Personal tools

FF:13311-142I8: Difference between revisions

From FANTOM5_SSTAR

Jump to: navigation, search
No edit summary
No edit summary
 
(5 intermediate revisions by the same user not shown)
Line 1: Line 1:
{{f5samples
{{f5samples
|DRA_sample_Accession=CAGE@SAMD00005727
|DRA_sample_Accession=CAGE@SAMD00005727
|accession_numbers=CAGE;DRX008599;DRR009471;DRZ000896;DRZ002281
|accession_numbers=CAGE;DRX008599;DRR009471;DRZ000896;DRZ002281;DRZ012246;DRZ013631
|ancestors_in_anatomy_facet=
|ancestors_in_anatomy_facet=
|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000988,CL:0000548,CL:0000763,CL:0002371,CL:0000766,CL:0000219,CL:0000325,CL:0000473,CL:0000234,CL:0000738,CL:0000255,CL:0000235
|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000988,CL:0000548,CL:0000763,CL:0002371,CL:0000766,CL:0000219,CL:0000325,CL:0000473,CL:0000234,CL:0000738,CL:0000255,CL:0000235
Line 43: Line 43:
|fonse_treatment_closure=
|fonse_treatment_closure=
|has_quality=
|has_quality=
|hg19bam=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.timecourse.hCAGE/Monocyte-derived%2520macrophages%2520response%2520to%2520udorn%2520influenza%2520infection%252c%252000hr00min%252c%2520donor4%2520%2528227_121%253aUd_0h%2529.CNhs13639.13311-142I8.hg19.nobarcode.bam
|hg19ctss=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.timecourse.hCAGE/Monocyte-derived%2520macrophages%2520response%2520to%2520udorn%2520influenza%2520infection%252c%252000hr00min%252c%2520donor4%2520%2528227_121%253aUd_0h%2529.CNhs13639.13311-142I8.hg19.ctss.bed.gz
|hg19fasta=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.timecourse.hCAGE/Monocyte-derived%2520macrophages%2520response%2520to%2520udorn%2520influenza%2520infection%252c%252000hr00min%252c%2520donor4%2520%2528227_121%253aUd_0h%2529.CNhs13639.13311-142I8.hg19.nobarcode.rdna.fa.gz
|hg38bam=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.timecourse.hCAGE/Monocyte-derived%2520macrophages%2520response%2520to%2520udorn%2520influenza%2520infection%252c%252000hr00min%252c%2520donor4%2520%2528227_121%253aUd_0h%2529.CNhs13639.13311-142I8.hg38.nobarcode.bam
|hg38ctss=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.timecourse.hCAGE/Monocyte-derived%2520macrophages%2520response%2520to%2520udorn%2520influenza%2520infection%252c%252000hr00min%252c%2520donor4%2520%2528227_121%253aUd_0h%2529.CNhs13639.13311-142I8.hg38.nobarcode.ctss.bed.gz
|id=FF:13311-142I8
|id=FF:13311-142I8
|is_a=EFO:0002091;;FF:0011215
|is_a=EFO:0002091;;FF:0011215
Line 48: Line 53:
|library_id=CNhs13639
|library_id=CNhs13639
|library_id_phase_based=2:CNhs13639
|library_id_phase_based=2:CNhs13639
|microRNAs=
|microRNAs_nn=
|microRNAs_nonnovel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer/#/human#cage;sample;13311
|microRNAs_novel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer_novel/#/human#cage;sample;13311
|name=Monocyte-derived macrophages response to udorn influenza infection
|name=Monocyte-derived macrophages response to udorn influenza infection
|namespace=
|namespace=
Line 55: Line 64:
|profile_rnaseq=
|profile_rnaseq=
|profile_srnaseq=
|profile_srnaseq=
|refex=http://refex.dbcls.jp/genelist.php?lang
|repeat_enrich_byfamily=0,0,0.567566904253485,0,0,0,0,0.814348266960493,0,0.922678153959787,0.204929587946497,0,0,0,0,0,0,0,0,0,0,0,0,0,0.821343286698451,0,0,0,0,0,-0.0979578962680575,0,0,-0.132956589778862,0,0,0,0,0,0,0,0,0,0,0,0,0.612581255824924,0,0,0,0,0,0,0,0,-0.0242150211128343,0,0,0,0.492528432668985,0,-0.0479813602647654,0,0.39553607142638,0,0,-0.097343627213097,0,0,0,0,0,0,0,0,0.492528432668985,0,0,0,0,0.717394096417105,0,0,0,0,0.246264216334492,0,0,0,0,0,-0.552571649267773,0,0,0,0.0714042841044568,0.387558323387072,0,0,0.246264216334492,0,0.619358745179398,-0.138477200800895,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,-0.096373593922461,0,0,0,0.888640926973245,1.1188528726967,0,0,0,0,0,0
|repeat_enrich_byfamily=0,0,0.567566904253485,0,0,0,0,0.814348266960493,0,0.922678153959787,0.204929587946497,0,0,0,0,0,0,0,0,0,0,0,0,0,0.821343286698451,0,0,0,0,0,-0.0979578962680575,0,0,-0.132956589778862,0,0,0,0,0,0,0,0,0,0,0,0,0.612581255824924,0,0,0,0,0,0,0,0,-0.0242150211128343,0,0,0,0.492528432668985,0,-0.0479813602647654,0,0.39553607142638,0,0,-0.097343627213097,0,0,0,0,0,0,0,0,0.492528432668985,0,0,0,0,0.717394096417105,0,0,0,0,0.246264216334492,0,0,0,0,0,-0.552571649267773,0,0,0,0.0714042841044568,0.387558323387072,0,0,0.246264216334492,0,0.619358745179398,-0.138477200800895,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,-0.096373593922461,0,0,0,0.888640926973245,1.1188528726967,0,0,0,0,0,0
|repeat_enrich_byname=0,0,0,0,0.619358745179398,0,0,0.492528432668985,0.492528432668985,0,0,0,0,0,0,0,0.245349557383421,0,-0.474086218752008,0.349013290145514,0,0.492528432668985,-0.427279086909571,0,0.492528432668985,0,0,1.19751145216588,0,0,1.19751145216588,0,-0.128119866952565,0,-0.0504125515893149,0,0,0,0,-0.0186252810838506,-0.305472230898407,0,0.258146292436211,-0.0683442610773682,0,0,0,0,-0.270240669334324,0,-0.120879483793741,-0.0827201683234173,-0.221611588102807,-0.294973891600967,-0.055712496781182,0,0,0,-0.54845326657348,-0.525850480723903,0,0,-0.121779851751874,0.0649145977738335,0,0,-0.391044581551635,0,0.160897584155868,0.356093214160793,0,0.0859629966697298,0,0,0,0,0,0,0,0,0,0,0,-0.0574934668214365,-0.326988596678969,0,0,0,0,-0.0412805486222463,0,0,0.601380141090312,-0.0121769479880562,-0.13948678231003,-0.431666747977814,0,0.562418980161527,0.310767016668763,0.15044888499383,-0.160679212319595,-0.147401849371139,-0.189981719549847,0,-0.119212982053964,-0.786272629114012,0.0111916914344879,0.0413904645025329,-0.190764456496112,-0.366599801115664,-0.424094340078974,0,0,-0.0775089264793031,-0.76514378723743,0,-0.0840419085271129,0.227279381940331,-0.136338834734324,0.0857884288632085,0.401522123209093,-0.304964000972736,-0.0949459645544126,-0.0395325284566706,0.0350919797723908,-0.0849099365851455,-0.4215723249037,0,0,0,-0.0420118584407915,-0.0685180106902176,0.581685278987199,-0.0746486299811178,0.233416634606124,-0.0683442610773682,0,0.0414201859192142,-0.347055336733966,0,0,-0.578777230871412,0,0,0,0,0,-0.161498881127924,-0.0469637103611809,0.48453853486156,0,-0.0158122390450736,0,-0.297286080352587,0,-0.35141624072914,0.0744779871695168,-0.298074152361292,0.19989462807275,-0.0236035569069695,0.11135422111619,0.168146838223327,-0.0611956657405334,-0.422394805391737,0.43408160585716,0.467039518390147,-0.21585221908134,-0.143492669913893,-0.296411432121241,-0.124307696593413,-0.0881268324752877,0,-0.391016317849395,-0.186969698952539,0.00591238357179047,-0.583529904229572,0,-0.116679268026282,0,-0.513100331823187,0,0.0947001663800084,-0.54043375147324,0.278104721836419,0.330894654933414,0,-0.127195581674951,-0.788130937773974,0,0,-0.0393760767512765,0,-0.150367083334639,-0.697695966512583,0.634379768867403,-0.138989456679195,0,-0.790080158389657,0,0,-0.231888783494457,0.481918058652716,0,0.149364130414258,0.588308537952482,0.593295410970583,0.601423022982171,1.06226966777359,0,-0.645700337992725,-0.0970426649908326,0,-0.60592806381803,-0.0636048451378017,-0.619783323958633,0.611482365684685,-0.0458516011949309,0.458944094799227,0,0,-0.177527765965176,0,0.115776051691238,0,0.492528432668985,0.108815751609728,0,0,0,0,0.163431357650788,0,0,0,0,0,0,0,0.628337233536682,-0.354833330216448,0,0.0262817985917699,0,0,0,0,0,0,0,0,-0.291842864739037,-0.11956564527154,-0.12301741567642,0,0,0,0,0.50167069386363,0.289291870574262,0,-0.131862706497632,0,0.358697048208553,0,0,-0.0861409897892114,0,0,0,0,-0.057730457053664,1.10308905238619,0,0,0,-0.27695440160179,0,0,0,0,-0.58147718200245,0,0,1.43999314465588,0,-0.416501152731539,-0.0815818795468414,0,-0.112801442248814,-0.282544512712406,-0.112108888482584,0,0,0.231181300879098,0,0,0.0263253461403474,0,0,-0.0209247759461169,0,0,0,0,0.492528432668985,0,-0.214314512399756,0,0,0,0,0,0.974666297046879,0,0,0,0,0,0.340441079131884,0.625170039758594,0,0,0.0832789890535484,0,0,0,0,0.872402180295907,-0.0767497628057335,0,0,0,0,0,0.492528432668985,0,0,0.590843728110353,0,0,0.492528432668985,0,0,0.39553607142638,0,0,0,1.13513380850697,0.409859175892995,0,0,0.587446574977926,0,0,0,0,0,0,0,0,0,0,0,0,0,-0.123319086035448,1.00165824247546,0,0,0,0,0,0,0,0.922678153959787,0,0,0,0,1.70801232575642,0,0,0,-0.104796384789156,0,0.814348266960493,0,0,0,0,0,0,0,0,0,0,0.86480870717144,0,0,0,0,0,0,0,0,0,0,-0.395605953441546,0,0,-0.0479978845273854,0,0,-0.232628352633041,0,0,0,0,0,0,0.214923792305966,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,-0.0348580438050884,0,0,0,0,0,0,0,-0.0979578962680575,0,0,-0.0920328098005262,0,0,0,0,0,0,0.070720207551843,-0.283220399823148,-0.0447265322954938,0,0,0,-0.054385572482455,0.492528432668985,0,-0.134609515403383,0,-0.0667773874189013,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.821343286698451,0,0,0,0,0,0,0,0,0,0,0,0,0.246264216334492,0,0,0,0,0,0.791101401794273,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,-0.0340113632754165,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.412509964400