FF:14311-155C9: Difference between revisions
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{{f5samples | {{f5samples | ||
|ancestors_in_anatomy_facet=UBERON: | |DRA_sample_Accession=CAGE@SAMD00005828 | ||
|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL: | |DRA_sample_Accession_RNASeq=sRNA-Seq@SAMD00005828 | ||
|accession_numbers=CAGE;DRX008034;DRR008906;DRZ000331;DRZ001716;DRZ011681;DRZ013066 | |||
|accession_numbers_RNASeq=sRNA-Seq;DRX036988;DRR041354;DRZ006996 | |||
|ancestors_in_anatomy_facet=UBERON:0000468,UBERON:0000947,UBERON:0001637,UBERON:0000483,UBERON:0002384,UBERON:0000479,UBERON:0000055,UBERON:0000064,UBERON:0000062,UBERON:0004111,UBERON:0004120,UBERON:0000061,UBERON:0000465,UBERON:0003914,UBERON:0000025,UBERON:0004923,UBERON:0000477,UBERON:0000467,UBERON:0000060,UBERON:0001062,UBERON:0000480,UBERON:0000119,UBERON:0004573,UBERON:0003509,UBERON:0007500,UBERON:0001981,UBERON:0002049,UBERON:0004797,UBERON:0010317,UBERON:0007798,UBERON:0000415,UBERON:0007240,UBERON:0005742,UBERON:0005734,UBERON:0004664,UBERON:0004535,UBERON:0004571,UBERON:0010191,UBERON:0004572,UBERON:0004537,UBERON:0001009,UBERON:0004663 | |||
|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000548,CL:0002320,CL:0002371,CL:0000255,CL:0000057,CL:1000306,CL:0002547 | |||
|ancestors_in_disease_facet= | |ancestors_in_disease_facet= | ||
|ancestors_in_ff_facet=FF:0000102,FF:0000210,FF:0000002,FF:0000101,FF:0000057,FF:0000001,FF:0000408,FF:0000350,FF:0000058,FF:0000406,FF:0000666 | |||
|comment= | |comment= | ||
|created_by= | |created_by= | ||
|creation_date= | |creation_date= | ||
|data_phase=2 | |||
|datafreeze_phase=2 | |||
|def= | |def= | ||
|expression_enrichment_score | |||
|fonse_cell_line= | |fonse_cell_line= | ||
|fonse_cell_line_closure= | |fonse_cell_line_closure= | ||
| Line 35: | Line 43: | ||
|fonse_treatment_closure= | |fonse_treatment_closure= | ||
|has_quality= | |has_quality= | ||
|hg19bam=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.fractionation.hCAGE/Fibroblast%2520-%2520Aortic%2520Adventitial%252c%2520donor3%2520%2528nuclear%2520fraction%2529.CNhs12400.14311-155C9.hg19.nobarcode.bam | |||
|hg19ctss=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.fractionation.hCAGE/Fibroblast%2520-%2520Aortic%2520Adventitial%252c%2520donor3%2520%2528nuclear%2520fraction%2529.CNhs12400.14311-155C9.hg19.ctss.bed.gz | |||
|hg19fasta=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.fractionation.hCAGE/Fibroblast%2520-%2520Aortic%2520Adventitial%252c%2520donor3%2520%2528nuclear%2520fraction%2529.CNhs12400.14311-155C9.hg19.nobarcode.rdna.fa.gz | |||
|hg38bam=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.fractionation.hCAGE/Fibroblast%2520-%2520Aortic%2520Adventitial%252c%2520donor3%2520%2528nuclear%2520fraction%2529.CNhs12400.14311-155C9.hg38.nobarcode.bam | |||
|hg38ctss=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.fractionation.hCAGE/Fibroblast%2520-%2520Aortic%2520Adventitial%252c%2520donor3%2520%2528nuclear%2520fraction%2529.CNhs12400.14311-155C9.hg38.nobarcode.ctss.bed.gz | |||
|id=FF:14311-155C9 | |id=FF:14311-155C9 | ||
|is_a=EFO:0002091;;FF: | |is_a=EFO:0002091;;FF:0000666 | ||
|is_obsolete= | |||
|library_id=CNhs12400 | |||
|library_id_phase_based=2:CNhs12400 | |||
|microRNAs= | |||
|microRNAs_nn= | |||
|microRNAs_nonnovel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer/#/human#cage;sample;14311 | |||
|microRNAs_nonnovel_srna=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2016/vis_viewer/#/human#srna;sample;SRhi10015.GGTAGC.14311 | |||
|microRNAs_novel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer_novel/#/human#cage;sample;14311 | |||
|microRNAs_novel_srna=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2016/vis_viewer_novel/#/human#srna;sample;SRhi10015.GGTAGC.14311 | |||
|name=Fibroblast - Aortic Adventitial, donor3 (nuclear fraction) | |name=Fibroblast - Aortic Adventitial, donor3 (nuclear fraction) | ||
|namespace=FANTOM5 | |namespace=FANTOM5 | ||
| Line 42: | Line 64: | ||
|profile_cagescan=,,, | |profile_cagescan=,,, | ||
|profile_hcage=CNhs12400,LSID914,release011,COMPLETED | |profile_hcage=CNhs12400,LSID914,release011,COMPLETED | ||
|profile_rnaseq= | |profile_rnaseq= | ||
|profile_srnaseq=,,, | |profile_srnaseq=,,, | ||
|refex=http://refex.dbcls.jp/genelist.php?lang | |||
|repeat_enrich_byfamily=0,0,0.054761705771024,0,0,0,0,0.109313946398475,0,-0.165309886664043,0.895342414424625,0,0,0,0,0,0,0,0,0,0,0,0.196914560204395,0,0.0435915498559676,0,0,0,0,0,0.998029210579938,0,0,0.614407507731688,0,0,0,0,0,0,0,0,0,0,0.196914560204395,0,0.0472769048114813,0.724484715943237,0.196914560204395,0,0.109523411542048,0,0,0,0,0.074242258989363,0,0,0,0.587527580809895,0,0,0,0.23490976400982,0,0,0.337388062750184,0.196914560204395,0,0,0,0,0,0,0,0,0,0,0,0,0.109523411542048,0,0,0,0.091129737111791,0,0,0,0.054761705771024,0,0,0.0330942519325563,0.357364754455066,0,0,-0.0315154532117434,0.137328093480103,0,0.724484715943237,0.13481598824243,0,0.171596625247154,0.491680124153683,0,0,0,0,0,0,0.517814948705737,0,0,0,0,0,0,0,0,0,0,0.12099225105918,0,0,0,-0.0562622698659916,-0.176398633129525,0,0,0.35230719721652,0,0,0 | |||
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| |||
|rna_box=155 | |rna_box=155 | ||
|rna_catalog_number=N/A | |rna_catalog_number=N/A | ||
| Line 56: | Line 81: | ||
|rna_tube_id=155C9 | |rna_tube_id=155C9 | ||
|rna_weight_ug=43.67385 | |rna_weight_ug=43.67385 | ||
|rnaseq_library_id=SRhi10015.GGTAGC | |||
|sample_age=19 | |sample_age=19 | ||
|sample_category=fractionations and perturbations | |||
|sample_cell_catalog=CC-7014 | |sample_cell_catalog=CC-7014 | ||
|sample_cell_line= | |sample_cell_line= | ||
| Line 69: | Line 96: | ||
|sample_ethnicity=B | |sample_ethnicity=B | ||
|sample_experimental_condition=nuclear RNA | |sample_experimental_condition=nuclear RNA | ||
