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{{f5samples
{{f5samples
|ancestors_in_anatomy_facet=UBERON:0000061,UBERON:0000062,UBERON:0000465,UBERON:0000467,UBERON:0000468,UBERON:0000475,UBERON:0000479,UBERON:0000480,UBERON:0001062,UBERON:0002097,UBERON:0002199,UBERON:0002384,UBERON:0002416,UBERON:0003102
|DRA_sample_Accession=CAGE@SAMD00005248
|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000004,CL:0000012,CL:0000034,CL:0000048,CL:0000055,CL:0000057,CL:0000063,CL:0000134,CL:0000144,CL:0000219,CL:0000255,CL:0000548,CL:0000723,CL:0002320,CL:0002371,CL:0002620
|accession_numbers=CAGE;DRX008036;DRR008908;DRZ000333;DRZ001718;DRZ011683;DRZ013068
|ancestors_in_disease_facet=DOID:0080000,DOID:11722,DOID:17,DOID:4,DOID:423,DOID:450,DOID:66,DOID:7
|ancestors_in_anatomy_facet=UBERON:0000468,UBERON:0002097,UBERON:0002199,UBERON:0002384,UBERON:0000479,UBERON:0000062,UBERON:0000061,UBERON:0000465,UBERON:0000467,UBERON:0001062,UBERON:0000480,UBERON:0003102,UBERON:0002416
|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000548,CL:0002320,CL:0002371,CL:0000255,CL:0000057,CL:0002620
|ancestors_in_disease_facet=DOID:4,DOID:17,DOID:450,DOID:7,DOID:66,DOID:423,DOID:0080000,DOID:11722
|ancestors_in_ff_facet=FF:0000102,FF:0000210,FF:0000002,FF:0000101,FF:0000057,FF:0000250,FF:0000001,FF:0000408,FF:0000350,FF:0000253,FF:0000406,FF:0000667
|comment=
|comment=
|created_by=
|created_by=
|creation_date=
|creation_date=
|data_phase=2
|datafreeze_phase=2
|def=
|def=
|expression_enrichment_score=chr1:197886461..197886558,+!p1@LHX9!2.35!224.47!LHX9;;chr9:132427883..132427951,+!p2@PRRX2!1.68!47.41!PRRX2;;chr7:19157248..19157268,-!p1@TWIST1!1.67!123.34!TWIST1;;chr15:57511609..57511651,+!p2@TCF12!1.67!75.92!TCF12;;chr12:54410664..54410684,+!p1@HOXC4,p1@HOXC5,p1@HOXC6!1.50!30.31!HOXC5;;chr5:2751762..2751784,-!p1@IRX2!1.43!26.11!IRX2;;chr5:72744594..72744609,-!p1@FOXD1!1.33!91.53!FOXD1;;chr11:46299199..46299233,+!p1@CREB3L1!1.28!92.43!CREB3L1;;chr9:132427972..132428056,+!p1@PRRX2!1.27!22.81!PRRX2;;chr5:2751785..2751808,-!p2@IRX2!1.22!15.60!IRX2;;chr5:321810..321877,+!p1@AHRR!1.21!47.71!AHRR;;chrY:21906594..21906622,-!p1@KDM5D!1.21!15.30!KDM5D;;chr11:46299539..46299620,+!p2@CREB3L1!1.20!24.91!CREB3L1;;chr2:102091566..102091581,-!p1@RFX8!1.20!14.70!RFX8;;chr19:47523058..47523114,+!p1@NPAS1!1.20!14.70!NPAS1;;chr7:44143925..44143970,+!p1@AEBP1!1.17!302.79!AEBP1;;chr4:174451370..174451387,-!p1@HAND2!1.17!13.80!HAND2;;chr7:44143978..44143989,+!p2@AEBP1!1.15!24.01!AEBP1;;chr17:46682321..46682362,-!p1@HOXB6!1.15!13.20!HOXB6;;chr2:239756671..239756732,+!p1@TWIST2!1.14!41.41!TWIST2;;chr20:55204351..55204377,+!p1@TFAP2C!1.14!16.51!TFAP2C;;chr5:3595977..3595999,+!p1@IRX1!1.14!12.90!IRX1;;chr10:119303078..119303169,+!p2@EMX2!1.14!12.90!EMX2;;chr3:128206762..128206781,-!p2@GATA2!1.13!77.12!GATA2;;chr7:137686763..137686784,-!p5@CREB3L2!1.13!21.91!CREB3L2;;chr3:147111198..147111225,+!p4@ZIC1!1.13!12.60!ZIC1;;chr8:67525443..67525459,-!p2@MYBL1!1.09!17.11!MYBL1;;chr1:170632285..170632309,+!p1@PRRX1!1.09!12.90!PRRX1;;chr15:37392534..37392562,-!p10@MEIS2!1.08!12.00!MEIS2;;chr3:147111231..147111281,+!p3@ZIC1!1.08!11.10!ZIC1;;chr6:10415276..10415341,-!p2@TFAP2A!1.06!12.90!TFAP2A;;chr2:172967242..172967265,-!p2@DLX2!1.06!10.50!DLX2;;chr2:102091144..102091183,-!p2@RFX8!1.04!9.90!RFX8;;chr20:30193083..30193098,+!p1@ID1!1.02!776.64!ID1;;chr12:66218255..66218304,+!p3@HMGA2!1.02!26.11!HMGA2;;chr11:65686802..65686818,+!p6@DRAP1!1.02!16.81!DRAP1;;chr2:172949484..172949522,+!p1@DLX1!1.01!9.30!DLX1;;chr8:93074803..93074845,-!p1@RUNX1T1!1.00!9.00!RUNX1T1;;chr15:37392616..37392638,-!p2@MEIS2!0.99!27.91!MEIS2;;chr11:65687222..65687240,+!p7@DRAP1!0.99!11.40!DRAP1;;chr7:27192185..27192209,-!p1@HOXA3!0.99!8.70!HOXA3;;chr1:197886421..197886432,+!p2@LHX9!0.99!8.70!LHX9;;chr2:176969228..176969260,+!p1@HOXD11!0.97!8.40!HOXD11;;chr8:106330656..106330684,+!p1@ZFPM2!0.96!21.61!ZFPM2;;chr7:27205136..27205164,-!p1@HOXA9!0.96!8.10!HOXA9;;chr12:115121962..115121987,-!p1@TBX3!0.95!69.32!TBX3;;chr6:19837592..19837621,+!p1@ID4!0.95!50.12!ID4;;chr15:37390850..37390909,-!p3@MEIS2!0.95!15.90!MEIS2;;chr16:86544113..86544145,+!p1@FOXF1!0.94!9.60!FOXF1;;chr5:3595961..3595975,+!p3@IRX1!0.94!7.80!IRX1;;chr7:44143997..44144008,+!p3@AEBP1!0.93!9.60!AEBP1;;chr14:24837368..24837401,+!p1@NFATC4!0.92!17.71!NFATC4;;chr15:37392703..37392717,-!p8@MEIS2!0.92!10.50!MEIS2;;chr1:170633348..170633399,+!p2@PRRX1!0.92!10.20!PRRX1;;chr21:36260773..36260804,-!p7@RUNX1!0.92!9.90!RUNX1;;chr2:239756739..239756755,+!p2@TWIST2!0.91!12.60!TWIST2;;chr19:13134772..13134822,+!p2@NFIX!0.91!10.80!NFIX;;chr12:124873357..124873401,-!p1@NCOR2!0.90!84.03!NCOR2;;chr6:10412600..10412637,-!p1@TFAP2A!0.90!12.00!TFAP2A;;chr20:50179368..50179392,-!p2@NFATC2!0.90!9.00!NFATC2;;chr4:174450089..174450153,-!p2@HAND2!0.90!6.90!HAND2;;chr5:3595934..3595957,+!p2@IRX1!0.90!6.90!IRX1;;chr15:37392724..37392757,-!p1@MEIS2!0.89!32.71!MEIS2;;chr15:83953397..83953425,-!p1@BNC1!0.89!7.80!BNC1;;chr22:19748231..19748317,+!p1@TBX1!0.88!6.60!TBX1;;chr12:66218598..66218645,+!p2@HMGA2!0.87!31.51!HMGA2;;chr11:65686732..65686756,+!p2@DRAP1!0.86!28.21!DRAP1;;chr20:51588873..51588953,+!p1@TSHZ2!0.86!8.40!TSHZ2;;chr3:138665937..138665968,-!p1@FOXL2!0.86!6.30!FOXL2;;chr18:22932080..22932170,-!p1@ZNF521!0.85!27.61!ZNF521;;chr15:37392576..37392589,-!p12@MEIS2!0.85!7.50!MEIS2;;chr5:176738887..176738934,-!p1@MXD3!0.84!42.31!MXD3;;chr11:65687362..65687436,+!p3@DRAP1!0.83!27.91!DRAP1;;chr12:54410639..54410659,+!p2@HOXC4,p2@HOXC5,p2@HOXC6!0.83!5.70!HOXC5;;chr3:157824001..157824078,-!p2@SHOX2!0.83!5.70!SHOX2;;chr12:80085061..80085119,-!p6@PAWR!0.82!9.30!PAWR;;chr6:85473156..85473210,-!p2@TBX18!0.82!6.90!TBX18;;chr15:37392593..37392607,-!p13@MEIS2!0.82!6.90!MEIS2;;chr5:72743793..72743855,-!p4@FOXD1!0.82!6.60!FOXD1;;chr3:157823517..157823562,-!p1@SHOX2!0.82!6.00!SHOX2;;chr12:66218378..66218401,+!p6@HMGA2!0.81!8.70!HMGA2;;chr5:43067636..43067674,+!p6@ZNF131!0.81!7.50!ZNF131;;chr6:10412576..10412599,-!p5@TFAP2A!0.81!5.40!TFAP2A;;chr7:27205106..27205134,-!p2@HOXA9!0.81!5.40!HOXA9;;chr11:46316699..46316719,+!p10@CREB3L1!0.81!5.40!CREB3L1;;chr2:66662281..66662308,+!p1@MEIS1!0.80!19.81!MEIS1;;chr12:66218183..66218209,+!p4@HMGA2!0.80!10.80!HMGA2;;chr2:102091478..102091490,-!p3@RFX8!0.79!5.10!RFX8;;chr2:102091514..102091528,-!p6@RFX8!0.79!5.10!RFX8;;chr3:147127142..147127168,+!p1@ZIC1!0.79!5.10!ZIC1;;chr1:197886665..197886732,+!p3@LHX9!0.79!5.10!LHX9;;chr7:27213893..27213954,-!p1@HOXA10!0.79!5.10!HOXA10;;chr8:93074848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|ffid_belonging_in_development=CL:0000134
|fonse_cell_line=
|fonse_cell_line=
|fonse_cell_line_closure=
|fonse_cell_line_closure=
Line 34: Line 41:
|fonse_treatment_closure=
|fonse_treatment_closure=
|has_quality=
|has_quality=
|hg19bam=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.fractionation.hCAGE/Fibroblast%2520-%2520skin%2520dystrophia%2520myotonica%252c%2520donor3%2520%2528nuclear%2520fraction%2529.CNhs12399.14308-155C6.hg19.nobarcode.bam
|hg19ctss=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.fractionation.hCAGE/Fibroblast%2520-%2520skin%2520dystrophia%2520myotonica%252c%2520donor3%2520%2528nuclear%2520fraction%2529.CNhs12399.14308-155C6.hg19.ctss.bed.gz
|hg19fasta=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.fractionation.hCAGE/Fibroblast%2520-%2520skin%2520dystrophia%2520myotonica%252c%2520donor3%2520%2528nuclear%2520fraction%2529.CNhs12399.14308-155C6.hg19.nobarcode.rdna.fa.gz
|hg38bam=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.fractionation.hCAGE/Fibroblast%2520-%2520skin%2520dystrophia%2520myotonica%252c%2520donor3%2520%2528nuclear%2520fraction%2529.CNhs12399.14308-155C6.hg38.nobarcode.bam
|hg38ctss=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.fractionation.hCAGE/Fibroblast%2520-%2520skin%2520dystrophia%2520myotonica%252c%2520donor3%2520%2528nuclear%2520fraction%2529.CNhs12399.14308-155C6.hg38.nobarcode.ctss.bed.gz
|id=FF:14308-155C6
|id=FF:14308-155C6
|is_a=EFO:0002091;;FF:0000210;;FF:0000667
|is_a=EFO:0002091;;FF:0000667
|is_obsolete=
|library_id=CNhs12399
|library_id_phase_based=2:CNhs12399
|microRNAs=
|microRNAs_nn=
|microRNAs_nonnovel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer/#/human#cage;sample;14308
|microRNAs_novel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer_novel/#/human#cage;sample;14308
|name=Fibroblast - skin dystrophia myotonica, donor3 (nuclear fraction)
|name=Fibroblast - skin dystrophia myotonica, donor3 (nuclear fraction)
|namespace=FANTOM5
|namespace=FANTOM5
Line 41: Line 60:
|profile_cagescan=,,,
|profile_cagescan=,,,
|profile_hcage=CNhs12399,LSID914,release011,COMPLETED
|profile_hcage=CNhs12399,LSID914,release011,COMPLETED
|profile_rnaseq=,,,
|profile_rnaseq=
|profile_srnaseq=,,,
|profile_srnaseq=,,,
|refex=http://refex.dbcls.jp/genelist.php?lang
|repeat_enrich_byfamily=0,0,0.056986891976762,0,0,0,0,-0.160318030086386,0,-0.07319269919452,0.625607125780302,0,0,0,0,0,0,0,0,0,0,0,0,0,-0.0393492263949039,0,0,0,0,0,0.74725316482938,0,0,0.607513984114634,0,0,0,0,0,0,0,0,0,0,0.204169432998994,0,0.250404334520917,0.349797051279434,0,0,0,0,0,0,0,-0.0242150211128343,0,0,0,0.113973783953524,0,0,0,0.245502245490119,0,0,0.349899172698826,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0293536090575774,0,0,0,0,0,0,-0.0461902126114719,0,0,0,-0.0914079762423603,0.0898820404962045,0,0.342494606732724,0,0,0.0159384327158173,0.488276568995884,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.187775379367488,0,0,0,-0.0506760246065907,-0.264514243202634,0,0,0.204169432998994,0,0,0
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|rna_box=155
|rna_box=155
|rna_catalog_number=custom
|rna_catalog_number=custom
Line 56: Line 78:
|rna_weight_ug=22.8475
|rna_weight_ug=22.8475
|sample_age=18 year old adult
|sample_age=18 year old adult
|sample_category=fractionations and perturbations
|sample_cell_catalog=N/A
|sample_cell_catalog=N/A
|sample_cell_line=
|sample_cell_line=
Line 68: Line 91:
|sample_ethnicity=C
|sample_ethnicity=C
|sample_experimental_condition=nuclear RNA
|sample_experimental_condition=nuclear RNA
|sample_gostat=GO:0044464;cell part;0!GO:0005622;intracellular;0!GO:0044424;intracellular part;5.22145459830755e-210!GO:0043226;organelle;3.63686642345053e-179!GO:0043229;intracellular organelle;8.66468589987554e-179!GO:0043231;intracellular membrane-bound organelle;8.22967931072762e-177!GO:0043227;membrane-bound organelle;8.22967931072762e-177!GO:0005737;cytoplasm;1.55920924046063e-157!GO:0044422;organelle part;5.04338577359797e-139!GO:0044446;intracellular organelle part;3.7679333094669e-137!GO:0044444;cytoplasmic part;1.72471062747107e-118!GO:0032991;macromolecular complex;4.20616597811862e-82!GO:0044238;primary metabolic process;4.20616597811862e-82!GO:0043170;macromolecule metabolic process;1.43909057253884e-79!GO:0044237;cellular metabolic process;1.36021915362928e-78!GO:0005515;protein binding;4.60402116797935e-72!GO:0005634;nucleus;5.31781940544599e-71!GO:0044428;nuclear part;2.2533185685084e-69!GO:0043233;organelle lumen;1.17299831642793e-65!GO:0031974;membrane-enclosed lumen;1.17299831642793e-65!GO:0030529;ribonucleoprotein complex;1.29047121884962e-63!GO:0003723;RNA binding;4.41670452731227e-63!GO:0016043;cellular component organization and biogenesis;1.89744025608241e-49!GO:0031090;organelle membrane;7.16979897377643e-49!GO:0019538;protein metabolic process;4.87924959676967e-47!GO:0006396;RNA processing;1.13971968075958e-44!GO:0043234;protein complex;1.87451000534286e-43!GO:0043283;biopolymer metabolic process;2.16896580834419e-43!GO:0031981;nuclear lumen;1.81073979675323e-41!GO:0044260;cellular macromolecule metabolic process;2.99024280237905e-40!GO:0005739;mitochondrion;4.90408840705048e-40!GO:0044267;cellular protein metabolic process;1.47120773251884e-39!GO:0033036;macromolecule localization;2.13206702151318e-39!GO:0015031;protein transport;3.38105425440628e-38!GO:0006139;nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;2.12065877286939e-37!GO:0006412;translation;1.38884455898511e-36!GO:0016071;mRNA metabolic process;6.27616180575609e-36!GO:0008104;protein