347,0,0,0,1.37742244889783,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.792082585215483,0,0,0,0,0,0,0,0,0,0,0,0,0,0.444306357429931,0,0.633017464187078,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,-0.0579756098467269,0,0,0,0,-0.0476371106609188,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,-0.253610608288505,0,0,0.528001718009037,0,0,0,0,0,0,0,0,0,0,0,0,0.656073917266978,0,0,0,0,0,0,0,0,0,0,-0.0484300422256687,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.856208234916209,1.1188528726967,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,-0.354724076107398,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.402707431213044,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,-0.620396418749604,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.531134833886795,0,0,0,0,0.717394096417105,0,0,0,0,0,-0.192747187844922,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.246264216334492,0,0.492528432668985,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.410330489966976,0,0,0,0,0,0,0,-0.122695996997001,0,0,0,0,0,0,0,0,0,0,0,0.492528432668985,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.492528432668985,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,-0.0237397835175619,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,-0.0317165860483832,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.412786434004007,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,-0.097343627213097,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,-0.132956589778862,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.308759065686966,0,0,0,0,0,0,0,0,0,0,0.205014124806685,0,0,0,0,0.717394096417105,0,0,0,0,0,0,0,0,0,0,0,0,0.492528432668985,-0.103597087858274,0,0.246264216334492,1.41115949135502,0,1.16433189277162,0.0283374312562996,0,0,0,0,0,-0.0220203204819844,0,0,0,0,0,0,0,0,0,0,-0.0400762477245316,0,0,-0.137338502423895,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.21245633734602,0,0,0.0954537441469707,0,0,0.80432779662775,0,0,0,0,0,-0.174992895090299,-0.101096390058807,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,-0.0568589461625992,0.792794032179026,0,0.338557842066681,0,0,0.48237555122524,0,0,0,-0.0959594073735869
|repeat_enrich_byname=0,0,0,0,0.619358745179398,0,0,0.492528432668985,0.492528432668985,0,0,0,0,0,0,0,0.245349557383421,0,-0.474086218752008,0.349013290145514,0,0.492528432668985,-0.427279086909571,0,0.492528432668985,0,0,1.19751145216588,0,0,1.19751145216588,0,-0.128119866952565,0,-0.0504125515893149,0,0,0,0,-0.0186252810838506,-0.305472230898407,0,0.258146292436211,-0.0683442610773682,0,0,0,0,-0.270240669334324,0,-0.120879483793741,-0.0827201683234173,-0.221611588102807,-0.294973891600967,-0.055712496781182,0,0,0,-0.54845326657348,-0.525850480723903,0,0,-0.121779851751874,0.0649145977738335,0,0,-0.391044581551635,0,0.160897584155868,0.356093214160793,0,0.0859629966697298,0,0,0,0,0,0,0,0,0,0,0,-0.0574934668214365,-0.326988596678969,0,0,0,0,-0.0412805486222463,0,0,0.601380141090312,-0.0121769479880562,-0.13948678231003,-0.431666747977814,0,0.562418980161527,0.310767016668763,0.15044888499383,-0.160679212319595,-0.147401849371139,-0.189981719549847,0,-0.119212982053964,-0.786272629114012,0.0111916914344879,0.0413904645025329,-0.190764456496112,-0.366599801115664,-0.424094340078974,0,0,-0.0775089264793031,-0.76514378723743,0,-0.0840419085271129,0.227279381940331,-0.136338834734324,0.0857884288632085,0.401522123209093,-0.304964000972736,-0.0949459645544126,-0.0395325284566706,0.0350919797723908,-0.0849099365851455,-0.4215723249037,0,0,0,-0.0420118584407915,-0.0685180106902176,0.581685278987199,-0.0746486299811178,0.233416634606124,-0.0683442610773682,0,0.0414201859192142,-0.347055336733966,0,0,-0.578777230871412,0,0,0,0,0,-0.161498881127924,-0.0469637103611809,0.48453853486156,0,-0.0158122390450736,0,-0.297286080352587,0,-0.35141624072914,0.0744779871695168,-0.298074152361292,0.19989462807275,-0.0236035569069695,0.11135422111619,0.168146838223327,-0.0611956657405334,-0.422394805391737,0.43408160585716,0.467039518390147,-0.21585221908134,-0.143492669913893,-0.296411432121241,-0.124307696593413,-0.0881268324752877,0,-0.391016317849395,-0.186969698952539,0.00591238357179047,-0.583529904229572,0,-0.116679268026282,0,-0.513100331823187,0,0.0947001663800084,-0.54043375147324,0.278104721836419,0.330894654933414,0,-0.127195581674951,-0.788130937773974,0,0,-0.0393760767512765,0,-0.150367083334639,-0.697695966512583,0.634379768867403,-0.138989456679195,0,-0.790080158389657,0,0,-0.231888783494457,0.481918058652716,0,0.149364130414258,0.588308537952482,0.593295410970583,0.601423022982171,1.06226966777359,0,-0.645700337992725,-0.0970426649908326,0,-0.60592806381803,-0.0636048451378017,-0.619783323958633,0.611482365684685,-0.0458516011949309,0.458944094799227,0,0,-0.177527765965176,0,0.115776051691238,0,0.492528432668985,0.108815751609728,0,0,0,0,0.163431357650788,0,0,0,0,0,0,0,0.628337233536682,-0.354833330216448,0,0.0262817985917699,0,0,0,0,0,0,0,0,-0.291842864739037,-0.11956564527154,-0.12301741567642,0,0,0,0,0.50167069386363,0.289291870574262,0,-0.131862706497632,0,0.358697048208553,0,0,-0.0861409897892114,0,0,0,0,-0.057730457053664,1.10308905238619,0,0,0,-0.27695440160179,0,0,0,0,-0.58147718200245,0,0,1.43999314465588,0,-0.416501152731539,-0.0815818795468414,0,-0.112801442248814,-0.282544512712406,-0.112108888482584,0,0,0.231181300879098,0,0,0.0263253461403474,0,0,-0.0209247759461169,0,0,0,0,0.492528432668985,0,-0.214314512399756,0,0,0,0,0,0.974666297046879,0,0,0,0,0,0.340441079131884,0.625170039758594,0,0,0.0832789890535484,0,0,0,0,0.872402180295907,-0.0767497628057335,0,0,0,0,0,0.492528432668985,0,0,0.590843728110353,0,0,0.492528432668985,0,0,0.39553607142638,0,0,0,1.13513380850697,0.409859175892995,0,0,0.587446574977926,0,0,0,0,0,0,0,0,0,0,0,0,0,-0.123319086035448,1.00165824247546,0,0,0,0,0,0,0,0.922678153959787,0,0,0,0,1.70801232575642,0,0,0,-0.104796384789156,0,0.814348266960493,0,0,0,0,0,0,0,0,0,0,0.86480870717144,0,0,0,0,0,0,0,0,0,0,-0.395605953441546,0,0,-0.0479978845273854,0,0,-0.232628352633041,0,0,0,0,0,0,0.214923792305966,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,-0.0348580438050884,0,0,0,0,0,0,0,-0.0979578962680575,0,0,-0.0920328098005262,0,0,0,0,0,0,0.070720207551843,-0.283220399823148,-0.0447265322954938,0,0,0,-0.054385572482455,0.492528432668985,0,-0.134609515403383,0,-0.0667773874189013,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.821343286698451,0,0,0,0,0,0,0,0,0,0,0,0,0.246264216334492,0,0,0,0,0,0.791101401794273,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,-0.0340113632754165,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.412509964400347,0,0,0,1.37742244889783,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.792082585215483,0,0,0,0,0,0,0,0,0,0,0,0,0,0.444306357429931,0,0.633017464187078,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,-0.0579756098467269,0,0,0,0,-0.0476371106609188,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,-0.253610608288505,0,0,0.528001718009037,0,0,0,0,0,0,0,0,0,0,0,0,0.656073917266978,0,0,0,0,0,0,0,0,0,0,-0.0484300422256687,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.856208234916209,1.1188528726967,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,-0.354724076107398,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.402707431213044,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,-0.620396418749604,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.531134833886795,0,0,0,0,0.717394096417105,0,0,0,0,0,-0.192747187844922,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.246264216334492,0,0.492528432668985,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.410330489966976,0,0,0,0,0,0,0,-0.122695996997001,0,0,0,0,0,0,0,0,0,0,0,0.492528432668985,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.492528432668985,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,-0.0237397835175619,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,-0.0317165860483832,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.412786434004007,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,-0.097343627213097,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,-0.132956589778862,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.308759065686966,0,0,0,0,0,0,0,0,0,0,0.205014124806685,0,0,0,0,0.717394096417105,0,0,0,0,0,0,0,0,0,0,0,0,0.492528432668985,-0.103597087858274,0,0.246264216334492,1.41115949135502,0,1.16433189277162,0.0283374312562996,0,0,0,0,0,-0.0220203204819844,0,0,0,0,0,0,0,0,0,0,-0.0400762477245316,0,0,-0.137338502423895,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.21245633734602,0,0,0.0954537441469707,0,0,0.80432779662775,0,0,0,0,0,-0.174992895090299,-0.101096390058807,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,-0.0568589461625992,0.792794032179026,0,0.338557842066681,0,0,0.48237555122524,0,0,0,-0.0959594073735869
Line 94: Line 104:
|top_motifs=FOXD3:3.15540205872;ZBTB16:2.59706452834;NR6A1:2.36501794405;NKX2-2,8:2.11143991394;IKZF2:2.08071453754;RXR{A,B,G}_{NR1H2,PPAR}dimers:1.93450736268;PAX4:1.93422413796;SREBF1,2:1.9286666472;HMGA1,2:1.8161173736;CDX1,2,4:1.74922781436;ARID5B:1.70458148137;DMAP1_NCOR{1,2}_SMARC:1.65312564102;RXRA_VDR{dimer}:1.57428391593;EN1,2:1.46759089499;UFEwm:1.33089315246;HMX1:1.31540137812;TLX2:1.2515901984;OCT4_SOX2{dimer}:1.22836677869;FOXP3:1.22538714676;NKX6-1,2:1.14511195029;ESR1:1.10344758304;NKX3-1:0.979864103927;NANOG{mouse}:0.945486400086;SPIB:0.919633722711;GATA4:0.914230163058;ALX1:0.840551540736;SPI1:0.820262168825;GLI1..3:0.819501177332;NKX3-2:0.760721058268;NFE2L1:0.747280076477;PAX1,9:0.731105398885;IRF7:0.709660417045;NFIL3:0.666947694843;ESRRA:0.651123737757;IRF1,2:0.608918951302;LHX3,4:0.5964000509;PITX1..3:0.579457445888;KLF4:0.561551354573;MYOD1:0.526692736353;NFE2L2:0.51723339662;HNF4A_NR2F1,2:0.486780925718;PAX8:0.480514340486;SPZ1:0.432984689678;HAND1,2:0.393681710363;POU1F1:0.381983045175;TFAP4:0.292631152138;SMAD1..7,9:0.289712830303;EVI1:0.269734880536;TFCP2:0.258549673906;ETS1,2:0.250529846461;HLF:0.241738659433;PDX1:0.237778166487;TGIF1:0.237178455651;NR1H4:0.229008835468;RUNX1..3:0.19805500134;POU5F1:0.185533745597;HOX{A4,D4}:0.182362164103;PAX2:0.169553483872;POU3F1..4:0.165997255059;CEBPA,B_DDIT3:0.141940675351;TOPORS:0.125641807328;FOX{F1,F2,J1}:0.104300272948;FOXO1,3,4:0.094712409722;PRDM1:0.0763254610231;HOXA9_MEIS1:0.0605601931529;FOXM1:0.0541865158484;EBF1:0.0523184578789;TEF:0.00658753393203;NFKB1_REL_RELA:-0.0090494139725;STAT2,4,6:-0.0359037641942;AR:-0.0420147320858;NKX2-3_NKX2-5:-0.0437698361025;FOXQ1:-0.0556956816051;EP300:-0.0609715812893;TBP:-0.0984581111006;PPARG:-0.109002602661;ONECUT1,2:-0.109200142648;AIRE:-0.111208747014;HES1:-0.119602748668;FOXP1:-0.122298808649;GZF1:-0.181112618571;RORA:-0.182294293557;FOSL2:-0.186491608478;TAL1_TCF{3,4,12}:-0.198206975988;ZEB1:-0.205746258076;DBP:-0.207378519883;NFE2:-0.212729682815;ELF1,2,4:-0.240956855792;CUX2:-0.29691399765;BACH2:-0.29960390264;FOXA2:-0.300173392631;ZNF423:-0.322028280466;MYFfamily:-0.328651046955;NR5A1,2:-0.33243644979;HOX{A6,A7,B6,B7}:-0.336893963159;BPTF:-0.350276914382;LMO2:-0.350484300584;ZNF384:-0.359731352735;FOXL1:-0.363024110366;FOS_FOS{B,L1}_JUN{B,D}:-0.365229491603;MAFB:-0.377099385004;ALX4:-0.377694163454;PAX6:-0.397636571037;POU6F1:-0.400312029129;SRF:-0.41665542129;GATA6:-0.437722469907;MTF1:-0.453974825382;ADNP_IRX_SIX_ZHX:-0.460203420912;RXR{A,B,G}:-0.462635268778;RREB1:-0.466750131399;HOX{A5,B5}:-0.468127192836;HNF1A:-0.468777554778;IKZF1:-0.470700131022;ATF5_CREB3:-0.473630869739;REST:-0.514422984715;NHLH1,2:-0.524149365018;HBP1_HMGB_SSRP1_UBTF:-0.526325490717;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:-0.540856191639;GFI1B:-0.542382740241;VSX1,2:-0.545658257061;SNAI1..3:-0.57108191452;MYB:-0.579858331889;ATF2:-0.582415009164;ATF4:-0.608655743219;STAT5{A,B}:-0.617782344341;PRRX1,2:-0.619839549428;FOX{D1,D2}:-0.648777018237;CDC5L:-0.683456945098;RFX2..5_RFXANK_RFXAP:-0.698544655744;CRX:-0.713410238232;ATF6:-0.753456972163;SOX{8,9,10}:-0.768516365341;ZBTB6:-0.808922976313;PAX5:-0.818903207683;NFIX:-0.864246774707;YY1:-0.864498849358;GCM1,2:-0.870642539937;SOX5:-0.890881933655;FOXN1:-0.892675212047;SOX17:-0.932633119967;ZIC1..3:-0.951784465368;NR3C1:-0.956875833945;T:-1.00011208678;MEF2{A,B,C,D}:-1.00089092347;HSF1,2:-1.00464842933;TEAD1:-1.01724848237;MYBL2:-1.02425289935;NKX2-1,4:-1.03775992147;ZNF238:-1.11831103177;E2F1..5:-1.17241819235;AHR_ARNT_ARNT2:-1.19446195514;STAT1,3:-1.21396802565;bHLH_family:-1.21506579038;GTF2I:-1.2705976964;ZNF148:-1.27431534429;HIC1:-1.28220167228;TBX4,5:-1.33818324989;BREu{core}:-1.34179068136;ZFP161:-1.4016842464;TLX1..3_NFIC{dimer}:-1.42161321802;TFAP2{A,C}:-1.46175410077;EGR1..3:-1.46254035388;MED-1{core}:-1.46522126216;MTE{core}:-1.49845247385;GFI1:-1.57604238075;XBP1:-1.57746382592;MZF1:-1.58096536025;TFAP2B:-1.58225674155;POU2F1..3:-1.58784022244;PAX3,7:-1.59048743087;ZNF143:-1.61290008512;NFATC1..3:-1.61835339124;SOX2:-1.62706030216;NRF1:-1.63552615371;RBPJ:-1.63831406097;GTF2A1,2:-1.67227227884;TP53:-1.68582284124;JUN:-1.74023353246;RFX1:-1.74684877167;HIF1A:-1.75657643301;NFY{A,B,C}:-1.79985398119;FOX{I1,J2}:-1.82432048203;MAZ:-1.84764967571;XCPE1{core}:-1.88599500119;ELK1,4_GABP{A,B1}:-1.92048176147;PATZ1:-1.96442932714;TFDP1:-2.07031445921;LEF1_TCF7_TCF7L1,2:-2.07379672276;CREB1:-2.1373772407;NANOG:-2.22528000316;SP1:-2.25623625337;PBX1:-2.5327239429
|top_motifs=FOXD3:3.15540205872;ZBTB16:2.59706452834;NR6A1:2.36501794405;NKX2-2,8:2.11143991394;IKZF2:2.08071453754;RXR{A,B,G}_{NR1H2,PPAR}dimers:1.93450736268;PAX4:1.93422413796;SREBF1,2:1.9286666472;HMGA1,2:1.8161173736;CDX1,2,4:1.74922781436;ARID5B:1.70458148137;DMAP1_NCOR{1,2}_SMARC:1.65312564102;RXRA_VDR{dimer}:1.57428391593;EN1,2:1.46759089499;UFEwm:1.33089315246;HMX1:1.31540137812;TLX2:1.2515901984;OCT4_SOX2{dimer}:1.22836677869;FOXP3:1.22538714676;NKX6-1,2:1.14511195029;ESR1:1.10344758304;NKX3-1:0.979864103927;NANOG{mouse}:0.945486400086;SPIB:0.919633722711;GATA4:0.914230163058;ALX1:0.840551540736;SPI1:0.820262168825;GLI1..3:0.819501177332;NKX3-2:0.760721058268;NFE2L1:0.747280076477;PAX1,9:0.731105398885;IRF7:0.709660417045;NFIL3:0.666947694843;ESRRA:0.651123737757;IRF1,2:0.608918951302;LHX3,4:0.5964000509;PITX1..3:0.579457445888;KLF4:0.561551354573;MYOD1:0.526692736353;NFE2L2:0.51723339662;HNF4A_NR2F1,2:0.486780925718;PAX8:0.480514340486;SPZ1:0.432984689678;HAND1,2:0.393681710363;POU1F1:0.381983045175;TFAP4:0.292631152138;SMAD1..7,9:0.289712830303;EVI1:0.269734880536;TFCP2:0.258549673906;ETS1,2:0.250529846461;HLF:0.241738659433;PDX1:0.237778166487;TGIF1:0.237178455651;NR1H4:0.229008835468;RUNX1..3:0.19805500134;POU5F1:0.185533745597;HOX{A4,D4}:0.182362164103;PAX2:0.169553483872;POU3F1..4:0.165997255059;CEBPA,B_DDIT3:0.141940675351;TOPORS:0.125641807328;FOX{F1,F2,J1}:0.104300272948;FOXO1,3,4:0.094712409722;PRDM1:0.0763254610231;HOXA9_MEIS1:0.0605601931529;FOXM1:0.0541865158484;EBF1:0.0523184578789;TEF:0.00658753393203;NFKB1_REL_RELA:-0.0090494139725;STAT2,4,6:-0.0359037641942;AR:-0.0420147320858;NKX2-3_NKX2-5:-0.0437698361025;FOXQ1:-0.0556956816051;EP300:-0.0609715812893;TBP:-0.0984581111006;PPARG:-0.109002602661;ONECUT1,2:-0.109200142648;AIRE:-0.111208747014;HES1:-0.119602748668;FOXP1:-0.122298808649;GZF1:-0.181112618571;RORA:-0.182294293557;FOSL2:-0.186491608478;TAL1_TCF{3,4,12}:-0.198206975988;ZEB1:-0.205746258076;DBP:-0.207378519883;NFE2:-0.212729682815;ELF1,2,4:-0.240956855792;CUX2:-0.29691399765;BACH2:-0.29960390264;FOXA2:-0.300173392631;ZNF423:-0.322028280466;MYFfamily:-0.328651046955;NR5A1,2:-0.33243644979;HOX{A6,A7,B6,B7}:-0.336893963159;BPTF:-0.350276914382;LMO2:-0.350484300584;ZNF384:-0.359731352735;FOXL1:-0.363024110366;FOS_FOS{B,L1}_JUN{B,D}:-0.365229491603;MAFB:-0.377099385004;ALX4:-0.377694163454;PAX6:-0.397636571037;POU6F1:-0.400312029129;SRF:-0.41665542129;GATA6:-0.437722469907;MTF1:-0.453974825382;ADNP_IRX_SIX_ZHX:-0.460203420912;RXR{A,B,G}:-0.462635268778;RREB1:-0.466750131399;HOX{A5,B5}:-0.468127192836;HNF1A:-0.468777554778;IKZF1:-0.470700131022;ATF5_CREB3:-0.473630869739;REST:-0.514422984715;NHLH1,2:-0.524149365018;HBP1_HMGB_SSRP1_UBTF:-0.526325490717;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:-0.540856191639;GFI1B:-0.542382740241;VSX1,2:-0.545658257061;SNAI1..3:-0.57108191452;MYB:-0.579858331889;ATF2:-0.582415009164;ATF4:-0.608655743219;STAT5{A,B}:-0.617782344341;PRRX1,2:-0.619839549428;FOX{D1,D2}:-0.648777018237;CDC5L:-0.683456945098;RFX2..5_RFXANK_RFXAP:-0.698544655744;CRX:-0.713410238232;ATF6:-0.753456972163;SOX{8,9,10}:-0.768516365341;ZBTB6:-0.808922976313;PAX5:-0.818903207683;NFIX:-0.864246774707;YY1:-0.864498849358;GCM1,2:-0.870642539937;SOX5:-0.890881933655;FOXN1:-0.892675212047;SOX17:-0.932633119967;ZIC1..3:-0.951784465368;NR3C1:-0.956875833945;T:-1.00011208678;MEF2{A,B,C,D}:-1.00089092347;HSF1,2:-1.00464842933;TEAD1:-1.01724848237;MYBL2:-1.02425289935;NKX2-1,4:-1.03775992147;ZNF238:-1.11831103177;E2F1..5:-1.17241819235;AHR_ARNT_ARNT2:-1.19446195514;STAT1,3:-1.21396802565;bHLH_family:-1.21506579038;GTF2I:-1.2705976964;ZNF148:-1.27431534429;HIC1:-1.28220167228;TBX4,5:-1.33818324989;BREu{core}:-1.34179068136;ZFP161:-1.4016842464;TLX1..3_NFIC{dimer}:-1.42161321802;TFAP2{A,C}:-1.46175410077;EGR1..3:-1.46254035388;MED-1{core}:-1.46522126216;MTE{core}:-1.49845247385;GFI1:-1.57604238075;XBP1:-1.57746382592;MZF1:-1.58096536025;TFAP2B:-1.58225674155;POU2F1..3:-1.58784022244;PAX3,7:-1.59048743087;ZNF143:-1.61290008512;NFATC1..3:-1.61835339124;SOX2:-1.62706030216;NRF1:-1.63552615371;RBPJ:-1.63831406097;GTF2A1,2:-1.67227227884;TP53:-1.68582284124;JUN:-1.74023353246;RFX1:-1.74684877167;HIF1A:-1.75657643301;NFY{A,B,C}:-1.79985398119;FOX{I1,J2}:-1.82432048203;MAZ:-1.84764967571;XCPE1{core}:-1.88599500119;ELK1,4_GABP{A,B1}:-1.92048176147;PATZ1:-1.96442932714;TFDP1:-2.07031445921;LEF1_TCF7_TCF7L1,2:-2.07379672276;CREB1:-2.1373772407;NANOG:-2.22528000316;SP1:-2.25623625337;PBX1:-2.5327239429
|xref=
|xref=
|zenbu_report=https://fantom.gsc.riken.jp/zenbu/reports/#miRNA_expression_atlas_human;search_select_hide=table111:FF:13311-142I8;search_select_hide=table117:FF:13311-142I8
}}
}}

