0.513352800083;PAX1,9:0.502332014245;POU2F1..3:0.497016607247;TFAP2{A,C}:0.472237045642;NKX3-2:0.467494726068;RXR{A,B,G}_{NR1H2,PPAR}dimers:0.466461863589;SOX5:0.448633778001;ARID5B:0.409971463919;ZNF148:0.401383973414;TP53:0.341505731536;GATA6:0.332600916587;ONECUT1,2:0.321473226365;NR6A1:0.319548246249;FOS_FOS{B,L1}_JUN{B,D}:0.312073302743;BACH2:0.281802187824;PPARG:0.269580262161;SRF:0.268747853172;ZBTB6:0.264754131952;NKX2-2,8:0.246082841813;MED-1{core}:0.241042559506;ESR1:0.232563977717;bHLH_family:0.217195501921;SP1:0.206616506137;FOXN1:0.194764707326;MYOD1:0.178493234517;ATF6:0.174187770384;POU1F1:0.158838521336;NFKB1_REL_RELA:0.153279847264;ZNF238:0.14161408756;NFIL3:0.129765065257;FOSL2:0.127464612161;IKZF2:0.0897318809261;RXR{A,B,G}:0.087406985661;MAZ:0.0850174610345;SPI1:0.0811765940092;STAT1,3:0.073164294;ETS1,2:0.0500858676584;GATA4:0.0402293752865;HOX{A4,D4}:0.0309832165727;PRDM1:0.0208055297304;PAX2:0.00877069651787;MTE{core}:-0.00684878206289;HOX{A6,A7,B6,B7}:-0.0106100063383;PAX3,7:-0.0141834324317;NKX3-1:-0.0179250604255;HNF1A:-0.0494673494362;FOXQ1:-0.060142744369;XBP1:-0.0610326062512;SPIB:-0.0634640415936;GTF2I:-0.0683702329794;RUNX1..3:-0.0737630043156;TFAP4:-0.0748954045735;JUN:-0.100360934712;ZNF384:-0.100721532266;CEBPA,B_DDIT3:-0.125116313544;ZNF423:-0.138922950196;TFCP2:-0.139565795807;NANOG{mouse}:-0.141554789754;DBP:-0.151013735962;PAX8:-0.186313068248;NFE2:-0.205545798664;NR1H4:-0.211302388894;NFATC1..3:-0.226093697213;PATZ1:-0.231267819708;HNF4A_NR2F1,2:-0.231795206429;SOX17:-0.259784044607;OCT4_SOX2{dimer}:-0.29643254572;SREBF1,2:-0.321354307198;CREB1:-0.326017993405;TAL1_TCF{3,4,12}:-0.377872900314;NR3C1:-0.380795991072;HAND1,2:-0.384885122559;ELF1,2,4:-0.392061613138;TOPORS:-0.405736815145;ATF4:-0.427153989149;TEF:-0.452952105419;ATF2:-0.45798852593;TLX1..3_NFIC{dimer}:-0.464542041611;MYFfamily:-0.486228870303;POU6F1:-0.490599953735;MEF2{A,B,C,D}:-0.492292553359;ATF5_CREB3:-0.503179314789;TFAP2B:-0.503725430782;MTF1:-0.532094735172;FOX{I1,J2}:-0.539665826804;ZIC1..3:-0.54140654104;ZFP161:-0.545269138959;HIC1:-0.566519389586;DMAP1_NCOR{1,2}_SMARC:-0.605107174564;REST:-0.611297537959;EGR1..3:-0.627715089487;FOXD3:-0.632267821823;HES1:-0.633604846333;RREB1:-0.65426968149;FOX{F1,F2,J1}:-0.66299846474;MZF1:-0.675083688009;CDX1,2,4:-0.685167362619;RFX2..5_RFXANK_RFXAP:-0.68915560161;ELK1,4_GABP{A,B1}:-0.693566509402;GTF2A1,2:-0.705236981521;PAX6:-0.722188305834;STAT5{A,B}:-0.770513165331;TGIF1:-0.784518301017;NFE2L1:-0.793464390256;HOX{A5,B5}:-0.833615260491;RFX1:-0.841226618191;HBP1_HMGB_SSRP1_UBTF:-0.843852301419;NFE2L2:-0.851743017568;ESRRA:-0.863993369336;CUX2:-0.907754939158;PDX1:-0.913205400546;PAX5:-0.918001559931;VSX1,2:-0.92814905498;LMO2:-0.935148864446;AHR_ARNT_ARNT2:-0.944743456856;E2F1..5:-0.953078947619;ALX1:-0.968014647978;NHLH1,2:-0.981596576301;GFI1B:-1.01984318362;LEF1_TCF7_TCF7L1,2:-1.0257812254;ZNF143:-1.03537137585;NFY{A,B,C}:-1.09862429486;SOX2:-1.12180906441;NRF1:-1.13667208926