localization;1.14352749622472e-35!GO:0045184;establishment of protein localization;1.93867955029179e-35!GO:0005840;ribosome;1.47145450195332e-34!GO:0046907;intracellular transport;3.75362122799039e-34!GO:0006996;organelle organization and biogenesis;1.97274315416081e-33!GO:0010467;gene expression;5.64966460797801e-33!GO:0009058;biosynthetic process;9.64649777797804e-33!GO:0043228;non-membrane-bound organelle;1.85174294471786e-32!GO:0043232;intracellular non-membrane-bound organelle;1.85174294471786e-32!GO:0009059;macromolecule biosynthetic process;3.75762158477236e-32!GO:0006259;DNA metabolic process;1.19145894869452e-31!GO:0006397;mRNA processing;4.52354658200447e-31!GO:0031967;organelle envelope;1.53866748255722e-30!GO:0008380;RNA splicing;1.83116896423047e-30!GO:0065003;macromolecular complex assembly;2.28416714875619e-30!GO:0003735;structural constituent of ribosome;3.02646926167028e-30!GO:0031975;envelope;3.16290083496165e-30!GO:0005829;cytosol;4.03827316780437e-30!GO:0000166;nucleotide binding;7.64180050755644e-29!GO:0022607;cellular component assembly;4.34350547318966e-28!GO:0006886;intracellular protein transport;7.20722874912806e-28!GO:0044249;cellular biosynthetic process;1.05406429917103e-27!GO:0044429;mitochondrial part;1.24794698330316e-27!GO:0033279;ribosomal subunit;2.60909725422961e-27!GO:0007049;cell cycle;1.04026560193397e-26!GO:0005783;endoplasmic reticulum;2.35055474624043e-26!GO:0012505;endomembrane system;6.0795591126676e-26!GO:0005654;nucleoplasm;4.07407152503669e-25!GO:0022613;ribonucleoprotein complex biogenesis and assembly;1.44135343388074e-24!GO:0016462;pyrophosphatase activity;6.41353214466105e-24!GO:0016818;hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides;1.00087874944676e-23!GO:0016817;hydrolase activity, acting on acid anhydrides;1.44459046526939e-23!GO:0017111;nucleoside-triphosphatase activity;2.28197678171765e-23!GO:0003676;nucleic acid binding;6.61012854233673e-23!GO:0044432;endoplasmic reticulum part;9.16910463559271e-23!GO:0005830;cytosolic ribosome (sensu Eukaryota);3.13186808354779e-22!GO:0022402;cell cycle process;1.00211351774527e-21!GO:0051641;cellular localization;1.58912246351335e-21!GO:0051649;establishment of cellular localization;1.69774350736127e-21!GO:0005681;spliceosome;1.92455204178046e-21!GO:0000278;mitotic cell cycle;2.32127865676844e-20!GO:0017076;purine nucleotide binding;2.32726702905726e-20!GO:0005524;ATP binding;2.32726702905726e-20!GO:0048770;pigment granule;2.41326603547256e-20!GO:0042470;melanosome;2.41326603547256e-20!GO:0032553;ribonucleotide binding;6.34209858938657e-20!GO:0032555;purine ribonucleotide binding;6.34209858938657e-20!GO:0030554;adenyl nucleotide binding;7.69369266554057e-20!GO:0044451;nucleoplasm part;8.89119257681461e-20!GO:0032559;adenyl ribonucleotide binding;1.17481753539631e-19!GO:0006974;response to DNA damage stimulus;6.54594039108334e-19!GO:0006457;protein folding;4.40187447213278e-18!GO:0005794;Golgi apparatus;3.50058812634768e-17!GO:0005740;mitochondrial envelope;4.22772275067702e-17!GO:0016874;ligase activity;5.54051202725517e-17!GO:0044445;cytosolic part;1.60304725049736e-16!GO:0000087;M phase of mitotic cell cycle;1.69828519777357e-16!GO:0031966;mitochondrial membrane;1.87832437221116e-16!GO:0007067;mitosis;2.11474882884746e-16!GO:0019866;organelle inner membrane;4.0884585657517e-16!GO:0042175;nuclear envelope-endoplasmic reticulum network;4.14093361218537e-16!GO:0005730;nucleolus;4.43161142854486e-16!GO:0022403;cell cycle phase;4.73706599397633e-16!GO:0016887;ATPase activity;5.57972912645164e-16!GO:0006119;oxidative phosphorylation;7.70982533551894e-16!GO:0006281;DNA repair;8.19439310459686e-16!GO:0042623;ATPase activity, coupled;9.48173066094972e-16!GO:0005694;chromosome;1.05611657579437e-15!GO:0016070;RNA metabolic process;1.21107587961523e-15!GO:0005789;endoplasmic reticulum membrane;2.34560906896552e-15!GO:0048193;Golgi vesicle transport;9.49569914226474e-15!GO:0043285;biopolymer catabolic process;1.80127050987233e-14!GO:0005635;nuclear envelope;3.22359544207667e-14!GO:0015934;large ribosomal subunit;4.25929012739034e-14!GO:0005743;mitochondrial inner membrane;5.1450397729618e-14!GO:0015935;small ribosomal subunit;6.18568611207243e-14!GO:0004386;helicase activity;6.85050483455277e-14!GO:0051301;cell division;7.60196159651864e-14!GO:0009719;response to endogenous stimulus;7.94306385088146e-14!GO:0031965;nuclear membrane;8.11897560206018e-14!GO:0051276;chromosome organization and biogenesis;1.14918625124991e-13!GO:0005793;ER-Golgi intermediate compartment;1.14918625124991e-13!GO:0000279;M phase;1.14918625124991e-13!GO:0000502;proteasome complex (sensu Eukaryota);1.40250030406981e-13!GO:0044427;chromosomal part;1.50491981318704e-13!GO:0022618;protein-RNA complex assembly;1.70889252151152e-13!GO:0008134;transcription factor binding;2.30157451574767e-13!GO:0044265;cellular macromolecule catabolic process;2.32987954813186e-13!GO:0008135;translation factor activity, nucleic acid binding;2.48490870310637e-13!GO:0051082;unfolded protein binding;3.02304392940362e-13!GO:0009057;macromolecule catabolic process;3.18096794559076e-13!GO:0044453;nuclear membrane part;3.4843961920721e-13!GO:0006260;DNA replication;4.70182444490201e-13!GO:0031980;mitochondrial lumen;5.05733766796511e-13!GO:0005759;mitochondrial matrix;5.05733766796511e-13!GO:0006605;protein targeting;5.24306540189046e-13!GO:0030163;protein catabolic process;7.47460734975199e-13!GO:0051603;proteolysis involved in cellular protein catabolic process;8.09119482742769e-13!GO:0019941;modification-dependent protein catabolic process;1.77681449557358e-12!GO:0043632;modification-dependent macromolecule catabolic process;1.77681449557358e-12!GO:0044257;cellular protein catabolic process;1.82000291125118e-12!GO:0006511;ubiquitin-dependent protein catabolic process;1.85607141725758e-12!GO:0044455;mitochondrial membrane part;2.35525984730388e-12!GO:0008026;ATP-dependent helicase activity;5.56513413212832e-12!GO:0006512;ubiquitin cycle;6.83442031755692e-12!GO:0016192;vesicle-mediated transport;7.00104955382614e-12!GO:0000398;nuclear mRNA splicing, via spliceosome;7.05445880846288e-12!GO:0000375;RNA splicing, via transesterification reactions;7.05445880846288e-12!GO:0000377;RNA splicing, via transesterification reactions with bulged adenosine as nucleophile;7.05445880846288e-12!GO:0005843;cytosolic small ribosomal subunit (sensu Eukaryota);9.67117764906875e-12!GO:0051186;cofactor metabolic process;1.53606445957881e-11!GO:0042254;ribosome biogenesis and assembly;2.48255153263519e-11!GO:0043412;biopolymer modification;4.08244686207179e-11!GO:0005842;cytosolic large ribosomal subunit (sensu Eukaryota);7.07606736846296e-11!GO:0051726;regulation of cell cycle;1.05763835119334e-10!GO:0005788;endoplasmic reticulum lumen;1.06062686214628e-10!GO:0000074;regulation of progression through cell cycle;1.18824269083986e-10!GO:0006399;tRNA metabolic process;1.2099797610714e-10!GO:0016604;nuclear body;1.21495767137374e-10!GO:0006461;protein complex assembly;1.26225430333363e-10!GO:0005746;mitochondrial respiratory chain;1.30734888305992e-10!GO:0044248;cellular catabolic process;1.4312495554323e-10!GO:0016655;oxidoreductase activity, acting on NADH or NADPH, quinone or similar compound as acceptor;1.46491691888603e-10!GO:0003743;translation initiation factor activity;1.75734966734705e-10!GO:0006913;nucleocytoplasmic transport;2.4266528360954e-10!GO:0006325;establishment and/or maintenance of chromatin architecture;3.047572511312e-10!GO:0016876;ligase activity, forming aminoacyl-tRNA and related compounds;3.78737071621097e-10!GO:0004812;aminoacyl-tRNA ligase activity;3.78737071621097e-10!GO:0016875;ligase activity, forming carbon-oxygen bonds;3.78737071621097e-10!GO:0051169;nuclear transport;5.25008936557908e-10!GO:0015630;microtubule cytoskeleton;5.4665016234784e-10!GO:0043038;amino acid activation;6.30286281392117e-10!GO:0006418;tRNA aminoacylation for protein translation;6.30286281392117e-10!GO:0043039;tRNA aminoacylation;6.30286281392117e-10!GO:0006323;DNA packaging;8.69146539648797e-10!GO:0005643;nuclear pore;9.6452006451882e-10!GO:0006464;protein modification process;1.57283172834582e-09!GO:0016787;hydrolase activity;1.95800829325055e-09!GO:0050136;NADH dehydrogenase (quinone) activity;2.1440744722339e-09!GO:0003954;NADH dehydrogenase activity;2.1440744722339e-09!GO:0008137;NADH dehydrogenase (ubiquinone) activity;2.1440744722339e-09!GO:0016607;nuclear speck;2.45561506862878e-09!GO:0016651;oxidoreductase activity, acting on NADH or NADPH;2.66039004690569e-09!GO:0008565;protein transporter activity;4.13530679650578e-09!GO:0003712;transcription cofactor activity;4.26404880066032e-09!GO:0006403;RNA localization;5.87749064095459e-09!GO:0006732;coenzyme metabolic process;7.03565168175413e-09!GO:0050657;nucleic acid transport;9.50205572896623e-09!GO:0051236;establishment of RNA localization;9.50205572896623e-09!GO:0050658;RNA transport;9.50205572896623e-09!GO:0009259;ribonucleotide metabolic process;1.14442138204712e-08!GO:0006888;ER to Golgi vesicle-mediated transport;1.36972584243568e-08!GO:0006413;translational initiation;1.39277202831261e-08!GO:0046930;pore complex;2.19583730260993e-08!GO:0006446;regulation of translational initiation;3.1062902688618e-08!GO:0042775;organelle ATP synthesis coupled electron transport;3.37506418827114e-08!GO:0042773;ATP synthesis coupled electron transport;3.37506418827114e-08!GO:0016879;ligase activity, forming carbon-nitrogen bonds;3.81921873569947e-08!GO:0065002;intracellular protein transport across a membrane;3.87942160280675e-08!GO:0030964;NADH dehydrogenase complex (quinone);4.21721274922295e-08!GO:0045271;respiratory chain complex I;4.21721274922295e-08!GO:0005747;mitochondrial respiratory chain complex I;4.21721274922295e-08!GO:0044431;Golgi apparatus part;4.25488210491053e-08!GO:0043566;structure-specific DNA binding;4.34573629817366e-08!GO:0048523;negative regulation of cellular process;4.76805284786551e-08!GO:0008639;small protein conjugating enzyme activity;4.76805284786551e-08!GO:0004842;ubiquitin-protein ligase activity;5.35328894069624e-08!GO:0006163;purine nucleotide metabolic process;5.37600532095087e-08!GO:0005761;mitochondrial ribosome;5.37600532095087e-08!GO:0000313;organellar ribosome;5.37600532095087e-08!GO:0006120;mitochondrial electron transport, NADH to ubiquinone;8.57107508158894e-08!GO:0050794;regulation of cellular process;8.88819021124106e-08!GO:0009150;purine ribonucleotide metabolic process;9.30698603725218e-08!GO:0009260;ribonucleotide biosynthetic process;9.5095022784609e-08!GO:0046961;hydrogen ion transporting ATPase activity, rotational mechanism;9.96726447272322e-08!GO:0005819;spindle;1.02591912787975e-07!GO:0065004;protein-DNA complex assembly;1.19598634802944e-07!GO:0030120;vesicle coat;1.22811774673715e-07!GO:0030662;coated vesicle membrane;1.22811774673715e-07!GO:0006164;purine nucleotide biosynthetic process;1.51480755066823e-07!GO:0043687;post-translational protein modification;1.59447167880335e-07!GO:0006333;chromatin assembly or disassembly;1.6229452040424e-07!GO:0019787;small conjugating protein ligase activity;1.75917009415003e-07!GO:0046933;hydrogen ion transporting ATP synthase activity, rotational mechanism;1.86706680830119e-07!GO:0048475;coated membrane;1.88963954416367e-07!GO:0030117;membrane coat;1.88963954416367e-07!GO:0005773;vacuole;2.16873000753929e-07!GO:0051028;mRNA transport;2.29736887287565e-07!GO:0009152;purine ribonucleotide biosynthetic process;2.4743986381882e-07!GO:0009055;electron carrier activity;2.67376268148377e-07!GO:0000785;chromatin;3.90817465660219e-07!GO:0005813;centrosome;4.68075868854184e-07!GO:0003697;single-stranded DNA binding;5.06234185243616e-07!GO:0015986;ATP synthesis coupled proton transport;5.17794144775699e-07!GO:0015985;energy coupled proton transport, down electrochemical gradient;5.17794144775699e-07!GO:0017038;protein import;5.95169936676527e-07!GO:0009060;aerobic respiration;6.11692344357856e-07!GO:0006364;rRNA processing;6.31271103677672e-07!GO:0031988;membrane-bound vesicle;6.93555973785115e-07!GO:0005815;microtubule organizing center;7.44807631551562e-07!GO:0012501;programmed