Latest revision as of 18:56, 4 June 2020

Name:Monocyte-derived macrophages response to udorn influenza infection
Species:Human (Homo sapiens)
Library ID:CNhs13639
Sample type:time courses
Genomic View: UCSC
RefEX:Specific genes
FANTOM CAT:1, 2, 3, 4, 5, 6, 7, 8, 9, 10
CAGEd-oPOSSUM:link
ZENBU report :link
Additional information
Sample information
strainNA
tissueblood
dev stageNA
sexn/a
ageadult
cell typeHMDM
cell linePrimary
companyNA
collaborationBaillie/Tomoiu/Fisher/Hume
External link for information[{{{sample_info_link}}} {{{sample_info_link}}}]
RNA information
lot numberNA
catalog numberNA
sample typetotal RNA
extraction protocol (Details)OP-RNA-extraction-totalRNA-miRNeasy_Mini-v1.0

CAGE Accession numbers
MethodSample accession id
CAGE  SAMD00005727
Library accession numbers

Library idMethodExp. accession idRun accession id
CNhs13639 CAGE DRX008599 DRR009471
Accession ID Hg19

Library idBAMCTSS
CNhs13639 DRZ000896 DRZ002281
Accession ID Hg38

Library idBAMCTSS
CNhs13639 DRZ012246 DRZ013631
Download raw sequence, BAM & CTSS
Hg19
FastaBAMCTSS
downloaddownloaddonwload
Hg38
BAMCTSS
downloaddonwload


Relative expression to median (log10)

Transcription factors with enriched expression in this sampleRanked list of transcription factor promoter expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.