;MYB:-1.15864520908;GFI1:-1.16125930554;FOXP1:-1.16664004359;SOX{8,9,10}:-1.24015574208;PITX1..3:-1.25271078539;NFIX:-1.36774345967;NKX2-3_NKX2-5:-1.42845948715;PRRX1,2:-1.44765852392;BREu{core}:-1.45898106034;YY1:-1.45995466856;RBPJ:-1.54394688303;FOXA2:-1.55703863894;PBX1:-1.56144466078;ADNP_IRX_SIX_ZHX:-1.56499472558;NR5A1,2:-1.64055019847;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:-1.68011478333;LHX3,4:-1.78405853562;TFDP1:-1.80455850369;CRX:-2.12749331887;POU5F1:-2.1726388458;NANOG:-2.36988958196;NKX6-1,2:-2.67279176287 | ||
|xref= | |||
|zenbu_report=https://fantom.gsc.riken.jp/zenbu/reports/#miRNA_expression_atlas_human;search_select_hide=table111:FF:12240-129G8;search_select_hide=table117:FF:12240-129G8 | |||
}} | }} | ||
Latest revision as of 18:36, 4 June 2020
| Name: | chorionic membrane cells, donor3 |
|---|---|
| Species: | Human (Homo sapiens) |
| Library ID: | CNhs12380 |
| Sample type: | primary cells |
| Genomic View: | UCSC |
| RefEX: | Specific genes |
| FANTOM CAT: | 1, 2, 3 |
| CAGEd-oPOSSUM: | link |
| ZENBU report : | link |
| Additional information | ||||||||||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
Sample information
RNA information
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| CAGE Accession numbers | ||||||||||||||||||||||||||||||||||||||||||||||
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| Download raw sequence, BAM & CTSS | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
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| RNA-Seq Accession numbers | ||||||||||||||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
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Relative expression to median (log10)
Transcription factors with enriched expression in this sampleRanked list of transcription factor promoter expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.
Co-expression clusters with enriched expression in this sampleRanked list of co-expression cluster expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed. <br>Analyst:NA <br><br>link to dataset.<br>data
Repeat families with enriched expression in this sample<b>Summary:</b>Ranked list of repeat family expression in this sample relative tothe median expression in the FANTOM5 collection is shown. Value is log10transformed.<br><b>Analyst:</b>NA<br><br>link to dataset.<br>data
TFBS(DNA)motifs over-represented in proximal region of promoters active in this sample
JASPAR motifs<b>Summary:</b>Association of JASPAR motif to the promoter expression in thissample. Pearson's correlation between the number of TFBSs estimated byusing the position-weight matrix for each promoter and its expression isexpressed as Z-score by taking the ones based on random position-weightmatrix, and the tail probability of the normal distribution correspondingto the Z-score is taken as the resulting P-value. Lower P-value indicatesmore (non-random) association of the motif to promoter expression<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data