|sample_gostat=GO:0044464;cell part;0!GO:0005622;intracellular;0!GO:0044424;intracellular part;1.92171242713089e-235!GO:0005737;cytoplasm;3.36641841389446e-151!GO:0043231;intracellular membrane-bound organelle;2.58194996329976e-146!GO:0043227;membrane-bound organelle;5.88129187739565e-146!GO:0043226;organelle;3.63548470314331e-144!GO:0043229;intracellular organelle;5.15471184316831e-144!GO:0044444;cytoplasmic part;1.22114565742715e-118!GO:0044422;organelle part;1.58544958514608e-113!GO:0044446;intracellular organelle part;3.19254681654037e-112!GO:0044238;primary metabolic process;6.68098608241267e-72!GO:0044237;cellular metabolic process;1.10321133302317e-67!GO:0043170;macromolecule metabolic process;7.85057451930323e-65!GO:0005515;protein binding;1.36788291300144e-64!GO:0032991;macromolecular complex;1.62179921875181e-61!GO:0043233;organelle lumen;3.81085161834999e-52!GO:0031974;membrane-enclosed lumen;3.81085161834999e-52!GO:0044428;nuclear part;1.34660761554619e-51!GO:0031090;organelle membrane;1.54634829188788e-50!GO:0003723;RNA binding;2.39235467410607e-50!GO:0005634;nucleus;5.77251848195632e-47!GO:0030529;ribonucleoprotein complex;7.27866452766715e-47!GO:0019538;protein metabolic process;3.50734437606177e-46!GO:0044260;cellular macromolecule metabolic process;1.20548432383068e-40!GO:0016043;cellular component organization and biogenesis;2.92319438601351e-40!GO:0044267;cellular protein metabolic process;4.73519032308466e-40!GO:0033036;macromolecule localization;1.65413322390318e-36!GO:0015031;protein transport;2.89513509815123e-36!GO:0006396;RNA processing;7.56049927581917e-36!GO:0005739;mitochondrion;1.101388342656e-34!GO:0045184;establishment of protein localization;1.56306879344127e-33!GO:0008104;protein localization;1.80080488814527e-33!GO:0043283;biopolymer metabolic process;1.80080488814527e-33!GO:0046907;intracellular transport;1.00320474500986e-32!GO:0043234;protein complex;1.00320474500986e-32!GO:0005783;endoplasmic reticulum;2.53826056764532e-32!GO:0009058;biosynthetic process;2.06011094765437e-31!GO:0031981;nuclear lumen;6.65368810472192e-31!GO:0006412;translation;1.78577731346688e-30!GO:0016071;mRNA metabolic process;6.69016456279899e-30!GO:0009059;macromolecule biosynthetic process;1.7401847203417e-28!GO:0012505;endomembrane system;6.37358272302456e-28!GO:0005829;cytosol;2.35169142783764e-27!GO:0031967;organelle envelope;1.09460801287696e-26!GO:0006886;intracellular protein transport;1.11375941167609e-26!GO:0031975;envelope;1.76787644353558e-26!GO:0044432;endoplasmic reticulum part;7.30630364212791e-26!GO:0005840;ribosome;5.16226605547751e-25!GO:0006397;mRNA processing;5.56631111648342e-25!GO:0006139;nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;8.16179899767617e-25!GO:0008380;RNA splicing;1.18298751744648e-24!GO:0006996;organelle organization and biogenesis;1.29588916335027e-24!GO:0044249;cellular biosynthetic process;4.64881238636596e-24!GO:0000166;nucleotide binding;7.3421021401054e-24!GO:0010467;gene expression;8.86773197258058e-24!GO:0065003;macromolecular complex assembly;1.95034878563359e-23!GO:0044429;mitochondrial part;1.33493592723946e-22!GO:0003735;structural constituent of ribosome;9.91713419445098e-22!GO:0005794;Golgi apparatus;1.01229448069444e-20!GO:0022607;cellular component assembly;1.09544894112463e-20!GO:0033279;ribosomal subunit;6.65792683902347e-20!GO:0051641;cellular localization;1.81744294128126e-19!GO:0051649;establishment of cellular localization;3.05394887280533e-19!GO:0007049;cell cycle;3.92061511096204e-19!GO:0006259;DNA metabolic process;3.96308895809357e-19!GO:0043228;non-membrane-bound organelle;4.19795887750136e-19!GO:0043232;intracellular non-membrane-bound organelle;4.19795887750136e-19!GO:0005654;nucleoplasm;9.813690671837e-19!GO:0022613;ribonucleoprotein complex biogenesis and assembly;1.98291710585849e-18!GO:0048770;pigment granule;2.17889486846445e-18!GO:0042470;melanosome;2.17889486846445e-18!GO:0016462;pyrophosphatase activity;2.7764093241755e-18!GO:0005830;cytosolic ribosome (sensu Eukaryota);2.98470398309385e-18!GO:0042175;nuclear envelope-endoplasmic reticulum network;4.29821921573668e-18!GO:0016818;hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides;4.42376979189511e-18!GO:0016817;hydrolase activity, acting on acid anhydrides;5.60774093807953e-18!GO:0017111;nucleoside-triphosphatase activity;5.9569726167155e-18!GO:0005789;endoplasmic reticulum membrane;2.40138860737868e-17!GO:0005524;ATP binding;4.56329875568588e-17!GO:0017076;purine nucleotide binding;5.10130794034412e-17!GO:0005681;spliceosome;5.68568112348114e-17!GO:0006457;protein folding;6.40866286468629e-17!GO:0032553;ribonucleotide binding;9.20007307921241e-17!GO:0032555;purine ribonucleotide binding;9.20007307921241e-17!GO:0030554;adenyl nucleotide binding;1.42820502732716e-16!GO:0032559;adenyl ribonucleotide binding;1.48167162709357e-16!GO:0016874;ligase activity;7.20356342854097e-16!GO:0022402;cell cycle process;2.68767701275919e-15!GO:0005740;mitochondrial envelope;2.89910725995405e-15!GO:0031966;mitochondrial membrane;1.02706989957602e-14!GO:0044451;nucleoplasm part;1.10941731465424e-14!GO:0019866;organelle inner membrane;1.63851371093203e-14!GO:0003676;nucleic acid binding;3.58240060393457e-14!GO:0008134;transcription factor binding;5.1648129227138e-14!GO:0006605;protein targeting;5.22713094835758e-14!GO:0048193;Golgi vesicle transport;5.27180448644771e-14!GO:0005793;ER-Golgi intermediate compartment;7.07949417198101e-14!GO:0000278;mitotic cell cycle;1.38966553816323e-13!GO:0006119;oxidative phosphorylation;1.77094503638386e-13!GO:0044445;cytosolic part;2.94937741883514e-13!GO:0043412;biopolymer modification;5.36016024028978e-13!GO:0016887;ATPase activity;8.69539651713869e-13!GO:0005743;mitochondrial inner membrane;1.58533162814138e-12!GO:0005730;nucleolus;3.40230816300437e-12!GO:0031965;nuclear membrane;3.64020874949002e-12!GO:0005788;endoplasmic reticulum lumen;3.64020874949002e-12!GO:0005635;nuclear envelope;3.64020874949002e-12!GO:0043285;biopolymer catabolic process;3.9921838660548e-12!GO:0044265;cellular macromolecule catabolic process;5.8308219622552e-12!GO:0006512;ubiquitin cycle;5.99641130300974e-12!GO:0042623;ATPase activity, coupled;1.42045533271089e-11!GO:0006974;response to DNA damage stimulus;1.42045533271089e-11!GO:0051082;unfolded protein binding;1.51838525753034e-11!GO:0006464;protein modification process;1.58311714252951e-11!GO:0051603;proteolysis involved in cellular protein catabolic process;1.6857004295522e-11!GO:0000502;proteasome complex (sensu Eukaryota);2.00731234683823e-11!GO:0016192;vesicle-mediated transport;2.06034964799872e-11!GO:0006511;ubiquitin-dependent protein catabolic process;2.2436900021347e-11!GO:0008135;translation factor activity, nucleic acid binding;2.43719204276852e-11!GO:0022618;protein-RNA complex assembly;2.75690532171384e-11!GO:0044257;cellular protein catabolic process;2.97028677847777e-11!GO:0030163;protein catabolic process;3.30635651669159e-11!GO:0019941;modification-dependent protein catabolic process;3.45209797366785e-11!GO:0043632;modification-dependent macromolecule catabolic process;3.45209797366785e-11!GO:0009057;macromolecule catabolic