Co-expression clusters with enriched expression in this sampleRanked list of co-expression cluster expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed. <br>Analyst:NA <br><br>link to dataset.<br>data

Coexpression clusterscore
C0-CD14-Eosinophils-Neutrophils-Basophils-CD34-immature-Peripheral0
C1-testis-epididymis-embryonic-medulla-pituitary-trachea-caudate0
C10-occipital-temporal-parietal-brain-duodenum-Neurons-Neural0
C100-rhabdomyosarcoma-gastric-pineal-Wilms-cervical-mesodermal-endometrial0
C101-small-cerebellum-maxillary-colon-parietal-epididymis-merkel0
C102-neuroblastoma-testicular-pituitary-carcinosarcoma-rectum-acantholytic-iPS0
C103-CD4-CD8-Natural-Peripheral-Whole-Neutrophils-Basophils0
C104-Mast-Basophils-immature-CD14-CD34-eye-Natural0
C105-heart-skeletal-occipital-hippocampus-acute-Sebocyte-penis0.441
C106-Hep2-epitheloid-placenta-cervical-rectal-anaplastic-glassy0
C107-Neutrophils-CD14-Eosinophils-Monocytederived-Whole-Peripheral-blood0.366
C108-breast-hepatoblastoma-MCF7-parotid-salivary-submaxillary-prostate0
C109-Reticulocytes-non-acute-Hodgkin-Burkitt-retinoblastoma-lymphoma-0.235
C11-cerebellum-medulla-pons-parietal-occipital-middle-medial0
C110-leukemia-chronic-Eosinophils-acute-Whole-CD34-Lymphatic0
C111-medulla-lung-trachea-testis-caudate-epididymis-throat0
C112-gastric-pancreas-temporal-duodenum-small-extraskeletal-adrenal0
C113-thyroid-throat-lung-lymph-small-colon-trachea0
C114-teratocarcinoma-medulloblastoma-carcinosarcoma-iPS-anaplastic-acute-neuroblastoma0
C115-pituitary-Neural-caudate-putamen-amygdala-medulla-hippocampus0
C116-myeloma-xeroderma-tonsil-CD19-spleen-lymph-trachea0
C117-serous-clear-kidney-neuroectodermal-mesothelioma-endometrial-Intestinal0
C118-cerebellum-parietal-occipital-medial-middle-frontal-insula0
C119-CD4-CD8-Natural-Neutrophils-CD14-Peripheral-CD190
C12-Mast-Basophils-immature-chorionic-mature-CD14-Eosinophils0
C120-immature-salivary-tongue-skin-cervical-CD14-CD340
C121-NK-Natural-CD8-CD4-anaplastic-chronic-B0
C122-chronic-Reticulocytes-skeletal-leukemia-acute-colon-Tracheal0
C123-CD19-Natural-CD8-CD4-CD14-Peripheral-Basophils0
C124-small-temporal-duodenum-colon-gall-signet-Hepatocyte0
C125-mucinous-alveolar-mesothelioma-Smooth-lung-CD14-Nucleus0
C126-gastrointestinal-argyrophil-smallcell-merkel-bile-insula-brain0
C127-maxillary-small-hepatoblastoma-hepatocellular-alveolar-colon-argyrophil0
C128-testicular-choriocarcinoma-H9-teratocarcinoma-pancreatic-iPS-HES3GFP0
C129-liver-Hepatocyte-colon-duodenum-temporal-testicular-small0
C13-Neutrophils-Eosinophils-CD14-Monocytederived-Whole-Peripheral-CD40
C130-iPS-HES3GFP-H9-teratocarcinoma-testicular-colon-Alveolar0
C131-lung-trachea-Alveolar-thyroid-umbilical-throat-skin0
C132-acute-small-Dendritic-Macrophage-CD14-Neutrophils-Monocytederived0
C133-signet-gall-small-kidney-colon-ductal-adenocarcinoma0
C134-skeletal-diaphragm-tongue-throat-Skeletal-skin-penis0
C135-neuroblastoma-retinoblastoma-carcinoid-choriocarcinoma-testicular-acute-rectum0
C136-Wilms-extraskeletal-anaplastic-rhabdomyosarcoma-cholangiocellular-nonsmall-neuroectodermal0
C137-large-ductal-melanoma-cervical-Endothelial-Smooth-chronic0
C138-diffuse-Burkitt-lymphangiectasia-lymphoma-acute-CD19-pineal0
C139-astrocytoma-skin-salivary-gall-serous-Mallassezderived-renal0
C14-Whole-blood-Reticulocytes-liver-Neutrophils-Eosinophils-spleen0
C140-Renal-Endothelial-Hepatic-Lymphatic-heart-lung-spleen0
C141-Hodgkin-acute-thymus-chronic-vein-CD4-B0
C142-Preadipocyte-Fibroblast-hepatic-Ewing-Adipocyte-Olfactory-Hair0
C143-Monocytederived-CD14-Macrophage-Dendritic-Basophils-CD14CD16-Osteoblast1.3
C144-CD4-tonsil-NK-appendix-CD8-splenic-mycosis0
C145-neuroblastoma-peripheral-neuroectodermal-neuroepithelioma-carcinoid-adult-extraskeletal0
C146-lymphangiectasia-lymphoma-gall-lymph-tonsil-gastric-transitionalcell0
C147-Neutrophils-Eosinophils-CD4-CD14-CD8-Natural-Peripheral0
C148-kidney-small-epididymis-pancreas-serous-duodenum-temporal0
C149-occipital-medial-brain-amygdala-parietal-cerebral-cerebellum0
C15-anaplastic-small-skeletal-neuroblastoma-parietal-temporal-tongue0
C150-merkel-carcinoid-nonsmall-gastrointestinal-argyrophil-pineal-small0
C151-CD14-Natural-Basophils-CD8-Eosinophils-CD4-Mast0
C152-peripheral-neuroectodermal-neuroepithelioma-neuroblastoma-testicular-carcinoid-lung0
C153-rhabdomyosarcoma-liposarcoma-pancreatic-somatostatinoma-Reticulocytes-lymphoma-testicular0
C154-adenocarcinoma-Mesenchymal-Cardiac-small-sacrococcigeal-Smooth-Prostate0
C155-pituitary-placenta-nonsmall-cervical-smallcell-choriocarcinoma-epitheloid0
C156-plasma-splenic-hereditary-B-large-xeroderma-b0
C157-testicular-H9-testis-iPS-teratocarcinoma-colon-trachea0
C158-adrenal-gastric-temporal-parietal-duodenum-caudate-putamen0
C159-choriocarcinoma-pancreatic-placenta-chorionic-testicular-bronchioalveolar-seminal0
C16-medial-amygdala-occipital-parietal-olfactory-putamen-brain0
C160-medulla-Hepatocyte-retina-corpus-liver-pineal-cerebral0
C161-mesothelioma-Mesothelial-acute-mesenchymal-extraskeletal-renal-placenta0
C162-spinal-locus-medulla-substantia-thalamus-globus-diencephalon0
C163-Skeletal-skeletal-Pericytes-Hepatic-rhabdomyosarcoma-throat-mesenchymal0
C164-signet-corpus-optic-mucinous-substantia-salivary-choriocarcinoma0
C165-epithelioid-Adipocyte-mesothelioma-myxofibrosarcoma-lung-gastric-Mesothelial0
C166-Macrophage-Monocytederived-Dendritic-adipose-lymph-CD14-lung0.493
C167-Basophils-Mast-Eosinophils-Neutrophils-Peripheral-Whole-CD40
C168-Mast-CD14-immature-Basophils-Eosinophils-CD34-Peripheral0
C169-hereditary-adult-gall-lymphangiectasia-chronic-b-choriocarcinoma0
C17-Mast-CD14-Monocytederived-Lymphatic-Smooth-mesenchymal-Macrophage0
C170-epitheloid-cervical-Hep2-keratoacanthoma-adult-neuroblastoma-signet0
C171-merkel-neuroblastoma-pineal-retinoblastoma-carcinoid-small-eye0
C172-chorionic-skeletal-tongue-amniotic-liver-gastrointestinal-Pericytes0
C173-Adipocyte-mature-skin-left-Hepatocyte-Osteoblast-adipose0
C174-CD14-Neutrophils-Smooth-mesothelioma-embryonic-Monocytederived-Eosinophils0
C175-Eosinophils-Neutrophils-CD4-Basophils-CD19-CD8-Natural0
C176-Eosinophils-Neutrophils-Mast-CD14-CD4-Basophils-CD19-0.0154
C177-melanoma-Melanocyte-mesenchymal-retina-Mallassezderived-Gingival-squamous0
C178-spleen-liver-Hepatocyte-b-lymph-vein-thymus0
C179-CD19-Peripheral-lymphoma-blood-lymph-spleen-tonsil0
C18-CD4-CD8-thymus-Whole-Peripheral-Natural-blood0
C180-skeletal-heart-Hepatocyte-acute-occipital-hippocampus-middle0.82
C181-liposarcoma-somatostatinoma-neuroblastoma-mesothelioma-nonsmall-small-Alveolar0
C182-renal-mature-mesothelioma-lung-Mammary-Adipocyte-acute0
C183-acute-non-CD34-diffuse-CD133-myeloma-Burkitt0
C184-somatostatinoma-smallcell-nonsmall-small-gastrointestinal-pineal-thyroid0
C185-small-adrenal-gastric-Mesenchymal-acute-HES3GFP-testis0
C186-squamous-papillotubular-large-Tracheal-oral-Small-epidermoid0