cell death;7.97789656417034e-07!GO:0016881;acid-amino acid ligase activity;1.0397886301158e-06!GO:0016023;cytoplasmic membrane-bound vesicle;1.09483088005942e-06!GO:0005768;endosome;1.16793251480349e-06!GO:0009056;catabolic process;1.1987893652569e-06!GO:0015931;nucleobase, nucleoside, nucleotide and nucleic acid transport;1.23578382503804e-06!GO:0006915;apoptosis;1.23632101293726e-06!GO:0009199;ribonucleoside triphosphate metabolic process;1.23876574917491e-06!GO:0048519;negative regulation of biological process;1.32217294388376e-06!GO:0007051;spindle organization and biogenesis;1.36163396405121e-06!GO:0055086;nucleobase, nucleoside and nucleotide metabolic process;1.41261305324909e-06!GO:0016072;rRNA metabolic process;1.43275049121361e-06!GO:0045333;cellular respiration;1.46616327414742e-06!GO:0003724;RNA helicase activity;1.48600055790788e-06!GO:0009141;nucleoside triphosphate metabolic process;1.6735528204149e-06!GO:0000323;lytic vacuole;1.6735528204149e-06!GO:0005764;lysosome;1.6735528204149e-06!GO:0046034;ATP metabolic process;1.72390845095277e-06!GO:0006099;tricarboxylic acid cycle;1.83177888071665e-06!GO:0046356;acetyl-CoA catabolic process;1.83177888071665e-06!GO:0051187;cofactor catabolic process;1.94997518521184e-06!GO:0016740;transferase activity;2.01224687051837e-06!GO:0006261;DNA-dependent DNA replication;2.01700000734302e-06!GO:0007010;cytoskeleton organization and biogenesis;2.28553776165085e-06!GO:0016568;chromatin modification;2.33097742068406e-06!GO:0009205;purine ribonucleoside triphosphate metabolic process;2.40793071122201e-06!GO:0009144;purine nucleoside triphosphate metabolic process;2.40793071122201e-06!GO:0019829;cation-transporting ATPase activity;2.64868684082839e-06!GO:0000139;Golgi membrane;2.75143416444203e-06!GO:0006366;transcription from RNA polymerase II promoter;2.77204727946575e-06!GO:0008219;cell death;3.08167312410091e-06!GO:0016265;death;3.08167312410091e-06!GO:0009109;coenzyme catabolic process;3.26624710179313e-06!GO:0005798;Golgi-associated vesicle;3.85508946680578e-06!GO:0000775;chromosome, pericentric region;4.01369589538727e-06!GO:0031982;vesicle;4.27359706517938e-06!GO:0008094;DNA-dependent ATPase activity;4.47933678708221e-06!GO:0006334;nucleosome assembly;4.70451137824591e-06!GO:0051789;response to protein stimulus;5.64044325854988e-06!GO:0006986;response to unfolded protein;5.64044325854988e-06!GO:0005667;transcription factor complex;5.78650536363314e-06!GO:0009142;nucleoside triphosphate biosynthetic process;6.43767657312147e-06!GO:0009201;ribonucleoside triphosphate biosynthetic process;6.43767657312147e-06!GO:0006084;acetyl-CoA metabolic process;6.68183462305348e-06!GO:0031410;cytoplasmic vesicle;6.68183462305348e-06!GO:0015078;hydrogen ion transmembrane transporter activity;6.81848214234328e-06!GO:0031497;chromatin assembly;7.10193599654335e-06!GO:0030532;small nuclear ribonucleoprotein complex;7.54450798128944e-06!GO:0006754;ATP biosynthetic process;7.7767133055682e-06!GO:0006753;nucleoside phosphate metabolic process;7.7767133055682e-06!GO:0051188;cofactor biosynthetic process;8.19743619172485e-06!GO:0008654;phospholipid biosynthetic process;8.3393476849214e-06!GO:0043623;cellular protein complex assembly;9.01251855883018e-06!GO:0031324;negative regulation of cellular metabolic process;1.06850548654913e-05!GO:0043123;positive regulation of I-kappaB kinase/NF-kappaB cascade;1.07208361843609e-05!GO:0009117;nucleotide metabolic process;1.27954060494963e-05!GO:0009206;purine ribonucleoside triphosphate biosynthetic process;1.29566787620128e-05!GO:0009145;purine nucleoside triphosphate biosynthetic process;1.29566787620128e-05!GO:0016469;proton-transporting two-sector ATPase complex;1.32584803913866e-05!GO:0051170;nuclear import;1.51466182191714e-05!GO:0006613;cotranslational protein targeting to membrane;1.72426124193434e-05!GO:0016591;DNA-directed RNA polymerase II, holoenzyme;1.91662848300927e-05!GO:0006606;protein import into nucleus;2.12677042037045e-05!GO:0016779;nucleotidyltransferase activity;2.19493494807883e-05!GO:0051329;interphase of mitotic cell cycle;2.31035464253963e-05!GO:0000075;cell cycle checkpoint;2.39773394989897e-05!GO:0019899;enzyme binding;2.59604681535513e-05!GO:0006752;group transfer coenzyme metabolic process;2.67270026074368e-05!GO:0044440;endosomal part;2.68261735392908e-05!GO:0010008;endosome membrane;2.68261735392908e-05!GO:0031202;RNA splicing factor activity, transesterification mechanism;2.75984181313415e-05!GO:0051325;interphase;2.98442139352638e-05!GO:0030867;rough endoplasmic reticulum membrane;3.1037606751814e-05!GO:0045786;negative regulation of progression through cell cycle;3.30396612954564e-05!GO:0043122;regulation of I-kappaB kinase/NF-kappaB cascade;3.46601868396844e-05!GO:0000151;ubiquitin ligase complex;3.46792095253063e-05!GO:0016853;isomerase activity;3.53490809406869e-05!GO:0000245;spliceosome assembly;3.92920926128477e-05!GO:0005839;proteasome core complex (sensu Eukaryota);4.30844135370114e-05!GO:0051246;regulation of protein metabolic process;4.41736922345222e-05!GO:0003755;peptidyl-prolyl cis-trans isomerase activity;4.49106282766662e-05!GO:0030036;actin cytoskeleton organization and biogenesis;4.56832905128662e-05!GO:0045259;proton-transporting ATP synthase complex;5.95586257606042e-05!GO:0050789;regulation of biological process;6.42095863630537e-05!GO:0009892;negative regulation of metabolic process;6.76204427172485e-05!GO:0003690;double-stranded DNA binding;6.8023129730728e-05!GO:0003924;GTPase activity;6.83231624107266e-05!GO:0033116;ER-Golgi intermediate compartment membrane;7.09361308088485e-05!GO:0031252;leading edge;7.10145101401265e-05!GO:0016859;cis-trans isomerase activity;7.21469187085037e-05!GO:0016772;transferase activity, transferring phosphorus-containing groups;7.31849207882894e-05!GO:0016564;transcription repressor activity;7.90937970048605e-05!GO:0003714;transcription corepressor activity;8.95053138959986e-05!GO:0030133;transport vesicle;9.02531809198182e-05!GO:0003678;DNA helicase activity;9.03502750589798e-05!GO:0016491;oxidoreductase activity;9.11952999332926e-05!GO:0016363;nuclear matrix;9.19880953737999e-05!GO:0006793;phosphorus metabolic process;9.19880953737999e-05!GO:0006796;phosphate metabolic process;9.19880953737999e-05!GO:0032446;protein modification by small protein conjugation;9.88695778863172e-05!GO:0045934;negative regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;0.000104115668167896!GO:0005905;coated pit;0.000111442051491577!GO:0008186;RNA-dependent ATPase activity;0.000117010323639608!GO:0009108;coenzyme biosynthetic process;0.000118180134701559!GO:0016049;cell growth;0.000130648216049806!GO:0003713;transcription coactivator activity;0.000138565447645571!GO:0008361;regulation of cell size;0.000138565447645571!GO:0016567;protein ubiquitination;0.000138728735414641!GO:0004576;oligosaccharyl transferase activity;0.000138728735414641!GO:0015077;monovalent inorganic cation transmembrane transporter activity;0.000138938801244182!GO:0005874;microtubule;0.000139764925424997!GO:0005770;late endosome;0.000149240628960835!GO:0016310;phosphorylation;0.000149771859687728!GO:0051168;nuclear export;0.000172407508261823!GO:0004298;threonine endopeptidase activity;0.000176563043071604!GO:0007249;I-kappaB kinase/NF-kappaB cascade;0.000192629922794964!GO:0005657;replication fork;0.000202076911815623!GO:0019843;rRNA binding;0.00020671415977971!GO:0043067;regulation of programmed cell death;0.000213222929188333!GO:0015405;P-P-bond-hydrolysis-driven transmembrane transporter activity;0.000214587956226983!GO:0015399;primary active transmembrane transporter activity;0.000214587956226983!GO:0042981;regulation of apoptosis;0.000221412906039761!GO:0006916;anti-apoptosis;0.000227284561374339!GO:0008250;oligosaccharyl transferase complex;0.00023391414815922!GO:0042625;ATPase activity, coupled to transmembrane movement of ions;0.000241335125225293!GO:0003684;damaged DNA binding;0.0002413507505127!GO:0004579;dolichyl-diphosphooligosaccharide-protein glycotransferase activity;0.0002413507505127!GO:0006302;double-strand break repair;0.000253121824907216!GO:0006612;protein targeting to membrane;0.000254431090430468!GO:0006310;DNA recombination;0.00026059090754014!GO:0043069;negative regulation of programmed cell death;0.000267336573110234!GO:0000776;kinetochore;0.000271519039097947!GO:0044262;cellular carbohydrate metabolic process;0.000297758839417869!GO:0051427;hormone receptor binding;0.000320368885347606!GO:0016563;transcription activator activity;0.000339283039291206!GO:0015980;energy derivation by oxidation of organic compounds;0.000346910408120295!GO:0004004;ATP-dependent RNA helicase activity;0.000353901990891791!GO:0008092;cytoskeletal protein binding;0.000373005265642855!GO:0046474;glycerophospholipid biosynthetic process;0.000374815348473499!GO:0046489;phosphoinositide biosynthetic process;0.000387808599504566!GO:0001558;regulation of cell growth;0.000429708628950948!GO:0031968;organelle outer membrane;0.000442671628885093!GO:0045454;cell redox homeostasis;0.000443750040221032!GO:0007052;mitotic spindle organization and biogenesis;0.000460265247123398!GO:0000059;protein import into nucleus, docking;0.000465619039663353!GO:0030029;actin filament-based process;0.00046877416736423!GO:0030530;heterogeneous nuclear ribonucleoprotein complex;0.000478170254674738!GO:0043066;negative regulation of apoptosis;0.000492524314552433!GO:0019867;outer membrane;0.000534441324322929!GO:0005048;signal sequence binding;0.000569692093922173!GO:0051252;regulation of RNA metabolic process;0.000579695230310092!GO:0035257;nuclear hormone receptor binding;0.000604694932132605!GO:0043284;biopolymer biosynthetic process;0.000609564912506252!GO:0030134;ER to Golgi transport vesicle;0.000612569652286293!GO:0043021;ribonucleoprotein binding;0.000619851962203021!GO:0006414;translational elongation;0.000628398039634812!GO:0007059;chromosome segregation;0.000684147144157037!GO:0005769;early endosome;0.000685295532503125!GO:0016481;negative regulation of transcription;0.000698016379506839!GO:0030663;COPI coated vesicle membrane;0.000713978697181983!GO:0030126;COPI vesicle coat;0.000713978697181983!GO:0005791;rough endoplasmic reticulum;0.000751999894911007!GO:0003729;mRNA binding;0.000753093742109644!GO:0018196;peptidyl-asparagine modification;0.000804218980914701!GO:0018279;protein amino acid N-linked glycosylation via asparagine;0.000804218980914701!GO:0005885;Arp2/3 protein complex;0.000965446499055246!GO:0031124;mRNA 3'-end processing;0.00103559336065581!GO:0003682;chromatin binding;0.00109821865064301!GO:0033178;proton-transporting two-sector ATPase complex, catalytic domain;0.00121693193312022!GO:0004177;aminopeptidase activity;0.00122458343556951!GO:0042626;ATPase activity, coupled to transmembrane movement of substances;0.00133372985005044!GO:0043492;ATPase activity, coupled to movement of substances;0.00138671108019304!GO:0007093;mitotic cell cycle checkpoint;0.00146991135278905!GO:0019222;regulation of metabolic process;0.00148302292515607!GO:0006091;generation of precursor metabolites and energy;0.00152349500766095!GO:0051052;regulation of DNA metabolic process;0.00153557348733628!GO:0030137;COPI-coated vesicle;0.00163007761746967!GO:0016820;hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances;0.00173572482031513!GO:0030127;COPII vesicle coat;0.00179528208189829!GO:0012507;ER to Golgi transport vesicle membrane;0.00179528208189829!GO:0045261;proton-transporting ATP synthase complex, catalytic core F(1);0.00194998988529459!GO:0006357;regulation of transcription from RNA polymerase II promoter;0.00196874687633283!GO:0006891;intra-Golgi vesicle-mediated transport;0.00196874687633283!GO:0048471;perinuclear region of cytoplasm;0.00202621614305128!GO:0000226;microtubule cytoskeleton organization and biogenesis;0.00203941428236758!GO:0004527;exonuclease activity;0.0020734011819422!GO:0030176;integral to endoplasmic reticulum membrane;0.00209739714141989!GO:0005637;nuclear inner membrane;0.00213252431749111!GO:0016197;endosome transport;0.00213252431749111!GO:0046467;membrane