process;3.7937483241357e-11!GO:0044453;nuclear membrane part;4.99279637598874e-11!GO:0015934;large ribosomal subunit;5.89511441218448e-11!GO:0016070;RNA metabolic process;7.93154355120295e-11!GO:0051186;cofactor metabolic process;1.59127258227548e-10!GO:0004386;helicase activity;1.60916569351878e-10!GO:0044455;mitochondrial membrane part;2.26397799845898e-10!GO:0000087;M phase of mitotic cell cycle;3.26230883483937e-10!GO:0005773;vacuole;3.371373190125e-10!GO:0007067;mitosis;4.08672958570314e-10!GO:0006913;nucleocytoplasmic transport;7.92100313300416e-10!GO:0000398;nuclear mRNA splicing, via spliceosome;1.03833484284506e-09!GO:0000375;RNA splicing, via transesterification reactions;1.03833484284506e-09!GO:0000377;RNA splicing, via transesterification reactions with bulged adenosine as nucleophile;1.03833484284506e-09!GO:0031980;mitochondrial lumen;1.04831385635165e-09!GO:0005759;mitochondrial matrix;1.04831385635165e-09!GO:0051726;regulation of cell cycle;1.13014326362358e-09!GO:0015935;small ribosomal subunit;1.16224597937187e-09!GO:0044248;cellular catabolic process;1.23784625882854e-09!GO:0000074;regulation of progression through cell cycle;1.33415570759885e-09!GO:0051169;nuclear transport;1.44298489774665e-09!GO:0005842;cytosolic large ribosomal subunit (sensu Eukaryota);1.76083740119737e-09!GO:0044431;Golgi apparatus part;1.82733982660094e-09!GO:0048523;negative regulation of cellular process;1.85243181056408e-09!GO:0000323;lytic vacuole;2.13588886770888e-09!GO:0005764;lysosome;2.13588886770888e-09!GO:0003712;transcription cofactor activity;2.13588886770888e-09!GO:0016604;nuclear body;2.29721529206605e-09!GO:0006281;DNA repair;4.36531264042057e-09!GO:0005843;cytosolic small ribosomal subunit (sensu Eukaryota);4.54490131697434e-09!GO:0022403;cell cycle phase;5.07137564835357e-09!GO:0043687;post-translational protein modification;6.65576882948532e-09!GO:0003743;translation initiation factor activity;7.51287263443409e-09!GO:0006461;protein complex assembly;8.21289615469317e-09!GO:0015630;microtubule cytoskeleton;8.49248810382346e-09!GO:0051276;chromosome organization and biogenesis;1.00062125103386e-08!GO:0016787;hydrolase activity;1.11802253231351e-08!GO:0008026;ATP-dependent helicase activity;1.17212001562031e-08!GO:0006399;tRNA metabolic process;1.20952086609736e-08!GO:0005694;chromosome;1.23671491051126e-08!GO:0006732;coenzyme metabolic process;1.42055278361197e-08!GO:0016876;ligase activity, forming aminoacyl-tRNA and related compounds;1.45233507521444e-08!GO:0004812;aminoacyl-tRNA ligase activity;1.45233507521444e-08!GO:0016875;ligase activity, forming carbon-oxygen bonds;1.45233507521444e-08!GO:0008565;protein transporter activity;1.4653535362219e-08!GO:0016655;oxidoreductase activity, acting on NADH or NADPH, quinone or similar compound as acceptor;1.48303029309142e-08!GO:0051301;cell division;1.64636711177992e-08!GO:0006446;regulation of translational initiation;2.03379989080841e-08!GO:0043038;amino acid activation;2.04999755056389e-08!GO:0006418;tRNA aminoacylation for protein translation;2.04999755056389e-08!GO:0043039;tRNA aminoacylation;2.04999755056389e-08!GO:0009719;response to endogenous stimulus;2.10876097971324e-08!GO:0005746;mitochondrial respiratory chain;2.31251487313875e-08!GO:0006888;ER to Golgi vesicle-mediated transport;7.15676875455236e-08!GO:0016607;nuclear speck;8.12248176571456e-08!GO:0048519;negative regulation of biological process;8.49882690832583e-08!GO:0008639;small protein conjugating enzyme activity;9.56787373158949e-08!GO:0004842;ubiquitin-protein ligase activity;1.05861623621108e-07!GO:0044427;chromosomal part;1.06616986324171e-07!GO:0006260;DNA replication;1.14361545663341e-07!GO:0050136;NADH dehydrogenase (quinone) activity;1.19132193092083e-07!GO:0003954;NADH dehydrogenase activity;1.19132193092083e-07!GO:0008137;NADH dehydrogenase (ubiquinone) activity;1.19132193092083e-07!GO:0005643;nuclear pore;1.34480381575667e-07!GO:0046961;hydrogen ion transporting ATPase activity, rotational mechanism;1.74892145451283e-07!GO:0016651;oxidoreductase activity, acting on NADH or NADPH;1.75277625583822e-07!GO:0005768;endosome;1.82014647600464e-07!GO:0006413;translational initiation;2.10401890295503e-07!GO:0042254;ribosome biogenesis and assembly;2.27845986533699e-07!GO:0016740;transferase activity;2.41880061682905e-07!GO:0017038;protein import;2.74145140466246e-07!GO:0000139;Golgi membrane;2.86624502852338e-07!GO:0016879;ligase activity, forming carbon-nitrogen bonds;2.86624502852338e-07!GO:0012501;programmed cell death;3.31037913472741e-07!GO:0000279;M phase;3.56448029966511e-07!GO:0008654;phospholipid biosynthetic process;4.04783042421629e-07!GO:0006325;establishment and/or maintenance of chromatin architecture;4.49365359634238e-07!GO:0019787;small conjugating protein ligase activity;4.74234530845395e-07!GO:0009259;ribonucleotide metabolic process;5.42639212053046e-07!GO:0006915;apoptosis;6.50906046404875e-07!GO:0030120;vesicle coat;7.44056316573613e-07!GO:0030662;coated vesicle membrane;7.44056316573613e-07!GO:0043123;positive regulation of I-kappaB kinase/NF-kappaB cascade;7.69777068032512e-07!GO:0046933;hydrogen ion transporting ATP synthase activity, rotational mechanism;7.90432394851523e-07!GO:0048475;coated membrane;8.32730858016394e-07!GO:0030117;membrane coat;8.32730858016394e-07!GO:0006403;RNA localization;9.08869948555805e-07!GO:0006323;DNA packaging;1.09673412704004e-06!GO:0009060;aerobic respiration;1.10605584373971e-06!GO:0042775;organelle ATP synthesis coupled electron transport;1.11149192504667e-06!GO:0042773;ATP synthesis coupled electron transport;1.11149192504667e-06!GO:0050657;nucleic acid transport;1.12139080089278e-06!GO:0051236;establishment of RNA localization;1.12139080089278e-06!GO:0050658;RNA transport;1.12139080089278e-06!GO:0006163;purine nucleotide metabolic process;1.21149507035682e-06!GO:0030964;NADH dehydrogenase complex (quinone);1.2446281648703e-06!GO:0045271;respiratory chain complex I;1.2446281648703e-06!GO:0005747;mitochondrial respiratory chain complex I;1.2446281648703e-06!GO:0045786;negative regulation of progression through cell cycle;1.24768678873226e-06!GO:0009150;purine ribonucleotide metabolic process;1.38637980293863e-06!GO:0046930;pore complex;1.78965783562079e-06!GO:0050794;regulation of cellular process;1.82095057720278e-06!GO:0005813;centrosome;1.97025524429497e-06!GO:0043566;structure-specific DNA binding;2.00971149527761e-06!GO:0008219;cell death;2.03650538651472e-06!GO:0016265;death;2.03650538651472e-06!GO:0009056;catabolic