C187-migratory-immature-Dendritic-CD19-CD14-Monocytederived-Macrophage1.062
C188-left-heart-tongue-skeletal-Skeletal-diaphragm-throat0
C189-b-splenic-tonsil-CD19-lymph-appendix-spleen0
C19-embryonic-testis-cord-chronic-CD14-NK-mesothelioma0
C190-colon-small-rectum-duodenum-appendix-temporal-oral0
C191-leiomyoblastoma-Mast-parietal-acute-bone-neuroepithelioma-embryonic0
C192-Neutrophils-CD14-Peripheral-Eosinophils-CD8-Natural-CD40
C193-Mesenchymal-Adipocyte-mature-Cardiac-heart-CD14CD16-CD140
C194-MCF7-breast-prostate-Intestinal-diffuse-Wilms-Alveolar0
C195-Small-Gingival-Bronchial-Smooth-mesenchymal-Urothelial-Tracheal0
C196-testicular-iPS-H9-teratocarcinoma-HES3GFP-choriocarcinoma-endometrial0
C197-tongue-esophagus-tonsil-salivary-cervix-nasal-Gingival0
C198-Mesenchymal-Hair-Hepatic-Fibroblast-Smooth-tenocyte-Pericytes0
C199-glioblastoma-B-osteosarcoma-Fibroblast-heart-rhabdomyosarcoma-myxofibrosarcoma0
C2-Eosinophils-Neutrophils-CD14-Whole-Basophils-Peripheral-Mast0
C20-heart-left-skeletal-diaphragm-tongue-umbilical-throat0
C200-seminal-Cardiac-Smooth-Hair-submaxillary-Neutrophils-mixed0.921
C201-colon-small-adenocarcinoma-duodenum-temporal-signet-gall0
C202-salivary-skin-penis-tongue-uterus-cervical-immature0
C203-acute-NK-chronic-CD133-lymphoma-immature-Dendritic0
C204-Smooth-nasal-CD4-CD19-CD8-CD14-CD340
C205-mycosis-cord-hairy-xeroderma-CD4-B-b0
C206-melanoma-somatostatinoma-nonsmall-small-neuroblastoma-smallcell-pituitary0
C207-Corneal-Keratinocyte-Esophageal-Mammary-Bronchial-Urothelial-Sebocyte0
C208-skin-amniotic-papillotubular-salivary-umbilical-Alveolar-serous0
C209-acute-myelodysplastic-CD34-granulocyte-CD133-liver-spleen0
C21-cord-mycosis-hairy-xeroderma-adult-CD4-anaplastic0
C210-Burkitt-lymphoma-appendix-acute-diffuse-CD19-tonsil0
C211-small-Hepatocyte-liver-colon-temporal-duodenum-kidney0
C212-chronic-acute-Whole-Reticulocytes-leukemia-blood-CD340
C213-CD14-Natural-CD8-CD4-Basophils-Eosinophils-Peripheral0
C214-Neurons-Neural-duodenum-temporal-occipital-parietal-brain0
C215-chronic-acute-peripheral-Hepatocyte-osteosarcoma-NK-immature0
C216-osteosarcoma-Smooth-Mesenchymal-large-neuroectodermal-acute-CD340
C217-carcinoid-neuroectodermal-mature-mesodermal-colon-acute-occipital0
C218-tonsil-lymph-CD19-spleen-colon-appendix-salivary0
C219-nasal-Basophils-amniotic-Melanocyte-CD14-Osteoblast-duodenum0
C22-CD4-CD8-Natural-Basophils-CD14-Peripheral-CD190
C220-Adipocyte-mature-left-breast-skin-liver-adipose0
C221-alveolar-Osteoblast-Myoblast-mesenchymal-liposarcoma-Smooth-hepatocellular0
C222-Melanocyte-Tracheal-Neutrophils-seminal-Smooth-Hair-Chondrocyte0.878
C223-Chondrocyte-basal-renal-Fibroblast-Smooth-spindle-Synoviocyte0
C224-clear-serous-pleomorphic-choriocarcinoma-mesothelioma-amniotic-renal0
C225-ductal-alveolar-giant-prostate-salivary-squamous-Tracheal0
C226-Corneal-Keratinocyte-Esophageal-Urothelial-Mammary-Bronchial-Tracheal0
C227-chorionic-amniotic-Mesenchymal-Placental-gastric-diaphragm-tongue0
C228-colon-Intestinal-Prostate-hepatoblastoma-hepatocellular-testis-adult0
C229-Mesenchymal-CD4-Melanocyte-acute-skeletal-left-heart0
C23-CD4-CD8-Natural-Peripheral-Basophils-CD19-CD140
C230-aorta-normal-heart-penis-osteosarcoma-basal-lung0
C231-Mesothelial-mesenchymal-mesothelioma-Fibroblast-Preadipocyte-leiomyoma-mycosis0
C232-teratocarcinoma-HES3GFP-H9-iPS-testicular-neuroblastoma-cerebellum0
C233-uterus-cervix-ovary-epididymis-colon-rectum-MCF70
C234-oral-epidermoid-malignant-cervical-ductal-lung-keratoacanthoma0
C235-Intestinal-Prostate-liver-colon-small-kidney-pancreas0
C236-CD14-Neutrophils-Monocytederived-renal-Eosinophils-testis-mesothelioma0
C237-acute-breast-testicular-hepatoblastoma-chronic-argyrophil-Bronchial0
C238-stomach-gall-breast-duodenum-temporal-MCF7-smallcell0
C239-CD4-lymphangiectasia-CD8-NK-mycosis-Renal-hairy0
C24-pineal-eye-retina-retinoblastoma-medulloblastoma-small-cerebral0
C240-Adipocyte-Preadipocyte-Osteoblast-Chondrocyte-tenocyte-Synoviocyte-mesenchymal0
C241-Reticulocytes-chronic-Tracheal-Hodgkin-Endothelial-Hair-thymus-0.348
C242-acute-Chondrocyte-myelodysplastic-granulocyte-biphenotypic-Fibroblast-stomach0
C243-Chondrocyte-trachea-Synoviocyte-mesodermal-renal-Fibroblast-Ewing0
C244-CD14-Monocytederived-Hepatocyte-heart-Neutrophils-acute-Macrophage0
C245-prostate-penis-salivary-esophagus-kidney-Neutrophils-Pancreatic0
C246-Neutrophils-Eosinophils-Whole-CD14-CD14CD16-Basophils-migratory0.585
C247-pons-locus-medulla-spinal-paracentral-medial-occipital0
C248-iPS-Aortic-Hep2-amygdala-acute-medial-Myoblast0.637
C249-nonsmall-small-smallcell-occipital-somatostatinoma-maxillary-medial0
C25-small-colon-temporal-duodenum-liver-Hepatocyte-gall0
C250-Mast-Neutrophils-CD14-Eosinophils-CD8-Peripheral-CD40
C251-gall-tonsil-trachea-CD14-salivary-throat-tongue0
C252-hepatic-Olfactory-sacrococcigeal-leiomyoma-normal-Synoviocyte-glioblastoma0
C253-spleen-rhabdomyosarcoma-Hepatocyte-small-uterus-liver-rectum0
C254-prostate-rhabdomyosarcoma-seminal-Fibroblast-transitionalcell-Smooth-Iris0
C255-Wilms-leiomyoblastoma-kidney-adrenal-MCF7-epithelioid-Mast0
C256-occipital-caudate-amygdala-medial-thalamus-hippocampus-medulla0
C257-pineal-insula-frontal-occipital-temporal-medial-paracentral0
C258-hepatoblastoma-hepatocellular-signet-colon-Intestinal-Prostate-gastric0
C259-Preadipocyte-Adipocyte-Fibroblast-Chondrocyte-tenocyte-normal-Ewing0
C26-Eosinophils-Neutrophils-CD14-CD14CD16-Basophils-Monocytederived-Whole0.397
C260-acute-chronic-Natural-NK-Basophils-biphenotypic-blood0
C261-locus-medial-parietal-pons-diencephalon-olfactory-spinal0
C262-breast-MCF7-skeletal-Reticulocytes-mucinous-hepatoblastoma-Wilms0
C263-cervical-keratoacanthoma-tongue-skin-esophagus-throat-tonsil0
C264-giant-keratoacanthoma-colon-fibrosarcoma-HES3GFP-Hep2-acute0
C265-CD4-Eosinophils-CD14-Natural-CD19-Basophils-CD80
C266-acute-chronic-leukemia-small-choriocarcinoma-hepatoma-Mast0
C267-pancreatic-placenta-choriocarcinoma-testicular-teratocarcinoma-chorionic-clear0
C268-Mallassezderived-Urothelial-Gingival-Small-Bronchial-Tracheal-Prostate0
C269-Basophils-Mast-Eosinophils-mature-CD14-chorionic-CD40
C27-pancreas-temporal-duodenum-salivary-ductus-umbilical-lung0
C270-CD4-Fibroblast-acute-iPS-Aortic-CD34-Smooth0.35
C271-pineal-spinal-locus-globus-medulla-thalamus-cerebellum0
C272-CD19-CD4-CD8-Whole-Peripheral-lymph-tonsil0
C273-Neutrophils-CD14-Eosinophils-Monocytederived-CD4-Natural-Mast0.493
C274-CD14-Mast-immature-Basophils-mature-vagina-Hepatocyte0
C275-pons-medulla-cerebellum-locus-thalamus-diencephalon-spinal0
C276-mesothelioma-kidney-renal-small-clear-cerebellum-Renal0
C277-mesothelioma-epithelioid-thyroid-extraskeletal-alveolar-glioblastoma-adenocarcinoma0
C278-amygdala-hippocampus-insula-medial-putamen-temporal-olfactory0
C279-parietal-cerebellum-occipital-temporal-middle-duodenum-medial0