lipid biosynthetic process;0.00215652582883015!GO:0015631;tubulin binding;0.00220016213670513!GO:0051920;peroxiredoxin activity;0.00224340136143255!GO:0006402;mRNA catabolic process;0.00224919900382699!GO:0008047;enzyme activator activity;0.00226533049836936!GO:0005852;eukaryotic translation initiation factor 3 complex;0.00242688423109116!GO:0003899;DNA-directed RNA polymerase activity;0.00243204085749841!GO:0000079;regulation of cyclin-dependent protein kinase activity;0.00243561521283054!GO:0006950;response to stress;0.00246652900882437!GO:0005762;mitochondrial large ribosomal subunit;0.00256240548848632!GO:0000315;organellar large ribosomal subunit;0.00256240548848632!GO:0007040;lysosome organization and biogenesis;0.00260760052226133!GO:0008610;lipid biosynthetic process;0.00262501761471256!GO:0007088;regulation of mitosis;0.00273542080502313!GO:0004003;ATP-dependent DNA helicase activity;0.00273950181662817!GO:0005753;mitochondrial proton-transporting ATP synthase complex;0.00274165467183299!GO:0000922;spindle pole;0.00274165467183299!GO:0008022;protein C-terminus binding;0.00277717669030354!GO:0019798;procollagen-proline dioxygenase activity;0.00282240056491131!GO:0006509;membrane protein ectodomain proteolysis;0.00285076519040597!GO:0033619;membrane protein proteolysis;0.00285076519040597!GO:0007005;mitochondrion organization and biogenesis;0.00288518940801396!GO:0016627;oxidoreductase activity, acting on the CH-CH group of donors;0.00288518940801396!GO:0000910;cytokinesis;0.00288518940801396!GO:0009165;nucleotide biosynthetic process;0.00332495958365654!GO:0030132;clathrin coat of coated pit;0.00344381850540718!GO:0006497;protein amino acid lipidation;0.00348838692098696!GO:0006289;nucleotide-excision repair;0.00361244576295129!GO:0044452;nucleolar part;0.00361244576295129!GO:0005876;spindle microtubule;0.00364241077324547!GO:0048522;positive regulation of cellular process;0.00366204090472791!GO:0007033;vacuole organization and biogenesis;0.00374060927062024!GO:0016706;oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors;0.00383049369598024!GO:0030658;transport vesicle membrane;0.00387122931779641!GO:0042802;identical protein binding;0.00387122931779641!GO:0005741;mitochondrial outer membrane;0.00390235287127542!GO:0065007;biological regulation;0.00407463609114009!GO:0005838;proteasome regulatory particle (sensu Eukaryota);0.00407930043831216!GO:0016281;eukaryotic translation initiation factor 4F complex;0.00413692500053387!GO:0006650;glycerophospholipid metabolic process;0.0041961986958692!GO:0007017;microtubule-based process;0.00427229029132356!GO:0006506;GPI anchor biosynthetic process;0.00462952500632832!GO:0016862;intramolecular oxidoreductase activity, interconverting keto- and enol-groups;0.00464598611783598!GO:0000786;nucleosome;0.00488522441511351!GO:0031543;peptidyl-proline dioxygenase activity;0.00492269506541471!GO:0006505;GPI anchor metabolic process;0.00514080030116311!GO:0008033;tRNA processing;0.00530460438939465!GO:0006892;post-Golgi vesicle-mediated transport;0.00539814572742334!GO:0004674;protein serine/threonine kinase activity;0.00545966864128679!GO:0048500;signal recognition particle;0.00556341190585096!GO:0065009;regulation of a molecular function;0.00568704958999709!GO:0017166;vinculin binding;0.00568704958999709!GO:0046519;sphingoid metabolic process;0.00583639054633418!GO:0030118;clathrin coat;0.00598295929495993!GO:0006378;mRNA polyadenylation;0.00622333639263157!GO:0007050;cell cycle arrest;0.00648761827830008!GO:0050662;coenzyme binding;0.0066427274138027!GO:0032508;DNA duplex unwinding;0.00684981907206126!GO:0032392;DNA geometric change;0.00684981907206126!GO:0031123;RNA 3'-end processing;0.00700623441722388!GO:0000082;G1/S transition of mitotic cell cycle;0.00725680716208944!GO:0016126;sterol biosynthetic process;0.00767579373909288!GO:0001726;ruffle;0.00777872201575426!GO:0016679;oxidoreductase activity, acting on diphenols and related substances as donors;0.0078345052934808!GO:0016681;oxidoreductase activity, acting on diphenols and related substances as donors, cytochrome as acceptor;0.0078345052934808!GO:0008121;ubiquinol-cytochrome-c reductase activity;0.0078345052934808!GO:0030521;androgen receptor signaling pathway;0.00796124598231789!GO:0005525;GTP binding;0.0079741662474357!GO:0000049;tRNA binding;0.00814193397185035!GO:0007243;protein kinase cascade;0.00850556133681059!GO:0030660;Golgi-associated vesicle membrane;0.00860130593504985!GO:0042158;lipoprotein biosynthetic process;0.00882181049841978!GO:0008139;nuclear localization sequence binding;0.00883477838233691!GO:0051539;4 iron, 4 sulfur cluster binding;0.00888152553518556!GO:0032200;telomere organization and biogenesis;0.00891104476949637!GO:0000723;telomere maintenance;0.00891104476949637!GO:0031418;L-ascorbic acid binding;0.00910368994446544!GO:0006818;hydrogen transport;0.00926398179565678!GO:0003923;GPI-anchor transamidase activity;0.00933415976799789!GO:0016255;attachment of GPI anchor to protein;0.00933415976799789!GO:0042765;GPI-anchor transamidase complex;0.00933415976799789!GO:0008312;7S RNA binding;0.00966608139090082!GO:0030384;phosphoinositide metabolic process;0.00990054339902116!GO:0006405;RNA export from nucleus;0.00991294796167615!GO:0005684;U2-dependent spliceosome;0.0100324698188487!GO:0015992;proton transport;0.0100871456032716!GO:0051045;negative regulation of membrane protein ectodomain proteolysis;0.0103306648103028!GO:0051043;regulation of membrane protein ectodomain proteolysis;0.0103306648103028!GO:0006401;RNA catabolic process;0.0103962078162711!GO:0003746;translation elongation factor activity;0.0108281389720749!GO:0006614;SRP-dependent cotranslational protein targeting to membrane;0.0108466713546087!GO:0045047;protein targeting to ER;0.0108466713546087!GO:0005774;vacuolar membrane;0.0111378169144471!GO:0006268;DNA unwinding during replication;0.0111568287733585!GO:0006890;retrograde vesicle-mediated transport, Golgi to ER;0.0111568287733585!GO:0043488;regulation of mRNA stability;0.0117302140970549!GO:0043487;regulation of RNA stability;0.0117302140970549!GO:0003711;transcription elongation regulator activity;0.0123421473979629!GO:0030659;cytoplasmic vesicle membrane;0.012503205127596!GO:0006383;transcription from RNA polymerase III promoter;0.0126271083616682!GO:0030032;lamellipodium biogenesis;0.0131216940751483!GO:0031072;heat shock protein binding;0.0133106947974047!GO:0006672;ceramide metabolic process;0.0134865513149385!GO:0005832;chaperonin-containing T-complex;0.0139549219616032!GO:0006275;regulation of DNA replication;0.0139735928737591!GO:0001527;microfibril;0.0145984670313347!GO:0009112;nucleobase metabolic process;0.0148767589614277!GO:0006984;ER-nuclear signaling pathway;0.015138139976276!GO:0035258;steroid hormone receptor binding;0.0152832179262692!GO:0003756;protein disulfide isomerase activity;0.0156122658594964!GO:0016864;intramolecular oxidoreductase activity, transposing S-S bonds;0.0156122658594964!GO:0019752;carboxylic acid metabolic process;0.0161295055541471!GO:0044420;extracellular matrix part;0.0166438913836428!GO:0005786;signal recognition particle, endoplasmic reticulum targeting;0.0173911285909231!GO:0046483;heterocycle metabolic process;0.0174266108202296!GO:0007041;lysosomal transport;0.0175843309173227!GO:0031625;ubiquitin protein ligase binding;0.0175843309173227!GO:0016044;membrane organization and biogenesis;0.0176184649636933!GO:0005862;muscle thin filament tropomyosin;0.0177240391627372!GO:0030041;actin filament polymerization;0.018232726435052!GO:0040008;regulation of growth;0.0183716462700515!GO:0030433;ER-associated protein catabolic process;0.019371782209957!GO:0006515;misfolded or incompletely synthesized protein catabolic process;0.019371782209957!GO:0006284;base-excision repair;0.019417457310934!GO:0000030;mannosyltransferase activity;0.0194238391170841!GO:0016408;C-acyltransferase activity;0.0194454187018406!GO:0006082;organic acid metabolic process;0.0194968973752454!GO:0005096;GTPase activator activity;0.0196087363706474!GO:0051271;negative regulation of cell motility;0.0196351117422779!GO:0004518;nuclease activity;0.0197028344171433!GO:0044433;cytoplasmic vesicle part;0.0197565346126355!GO:0031529;ruffle organization and biogenesis;0.0198617539924851!GO:0007034;vacuolar transport;0.0203154441026043!GO:0000781;chromosome, telomeric region;0.0207115407176535!GO:0012506;vesicle membrane;0.0215663584118949!GO:0000070;mitotic sister chromatid segregation;0.0219948064286337!GO:0007030;Golgi organization and biogenesis;0.0223817251639846!GO:0000314;organellar small ribosomal subunit;0.0229998360418803!GO:0005763;mitochondrial small ribosomal subunit;0.0229998360418803!GO:0032561;guanyl ribonucleotide binding;0.0232178122527404!GO:0019001;guanyl nucleotide binding;0.0232178122527404!GO:0000287;magnesium ion binding;0.0232432921707676!GO:0000819;sister chromatid segregation;0.0232432921707676!GO:0031901;early endosome membrane;0.0233785893125245!GO:0000339;RNA cap binding;0.0234243574689325!GO:0006352;transcription initiation;0.0235653910361341!GO:0016584;nucleosome positioning;0.0241830417279579!GO:0030027;lamellipodium;0.0243913430797264!GO:0044437;vacuolar part;0.0251637077373104!GO:0043161;proteasomal ubiquitin-dependent protein catabolic process;0.0256417361846967!GO:0016780;phosphotransferase activity, for other substituted phosphate groups;0.0256637402689266!GO:0008180;signalosome;0.0260803372607981!GO:0022408;negative regulation of cell-cell adhesion;0.0261952026988055!GO:0006541;glutamine metabolic process;0.0265988038637333!GO:0030119;AP-type membrane coat adaptor complex;0.0266266149391663!GO:0051287;NAD binding;0.0266524645104277!GO:0030149;sphingolipid catabolic process;0.0271440272249417!GO:0051128;regulation of cellular component organization and biogenesis;0.0272408665682185!GO:0022890;inorganic cation transmembrane transporter activity;0.0282097639043753!GO:0043022;ribosome binding;0.0286469241031765!GO:0031323;regulation of cellular metabolic process;0.0291988337464681!GO:0045263;proton-transporting ATP synthase complex, coupling factor F(o);0.0294006242398171!GO:0033177;proton-transporting two-sector ATPase complex, proton-transporting domain;0.0294006242398171!GO:0045045;secretory pathway;0.0295752501636823!GO:0005869;dynactin complex;0.0306884746152043!GO:0008484;sulfuric ester hydrolase activity;0.0307046875211527!GO:0000307;cyclin-dependent protein kinase holoenzyme complex;0.030962629603118!GO:0030131;clathrin adaptor complex;0.0315826860450336!GO:0003779;actin binding;0.031959342295806!GO:0006379;mRNA cleavage;0.0321666956394979!GO:0016765;transferase activity, transferring alkyl or aryl (other than methyl) groups;0.0322077212479709!GO:0004656;procollagen-proline 4-dioxygenase activity;0.0326302727548217!GO:0031545;peptidyl-proline 4-dioxygenase activity;0.0326302727548217!GO:0051540;metal cluster binding;0.0329540637146399!GO:0051536;iron-sulfur cluster binding;0.0329540637146399!GO:0030518;steroid hormone receptor signaling pathway;0.032961289145554!GO:0008475;procollagen-lysine 5-dioxygenase activity;0.0331831668437174!GO:0006376;mRNA splice site selection;0.0331831668437174!GO:0000389;nuclear mRNA 3'-splice site recognition;0.0331831668437174!GO:0030145;manganese ion binding;0.0336750146608985!GO:0004563;beta-N-acetylhexosaminidase activity;0.0338210316639338!GO:0000792;heterochromatin;0.0338894664673034!GO:0040029;regulation of gene expression, epigenetic;0.0344376211263471!GO:0050790;regulation of catalytic activity;0.034556253487667!GO:0005765;lysosomal membrane;0.0345667750235929!GO:0008154;actin polymerization and/or depolymerization;0.0346081723530845!GO:0006520;amino acid metabolic process;0.0346681544191716!GO:0006611;protein export from nucleus;0.0350491068984455!GO:0005784;translocon complex;0.0350491068984455!GO:0006144;purine base metabolic process;0.0355388069371797!GO:0006626;protein targeting to mitochondrion;0.0356521617591412!GO:0035267;NuA4 histone acetyltransferase complex;0.0362951384601474!GO:0007160;cell-matrix adhesion;0.0365386657014981!GO:0033559;unsaturated fatty