process;2.1018067461883e-06!GO:0006366;transcription from RNA polymerase II promoter;2.31067768347855e-06!GO:0015986;ATP synthesis coupled proton transport;2.32310068166079e-06!GO:0015985;energy coupled proton transport, down electrochemical gradient;2.32310068166079e-06!GO:0043122;regulation of I-kappaB kinase/NF-kappaB cascade;2.36456680238815e-06!GO:0065002;intracellular protein transport across a membrane;2.42945497349403e-06!GO:0019829;cation-transporting ATPase activity;2.4970913841024e-06!GO:0006120;mitochondrial electron transport, NADH to ubiquinone;2.57578934069802e-06!GO:0016023;cytoplasmic membrane-bound vesicle;2.60342433789838e-06!GO:0005815;microtubule organizing center;2.60342433789838e-06!GO:0031988;membrane-bound vesicle;2.63627053879644e-06!GO:0051170;nuclear import;3.39963604167038e-06!GO:0045333;cellular respiration;3.43627217984411e-06!GO:0006164;purine nucleotide biosynthetic process;3.72655803744836e-06!GO:0009055;electron carrier activity;3.76950747714312e-06!GO:0016881;acid-amino acid ligase activity;3.9378949763313e-06!GO:0006606;protein import into nucleus;3.94832951590822e-06!GO:0055086;nucleobase, nucleoside and nucleotide metabolic process;3.98308487060356e-06!GO:0009152;purine ribonucleotide biosynthetic process;4.17190059332735e-06!GO:0009260;ribonucleotide biosynthetic process;4.5354775443326e-06!GO:0003714;transcription corepressor activity;5.85252965770721e-06!GO:0009199;ribonucleoside triphosphate metabolic process;7.21164951732196e-06!GO:0005770;late endosome;7.50208955026026e-06!GO:0006099;tricarboxylic acid cycle;9.12665685665331e-06!GO:0046356;acetyl-CoA catabolic process;9.12665685665331e-06!GO:0009141;nucleoside triphosphate metabolic process;9.50859089618707e-06!GO:0051789;response to protein stimulus;9.5292357929625e-06!GO:0006986;response to unfolded protein;9.5292357929625e-06!GO:0003724;RNA helicase activity;1.03804088996625e-05!GO:0009205;purine ribonucleoside triphosphate metabolic process;1.05862289414728e-05!GO:0009144;purine nucleoside triphosphate metabolic process;1.05862289414728e-05!GO:0031982;vesicle;1.11142871207457e-05!GO:0031410;cytoplasmic vesicle;1.11142871207457e-05!GO:0051188;cofactor biosynthetic process;1.17691544504104e-05!GO:0003697;single-stranded DNA binding;1.21485135675974e-05!GO:0009109;coenzyme catabolic process;1.3276442081886e-05!GO:0016564;transcription repressor activity;1.34734784673788e-05!GO:0009142;nucleoside triphosphate biosynthetic process;1.476742150942e-05!GO:0009201;ribonucleoside triphosphate biosynthetic process;1.476742150942e-05!GO:0051246;regulation of protein metabolic process;1.56255185780017e-05!GO:0051187;cofactor catabolic process;1.64274823565477e-05!GO:0046034;ATP metabolic process;1.69832523541563e-05!GO:0005798;Golgi-associated vesicle;1.79643771834865e-05!GO:0044440;endosomal part;1.79643771834865e-05!GO:0010008;endosome membrane;1.79643771834865e-05!GO:0009206;purine ribonucleoside triphosphate biosynthetic process;2.20667252728328e-05!GO:0009145;purine nucleoside triphosphate biosynthetic process;2.20667252728328e-05!GO:0051028;mRNA transport;2.22089197291928e-05!GO:0016469;proton-transporting two-sector ATPase complex;2.58320688301014e-05!GO:0016310;phosphorylation;2.9507515939367e-05!GO:0006754;ATP biosynthetic process;2.95574691698583e-05!GO:0006753;nucleoside phosphate metabolic process;2.95574691698583e-05!GO:0016568;chromatin modification;3.40626050265523e-05!GO:0005819;spindle;3.50890645439366e-05!GO:0006084;acetyl-CoA metabolic process;3.5591188480834e-05!GO:0031252;leading edge;3.60738877773986e-05!GO:0015931;nucleobase, nucleoside, nucleotide and nucleic acid transport;3.62088101483714e-05!GO:0016491;oxidoreductase activity;3.62913741100658e-05!GO:0031324;negative regulation of cellular metabolic process;3.7861609871505e-05!GO:0006793;phosphorus metabolic process;3.88214873882415e-05!GO:0006796;phosphate metabolic process;3.88214873882415e-05!GO:0006613;cotranslational protein targeting to membrane;4.02970721506709e-05!GO:0009117;nucleotide metabolic process;4.30961540513543e-05!GO:0005791;rough endoplasmic reticulum;4.34258899614922e-05!GO:0043623;cellular protein complex assembly;4.51473528699292e-05!GO:0046467;membrane lipid biosynthetic process;5.56870708243051e-05!GO:0030867;rough endoplasmic reticulum membrane;5.77211886077146e-05!GO:0007249;I-kappaB kinase/NF-kappaB cascade;6.32317653665454e-05!GO:0015078;hydrogen ion transmembrane transporter activity;6.74765515124381e-05!GO:0033116;ER-Golgi intermediate compartment membrane;7.17279067177081e-05!GO:0065004;protein-DNA complex assembly;7.83226701057212e-05!GO:0019899;enzyme binding;7.99864135822038e-05!GO:0007051;spindle organization and biogenesis;8.37370874222295e-05!GO:0016772;transferase activity, transferring phosphorus-containing groups;8.42395622405305e-05!GO:0008361;regulation of cell size;8.58757944035372e-05!GO:0005761;mitochondrial ribosome;8.69858721053582e-05!GO:0000313;organellar ribosome;8.69858721053582e-05!GO:0016049;cell growth;9.77505447780736e-05!GO:0046474;glycerophospholipid biosynthetic process;0.000107211557056046!GO:0046489;phosphoinositide biosynthetic process;0.000107395259000177!GO:0015405;P-P-bond-hydrolysis-driven transmembrane transporter activity;0.000110491820451246!GO:0015399;primary active transmembrane transporter activity;0.000110491820451246!GO:0007040;lysosome organization and biogenesis;0.000112395790722888!GO:0032446;protein modification by small protein conjugation;0.000113296255872706!GO:0006333;chromatin assembly or disassembly;0.000115253208319351!GO:0005905;coated pit;0.000119077682468593!GO:0006752;group transfer coenzyme metabolic process;0.000130513877812983!GO:0003755;peptidyl-prolyl cis-trans isomerase activity;0.000134714445606954!GO:0043069;negative regulation of programmed cell death;0.000140911291690393!GO:0008610;lipid biosynthetic process;0.000148734751959998!GO:0004576;oligosaccharyl transferase activity;0.000156345903085492!GO:0000785;chromatin;0.000158604842523115!GO:0016853;isomerase activity;0.000168936671771222!GO:0007010;cytoskeleton organization and biogenesis;0.00016903970238703!GO:0016859;cis-trans isomerase activity;0.000169358928362116!GO:0016567;protein ubiquitination;0.000171838665946375!GO:0009108;coenzyme biosynthetic process;0.000175146434299176!GO:0001558;regulation of cell growth;0.000180357616021731!GO:0019867;outer membrane;0.00018204462308375!GO:0009892;negative regulation of metabolic process;0.000190637596692756!GO:0045259;proton-transporting ATP synthase