C28-thymus-acute-vein-Hodgkin-chronic-throat-Dendritic0
C280-Mast-Natural-CD19-CD8-Eosinophils-CD34-CD40
C281-Hodgkin-Reticulocytes-chronic-NK-acute-retinoblastoma-small-0.396
C282-acute-B-tonsil-CD19-submaxillary-lymph-throat0
C283-tenocyte-Chondrocyte-mesenchymal-Macrophage-pleomorphic-Synoviocyte-cholangiocellular0.717
C284-parietal-occipital-medial-temporal-olfactory-locus-hippocampus0
C285-cervical-Hep2-small-colon-temporal-duodenum-bronchogenic0
C286-cerebellum-occipital-optic-parietal-globus-caudate-medial0
C287-Hepatocyte-Chondrocyte-Adipocyte-Synoviocyte-liver-tenocyte-mesenchymal0
C288-Chondrocyte-Renal-Pericytes-Fibroblast-aorta-Smooth-Meningeal0
C289-chorionic-skeletal-heart-Mast-amniotic-granulosa-left0
C29-mature-adipose-Adipocyte-breast-Lymphatic-vein-heart0
C290-Eosinophils-CD14-Basophils-Mast-CD4-CD8-immature0
C291-spinal-substantia-retina-medulla-tongue-skeletal-trachea0
C292-Mesenchymal-skin-umbilical-Adipocyte-mesenchymal-Chondrocyte-skeletal0
C293-CD14-CD14CD16-Basophils-Peripheral-immature-Eosinophils-CD340
C294-CD14-Macrophage-Monocytederived-CD14CD16-Neutrophils-Basophils-Peripheral1.073
C295-Fibroblast-Smooth-Myoblast-Chondrocyte-hepatic-Synoviocyte-Preadipocyte0.45
C296-gall-small-mesothelioma-acute-bronchioalveolar-epidermoid-mixed0
C297-Eosinophils-CD4-Basophils-Natural-Neutrophils-CD8-Peripheral0
C298-small-optic-substantia-thalamus-diencephalon-globus-occipital0
C299-CD14CD16-Eosinophils-Neutrophils-CD14-Whole-Basophils-blood0
C3-occipital-temporal-insula-medial-postcentral-frontal-amygdala0
C30-thyroid-throat-mesothelioma-mucinous-trachea-chorionic-mesenchymal0
C300-CD4-CD8-NK-Natural-blood-mycosis-Basophils0
C301-Smooth-mesenchymal-Endothelial-Hepatic-basal-hepatic-chorionic0
C302-acute-peripheral-Neutrophils-NK-myelodysplastic-CD34-carcinoid0
C303-CD14-Basophils-Peripheral-Eosinophils-CD14CD16-Neutrophils-Whole0
C305-heart-skeletal-smooth-left-bladder-penis-esophagus0
C31-skeletal-tongue-diaphragm-throat-penis-skin-trachea0
C32-middle-occipital-parietal-hippocampus-amygdala-medial-olfactory0
C33-Reticulocytes-liver-Whole-blood-chronic-acute-spleen0
C34-placenta-chorionic-choriocarcinoma-mesothelioma-Wilms-Smooth-bile0
C35-caudate-putamen-diencephalon-nucleus-globus-thalamus-insula0
C36-B-b-splenic-plasma-xeroderma-adrenal-Burkitt0
C37-salivary-submaxillary-parotid-seminal-tongue-ductus-trachea0
C38-extraskeletal-rhabdomyosarcoma-adrenal-rectal-mesothelioma-lung-Wilms0
C39-epididymis-ductus-seminal-testis-acute-thyroid-CD1330
C4-optic-corpus-substantia-medulla-spinal-thalamus-globus0
C40-eye-retina-Lens-pineal-tongue-retinoblastoma-small0
C41-retina-eye-medulla-Retinal-medulloblastoma-kidney-pineal0
C42-small-lung-maxillary-pharyngeal-Mesenchymal-Wilms-colon0
C43-ductus-seminal-duodenum-temporal-gall-prostate-bladder0
C44-Dendritic-CD19-CD133-granulocyte-acute-thymus-immature0
C45-testicular-choriocarcinoma-H9-teratocarcinoma-Wilms-pancreatic-iPS0
C46-acute-Hodgkin-thymus-CD8-chronic-CD4-merkel0
C47-CD19-Burkitt-acute-xeroderma-tonsil-lymphoma-appendix0
C48-smooth-bladder-esophagus-colon-penis-aorta-uterus0
C49-H9-iPS-testicular-HES3GFP-teratocarcinoma-hepatoblastoma-choriocarcinoma0
C5-Hepatocyte-liver-hepatocellular-Intestinal-kidney-small-pancreas0
C50-chorionic-placenta-amniotic-migratory-smallcell-chronic-choriocarcinoma0
C51-kidney-mesothelioma-renal-signet-gall-lung-pancreas0
C52-adult-NK-chronic-cord-testis-embryonic-myeloma0
C53-medulloblastoma-pineal-retinoblastoma-small-retina-eye-pituitary0
C54-Dendritic-Macrophage-Monocytederived-CD14-leiomyoma-adipose-immature0
C55-hepatocellular-Intestinal-liver-Prostate-fibrosarcoma-Hepatocyte-hepatoblastoma0
C56-heart-left-umbilical-skeletal-penis-diaphragm-tongue0
C57-Neutrophils-Eosinophils-Whole-CD4-CD8-CD19-Natural0
C58-Melanocyte-melanoma-retina-Retinal-eye-migratory-H90
C59-Smooth-Fibroblast-Mesenchymal-tenocyte-Ewing-skin-hepatic0
C6-CD14-Eosinophils-Basophils-Peripheral-CD34-Natural-immature0
C60-esophagus-tonsil-throat-tongue-uterus-cervix-cervical0
C61-migratory-Dendritic-immature-Macrophage-xeroderma-cord-b0
C62-Burkitt-tonsil-CD19-submaxillary-spleen-salivary-lymph0
C63-neuroectodermal-neuroblastoma-carcinoid-peripheral-chronic-neuroepithelioma-acute0
C64-Mast-chronic-acute-immature-chorionic-Basophils-Dendritic0
C65-CD14-Eosinophils-Monocytederived-Basophils-immature-Macrophage-Neutrophils0
C66-cerebellum-middle-occipital-parietal-medial-amygdala-hippocampus0
C67-CD14-Monocytederived-Macrophage-dura-Dendritic-spleen-lung0.493
C68-amniotic-chorionic-Placental-salivary-placenta-tongue-mesothelioma0
C69-anaplastic-CD14-cord-hairy-mycosis-adult-NK0
C7-CD14-Eosinophils-Neutrophils-Smooth-Basophils-Macrophage-Mast0
C70-parotid-submaxillary-salivary-throat-trachea-aorta-tongue0
C71-Monocytederived-Macrophage-CD14-Dendritic-Osteoblast-leiomyoma-Prostate1.453
C72-skeletal-tongue-throat-heart-diaphragm-penis-left0
C73-pineal-eye-retina-caudate-cerebellum-left-parietal0
C74-splenic-B-b-plasma-xeroderma-lymphoma-hairy0
C75-Eosinophils-Natural-CD8-Basophils-CD14-CD4-Peripheral0
C76-argyrophil-gastrointestinal-temporal-duodenum-neuroblastoma-merkel-smallcell0
C77-Saos2-osteosarcoma-Neutrophils-Natural-Chondrocyte-Basophils-CD80
C78-lymphoma-plasma-tonsil-appendix-lymph-seminal-trachea0
C79-chorionic-Chondrocyte-Cardiac-Smooth-Fibroblast-Preadipocyte-Mesenchymal0
C8-Natural-CD8-Basophils-CD4-CD14-Peripheral-CD340
C80-immature-migratory-CD14-Dendritic-splenic-cord-Mast0
C81-trachea-salivary-throat-aorta-eye-submaxillary-parotid0
C82-Basophils-CD14-Eosinophils-Natural-Peripheral-immature-CD340
C83-choriocarcinoma-pancreatic-placenta-chorionic-HES3GFP-testicular-amniotic0
C84-choriocarcinoma-pancreatic-Wilms-Mallassezderived-thymus-salivary-colon0
C85-neuroblastoma-carcinoid-retinoblastoma-small-pineal-rhabdomyosarcoma-medulloblastoma0
C86-colon-carcinoid-small-neuroectodermal-giant-large-neuroepithelioma0
C87-retinoblastoma-left-nonsmall-heart-small-diaphragm-bronchogenic0
C88-Melanocyte-melanoma-Macrophage-Mesenchymal-migratory-Dendritic-Monocytederived0
C89-small-retinoblastoma-medulloblastoma-iPS-acantholytic-eye-bronchogenic0
C9-skeletal-diaphragm-tongue-throat-penis-heart-left0
C90-neuroectodermal-peripheral-neuroepithelioma-neuroblastoma-carcinoid-parietal-putamen0
C91-Fibroblast-Smooth-mesenchymal-Mesothelial-Small-Preadipocyte-Hair0
C92-CD14CD16-CD14-Eosinophils-Basophils-Neutrophils-Macrophage-Whole0
C93-chronic-acute-leukemia-acantholytic-medulloblastoma-testis-papillotubular0
C94-smallcell-adrenal-lung-nonsmall-small-somatostatinoma-teratocarcinoma0
C95-lung-aorta-trachea-penis-Alveolar-throat-endometrioid0
C96-non-acute-tonsil-spleen-Burkitt-lymphoma-appendix0
C97-small-smallcell-gastrointestinal-argyrophil-putamen-duodenum-brain0
C98-CD8-Natural-Basophils-blood-CD4-Peripheral-Whole0
C99-hairy-mycosis-submaxillary-salivary-cord-kidney-parotid0