acid metabolic process;0.0367431518952227!GO:0006636;unsaturated fatty acid biosynthetic process;0.0367431518952227!GO:0006595;polyamine metabolic process;0.0368231520565387!GO:0007346;regulation of progression through mitotic cell cycle;0.0370097746918557!GO:0016741;transferase activity, transferring one-carbon groups;0.0376358810857665!GO:0005856;cytoskeleton;0.0376358810857665!GO:0031902;late endosome membrane;0.0376358810857665!GO:0006643;membrane lipid metabolic process;0.0388862247532263!GO:0043681;protein import into mitochondrion;0.0388862247532263!GO:0048037;cofactor binding;0.0388902884399211!GO:0004287;prolyl oligopeptidase activity;0.0393068808949325!GO:0048487;beta-tubulin binding;0.0400027287758298!GO:0050681;androgen receptor binding;0.0400027287758298!GO:0005581;collagen;0.0402042016164586!GO:0008168;methyltransferase activity;0.0405922614434742!GO:0000152;nuclear ubiquitin ligase complex;0.0410841687897146!GO:0031589;cell-substrate adhesion;0.0411018413749896!GO:0006607;NLS-bearing substrate import into nucleus;0.0411740517301565!GO:0045892;negative regulation of transcription, DNA-dependent;0.0421364471385178!GO:0043631;RNA polyadenylation;0.0430588696451862!GO:0007162;negative regulation of cell adhesion;0.0433501543969957!GO:0008017;microtubule binding;0.0433501543969957!GO:0031570;DNA integrity checkpoint;0.0433501543969957!GO:0006740;NADPH regeneration;0.0433501543969957!GO:0006098;pentose-phosphate shunt;0.0433501543969957!GO:0043433;negative regulation of transcription factor activity;0.0436878556833001!GO:0007004;telomere maintenance via telomerase;0.043705486200147!GO:0001952;regulation of cell-matrix adhesion;0.043705486200147!GO:0030833;regulation of actin filament polymerization;0.0437333345751792!GO:0040013;negative regulation of locomotion;0.0441309857900611!GO:0000118;histone deacetylase complex;0.0442306568159144!GO:0004228;gelatinase A activity;0.0446813070023646!GO:0001955;blood vessel maturation;0.0446813070023646!GO:0009225;nucleotide-sugar metabolic process;0.0452010688107627!GO:0016251;general RNA polymerase II transcription factor activity;0.0459056540708595!GO:0000209;protein polyubiquitination;0.0459781314765151!GO:0006007;glucose catabolic process;0.0466667039256316!GO:0030865;cortical cytoskeleton organization and biogenesis;0.0472025810191214!GO:0006897;endocytosis;0.0479147461652685!GO:0010324;membrane invagination;0.0479147461652685!GO:0045792;negative regulation of cell size;0.0480599033030033!GO:0030125;clathrin vesicle coat;0.0488706762924986!GO:0030665;clathrin coated vesicle membrane;0.0488706762924986!GO:0006695;cholesterol biosynthetic process;0.0490124242833776!GO:0030984;kininogen binding;0.0498884914892192!GO:0004213;cathepsin B activity;0.0498884914892192
|sample_id=14308
|sample_id=14308
|sample_note=
|sample_note=
Line 75: Line 99:
|sample_tissue=skin
|sample_tissue=skin
|top_motifs=HBP1_HMGB_SSRP1_UBTF:2.02362732466;NKX3-1:1.9661245678;EN1,2:1.80839746442;NKX3-2:1.74534668393;XBP1:1.72324107205;ALX4:1.72284306149;ZNF384:1.51784909382;KLF4:1.47514639421;GZF1:1.40902987494;HOX{A5,B5}:1.39868630168;HSF1,2:1.3942777101;TEAD1:1.36861309222;UFEwm:1.33913046235;NKX2-2,8:1.31891389118;ESR1:1.23104369248;ZNF238:1.22793343013;GFI1:1.13294261199;MYBL2:1.1205314549;RXRA_VDR{dimer}:1.06425495399;XCPE1{core}:1.05203863335;TOPORS:0.999177628055;SOX17:0.998983947446;HMGA1,2:0.954157060886;HIF1A:0.930041852333;HES1:0.909798576082;FOXL1:0.906768889218;TFDP1:0.872033415321;RXR{A,B,G}:0.867642373277;SRF:0.836552542399;GTF2A1,2:0.813157272724;GFI1B:0.812700077096;GTF2I:0.810083041659;GATA4:0.793829972739;E2F1..5:0.777442212533;EVI1:0.748048104083;MYB:0.746911339422;MZF1:0.741711081127;NR3C1:0.71461153537;MTE{core}:0.680679554053;AHR_ARNT_ARNT2:0.669194273153;TAL1_TCF{3,4,12}:0.652321327252;GCM1,2:0.618382603912;PRDM1:0.608906406772;TLX1..3_NFIC{dimer}:0.599185395707;ZIC1..3:0.597470668575;ELK1,4_GABP{A,B1}:0.574370916651;TP53:0.568744414169;GLI1..3:0.564344975473;NANOG{mouse}:0.494431311734;PAX8:0.474956308256;NFE2L1:0.470871899024;PAX3,7:0.450595227601;HOX{A4,D4}:0.430725485923;AIRE:0.426657204832;NRF1:0.417882293273;MAFB:0.393104128909;HMX1:0.386270569501;ZBTB6:0.383751327609;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:0.382749094737;ZNF143:0.366868628292;NFY{A,B,C}:0.361982512709;POU1F1:0.360435767517;STAT1,3:0.354637151321;BACH2:0.334077272922;TFAP2{A,C}:0.328821874319;SPZ1:0.328781090355;EBF1:0.327822796639;TFAP4:0.319659499655;MAZ:0.303607770804;SP1:0.299869020357;POU5F1:0.296517764709;MED-1{core}:0.279903130034;IKZF1:0.277484884259;FOS_FOS{B,L1}_JUN{B,D}:0.275311051272;YY1:0.266193558428;RFX1:0.254145779922;NFATC1..3:0.252302066782;DBP:0.247894930614;TFAP2B:0.217471502079;HLF:0.185346376955;TBP:0.147369271173;ALX1:0.140848743187;NFE2L2:0.135219298877;ATF6:0.126842559864;TEF:0.116669564676;CREB1:0.0557420847171;BPTF:0.0503056472259;NFE2:0.0411557305982;HOX{A6,A7,B6,B7}:0.0177366359447;EP300:0.0108387867238;ELF1,2,4:0.00431758096949;PAX1,9:-0.0172402110308;LEF1_TCF7_TCF7L1,2:-0.0302214847326;CRX:-0.0329504143859;MYFfamily:-0.0363117211436;SMAD1..7,9:-0.0391308410321;NKX2-1,4:-0.0399228854232;NHLH1,2:-0.0506505925919;CEBPA,B_DDIT3:-0.0564720621018;NR1H4:-0.0572369867845;CDC5L:-0.0584765939435;POU3F1..4:-0.0668810365765;HIC1:-0.0784496087156;SOX5:-0.0828434575045;ARID5B:-0.0834839698558;FOSL2:-0.0890007093172;ZNF148:-0.101572399669;ZNF423:-0.103910834868;PAX5:-0.117028808392;FOXP1:-0.118503981554;ZFP161:-0.125683889373;HAND1,2:-0.15353736581;EGR1..3:-0.15977062151;LHX3,4:-0.16531335706;FOXN1:-0.174965192989;TLX2:-0.195036732907;RREB1:-0.226547037037;FOXD3:-0.226909647476;ZBTB16:-0.233776932588;FOX{I1,J2}:-0.244554970089;PATZ1:-0.245253046259;TFCP2:-0.24532213002;RUNX1..3:-0.261630972128;PRRX1,2:-0.261715619116;IRF1,2:-0.268640099117;PPARG:-0.287644817515;bHLH_family:-0.288432999056;PAX2:-0.303710783935;AR:-0.317811863586;ATF5_CREB3:-0.318737061683;HNF1A:-0.319960536467;MEF2{A,B,C,D}:-0.352466243085;SREBF1,2:-0.368367894785;PDX1:-0.37618975982;SOX2:-0.386311655052;SOX{8,9,10}:-0.389962269122;SPI1:-0.393015089114;NFIX:-0.400286555701;TBX4,5:-0.427475583597;MTF1:-0.445628595836;NKX2-3_NKX2-5:-0.456375036966;HOXA9_MEIS1:-0.458343341261;SPIB:-0.471296769813;HNF4A_NR2F1,2:-0.475805807079;FOX{D1,D2}:-0.480009140526;NFIL3:-0.482078861139;ETS1,2:-0.486288918108;ADNP_IRX_SIX_ZHX:-0.516270402965;DMAP1_NCOR{1,2}_SMARC:-0.516541893452;ONECUT1,2:-0.528877310986;NANOG:-0.539772209238;NKX6-1,2:-0.54331693364;TGIF1:-0.545005301037;ATF4:-0.55031906081;STAT2,4,6:-0.552401473258;FOXO1,3,4:-0.555260087792;POU2F1..3:-0.567480699984;NFKB1_REL_RELA:-0.600380264071;STAT5{A,B}:-0.654951336728;POU6F1:-0.686290244923;IRF7:-0.721798645817;RBPJ:-0.756462156919;RFX2..5_RFXANK_RFXAP:-0.777031255016;REST:-0.796055974168;OCT4_SOX2{dimer}:-0.815820119046;BREu{core}:-0.822342151397;JUN:-0.824075831375;CUX2:-0.889581867269;PITX1..3:-0.890513359848;T:-0.902300016273;ATF2:-0.916973595677;NR6A1:-0.918418060265;PAX4:-0.920806036823;CDX1,2,4:-0.936754123136;FOXA2:-0.939659313094;GATA6:-0.989176987122;SNAI1..3:-0.999106471772;PAX6:-1.00368550548;FOXM1:-1.02095524466;PBX1:-1.03242824218;NR5A1,2:-1.07351049232;FOXQ1:-1.12329779589;ZEB1:-1.21407523771;FOXP3:-1.25878871319;VSX1,2:-1.3091163757;LMO2:-1.3263275507;MYOD1:-1.37374944805;RXR{A,B,G}_{NR1H2,PPAR}dimers:-1.51998164018;IKZF2:-1.54113233667;ESRRA:-1.64139519787;FOX{F1,F2,J1}:-1.69920757298;RORA:-2.1544203685
|top_motifs=HBP1_HMGB_SSRP1_UBTF:2.02362732466;NKX3-1:1.9661245678;EN1,2:1.80839746442;NKX3-2:1.74534668393;XBP1:1.72324107205;ALX4:1.72284306149;ZNF384:1.51784909382;KLF4:1.47514639421;GZF1:1.40902987494;HOX{A5,B5}:1.39868630168;HSF1,2:1.3942777101;TEAD1:1.36861309222;UFEwm:1.33913046235;NKX2-2,8:1.31891389118;ESR1:1.23104369248;ZNF238:1.22793343013;GFI1:1.13294261199;MYBL2:1.1205314549;RXRA_VDR{dimer}:1.06425495399;XCPE1{core}:1.05203863335;TOPORS:0.999177628055;SOX17:0.998983947446;HMGA1,2:0.954157060886;HIF1A:0.930041852333;HES1:0.909798576082;FOXL1:0.906768889218;TFDP1:0.872033415321;RXR{A,B,G}:0.867642373277;SRF:0.836552542399;GTF2A1,2:0.813157272724;GFI1B:0.812700077096;GTF2I:0.810083041659;GATA4:0.793829972739;E2F1..5:0.777442212533;EVI1:0.748048104083;MYB:0.746911339422;MZF1:0.741711081127;NR3C1:0.71461153537;MTE{core}:0.680679554053;AHR_ARNT_ARNT2:0.669194273153;TAL1_TCF{3,4,12}:0.652321327252;GCM1,2:0.618382603912;PRDM1:0.608906406772;TLX1..3_NFIC{dimer}:0.599185395707;ZIC1..3:0.597470668575;ELK1,4_GABP{A,B1}:0.574370916651;TP53:0.568744414169;GLI1..3:0.564344975473;NANOG{mouse}:0.494431311734;PAX8:0.474956308256;NFE2L1:0.470871899024;PAX3,7:0.450595227601;HOX{A4,D4}:0.430725485923;AIRE:0.426657204832;NRF1:0.417882293273;MAFB:0.393104128909;HMX1:0.386270569501;ZBTB6:0.383751327609;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:0.382749094737;ZNF143:0.366868628292;NFY{A,B,C}:0.361982512709;POU1F1:0.360435767517;STAT1,3:0.354637151321;BACH2:0.334077272922;TFAP2{A,C}:0.328821874319;SPZ1:0.328781090355;EBF1:0.327822796639;TFAP4:0.319659499655;MAZ:0.303607770804;SP1:0.299869020357;POU5F1:0.296517764709;MED-1{core}:0.279903130034;IKZF1:0.277484884259;FOS_FOS{B,L1}_JUN{B,D}:0.275311051272;YY1:0.266193558428;RFX1:0.254145779922;NFATC1..3:0.252302066782;DBP:0.247894930614;TFAP2B:0.217471502079;HLF:0.185346376955;TBP:0.147369271173;ALX1:0.140848743187;NFE2L2:0.135219298877;ATF6:0.126842559864;TEF:0.116669564676;CREB1:0.0557420847171;BPTF:0.0503056472259;NFE2:0.0411557305982;HOX{A6,A7,B6,B7}:0.0177366359447;EP300:0.0108387867238;ELF1,2,4:0.00431758096949;PAX1,9:-0.0172402110308;LEF1_TCF7_TCF7L1,2:-0.0302214847326;CRX:-0.0329504143859;MYFfamily:-0.0363117211436;SMAD1..7,9:-0.0391308410321;NKX2-1,4:-0.0399228854232;NHLH1,2:-0.0506505925919;CEBPA,B_DDIT3:-0.0564720621018;NR1H4:-0.0572369867845;CDC5L:-0.0584765939435;POU3F1..4:-0.0668810365765;HIC1:-0.0784496087156;SOX5:-0.0828434575045;ARID5B:-0.0834839698558;FOSL2:-0.0890007093172;ZNF148:-0.101572399669;ZNF423:-0.103910834868;PAX5:-0.117028808392;FOXP1:-0.118503981554;ZFP161:-0.125683889373;HAND1,2:-0.15353736581;EGR1..3:-0.15977062151;LHX3,4:-0.16531335706;FOXN1:-0.174965192989;TLX2:-0.195036732907;RREB1:-0.226547037037;FOXD3:-0.226909647476;ZBTB16:-0.233776932588;FOX{I1,J2}:-0.244554970089;PATZ1:-0.245253046259;TFCP2:-0.24532213002;RUNX1..3:-0.261630972128;PRRX1,2:-0.261715619116;IRF1,2:-0.268640099117;PPARG:-0.287644817515;bHLH_family:-0.288432999056;PAX2:-0.303710783935;AR:-0.317811863586;ATF5_CREB3:-0.318737061683;HNF1A:-0.319960536467;MEF2{A,B,C,D}:-0.352466243085;SREBF1,2:-0.368367894785;PDX1:-0.37618975982;SOX2:-0.386311655052;SOX{8,9,10}:-0.389962269122;SPI1:-0.393015089114;NFIX:-0.400286555701;TBX4,5:-0.427475583597;MTF1:-0.445628595836;NKX2-3_NKX2-5:-0.456375036966;HOXA9_MEIS1:-0.458343341261;SPIB:-0.471296769813;HNF4A_NR2F1,2:-0.475805807079;FOX{D1,D2}:-0.480009140526;NFIL3:-0.482078861139;ETS1,2:-0.486288918108;ADNP_IRX_SIX_ZHX:-0.516270402965;DMAP1_NCOR{1,2}_SMARC:-0.516541893452;ONECUT1,2:-0.528877310986;NANOG:-0.539772209238;NKX6-1,2:-0.54331693364;TGIF1:-0.545005301037;ATF4:-0.55031906081;STAT2,4,6:-0.552401473258;FOXO1,3,4:-0.555260087792;POU2F1..3:-0.567480699984;NFKB1_REL_RELA:-0.600380264071;STAT5{A,B}:-0.654951336728;POU6F1:-0.686290244923;IRF7:-0.721798645817;RBPJ:-0.756462156919;RFX2..5_RFXANK_RFXAP:-0.777031255016;REST:-0.796055974168;OCT4_SOX2{dimer}:-0.815820119046;BREu{core}:-0.822342151397;JUN:-0.824075831375;CUX2:-0.889581867269;PITX1..3:-0.890513359848;T:-0.902300016273;ATF2:-0.916973595677;NR6A1:-0.918418060265;PAX4:-0.920806036823;CDX1,2,4:-0.936754123136;FOXA2:-0.939659313094;GATA6:-0.989176987122;SNAI1..3:-0.999106471772;PAX6:-1.00368550548;FOXM1:-1.02095524466;PBX1:-1.03242824218;NR5A1,2:-1.07351049232;FOXQ1:-1.12329779589;ZEB1:-1.21407523771;FOXP3:-1.25878871319;VSX1,2:-1.3091163757;LMO2:-1.3263275507;MYOD1:-1.37374944805;RXR{A,B,G}_{NR1H2,PPAR}dimers:-1.51998164018;IKZF2:-1.54113233667;ESRRA:-1.64139519787;FOX{F1,F2,J1}:-1.69920757298;RORA:-2.1544203685
|xref=
|zenbu_report=https://fantom.gsc.riken.jp/zenbu/reports/#miRNA_expression_atlas_human;search_select_hide=table111:FF:14308-155C6;search_select_hide=table117:FF:14308-155C6
}}
}}