complex;0.000206067957565201!GO:0031968;organelle outer membrane;0.000209382550544001!GO:0043066;negative regulation of apoptosis;0.000209471151966797!GO:0030532;small nuclear ribonucleoprotein complex;0.000210339270421366!GO:0003690;double-stranded DNA binding;0.000217459636664408!GO:0005048;signal sequence binding;0.00021980237175441!GO:0007050;cell cycle arrest;0.00021980237175441!GO:0005839;proteasome core complex (sensu Eukaryota);0.000221676357470601!GO:0042625;ATPase activity, coupled to transmembrane movement of ions;0.000222797482231777!GO:0008186;RNA-dependent ATPase activity;0.000229931846502135!GO:0008250;oligosaccharyl transferase complex;0.000254528328654262!GO:0045454;cell redox homeostasis;0.000264155997527632!GO:0006612;protein targeting to membrane;0.000276483492404177!GO:0004579;dolichyl-diphosphooligosaccharide-protein glycotransferase activity;0.000276785052888924!GO:0005769;early endosome;0.000276785052888924!GO:0005667;transcription factor complex;0.000293028997883734!GO:0006364;rRNA processing;0.000302563060956844!GO:0016363;nuclear matrix;0.000303451951228241!GO:0007033;vacuole organization and biogenesis;0.000319920941622595!GO:0000151;ubiquitin ligase complex;0.000323238950593785!GO:0004177;aminopeptidase activity;0.000330700083809502!GO:0044420;extracellular matrix part;0.000347868861594165!GO:0030036;actin cytoskeleton organization and biogenesis;0.000348715316537961!GO:0006916;anti-apoptosis;0.0003519727421393!GO:0000245;spliceosome assembly;0.000358097312362185!GO:0031202;RNA splicing factor activity, transesterification mechanism;0.000358966799278045!GO:0016591;DNA-directed RNA polymerase II, holoenzyme;0.000396536937236211!GO:0043067;regulation of programmed cell death;0.000412598635305531!GO:0042981;regulation of apoptosis;0.000428367205657646!GO:0044262;cellular carbohydrate metabolic process;0.000468572940151458!GO:0050789;regulation of biological process;0.000488094582202247!GO:0003713;transcription coactivator activity;0.000511957349710276!GO:0016072;rRNA metabolic process;0.000533316522172035!GO:0046519;sphingoid metabolic process;0.000539814119576087!GO:0016197;endosome transport;0.000609717968310089!GO:0004298;threonine endopeptidase activity;0.000612635039181787!GO:0004004;ATP-dependent RNA helicase activity;0.000667944752881656!GO:0051329;interphase of mitotic cell cycle;0.000680607211627545!GO:0015980;energy derivation by oxidation of organic compounds;0.000763636338181!GO:0005581;collagen;0.000769275250133687!GO:0018196;peptidyl-asparagine modification;0.00080292866375134!GO:0018279;protein amino acid N-linked glycosylation via asparagine;0.00080292866375134!GO:0030663;COPI coated vesicle membrane;0.000804006903198505!GO:0030126;COPI vesicle coat;0.000804006903198505!GO:0016627;oxidoreductase activity, acting on the CH-CH group of donors;0.000830489000862561!GO:0045934;negative regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;0.000830489000862561!GO:0016779;nucleotidyltransferase activity;0.000880412459475071!GO:0030176;integral to endoplasmic reticulum membrane;0.000900837832699516!GO:0006643;membrane lipid metabolic process;0.000901248391103061!GO:0042626;ATPase activity, coupled to transmembrane movement of substances;0.000918534561526175!GO:0043492;ATPase activity, coupled to movement of substances;0.000969554786322244!GO:0030133;transport vesicle;0.00103382828406284!GO:0006357;regulation of transcription from RNA polymerase II promoter;0.00107258017243184!GO:0006672;ceramide metabolic process;0.00111620694780254!GO:0016820;hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances;0.00114490350031657!GO:0030134;ER to Golgi transport vesicle;0.00114955992031802!GO:0006509;membrane protein ectodomain proteolysis;0.00122800903896922!GO:0033619;membrane protein proteolysis;0.00122800903896922!GO:0016862;intramolecular oxidoreductase activity, interconverting keto- and enol-groups;0.00126983034360991!GO:0003924;GTPase activity;0.00135781873848546!GO:0015077;monovalent inorganic cation transmembrane transporter activity;0.001385510611008!GO:0030530;heterogeneous nuclear ribonucleoprotein complex;0.00146911603978633!GO:0051325;interphase;0.00153723997880541!GO:0006650;glycerophospholipid metabolic process;0.00154400453510071!GO:0033178;proton-transporting two-sector ATPase complex, catalytic domain;0.00164221250361936!GO:0006505;GPI anchor metabolic process;0.00168967222223462!GO:0016481;negative regulation of transcription;0.0017063121302722!GO:0006506;GPI anchor biosynthetic process;0.00171952929092274!GO:0005874;microtubule;0.00174312411738139!GO:0016563;transcription activator activity;0.00185350947452427!GO:0000775;chromosome, pericentric region;0.00190800533210558!GO:0006497;protein amino acid lipidation;0.00190852884037889!GO:0007052;mitotic spindle organization and biogenesis;0.002005225216614!GO:0006891;intra-Golgi vesicle-mediated transport;0.00202400524764357!GO:0051252;regulation of RNA metabolic process;0.00208452397794111!GO:0007160;cell-matrix adhesion;0.00209405899727423!GO:0000075;cell cycle checkpoint;0.00209683262961555!GO:0007005;mitochondrion organization and biogenesis;0.00213661901106501!GO:0030029;actin filament-based process;0.00221777285751987!GO:0005741;mitochondrial outer membrane;0.00228200210985684!GO:0006334;nucleosome assembly;0.00248135013047066!GO:0051168;nuclear export;0.00255439290969762!GO:0000059;protein import into nucleus, docking;0.00260866542691403!GO:0051920;peroxiredoxin activity;0.00269919723484939!GO:0005637;nuclear inner membrane;0.00270191677937592!GO:0008047;enzyme activator activity;0.00270668351894521!GO:0031589;cell-substrate adhesion;0.00281904744839016!GO:0030137;COPI-coated vesicle;0.00281904744839016!GO:0005774;vacuolar membrane;0.00284361192670444!GO:0006261;DNA-dependent DNA replication;0.00286726593941129!GO:0030127;COPII vesicle coat;0.00289932703905497!GO:0005885;Arp2/3 protein complex;0.00289932703905497!GO:0012507;ER to Golgi transport vesicle membrane;0.00289932703905497!GO:0051427;hormone receptor binding;0.00293604072284427!GO:0030384;phosphoinositide metabolic process;0.00297121076037618!GO:0016281;eukaryotic translation initiation factor 4F complex;0.00317800700008619!GO:0048522;positive regulation of cellular process;0.00327975350523872!GO:0045261;proton-transporting ATP synthase complex, catalytic core F(1);0.00351046231834003!GO:0042158;lipoprotein biosynthetic process;0.00353290953765815!GO:0006414;translational elongation;0.00413140595256774!GO:0006091;generation of precursor