library id: CNhs12380
FANTOM5 phase1 novel unique motifs<b>Summary:</b>Association of the 169 novel and unique motifs discovered in FANTOM5 phase1 in this sample. Among the de-novo motifs discovered by DMF, HOMER,ChIPMunk, and ScanAll, only novel motifs are selected after comparison with known motif sets, and their clustering based on MACRO-APE resulted in169 novel and unique motifs. Their association to the promoter expression is evaluated in the same way to the JASPAR motif above<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data
library id: CNhs12380
| Novel motif | Logo | P-value |
|---|---|---|
| 1 | 1 | 0.149 |
| 10 | 10 | 0.344 |
| 100 | 100 | 0.956 |
| 101 | 101 | 0.514 |
| 102 | 102 | 0.597 |
| 103 | 103 | 0.0413 |
| 104 | 104 | 0.789 |
| 105 | 105 | 0.418 |
| 106 | 106 | 0.00651 |
| 107 | 107 | 0.0105 |
| 108 | 108 | 0.104 |
| 109 | 109 | 0.0394 |
| 11 | 11 | 0.193 |
| 110 | 110 | 0.067 |
| 111 | 111 | 0.427 |
| 112 | 112 | 0.108 |
| 113 | 113 | 0.00221 |
| 114 | 114 | 0.072 |
| 115 | 115 | 0.814 |
| 116 | 116 | 0.39 |
| 117 | 117 | 0.0826 |
| 118 | 118 | 0.0569 |
| 119 | 119 | 0.0695 |
| 12 | 12 | 0.345 |
| 120 | 120 | 0.0139 |
| 121 | 121 | 0.832 |
| 122 | 122 | 0.279 |
| 123 | 123 | 0.187 |
| 124 | 124 | 0.359 |
| 125 | 125 | 0.566 |
| 126 | 126 | 0.293 |
| 127 | 127 | 0.542 |
| 128 | 128 | 0.144 |
| 129 | 129 | 0.272 |
| 13 | 13 | 0.124 |
| 130 | 130 | 0.0733 |
| 131 | 131 | 0.483 |
| 132 | 132 | 0.202 |
| 133 | 133 | 0.274 |
| 134 | 134 | 0.21 |
| 135 | 135 | 0.487 |
| 136 | 136 | 0.229 |
| 137 | 137 | 0.742 |
| 138 | 138 | 0.398 |
| 139 | 139 | 0.331 |
| 14 | 14 | 0.93 |
| 140 | 140 | 0.714 |
| 141 | 141 | 0.967 |
| 142 | 142 | 0.381 |
| 143 | 143 | 0.856 |
| 144 | 144 | 0.661 |
| 145 | 145 | 0.201 |
| 146 | 146 | 0.43 |
| 147 | 147 | 0.378 |
| 148 | 148 | 0.457 |
| 149 | 149 | 0.103 |
| 15 | 15 | 0.156 |
| 150 | 150 | 0.174 |
| 151 | 151 | 0.309 |
| 152 | 152 | 0.0769 |
| 153 | 153 | 0.471 |
| 154 | 154 | 0.833 |
| 155 | 155 | 0.32 |
| 156 | 156 | 0.691 |
| 157 | 157 | 0.55 |
| 158 | 158 | 0.157 |
| 159 | 159 | 0.72 |
| 16 | 16 | 0.0503 |
| 160 | 160 | 0.136 |
| 161 | 161 | 0.52 |
| 162 | 162 | 0.623 |
| 163 | 163 | 0.641 |
| 164 | 164 | 0.236 |
| 165 | 165 | 0.228 |
| 166 | 166 | 0.802 |
| 167 | 167 | 0.872 |
| 168 | 168 | 0.57 |
| 169 | 169 | 0.0163 |
| 17 | 17 | 0.0534 |
| 18 | 18 | 0.246 |
| 19 | 19 | 0.0646 |
| 2 | 2 | 0.431 |
| 20 | 20 | 0.89 |
| 21 | 21 | 0.763 |
| 22 | 22 | 0.282 |
| 23 | 23 | 0.00946 |
| 24 | 24 | 0.946 |
| 25 | 25 | 0.664 |
| 26 | 26 | 0.153 |
| 27 | 27 | 0.253 |
| 28 | 28 | 0.841 |
| 29 | 29 | 0.151 |
| 3 | 3 | 0.132 |
| 30 | 30 | 0.266 |
| 31 | 31 | 0.494 |
| 32 | 32 | 0.00688 |
| 33 | 33 | 0.417 |
| 34 | 34 | 0.81 |
| 35 | 35 | 0.439 |
| 36 | 36 | 0.521 |
| 37 | 37 | 0.146 |
| 38 | 38 | 0.503 |
| 39 | 39 | 0.284 |
| 4 | 4 | 0.706 |
| 40 | 40 | 0.069 |
| 41 | 41 | 0.774 |
| 42 | 42 | 0.908 |
| 43 | 43 | 0.14 |
| 44 | 44 | 0.0449 |