Latest revision as of 19:06, 4 June 2020

Name:Fibroblast - skin dystrophia myotonica, donor3 (nuclear fraction)
Species:Human (Homo sapiens)
Library ID:CNhs12399
Sample type:fractionations and perturbations
Genomic View: UCSC
RefEX:Specific genes
CAGEd-oPOSSUM:link
ZENBU report :link
Additional information
Sample information
strainNA
tissueskin
dev stageNA
sexM
age18 year old adult
cell typefibroblast
cell lineNA
companyCoriell
collaborationFANTOM5 OSC CORE (contact: Al Forrest)
External link for information[{{{sample_info_link}}} {{{sample_info_link}}}]
RNA information
lot numberNA
catalog numbercustom
sample typetotal RNA
extraction protocol (Details)OP-RNA-extraction-totalRNA-TRIzol-ethanol-v1.0

CAGE Accession numbers
MethodSample accession id
CAGE  SAMD00005248
Library accession numbers

Library idMethodExp. accession idRun accession id
CNhs12399 CAGE DRX008036 DRR008908
Accession ID Hg19

Library idBAMCTSS
CNhs12399 DRZ000333 DRZ001718
Accession ID Hg38

Library idBAMCTSS
CNhs12399 DRZ011683 DRZ013068
Download raw sequence, BAM & CTSS
Hg19
FastaBAMCTSS
downloaddownloaddonwload
Hg38
BAMCTSS
downloaddonwload


Relative expression to median (log10)

Transcription factors with enriched expression in this sampleRanked list of transcription factor promoter expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.



Co-expression clusters with enriched expression in this sampleRanked list of co-expression cluster expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed. <br>Analyst:NA <br><br>link to dataset.<br>data