metabolites and energy;0.0041781459525387!GO:0006402;mRNA catabolic process;0.00424092713059569!GO:0031497;chromatin assembly;0.00441107230256655!GO:0003756;protein disulfide isomerase activity;0.00449115919996012!GO:0016864;intramolecular oxidoreductase activity, transposing S-S bonds;0.00449115919996012!GO:0043021;ribonucleoprotein binding;0.00467055660283236!GO:0006892;post-Golgi vesicle-mediated transport;0.00480776770324338!GO:0035257;nuclear hormone receptor binding;0.00500494154045611!GO:0003684;damaged DNA binding;0.00519672125388385!GO:0003729;mRNA binding;0.00527664246504637!GO:0043284;biopolymer biosynthetic process;0.00562953455340986!GO:0006984;ER-nuclear signaling pathway;0.00593281315297035!GO:0008484;sulfuric ester hydrolase activity;0.00594591314496495!GO:0019752;carboxylic acid metabolic process;0.00594751665433826!GO:0005852;eukaryotic translation initiation factor 3 complex;0.0059819961147192!GO:0000776;kinetochore;0.00603939294602143!GO:0016044;membrane organization and biogenesis;0.00614152227594432!GO:0040008;regulation of growth;0.00627905170792934!GO:0005753;mitochondrial proton-transporting ATP synthase complex;0.00636977905785164!GO:0007243;protein kinase cascade;0.00652546711964954!GO:0009967;positive regulation of signal transduction;0.00652546711964954!GO:0031124;mRNA 3'-end processing;0.00696599041024041!GO:0006950;response to stress;0.00697474508026703!GO:0006082;organic acid metabolic process;0.00699748333633608!GO:0000226;microtubule cytoskeleton organization and biogenesis;0.0071651205887966!GO:0016126;sterol biosynthetic process;0.00717994570608996!GO:0030132;clathrin coat of coated pit;0.0072921614119524!GO:0050662;coenzyme binding;0.00748374494329165!GO:0001527;microfibril;0.0076012767822648!GO:0003678;DNA helicase activity;0.00774042240346643!GO:0044437;vacuolar part;0.00775057475816335!GO:0030027;lamellipodium;0.00792626564464343!GO:0019843;rRNA binding;0.00800973258310681!GO:0009165;nucleotide biosynthetic process;0.00810383475172126!GO:0017166;vinculin binding;0.00825995930145861!GO:0015923;mannosidase activity;0.00844111806369174!GO:0030659;cytoplasmic vesicle membrane;0.00885963721522113!GO:0044255;cellular lipid metabolic process;0.00888892770821716!GO:0016706;oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors;0.00891083274018275!GO:0007093;mitotic cell cycle checkpoint;0.00895171270649477!GO:0016780;phosphotransferase activity, for other substituted phosphate groups;0.00944872317042634!GO:0051045;negative regulation of membrane protein ectodomain proteolysis;0.00952011672007921!GO:0051043;regulation of membrane protein ectodomain proteolysis;0.00952011672007921!GO:0008139;nuclear localization sequence binding;0.00960410119808627!GO:0005765;lysosomal membrane;0.0098143760580536!GO:0006289;nucleotide-excision repair;0.00985918786610628!GO:0030118;clathrin coat;0.00992107065040909!GO:0008094;DNA-dependent ATPase activity;0.0100471653654875!GO:0004287;prolyl oligopeptidase activity;0.0101631841432393!GO:0003682;chromatin binding;0.0103232690557029!GO:0001726;ruffle;0.0106578338988826!GO:0022408;negative regulation of cell-cell adhesion;0.0107906566042777!GO:0001872;zymosan binding;0.0108400149084088!GO:0001878;response to yeast;0.0108400149084088!GO:0048471;perinuclear region of cytoplasm;0.0112734849437254!GO:0044433;cytoplasmic vesicle part;0.0113769590360966!GO:0005096;GTPase activator activity;0.0114001427112048!GO:0048500;signal recognition particle;0.0123168870150144!GO:0004674;protein serine/threonine kinase activity;0.0123788296338428!GO:0015631;tubulin binding;0.0124160867981787!GO:0006644;phospholipid metabolic process;0.0125207564283749!GO:0005838;proteasome regulatory particle (sensu Eukaryota);0.0130228788922245!GO:0030145;manganese ion binding;0.0130690794788492!GO:0006665;sphingolipid metabolic process;0.0131637199155259!GO:0007034;vacuolar transport;0.0135994889627657!GO:0007041;lysosomal transport;0.0138596079214114!GO:0030658;transport vesicle membrane;0.0140160493083746!GO:0051128;regulation of cellular component organization and biogenesis;0.0140915084817841!GO:0032200;telomere organization and biogenesis;0.0141864169185439!GO:0000723;telomere maintenance;0.0141864169185439!GO:0000030;mannosyltransferase activity;0.0146536692917986!GO:0003923;GPI-anchor transamidase activity;0.0150250327529376!GO:0016255;attachment of GPI anchor to protein;0.0150250327529376!GO:0042765;GPI-anchor transamidase complex;0.0150250327529376!GO:0019798;procollagen-proline dioxygenase activity;0.0155073342960992!GO:0001953;negative regulation of cell-matrix adhesion;0.016517024606609!GO:0033559;unsaturated fatty acid metabolic process;0.0167882614747989!GO:0006636;unsaturated fatty acid biosynthetic process;0.0167882614747989!GO:0065009;regulation of a molecular function;0.0170532691647564!GO:0006302;double-strand break repair;0.0170725329905062!GO:0001952;regulation of cell-matrix adhesion;0.0171744622684759!GO:0007017;microtubule-based process;0.0173732496112875!GO:0046483;heterocycle metabolic process;0.0179404750534505!GO:0000922;spindle pole;0.0180993268359587!GO:0051287;NAD binding;0.0182627297963478!GO:0030149;sphingolipid catabolic process;0.0186461654822436!GO:0004563;beta-N-acetylhexosaminidase activity;0.0187461141191159!GO:0007178;transmembrane receptor protein serine/threonine kinase signaling pathway;0.0196137596075451!GO:0000049;tRNA binding;0.0196558024720586!GO:0031543;peptidyl-proline dioxygenase activity;0.0197848133852123!GO:0051348;negative regulation of transferase activity;0.0198867806612654!GO:0005586;collagen type III;0.0199174257666698!GO:0003746;translation elongation factor activity;0.020064252567342!GO:0000287;magnesium ion binding;0.0201188528278738!GO:0006818;hydrogen transport;0.0202977822036335!GO:0012506;vesicle membrane;0.0203869843818528!GO:0008092;cytoskeletal protein binding;0.0203975857535199!GO:0006378;mRNA polyadenylation;0.0204271150829593!GO:0051270;regulation of cell motility;0.0208143919275971!GO:0031301;integral to organelle membrane;0.0208452978475831!GO:0006516;glycoprotein catabolic process;0.0208850925445243!GO:0043488;regulation of mRNA stability;0.0211146358040651!GO:0043487;regulation of RNA stability;0.0211146358040651!GO:0031418;L-ascorbic acid binding;0.0211732846676631!GO:0031901;early endosome membrane;0.0212793563258723!GO:0017015;regulation of transforming growth factor beta receptor signaling pathway;0.0214923412638153!GO:0015992;proton transport;0.0216460086483586!GO:0065007;biological