| 45 | 45 | 0.276 |
| 46 | 46 | 0.118 |
| 47 | 47 | 0.746 |
| 48 | 48 | 0.451 |
| 49 | 49 | 0.365 |
| 5 | 5 | 0.258 |
| 50 | 50 | 0.618 |
| 51 | 51 | 0.388 |
| 52 | 52 | 0.3 |
| 53 | 53 | 0.491 |
| 54 | 54 | 0.739 |
| 55 | 55 | 0.0469 |
| 56 | 56 | 0.749 |
| 57 | 57 | 0.251 |
| 58 | 58 | 0.73 |
| 59 | 59 | 0.0554 |
| 6 | 6 | 0.77 |
| 60 | 60 | 0.048 |
| 61 | 61 | 0.853 |
| 62 | 62 | 0.3 |
| 63 | 63 | 0.423 |
| 64 | 64 | 0.426 |
| 65 | 65 | 0.0883 |
| 66 | 66 | 0.103 |
| 67 | 67 | 0.648 |
| 68 | 68 | 0.73 |
| 69 | 69 | 0.513 |
| 7 | 7 | 0.21 |
| 70 | 70 | 0.0116 |
| 71 | 71 | 0.105 |
| 72 | 72 | 0.326 |
| 73 | 73 | 0.126 |
| 74 | 74 | 0.849 |
| 75 | 75 | 0.157 |
| 76 | 76 | 0.79 |
| 77 | 77 | 0.032 |
| 78 | 78 | 0.314 |
| 79 | 79 | 0.143 |
| 8 | 8 | 0.218 |
| 80 | 80 | 0.831 |
| 81 | 81 | 0.438 |
| 82 | 82 | 0.0857 |
| 83 | 83 | 0.548 |
| 84 | 84 | 0.127 |
| 85 | 85 | 0.00658 |
| 86 | 86 | 0.924 |
| 87 | 87 | 0.354 |
| 88 | 88 | 0.606 |
| 89 | 89 | 0.0806 |
| 9 | 9 | 0.477 |
| 90 | 90 | 0.51 |
| 91 | 91 | 0.375 |
| 92 | 92 | 0.23 |
| 93 | 93 | 0.96 |
| 94 | 94 | 0.125 |
| 95 | 95 | 0.398 |
| 96 | 96 | 0.95 |
| 97 | 97 | 0.194 |
| 98 | 98 | 0.441 |
| 99 | 99 | 0.446 |
de novo motifs identified by HOMER in promoters active in this sample<b>Summary:</b>The result of HOMER in this sample is shown.<br><b>Analyst:</b>NA <br>
library id: CNhs12380
FANTOM5 (FF) ontology
Direct parent terms
is_a relathionship
EFO:0002091 biological replicate
FF:0000038 human chorionic membrane stem cell sample
Ancestor terms (non development)<b>Summary:</b>Connected ontology terms with is_a, part_of or located_in relationship <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source data<br>data
CL: Cell type
0000000 (cell), 0000000 (cell)
0000003 (native cell)
0000723 (somatic stem cell)
0000048 (multi fate stem cell)
0000548 (animal cell)
0002320 (connective tissue cell)
0002371 (somatic cell)
0000219 (motile cell)
0000134 (mesenchymal cell)
0000349 (extraembryonic cell)
0000255 (eukaryotic cell)
0000034 (stem cell)
0002541 (chorionic membrane mesenchymal stem cell)
UBERON: Anatomy
0000468 (multi-cellular organism)
0002384 (connective tissue)
0000479 (tissue)
0000064 (organ part)
0000062 (organ)
0000061 (anatomical structure)
0000465 (material anatomical entity)
0004923 (organ component layer)
0005631 (extraembryonic membrane)
0000467 (anatomical system)
0001062 (anatomical entity)
0000480 (anatomical group)
0000476 (acellular anatomical structure)
0000478 (extraembryonic structure)
0000158 (membranous layer)
0003124 (chorion)
0000920 (egg chorion)
FF: FANTOM5
0000102 (sample by type)
0000210 (human sample)
0000002 (in vivo cell sample)
0000101 (sample by species)
0000001 (sample)
0000038 (human chorionic membrane stem cell sample)
Ancestor terms (development)<b>Summary:</b>Connected ontology terms with develops_from, derives_from or preceded_by relationship <br><b>Analyst:</b> Hideya Kawaji <br><br>link to source data<br>data
CL:0000134 (mesenchymal cell)