Repeat families with enriched expression in this sample<b>Summary:</b>Ranked list of repeat family expression in this sample relative tothe median expression in the FANTOM5 collection is shown. Value is log10transformed.<br><b>Analyst:</b>NA<br><br>link to dataset.<br>data



TFBS(DNA)motifs over-represented in proximal region of promoters active in this sample

JASPAR motifs<b>Summary:</b>Association of JASPAR motif to the promoter expression in thissample. Pearson's correlation between the number of TFBSs estimated byusing the position-weight matrix for each promoter and its expression isexpressed as Z-score by taking the ones based on random position-weightmatrix, and the tail probability of the normal distribution correspondingto the Z-score is taken as the resulting P-value. Lower P-value indicatesmore (non-random) association of the motif to promoter expression<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data

library id: CNhs13639

Jaspar motifP-value
MA0002.20.00296
MA0003.10.168
MA0004.10.648
MA0006.10.721
MA0007.10.199
MA0009.10.0994
MA0014.10.739
MA0017.10.0275
MA0018.26.6275e-4
MA0019.10.207
MA0024.10.0263
MA0025.10.00541
MA0027.10.479
MA0028.10.0566
MA0029.10.55
MA0030.19.19678e-4
MA0031.10.165
MA0035.20.443
MA0038.10.00506
MA0039.20.275
MA0040.10.954
MA0041.10.0668
MA0042.10.244
MA0043.19.48741e-5
MA0046.10.0317
MA0047.20.816
MA0048.10.979
MA0050.10.515
MA0051.10.94
MA0052.10.0356
MA0055.10.795
MA0057.10.707
MA0058.10.5
MA0059.10.145
MA0060.12.87353e-9
MA0061.10.124
MA0062.20.0703
MA0065.20.00272
MA0066.10.0132
MA0067.10.763
MA0068.11.48602e-4
MA0069.10.894
MA0070.10.318
MA0071.10.0975
MA0072.10.701
MA0073.10.507
MA0074.10.193
MA0076.10.014
MA0077.10.527
MA0078.10.976
MA0079.20.165
MA0080.26.29503e-6
MA0081.10.0567
MA0083.10.899
MA0084.10.221
MA0087.10.709
MA0088.10.429
MA0090.10.258
MA0091.10.0991
MA0092.10.178
MA0093.10.685
MA0099.20.88
MA0100.10.472
MA0101.10.951
MA0102.20.497
MA0103.10.159
MA0104.20.515
MA0105.11.66128e-5
MA0106.10.609
MA0107.10.849
MA0108.21.12156e-5
MA0111.10.33
MA0112.22.83741e-5
MA0113.10.601
MA0114.10.0472
MA0115.10.642
MA0116.14.00956e-5
MA0117.10.938
MA0119.10.213
MA0122.10.645
MA0124.10.221
MA0125.10.382
MA0131.10.251
MA0135.10.425
MA0136.10.133
MA0137.20.0403
MA0138.20.106
MA0139.10.212
MA0140.10.415
MA0141.10.028
MA0142.10.115
MA0143.10.19
MA0144.10.709
MA0145.10.265
MA0146.10.185
MA0147.10.411
MA0148.10.71
MA0149.10.0225
MA0150.10.418
MA0152.10.868
MA0153.10.0468
MA0154.10.00347
MA0155.10.592
MA0156.10.716
MA0157.10.933
MA0159.10.00581
MA0160.10.0997
MA0162.10.326
MA0163.11.56635e-11
MA0164.10.813
MA0258.10.0018
MA0259.10.859



FANTOM5 phase1 novel unique motifs<b>Summary:</b>Association of the 169 novel and unique motifs discovered in FANTOM5 phase1 in this sample. Among the de-novo motifs discovered by DMF, HOMER,ChIPMunk, and ScanAll, only novel motifs are selected after comparison with known motif sets, and their clustering based on MACRO-APE resulted in169 novel and unique motifs. Their association to the promoter expression is evaluated in the same way to the JASPAR motif above<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data

library id: CNhs13639

Novel motifP-value
10.0333
100.0272
1000.576
1010.253
1020.792
1030.0864
1040.686
1050.901
1060.0154
1070.0672
1080.432
1090.131
110.0639
1100.108
1110.00135
1120.0227
1130.874
1140.00282
1150.458
1160.424
1170.121
1180.317
1190.0306
120.911
1200.863
1210.286
1220.579
1230.077
1240.306
1250.0143
1260.539
1270.219
1280.0415
1290.345
130.129
1300.135
1310.494
1320.806
1330.552
1340.777
1350.19
1360.908
1370.0994
1380.542
1390.0279
140.574
1400.0872
1410.439
1420.767
1430.184
1440.371
1450.125
1460.792
1470.899
1480.00577
1490.213
150.072
1500.475
1510.438
1520.325
1530.835
1540.69
1550.13
1560.651
1570.584
1580.474
1590.804
160.135
1600.0935
1610.406
1620.387
1630.809
1640.217
1650.116
1660.807
1670.0267
1680.507
1690.004
170.138
180.0991
190.149
20.855
200.839
210.262
220.295
230.169
240.485
250.703
260.0156
270.232
280.874
290.288
30.054
300.459
310.595
320.128
330.396
340.648
350.115
360.0317
370.133
380.207
390.426
40.743
400.243
410.485
420.527
430.0882
440.0231
450.821
460.0371
470.175
480.223
490.131
50.379
500.99
510.447
520.374
530.614
540.43
550.161
560.553
570.212
580.235
590.118
60.293
600.0894
610.356
620.0924
630.207
640.18
650.0914
660.65
670.234
680.721
690.353
70.414
700.00913
710.0448
720.325
730.209
740.517
750.111
760.451
770.171
780.148
790.00175
80.0356
800.781
810.138
820.0841
830.989
840.771
850.00586
860.225
870.652
880.774
890.0495
90.439
900.054
910.373
920.0829
930.396
940.0245
950.267
960.076
970.994
980.116
990.978



de novo motifs identified by HOMER in promoters active in this sample<b>Summary:</b>The result of HOMER in this sample is shown.<br><b>Analyst:</b>NA <br> library id: CNhs13639


FANTOM5 (FF) ontology

Direct parent terms


Ancestor terms (non development)<b>Summary:</b>Connected ontology terms with is_a, part_of or located_in relationship <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source data<br>data

CL: Cell type
0000000 (cell), 0000000 (cell)
0000003 (native cell)
0000988 (hematopoietic cell)
0000548 (animal cell)
0000763 (myeloid cell)
0002371 (somatic cell)
0000766 (myeloid leukocyte)
0000219 (motile cell)
0000325 (stuff accumulating cell)
0000473 (defensive cell)
0000234 (phagocyte)
0000738 (leukocyte)
0000255 (eukaryotic cell)
0000235 (macrophage)

FF: FANTOM5
0000102 (sample by type)
0000210 (human sample)
0000002 (in vivo cell sample)
0000101 (sample by species)
0000001 (sample)
0000625 (experimental infection sample)
0000350 (experimentally modified sample)
0000357 (0 hr sample)
0000086 (human macrophage sample)
0000647 (udorn influenza infection sample)
0011215 (human Monocyte-derived macrophages 0h after udorn influenza infection sample)

Ancestor terms (development)<b>Summary:</b>Connected ontology terms with develops_from, derives_from or preceded_by relationship <br><b>Analyst:</b> Hideya Kawaji <br><br>link to source data<br>data
CL:0000049 (common myeloid progenitor)
CL:0000134 (mesenchymal cell)

Retrieved from "http://f5-webapp4.gsc.riken.jp/resource_browser/index.php?title=FF:13311-142I8&oldid=4577735"