regulation;0.0217478142288398!GO:0016765;transferase activity, transferring alkyl or aryl (other than methyl) groups;0.021806638217713!GO:0019222;regulation of metabolic process;0.0219529640952096!GO:0006890;retrograde vesicle-mediated transport, Golgi to ER;0.0222046009933518!GO:0005832;chaperonin-containing T-complex;0.0222701663464962!GO:0031123;RNA 3'-end processing;0.022596016736596!GO:0006614;SRP-dependent cotranslational protein targeting to membrane;0.022596016736596!GO:0045047;protein targeting to ER;0.022596016736596!GO:0016860;intramolecular oxidoreductase activity;0.0227764844957944!GO:0006607;NLS-bearing substrate import into nucleus;0.0227905389779608!GO:0004228;gelatinase A activity;0.0232147922397472!GO:0001955;blood vessel maturation;0.0232147922397472!GO:0000781;chromosome, telomeric region;0.0235503088626196!GO:0001573;ganglioside metabolic process;0.0240682644725215!GO:0008033;tRNA processing;0.0242081084284545!GO:0016408;C-acyltransferase activity;0.0242583330390098!GO:0000082;G1/S transition of mitotic cell cycle;0.0243703765442693!GO:0031902;late endosome membrane;0.0244669296995838!GO:0006695;cholesterol biosynthetic process;0.0244669296995838!GO:0048037;cofactor binding;0.0245365308384332!GO:0005520;insulin-like growth factor binding;0.0248151117828995!GO:0033673;negative regulation of kinase activity;0.0248151117828995!GO:0006469;negative regulation of protein kinase activity;0.0248151117828995!GO:0030521;androgen receptor signaling pathway;0.0248591757587109!GO:0006310;DNA recombination;0.0256685329302041!GO:0005876;spindle microtubule;0.0264476689946571!GO:0008147;structural constituent of bone;0.0265797170861247!GO:0008312;7S RNA binding;0.0265797170861247!GO:0030968;unfolded protein response;0.0271156989475798!GO:0000079;regulation of cyclin-dependent protein kinase activity;0.0272904662620453!GO:0030660;Golgi-associated vesicle membrane;0.0273450052662461!GO:0031072;heat shock protein binding;0.0275691222966738!GO:0016301;kinase activity;0.0275864579904174!GO:0005657;replication fork;0.0276489088889064!GO:0007179;transforming growth factor beta receptor signaling pathway;0.0276489088889064!GO:0006401;RNA catabolic process;0.0276489088889064!GO:0016679;oxidoreductase activity, acting on diphenols and related substances as donors;0.0277113858066265!GO:0016681;oxidoreductase activity, acting on diphenols and related substances as donors, cytochrome as acceptor;0.0277113858066265!GO:0008121;ubiquinol-cytochrome-c reductase activity;0.0277113858066265!GO:0051539;4 iron, 4 sulfur cluster binding;0.0277611383837187!GO:0007162;negative regulation of cell adhesion;0.0278873521351199!GO:0016125;sterol metabolic process;0.0279397439582143!GO:0030119;AP-type membrane coat adaptor complex;0.0279482078841533!GO:0000339;RNA cap binding;0.0286373045271728!GO:0005975;carbohydrate metabolic process;0.0288129297774991!GO:0045792;negative regulation of cell size;0.02924936516568!GO:0001516;prostaglandin biosynthetic process;0.0300745920716711!GO:0046457;prostanoid biosynthetic process;0.0300745920716711!GO:0005525;GTP binding;0.0307627578983957!GO:0000096;sulfur amino acid metabolic process;0.0307627578983957!GO:0030518;steroid hormone receptor signaling pathway;0.0308071276530003!GO:0005762;mitochondrial large ribosomal subunit;0.0308490422616939!GO:0000315;organellar large ribosomal subunit;0.0308490422616939!GO:0030032;lamellipodium biogenesis;0.0308490422616939!GO:0030433;ER-associated protein catabolic process;0.0313145683240741!GO:0006515;misfolded or incompletely synthesized protein catabolic process;0.0313145683240741!GO:0005862;muscle thin filament tropomyosin;0.0315666683430501!GO:0031227;intrinsic to endoplasmic reticulum membrane;0.0317653291202207!GO:0003711;transcription elongation regulator activity;0.0317653291202207!GO:0030308;negative regulation of cell growth;0.0319064498537258!GO:0007088;regulation of mitosis;0.0320765820728399!GO:0004656;procollagen-proline 4-dioxygenase activity;0.0322259616207128!GO:0031545;peptidyl-proline 4-dioxygenase activity;0.0322259616207128!GO:0008475;procollagen-lysine 5-dioxygenase activity;0.0331388692120702!GO:0022890;inorganic cation transmembrane transporter activity;0.0331388692120702!GO:0032906;transforming growth factor-beta2 production;0.0331388692120702!GO:0032909;regulation of transforming growth factor-beta2 production;0.0331388692120702!GO:0004003;ATP-dependent DNA helicase activity;0.034241475028288!GO:0006520;amino acid metabolic process;0.0344057618561634!GO:0005784;translocon complex;0.0353487979456622!GO:0005786;signal recognition particle, endoplasmic reticulum targeting;0.03550854758371!GO:0005869;dynactin complex;0.0356960756508152!GO:0030131;clathrin adaptor complex;0.0366323133490616!GO:0043433;negative regulation of transcription factor activity;0.0366323133490616!GO:0042802;identical protein binding;0.0377027410889137!GO:0016628;oxidoreductase activity, acting on the CH-CH group of donors, NAD or NADP as acceptor;0.0381548418845567!GO:0042157;lipoprotein metabolic process;0.0382078029079321!GO:0035258;steroid hormone receptor binding;0.0387762089246476!GO:0019377;glycolipid catabolic process;0.0391769967316543!GO:0007167;enzyme linked receptor protein signaling pathway;0.039380119878271!GO:0031529;ruffle organization and biogenesis;0.0398698313864089!GO:0003899;DNA-directed RNA polymerase activity;0.0410235770069143!GO:0007030;Golgi organization and biogenesis;0.0411055726518792!GO:0007004;telomere maintenance via telomerase;0.0411055726518792!GO:0031625;ubiquitin protein ligase binding;0.0414329882194804!GO:0008238;exopeptidase activity;0.0416283802163743!GO:0048518;positive regulation of biological process;0.0418520564769113!GO:0048487;beta-tubulin binding;0.0421055953658902!GO:0050750;low-density lipoprotein receptor binding;0.0423912041631342!GO:0006405;RNA export from nucleus;0.0424738324395661!GO:0045935;positive regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;0.0430147185552037!GO:0008022;protein C-terminus binding;0.0438417616842786!GO:0051059;NF-kappaB binding;0.0442322733788701!GO:0016721;oxidoreductase activity, acting on superoxide radicals as acceptor;0.0443620028285422!GO:0004784;superoxide dismutase activity;0.0443620028285422!GO:0005604;basement membrane;0.0443913262985947!GO:0000209;protein polyubiquitination;0.0444452448262261!GO:0051271;negative regulation of cell motility;0.0446725380116299!GO:0005684;U2-dependent spliceosome;0.0455252388813495!GO:0006518;peptide metabolic