Coexpression clusterscore
C0-CD14-Eosinophils-Neutrophils-Basophils-CD34-immature-Peripheral0
C1-testis-epididymis-embryonic-medulla-pituitary-trachea-caudate0
C10-occipital-temporal-parietal-brain-duodenum-Neurons-Neural0
C100-rhabdomyosarcoma-gastric-pineal-Wilms-cervical-mesodermal-endometrial0
C101-small-cerebellum-maxillary-colon-parietal-epididymis-merkel0
C102-neuroblastoma-testicular-pituitary-carcinosarcoma-rectum-acantholytic-iPS0
C103-CD4-CD8-Natural-Peripheral-Whole-Neutrophils-Basophils0
C104-Mast-Basophils-immature-CD14-CD34-eye-Natural0
C105-heart-skeletal-occipital-hippocampus-acute-Sebocyte-penis0.223
C106-Hep2-epitheloid-placenta-cervical-rectal-anaplastic-glassy0
C107-Neutrophils-CD14-Eosinophils-Monocytederived-Whole-Peripheral-blood0
C108-breast-hepatoblastoma-MCF7-parotid-salivary-submaxillary-prostate0
C109-Reticulocytes-non-acute-Hodgkin-Burkitt-retinoblastoma-lymphoma0.475
C11-cerebellum-medulla-pons-parietal-occipital-middle-medial0
C110-leukemia-chronic-Eosinophils-acute-Whole-CD34-Lymphatic0
C111-medulla-lung-trachea-testis-caudate-epididymis-throat0
C112-gastric-pancreas-temporal-duodenum-small-extraskeletal-adrenal0
C113-thyroid-throat-lung-lymph-small-colon-trachea0
C114-teratocarcinoma-medulloblastoma-carcinosarcoma-iPS-anaplastic-acute-neuroblastoma0
C115-pituitary-Neural-caudate-putamen-amygdala-medulla-hippocampus0
C116-myeloma-xeroderma-tonsil-CD19-spleen-lymph-trachea0
C117-serous-clear-kidney-neuroectodermal-mesothelioma-endometrial-Intestinal0
C118-cerebellum-parietal-occipital-medial-middle-frontal-insula0
C119-CD4-CD8-Natural-Neutrophils-CD14-Peripheral-CD190
C12-Mast-Basophils-immature-chorionic-mature-CD14-Eosinophils0
C120-immature-salivary-tongue-skin-cervical-CD14-CD340
C121-NK-Natural-CD8-CD4-anaplastic-chronic-B0
C122-chronic-Reticulocytes-skeletal-leukemia-acute-colon-Tracheal0
C123-CD19-Natural-CD8-CD4-CD14-Peripheral-Basophils0
C124-small-temporal-duodenum-colon-gall-signet-Hepatocyte0
C125-mucinous-alveolar-mesothelioma-Smooth-lung-CD14-Nucleus0
C126-gastrointestinal-argyrophil-smallcell-merkel-bile-insula-brain0
C127-maxillary-small-hepatoblastoma-hepatocellular-alveolar-colon-argyrophil0
C128-testicular-choriocarcinoma-H9-teratocarcinoma-pancreatic-iPS-HES3GFP0
C129-liver-Hepatocyte-colon-duodenum-temporal-testicular-small0
C13-Neutrophils-Eosinophils-CD14-Monocytederived-Whole-Peripheral-CD40
C130-iPS-HES3GFP-H9-teratocarcinoma-testicular-colon-Alveolar0
C131-lung-trachea-Alveolar-thyroid-umbilical-throat-skin0
C132-acute-small-Dendritic-Macrophage-CD14-Neutrophils-Monocytederived0
C133-signet-gall-small-kidney-colon-ductal-adenocarcinoma0
C134-skeletal-diaphragm-tongue-throat-Skeletal-skin-penis0
C135-neuroblastoma-retinoblastoma-carcinoid-choriocarcinoma-testicular-acute-rectum0
C136-Wilms-extraskeletal-anaplastic-rhabdomyosarcoma-cholangiocellular-nonsmall-neuroectodermal0
C137-large-ductal-melanoma-cervical-Endothelial-Smooth-chronic0
C138-diffuse-Burkitt-lymphangiectasia-lymphoma-acute-CD19-pineal0
C139-astrocytoma-skin-salivary-gall-serous-Mallassezderived-renal0
C14-Whole-blood-Reticulocytes-liver-Neutrophils-Eosinophils-spleen0
C140-Renal-Endothelial-Hepatic-Lymphatic-heart-lung-spleen0
C141-Hodgkin-acute-thymus-chronic-vein-CD4-B0
C142-Preadipocyte-Fibroblast-hepatic-Ewing-Adipocyte-Olfactory-Hair0.74
C143-Monocytederived-CD14-Macrophage-Dendritic-Basophils-CD14CD16-Osteoblast0
C144-CD4-tonsil-NK-appendix-CD8-splenic-mycosis0
C145-neuroblastoma-peripheral-neuroectodermal-neuroepithelioma-carcinoid-adult-extraskeletal0
C146-lymphangiectasia-lymphoma-gall-lymph-tonsil-gastric-transitionalcell0
C147-Neutrophils-Eosinophils-CD4-CD14-CD8-Natural-Peripheral0
C148-kidney-small-epididymis-pancreas-serous-duodenum-temporal0
C149-occipital-medial-brain-amygdala-parietal-cerebral-cerebellum0
C15-anaplastic-small-skeletal-neuroblastoma-parietal-temporal-tongue0
C150-merkel-carcinoid-nonsmall-gastrointestinal-argyrophil-pineal-small0
C151-CD14-Natural-Basophils-CD8-Eosinophils-CD4-Mast0
C152-peripheral-neuroectodermal-neuroepithelioma-neuroblastoma-testicular-carcinoid-lung0
C153-rhabdomyosarcoma-liposarcoma-pancreatic-somatostatinoma-Reticulocytes-lymphoma-testicular0
C154-adenocarcinoma-Mesenchymal-Cardiac-small-sacrococcigeal-Smooth-Prostate0
C155-pituitary-placenta-nonsmall-cervical-smallcell-choriocarcinoma-epitheloid0
C156-plasma-splenic-hereditary-B-large-xeroderma-b0
C157-testicular-H9-testis-iPS-teratocarcinoma-colon-trachea0
C158-adrenal-gastric-temporal-parietal-duodenum-caudate-putamen0
C159-choriocarcinoma-pancreatic-placenta-chorionic-testicular-bronchioalveolar-seminal0
C16-medial-amygdala-occipital-parietal-olfactory-putamen-brain0
C160-medulla-Hepatocyte-retina-corpus-liver-pineal-cerebral0
C161-mesothelioma-Mesothelial-acute-mesenchymal-extraskeletal-renal-placenta0
C162-spinal-locus-medulla-substantia-thalamus-globus-diencephalon0
C163-Skeletal-skeletal-Pericytes-Hepatic-rhabdomyosarcoma-throat-mesenchymal0
C164-signet-corpus-optic-mucinous-substantia-salivary-choriocarcinoma0
C165-epithelioid-Adipocyte-mesothelioma-myxofibrosarcoma-lung-gastric-Mesothelial0
C166-Macrophage-Monocytederived-Dendritic-adipose-lymph-CD14-lung0
C167-Basophils-Mast-Eosinophils-Neutrophils-Peripheral-Whole-CD40
C168-Mast-CD14-immature-Basophils-Eosinophils-CD34-Peripheral0
C169-hereditary-adult-gall-lymphangiectasia-chronic-b-choriocarcinoma0
C17-Mast-CD14-Monocytederived-Lymphatic-Smooth-mesenchymal-Macrophage0
C170-epitheloid-cervical-Hep2-keratoacanthoma-adult-neuroblastoma-signet0
C171-merkel-neuroblastoma-pineal-retinoblastoma-carcinoid-small-eye0
C172-chorionic-skeletal-tongue-amniotic-liver-gastrointestinal-Pericytes0
C173-Adipocyte-mature-skin-left-Hepatocyte-Osteoblast-adipose0
C174-CD14-Neutrophils-Smooth-mesothelioma-embryonic-Monocytederived-Eosinophils0
C175-Eosinophils-Neutrophils-CD4-Basophils-CD19-CD8-Natural0
C176-Eosinophils-Neutrophils-Mast-CD14-CD4-Basophils-CD190.0632
C177-melanoma-Melanocyte-mesenchymal-retina-Mallassezderived-Gingival-squamous0
C178-spleen-liver-Hepatocyte-b-lymph-vein-thymus0
C179-CD19-Peripheral-lymphoma-blood-lymph-spleen-tonsil0
C18-CD4-CD8-thymus-Whole-Peripheral-Natural-blood0
C180-skeletal-heart-Hepatocyte-acute-occipital-hippocampus-middle0.22
C181-liposarcoma-somatostatinoma-neuroblastoma-mesothelioma-nonsmall-small-Alveolar0
C182-renal-mature-mesothelioma-lung-Mammary-Adipocyte-acute0
C183-acute-non-CD34-diffuse-CD133-myeloma-Burkitt0
C184-somatostatinoma-smallcell-nonsmall-small-gastrointestinal-pineal-thyroid0
C185-small-adrenal-gastric-Mesenchymal-acute-HES3GFP-testis0
C186-squamous-papillotubular-large-Tracheal-oral-Small-epidermoid0
C187-migratory-immature-Dendritic-CD19-CD14-Monocytederived-Macrophage0
C188-left-heart-tongue-skeletal-Skeletal-diaphragm-throat0
C189-b-splenic-tonsil-CD19-lymph-appendix-spleen0
C19-embryonic-testis-cord-chronic-CD14-NK-mesothelioma0
C190-colon-small-rectum-duodenum-appendix-temporal-oral0
C191-leiomyoblastoma-Mast-parietal-acute-bone-neuroepithelioma-embryonic0
C192-Neutrophils-CD14-Peripheral-Eosinophils-CD8-Natural-CD40
C193-Mesenchymal-Adipocyte-mature-Cardiac-heart-CD14CD16-CD140
C194-MCF7-breast-prostate-Intestinal-diffuse-Wilms-Alveolar0
C195-Small-Gingival-Bronchial-Smooth-mesenchymal-Urothelial-Tracheal0
C196-testicular-iPS-H9-teratocarcinoma-HES3GFP-choriocarcinoma-endometrial0
C197-tongue-esophagus-tonsil-salivary-cervix-nasal-Gingival0
C198-Mesenchymal-Hair-Hepatic-Fibroblast-Smooth-tenocyte-Pericytes0.703
C199-glioblastoma-B-osteosarcoma-Fibroblast-heart-rhabdomyosarcoma-myxofibrosarcoma0
C2-Eosinophils-Neutrophils-CD14-Whole-Basophils-Peripheral-Mast0
C20-heart-left-skeletal-diaphragm-tongue-umbilical-throat0
C200-seminal-Cardiac-Smooth-Hair-submaxillary-Neutrophils-mixed-0.122
C201-colon-small-adenocarcinoma-duodenum-temporal-signet-gall0
C202-salivary-skin-penis-tongue-uterus-cervical-immature0
C203-acute-NK-chronic-CD133-lymphoma-immature-Dendritic0
C204-Smooth-nasal-CD4-CD19-CD8-CD14-CD340
C205-mycosis-cord-hairy-xeroderma-CD4-B-b0
C206-melanoma-somatostatinoma-nonsmall-small-neuroblastoma-smallcell-pituitary0
C207-Corneal-Keratinocyte-Esophageal-Mammary-Bronchial-Urothelial-Sebocyte0
C208-skin-amniotic-papillotubular-salivary-umbilical-Alveolar-serous0
C209-acute-myelodysplastic-CD34-granulocyte-CD133-liver-spleen0
C21-cord-mycosis-hairy-xeroderma-adult-CD4-anaplastic0
C210-Burkitt-lymphoma-appendix-acute-diffuse-CD19-tonsil0
C211-small-Hepatocyte-liver-colon-temporal-duodenum-kidney0
C212-chronic-acute-Whole-Reticulocytes-leukemia-blood-CD340
C213-CD14-Natural-CD8-CD4-Basophils-Eosinophils-Peripheral0
C214-Neurons-Neural-duodenum-temporal-occipital-parietal-brain0
C215-chronic-acute-peripheral-Hepatocyte-osteosarcoma-NK-immature0
C216-osteosarcoma-Smooth-Mesenchymal-large-neuroectodermal-acute-CD340
C217-carcinoid-neuroectodermal-mature-mesodermal-colon-acute-occipital0
C218-tonsil-lymph-CD19-spleen-colon-appendix-salivary0
C219-nasal-Basophils-amniotic-Melanocyte-CD14-Osteoblast-duodenum0
C22-CD4-CD8-Natural-Basophils-CD14-Peripheral-CD190
C220-Adipocyte-mature-left-breast-skin-liver-adipose0
C221-alveolar-Osteoblast-Myoblast-mesenchymal-liposarcoma-Smooth-hepatocellular0
C222-Melanocyte-Tracheal-Neutrophils-seminal-Smooth-Hair-Chondrocyte-0.0515
C223-Chondrocyte-basal-renal-Fibroblast-Smooth-spindle-Synoviocyte0.634
C224-clear-serous-pleomorphic-choriocarcinoma-mesothelioma-amniotic-renal0
C225-ductal-alveolar-giant-prostate-salivary-squamous-Tracheal0
C226-Corneal-Keratinocyte-Esophageal-Urothelial-Mammary-Bronchial-Tracheal0
C227-chorionic-amniotic-Mesenchymal-Placental-gastric-diaphragm-tongue0
C228-colon-Intestinal-Prostate-hepatoblastoma-hepatocellular-testis-adult0
C229-Mesenchymal-CD4-Melanocyte-acute-skeletal-left-heart0.107
C23-CD4-CD8-Natural-Peripheral-Basophils-CD19-CD140
C230-aorta-normal-heart-penis-osteosarcoma-basal-lung0
C231-Mesothelial-mesenchymal-mesothelioma-Fibroblast-Preadipocyte-leiomyoma-mycosis0
C232-teratocarcinoma-HES3GFP-H9-iPS-testicular-neuroblastoma-cerebellum0
C233-uterus-cervix-ovary-epididymis-colon-rectum-MCF70
C234-oral-epidermoid-malignant-cervical-ductal-lung-keratoacanthoma0
C235-Intestinal-Prostate-liver-colon-small-kidney-pancreas0
C236-CD14-Neutrophils-Monocytederived-renal-Eosinophils-testis-mesothelioma0
C237-acute-breast-testicular-hepatoblastoma-chronic-argyrophil-Bronchial0
C238-stomach-gall-breast-duodenum-temporal-MCF7-smallcell0
C239-CD4-lymphangiectasia-CD8-NK-mycosis-Renal-hairy0
C24-pineal-eye-retina-retinoblastoma-medulloblastoma-small-cerebral0
C240-Adipocyte-Preadipocyte-Osteoblast-Chondrocyte-tenocyte-Synoviocyte-mesenchymal0
C241-Reticulocytes-chronic-Tracheal-Hodgkin-Endothelial-Hair-thymus0.197
C242-acute-Chondrocyte-myelodysplastic-granulocyte-biphenotypic-Fibroblast-stomach0
C243-Chondrocyte-trachea-Synoviocyte-mesodermal-renal-Fibroblast-Ewing0
C244-CD14-Monocytederived-Hepatocyte-heart-Neutrophils-acute-Macrophage0
C245-prostate-penis-salivary-esophagus-kidney-Neutrophils-Pancreatic0
C246-Neutrophils-Eosinophils-Whole-CD14-CD14CD16-Basophils-migratory0
C247-pons-locus-medulla-spinal-paracentral-medial-occipital0
C248-iPS-Aortic-Hep2-amygdala-acute-medial-Myoblast0
C249-nonsmall-small-smallcell-occipital-somatostatinoma-maxillary-medial0
C25-small-colon-temporal-duodenum-liver-Hepatocyte-gall0
C250-Mast-Neutrophils-CD14-Eosinophils-CD8-Peripheral-CD40.0166
C251-gall-tonsil-trachea-CD14-salivary-throat-tongue0
C252-hepatic-Olfactory-sacrococcigeal-leiomyoma-normal-Synoviocyte-glioblastoma0
C253-spleen-rhabdomyosarcoma-Hepatocyte-small-uterus-liver-rectum0
C254-prostate-rhabdomyosarcoma-seminal-Fibroblast-transitionalcell-Smooth-Iris0
C255-Wilms-leiomyoblastoma-kidney-adrenal-MCF7-epithelioid-Mast0
C256-occipital-caudate-amygdala-medial-thalamus-hippocampus-medulla0
C257-pineal-insula-frontal-occipital-temporal-medial-paracentral0
C258-hepatoblastoma-hepatocellular-signet-colon-Intestinal-Prostate-gastric0
C259-Preadipocyte-Adipocyte-Fibroblast-Chondrocyte-tenocyte-normal-Ewing0.342
C26-Eosinophils-Neutrophils-CD14-CD14CD16-Basophils-Monocytederived-Whole0
C260-acute-chronic-Natural-NK-Basophils-biphenotypic-blood0
C261-locus-medial-parietal-pons-diencephalon-olfactory-spinal0
C262-breast-MCF7-skeletal-Reticulocytes-mucinous-hepatoblastoma-Wilms0
C263-cervical-keratoacanthoma-tongue-skin-esophagus-throat-tonsil0
C264-giant-keratoacanthoma-colon-fibrosarcoma-HES3GFP-Hep2-acute0
C265-CD4-Eosinophils-CD14-Natural-CD19-Basophils-CD80
C266-acute-chronic-leukemia-small-choriocarcinoma-hepatoma-Mast0
C267-pancreatic-placenta-choriocarcinoma-testicular-teratocarcinoma-chorionic-clear0
C268-Mallassezderived-Urothelial-Gingival-Small-Bronchial-Tracheal-Prostate0
C269-Basophils-Mast-Eosinophils-mature-CD14-chorionic-CD40
C27-pancreas-temporal-duodenum-salivary-ductus-umbilical-lung0
C270-CD4-Fibroblast-acute-iPS-Aortic-CD34-Smooth-0.0814
C271-pineal-spinal-locus-globus-medulla-thalamus-cerebellum0
C272-CD19-CD4-CD8-Whole-Peripheral-lymph-tonsil0
C273-Neutrophils-CD14-Eosinophils-Monocytederived-CD4-Natural-Mast0
C274-CD14-Mast-immature-Basophils-mature-vagina-Hepatocyte0
C275-pons-medulla-cerebellum-locus-thalamus-diencephalon-spinal0
C276-mesothelioma-kidney-renal-small-clear-cerebellum-Renal0
C277-mesothelioma-epithelioid-thyroid-extraskeletal-alveolar-glioblastoma-adenocarcinoma0
C278-amygdala-hippocampus-insula-medial-putamen-temporal-olfactory0
C279-parietal-cerebellum-occipital-temporal-middle-duodenum-medial0
C28-thymus-acute-vein-Hodgkin-chronic-throat-Dendritic0
C280-Mast-Natural-CD19-CD8-Eosinophils-CD34-CD40.0407
C281-Hodgkin-Reticulocytes-chronic-NK-acute-retinoblastoma-small0.385
C282-acute-B-tonsil-CD19-submaxillary-lymph-throat0
C283-tenocyte-Chondrocyte-mesenchymal-Macrophage-pleomorphic-Synoviocyte-cholangiocellular0
C284-parietal-occipital-medial-temporal-olfactory-locus-hippocampus0.204
C285-cervical-Hep2-small-colon-temporal-duodenum-bronchogenic0
C286-cerebellum-occipital-optic-parietal-globus-caudate-medial0
C287-Hepatocyte-Chondrocyte-Adipocyte-Synoviocyte-liver-tenocyte-mesenchymal0
C288-Chondrocyte-Renal-Pericytes-Fibroblast-aorta-Smooth-Meningeal0.491
C289-chorionic-skeletal-heart-Mast-amniotic-granulosa-left0
C29-mature-adipose-Adipocyte-breast-Lymphatic-vein-heart0
C290-Eosinophils-CD14-Basophils-Mast-CD4-CD8-immature0
C291-spinal-substantia-retina-medulla-tongue-skeletal-trachea0
C292-Mesenchymal-skin-umbilical-Adipocyte-mesenchymal-Chondrocyte-skeletal0.279
C293-CD14-CD14CD16-Basophils-Peripheral-immature-Eosinophils-CD340
C294-CD14-Macrophage-Monocytederived-CD14CD16-Neutrophils-Basophils-Peripheral0
C295-Fibroblast-Smooth-Myoblast-Chondrocyte-hepatic-Synoviocyte-Preadipocyte1.17
C296-gall-small-mesothelioma-acute-bronchioalveolar-epidermoid-mixed0
C297-Eosinophils-CD4-Basophils-Natural-Neutrophils-CD8-Peripheral0
C298-small-optic-substantia-thalamus-diencephalon-globus-occipital0
C299-CD14CD16-Eosinophils-Neutrophils-CD14-Whole-Basophils-blood0
C3-occipital-temporal-insula-medial-postcentral-frontal-amygdala0
C30-thyroid-throat-mesothelioma-mucinous-trachea-chorionic-mesenchymal0
C300-CD4-CD8-NK-Natural-blood-mycosis-Basophils0
C301-Smooth-mesenchymal-Endothelial-Hepatic-basal-hepatic-chorionic0.447
C302-acute-peripheral-Neutrophils-NK-myelodysplastic-CD34-carcinoid0
C303-CD14-Basophils-Peripheral-Eosinophils-CD14CD16-Neutrophils-Whole0
C305-heart-skeletal-smooth-left-bladder-penis-esophagus0
C31-skeletal-tongue-diaphragm-throat-penis-skin-trachea0
C32-middle-occipital-parietal-hippocampus-amygdala-medial-olfactory0
C33-Reticulocytes-liver-Whole-blood-chronic-acute-spleen0
C34-placenta-chorionic-choriocarcinoma-mesothelioma-Wilms-Smooth-bile0
C35-caudate-putamen-diencephalon-nucleus-globus-thalamus-insula0
C36-B-b-splenic-plasma-xeroderma-adrenal-Burkitt0
C37-salivary-submaxillary-parotid-seminal-tongue-ductus-trachea0
C38-extraskeletal-rhabdomyosarcoma-adrenal-rectal-mesothelioma-lung-Wilms0
C39-epididymis-ductus-seminal-testis-acute-thyroid-CD1330
C4-optic-corpus-substantia-medulla-spinal-thalamus-globus0
C40-eye-retina-Lens-pineal-tongue-retinoblastoma-small0
C41-retina-eye-medulla-Retinal-medulloblastoma-kidney-pineal0
C42-small-lung-maxillary-pharyngeal-Mesenchymal-Wilms-colon0
C43-ductus-seminal-duodenum-temporal-gall-prostate-bladder0
C44-Dendritic-CD19-CD133-granulocyte-acute-thymus-immature0
C45-testicular-choriocarcinoma-H9-teratocarcinoma-Wilms-pancreatic-iPS0
C46-acute-Hodgkin-thymus-CD8-chronic-CD4-merkel0
C47-CD19-Burkitt-acute-xeroderma-tonsil-lymphoma-appendix0
C48-smooth-bladder-esophagus-colon-penis-aorta-uterus0
C49-H9-iPS-testicular-HES3GFP-teratocarcinoma-hepatoblastoma-choriocarcinoma0
C5-Hepatocyte-liver-hepatocellular-Intestinal-kidney-small-pancreas0
C50-chorionic-placenta-amniotic-migratory-smallcell-chronic-choriocarcinoma0
C51-kidney-mesothelioma-renal-signet-gall-lung-pancreas0
C52-adult-NK-chronic-cord-testis-embryonic-myeloma0
C53-medulloblastoma-pineal-retinoblastoma-small-retina-eye-pituitary0
C54-Dendritic-Macrophage-Monocytederived-CD14-leiomyoma-adipose-immature0
C55-hepatocellular-Intestinal-liver-Prostate-fibrosarcoma-Hepatocyte-hepatoblastoma0
C56-heart-left-umbilical-skeletal-penis-diaphragm-tongue0
C57-Neutrophils-Eosinophils-Whole-CD4-CD8-CD19-Natural0
C58-Melanocyte-melanoma-retina-Retinal-eye-migratory-H90
C59-Smooth-Fibroblast-Mesenchymal-tenocyte-Ewing-skin-hepatic0.881
C6-CD14-Eosinophils-Basophils-Peripheral-CD34-Natural-immature0
C60-esophagus-tonsil-throat-tongue-uterus-cervix-cervical0
C61-migratory-Dendritic-immature-Macrophage-xeroderma-cord-b0
C62-Burkitt-tonsil-CD19-submaxillary-spleen-salivary-lymph0
C63-neuroectodermal-neuroblastoma-carcinoid-peripheral-chronic-neuroepithelioma-acute0
C64-Mast-chronic-acute-immature-chorionic-Basophils-Dendritic0
C65-CD14-Eosinophils-Monocytederived-Basophils-immature-Macrophage-Neutrophils0
C66-cerebellum-middle-occipital-parietal-medial-amygdala-hippocampus0
C67-CD14-Monocytederived-Macrophage-dura-Dendritic-spleen-lung0
C68-amniotic-chorionic-Placental-salivary-placenta-tongue-mesothelioma0
C69-anaplastic-CD14-cord-hairy-mycosis-adult-NK0
C7-CD14-Eosinophils-Neutrophils-Smooth-Basophils-Macrophage-Mast0
C70-parotid-submaxillary-salivary-throat-trachea-aorta-tongue0
C71-Monocytederived-Macrophage-CD14-Dendritic-Osteoblast-leiomyoma-Prostate0
C72-skeletal-tongue-throat-heart-diaphragm-penis-left0
C73-pineal-eye-retina-caudate-cerebellum-left-parietal0
C74-splenic-B-b-plasma-xeroderma-lymphoma-hairy0
C75-Eosinophils-Natural-CD8-Basophils-CD14-CD4-Peripheral0
C76-argyrophil-gastrointestinal-temporal-duodenum-neuroblastoma-merkel-smallcell0
C77-Saos2-osteosarcoma-Neutrophils-Natural-Chondrocyte-Basophils-CD80
C78-lymphoma-plasma-tonsil-appendix-lymph-seminal-trachea0
C79-chorionic-Chondrocyte-Cardiac-Smooth-Fibroblast-Preadipocyte-Mesenchymal0.954
C8-Natural-CD8-Basophils-CD4-CD14-Peripheral-CD340
C80-immature-migratory-CD14-Dendritic-splenic-cord-Mast0
C81-trachea-salivary-throat-aorta-eye-submaxillary-parotid0
C82-Basophils-CD14-Eosinophils-Natural-Peripheral-immature-CD340
C83-choriocarcinoma-pancreatic-placenta-chorionic-HES3GFP-testicular-amniotic0
C84-choriocarcinoma-pancreatic-Wilms-Mallassezderived-thymus-salivary-colon0
C85-neuroblastoma-carcinoid-retinoblastoma-small-pineal-rhabdomyosarcoma-medulloblastoma0
C86-colon-carcinoid-small-neuroectodermal-giant-large-neuroepithelioma0
C87-retinoblastoma-left-nonsmall-heart-small-diaphragm-bronchogenic0
C88-Melanocyte-melanoma-Macrophage-Mesenchymal-migratory-Dendritic-Monocytederived0
C89-small-retinoblastoma-medulloblastoma-iPS-acantholytic-eye-bronchogenic0
C9-skeletal-diaphragm-tongue-throat-penis-heart-left0
C90-neuroectodermal-peripheral-neuroepithelioma-neuroblastoma-carcinoid-parietal-putamen0
C91-Fibroblast-Smooth-mesenchymal-Mesothelial-Small-Preadipocyte-Hair0
C92-CD14CD16-CD14-Eosinophils-Basophils-Neutrophils-Macrophage-Whole0
C93-chronic-acute-leukemia-acantholytic-medulloblastoma-testis-papillotubular0
C94-smallcell-adrenal-lung-nonsmall-small-somatostatinoma-teratocarcinoma0
C95-lung-aorta-trachea-penis-Alveolar-throat-endometrioid0
C96-non-acute-tonsil-spleen-Burkitt-lymphoma-appendix0
C97-small-smallcell-gastrointestinal-argyrophil-putamen-duodenum-brain0
C98-CD8-Natural-Basophils-blood-CD4-Peripheral-Whole0
C99-hairy-mycosis-submaxillary-salivary-cord-kidney-parotid0



Repeat families with enriched expression in this sample<b>Summary:</b>Ranked list of repeat family expression in this sample relative tothe median expression in the FANTOM5 collection is shown. Value is log10transformed.<br><b>Analyst:</b>NA<br><br>link to dataset.<br>data



TFBS(DNA)motifs over-represented in proximal region of promoters active in this sample

JASPAR motifs<b>Summary:</b>Association of JASPAR motif to the promoter expression in thissample. Pearson's correlation between the number of TFBSs estimated byusing the position-weight matrix for each promoter and its expression isexpressed as Z-score by taking the ones based on random position-weightmatrix, and the tail probability of the normal distribution correspondingto the Z-score is taken as the resulting P-value. Lower P-value indicatesmore (non-random) association of the motif to promoter expression<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data

library id: CNhs12399

Jaspar motifP-value
MA0002.20.0075
MA0003.10.703
MA0004.10.156
MA0006.10.45
MA0007.10.792
MA0009.10.48
MA0014.10.513
MA0017.10.00717
MA0018.20.0881
MA0019.10.967
MA0024.10.0426
MA0025.10.0668
MA0027.10.872
MA0028.10.3
MA0029.10.466
MA0030.10.0606
MA0031.10.0262
MA0035.21.98895e-4
MA0038.10.654
MA0039.20.73
MA0040.10.895
MA0041.10.86
MA0042.10.731
MA0043.10.00594
MA0046.10.181
MA0047.20.284
MA0048.18.9153e-4
MA0050.10.0233
MA0051.10.0899
MA0052.10.823
MA0055.10.0601
MA0057.10.621
MA0058.10.0574
MA0059.10.158
MA0060.10.44
MA0061.11.37934e-4
MA0062.20.893
MA0065.25.90397e-4
MA0066.10.41
MA0067.10.327
MA0068.10.225
MA0069.10.0957
MA0070.10.32
MA0071.10.0925
MA0072.10.0593
MA0073.10.881
MA0074.10.609
MA0076.10.0692
MA0077.10.315
MA0078.10.423
MA0079.20.377
MA0080.22.65832e-9
MA0081.10.0651
MA0083.10.018
MA0084.10.581
MA0087.10.28
MA0088.10.874
MA0090.10.00326
MA0091.10.288
MA0092.10.848
MA0093.10.211
MA0099.20.771
MA0100.10.212
MA0101.13.79866e-4
MA0102.20.211
MA0103.11.90116e-5
MA0104.29.41007e-4
MA0105.12.54593e-4
MA0106.10.558
MA0107.18.05747e-5
MA0108.20.204
MA0111.10.104
MA0112.20.751
MA0113.10.935
MA0114.10.0033
MA0115.10.162
MA0116.10.748
MA0117.10.916
MA0119.10.508
MA0122.10.272
MA0124.10.103
MA0125.10.462
MA0131.10.718
MA0135.10.828
MA0136.15.43477e-7
MA0137.20.413
MA0138.20.324
MA0139.10.301
MA0140.10.018
MA0141.10.0226
MA0142.10.00899
MA0143.10.469
MA0144.10.383
MA0145.10.61
MA0146.10.659
MA0147.10.0582
MA0148.10.0387
MA0149.10.528
MA0150.10.0491
MA0152.10.23
MA0153.10.903
MA0154.10.118
MA0155.10.619
MA0156.10.0987
MA0157.10.0778
MA0159.10.152
MA0160.10.00454
MA0162.10.141
MA0163.10.483
MA0164.10.715
MA0258.10.123
MA0259.10.387



FANTOM5 phase1 novel unique motifs<b>Summary:</b>Association of the 169 novel and unique motifs discovered in FANTOM5 phase1 in this sample. Among the de-novo motifs discovered by DMF, HOMER,ChIPMunk, and ScanAll, only novel motifs are selected after comparison with known motif sets, and their clustering based on MACRO-APE resulted in169 novel and unique motifs. Their association to the promoter expression is evaluated in the same way to the JASPAR motif above<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data

library id: CNhs12399

Novel motifP-value
10.0988
100.63
1000.895
1010.193
1020.398
1030.136
1040.663
1050.437
1060.0238
1070.843
1080.963
1090.147
110.259
1100.714
1110.0678
1120.697
1130.0141
1140.111
1150.0819
1160.821
1170.504
1180.589
1190.105
120.812
1200.999
1210.555
1220.278
1230.00762
1240.099
1250.788
1260.234
1270.336
1280.012
1290.13
130.639
1300.432
1310.0969
1320.498
1330.858
1340.972
1350.843
1360.459
1370.759
1380.621
1390.0036
140.426
1400.273
1410.142
1420.913
1430.265
1440.941
1450.851
1460.271
1470.116
1480.0451
1490.398
150.0219
1500.345
1510.0805
1520.837
1530.446
1540.376
1550.0308
1560.291
1570.2
1580.0436
1590.993
160.936
1600.266
1610.14
1620.569
1630.745
1640.941
1650.235
1660.0803
1670.146
1680.878
1690.828
170.656
180.753
190.565
20.836
200.765
210.851
220.792
230.592
240.358
250.117
260.91
270.504
280.632
290.892
30.463
300.549
310.509
321.47759e-6
330.361
340.786
350.104
360.0461
370.665
380.348
390.887
40.44
400.118
410.378
420.254
430.295
440.365
450.396
460.344
470.179
480.504
490.0786
50.437
500.665
510.327
520.345
530.261
540.363
550.702
560.46
570.619
580.0986
590.304
60.905
600.106
610.32
620.0819
630.552
640.168
650.357
660.895
670.66
680.877
690.791
70.0736
700.0158
710.657
720.173
730.89
740.16
750.206
760.933
770.987
780.0315
790.217
80.226
800.321
810.386
820.246
830.2
840.552
850.228
860.903
870.828
880.735
890.358
90.919
900.0838
910.937
920.296
930.623
940.192
950.446
960.341
970.733
980.126
990.183



de novo motifs identified by HOMER in promoters active in this sample<b>Summary:</b>The result of HOMER in this sample is shown.<br><b>Analyst:</b>NA <br> library id: CNhs12399


FANTOM5 (FF) ontology

Direct parent terms


Ancestor terms (non development)<b>Summary:</b>Connected ontology terms with is_a, part_of or located_in relationship <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source data<br>data

CL: Cell type
0000000 (cell), 0000000 (cell)
0000003 (native cell)
0000548 (animal cell)
0002320 (connective tissue cell)
0002371 (somatic cell)
0000255 (eukaryotic cell)
0000057 (fibroblast)
0002620 (skin fibroblast)

DOID: Disease
4 (disease)
17 (musculoskeletal system disease)
450 (myotonic disease)
7 (disease of anatomical entity)
66 (muscle tissue disease)
423 (myopathy)
0080000 (muscular disease)
11722 (myotonic dystrophy)

UBERON: Anatomy
0000468 (multi-cellular organism)
0002097 (skin of body)
0002199 (integument)
0002384 (connective tissue)
0000479 (tissue)
0000062 (organ)
0000061 (anatomical structure)
0000465 (material anatomical entity)
0000467 (anatomical system)
0001062 (anatomical entity)
0000480 (anatomical group)
0003102 (surface structure)
0002416 (integumental system)

FF: FANTOM5
0000102 (sample by type)
0000210 (human sample)
0000002 (in vivo cell sample)
0000101 (sample by species)
0000057 (fibroblast sample)
0000250 (human fibroblast of skin sample)
0000001 (sample)
0000408 (cellular fractionation sample)
0000350 (experimentally modified sample)
0000253 (human fibroblast- skin dystrophia myotonica sample)
0000406 (nuclear fraction sample)
0000667 (human Fibroblast - skin dystrophia myotonica, nuclear fraction sample)

Ancestor terms (development)<b>Summary:</b>Connected ontology terms with develops_from, derives_from or preceded_by relationship <br><b>Analyst:</b> Hideya Kawaji <br><br>link to source data<br>data
CL:0000134 (mesenchymal cell)

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