process;0.0459138360249536!GO:0005100;Rho GTPase activator activity;0.0459795913629939!GO:0004559;alpha-mannosidase activity;0.0459795913629939!GO:0019511;peptidyl-proline hydroxylation;0.0465879304922615!GO:0018208;peptidyl-proline modification;0.0465879304922615!GO:0019471;4-hydroxyproline metabolic process;0.0465879304922615!GO:0018401;peptidyl-proline hydroxylation to 4-hydroxy-L-proline;0.0465879304922615!GO:0006693;prostaglandin metabolic process;0.0469614002545428!GO:0006692;prostanoid metabolic process;0.0469614002545428!GO:0044452;nucleolar part;0.0474617011052281!GO:0051052;regulation of DNA metabolic process;0.0477564912347548!GO:0001666;response to hypoxia;0.0478772286522744!GO:0005901;caveola;0.0478772286522744!GO:0007059;chromosome segregation;0.0479882876613035!GO:0008234;cysteine-type peptidase activity;0.0480353414114551!GO:0035035;histone acetyltransferase binding;0.0483157567787568!GO:0006897;endocytosis;0.048665722673697!GO:0010324;membrane invagination;0.048665722673697!GO:0006508;proteolysis;0.048665722673697!GO:0006352;transcription initiation;0.048665722673697!GO:0046914;transition metal ion binding;0.0489967795522158!GO:0006740;NADPH regeneration;0.0494166641165716!GO:0006098;pentose-phosphate shunt;0.0494166641165716!GO:0006541;glutamine metabolic process;0.0496694663845792 | |||
|sample_id=14311 | |sample_id=14311 | ||
|sample_note= | |sample_note= | ||
| Line 76: | Line 104: | ||
|sample_tissue=aorta | |sample_tissue=aorta | ||
|top_motifs=EN1,2:2.50636393251;ALX4:2.41201517532;TAL1_TCF{3,4,12}:2.32348209803;XBP1:2.25880822024;HIF1A:2.1534338928;NKX3-1:2.11716130093;MYBL2:2.0648902996;ESR1:1.98597532661;HOX{A5,B5}:1.90440291481;UFEwm:1.78699163606;HMX1:1.78229946014;EVI1:1.76957610503;TEAD1:1.61826354389;IKZF1:1.57366762766;EBF1:1.5635909017;GLI1..3:1.54380831069;GCM1,2:1.44275861548;RXR{A,B,G}:1.32269200995;NKX2-1,4:1.2703263704;TLX1..3_NFIC{dimer}:1.26709106059;TLX2:1.26139263158;RXRA_VDR{dimer}:1.25258042331;KLF4:1.23470211418;HOX{A4,D4}:1.2038458059;EP300:1.17778570664;ATF6:1.17348263083;PRDM1:1.15393255138;HMGA1,2:1.14126368406;SOX17:1.13929698489;NFE2L1:1.13441524406;HSF1,2:1.07528265069;GTF2A1,2:0.991714955517;MTE{core}:0.990392342127;GTF2I:0.987554625812;FOXL1:0.980180653158;NANOG{mouse}:0.964992123683;POU3F1..4:0.934727039176;MAZ:0.910105010875;SMAD1..7,9:0.903184975728;MAFB:0.897107148587;GATA4:0.890875484393;MZF1:0.890082395715;TP53:0.867569480587;ZNF384:0.835741075602;AHR_ARNT_ARNT2:0.83456809888;MYFfamily:0.798166373447;XCPE1{core}:0.786525500574;ZIC1..3:0.779906987746;SPZ1:0.776006336841;GZF1:0.758557206163;GFI1B:0.754664519726;PAX1,9:0.746525308545;ZNF423:0.683339585445;TOPORS:0.64810772007;CDC5L:0.642666582208;NR3C1:0.640608909855;SP1:0.630935571608;SRF:0.607979983234;SREBF1,2:0.603483722181;STAT1,3:0.586735982249;bHLH_family:0.580254265118;RREB1:0.571388449881;PATZ1:0.567237798328;LHX3,4:0.553717681439;NFATC1..3:0.549121577343;TEF:0.527789387678;HLF:0.523524089107;ELK1,4_GABP{A,B1}:0.522266425258;TFAP4:0.521369333126;SOX2:0.517718273655;ZNF238:0.512553004839;ZNF143:0.499830830393;NRF1:0.472012734842;MED-1{core}:0.459136771121;PAX5:0.426762428233;AIRE:0.421394979547;HOX{A6,A7,B6,B7}:0.412645951948;ZBTB6:0.409875734713;GFI1:0.386080329137;PAX4:0.383561009611;MYB:0.376004552641;CREB1:0.310302158382;STAT2,4,6:0.30927061486;PAX3,7:0.259348484068;NKX3-2:0.258693243473;CEBPA,B_DDIT3:0.258123624661;DBP:0.22165016237;HES1:0.201744449254;FOXN1:0.196165224658;NFY{A,B,C}:0.191350697424;TFAP2B:0.17534783734;ZFP161:0.171096007086;FOSL2:0.154988933599;AR:0.152090284727;PAX8:0.15022639386;NKX2-2,8:0.127251774739;RFX1:0.122456168773;PAX2:0.122303970593;ARID5B:0.121381074845;ADNP_IRX_SIX_ZHX:0.108992558294;HIC1:0.0870361423493;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:0.0846763832379;ZNF148:0.084549131163;TBX4,5:0.0801737171224;BPTF:0.0760568901477;ZBTB16:0.0633241668797;NHLH1,2:0.0507562370892;NFE2L2:0.036328081737;TFAP2{A,C}:0.0267379030765;FOXP1:0.0165204446476;FOXD3:0.00152431110469;FOS_FOS{B,L1}_JUN{B,D}:-0.0100085489528;YY1:-0.0136147090772;ATF5_CREB3:-0.0173634579613;E2F1..5:-0.0381345098384;TFDP1:-0.0455427280598;BACH2:-0.046350975426;ATF4:-0.0648868197166;SOX{8,9,10}:-0.0727766165302;HNF1A:-0.0919281262238;HBP1_HMGB_SSRP1_UBTF:-0.0923879918441;FOXO1,3,4:-0.097551070688;IRF1,2:-0.152182050798;NFIX:-0.187396905474;ELF1,2,4:-0.194132976412;NFE2:-0.224872936905;POU1F1:-0.235652944757;VSX1,2:-0.245322462562;ATF2:-0.264713774047;NR1H4:-0.271085546371;RUNX1..3:-0.281514328598;POU5F1:-0.311374292206;TBP:-0.339633824189;PPARG:-0.340669160887;IRF7:-0.342576106251;EGR1..3:-0.353527392585;LEF1_TCF7_TCF7L1,2:-0.366543267477;FOX{D1,D2}:-0.371981987978;HOXA9_MEIS1:-0.394284364151;MEF2{A,B,C,D}:-0.406933377512;HAND1,2:-0.420752951893;ONECUT1,2:-0.422119570795;LMO2:-0.432798238996;ALX1:-0.434640303799;SPI1:-0.469107883785;HNF4A_NR2F1,2:-0.470043721704;SOX5:-0.482765723459;TGIF1:-0.493909737214;CDX1,2,4:-0.496032706119;RBPJ:-0.518726779234;TFCP2:-0.529194007758;GATA6:-0.542168971304;NFKB1_REL_RELA:-0.545456060932;REST:-0.579096335677;PAX6:-0.633571826347;ETS1,2:-0.646542121882;FOXA2:-0.650382380163;SPIB:-0.679592352245;NFIL3:-0.743714730979;NR6A1:-0.754445595014;FOX{I1,J2}:-0.781462657878;PITX1..3:-0.817529884657;BREu{core}:-0.862756975991;NKX6-1,2:-0.874268866378;FOXP3:-0.876446212368;PBX1:-0.881021006717;MTF1:-0.885342344658;CRX:-0.933738955043;POU6F1:-0.998345891869;JUN:-1.00118645749;RFX2..5_RFXANK_RFXAP:-1.03660078638;ESRRA:-1.05407514195;DMAP1_NCOR{1,2}_SMARC:-1.05679546644;SNAI1..3:-1.11271379249;ZEB1:-1.19306389847;NANOG:-1.2286190027;STAT5{A,B}:-1.30387882031;NKX2-3_NKX2-5:-1.36109052085;PRRX1,2:-1.38384588557;CUX2:-1.38920767702;NR5A1,2:-1.39283412505;POU2F1..3:-1.44419157472;OCT4_SOX2{dimer}:-1.4691240292;IKZF2:-1.47391223327;MYOD1:-1.48704947604;RXR{A,B,G}_{NR1H2,PPAR}dimers:-1.56113208187;FOX{F1,F2,J1}:-1.6402652683;RORA:-1.70047037866;FOXM1:-1.86232708379;PDX1:-1.87014265199;T:-2.46593517676;FOXQ1:-2.57385225708 | |top_motifs=EN1,2:2.50636393251;ALX4:2.41201517532;TAL1_TCF{3,4,12}:2.32348209803;XBP1:2.25880822024;HIF1A:2.1534338928;NKX3-1:2.11716130093;MYBL2:2.0648902996;ESR1:1.98597532661;HOX{A5,B5}:1.90440291481;UFEwm:1.78699163606;HMX1:1.78229946014;EVI1:1.76957610503;TEAD1:1.61826354389;IKZF1:1.57366762766;EBF1:1.5635909017;GLI1..3:1.54380831069;GCM1,2:1.44275861548;RXR{A,B,G}:1.32269200995;NKX2-1,4:1.2703263704;TLX1..3_NFIC{dimer}:1.26709106059;TLX2:1.26139263158;RXRA_VDR{dimer}:1.25258042331;KLF4:1.23470211418;HOX{A4,D4}:1.2038458059;EP300:1.17778570664;ATF6:1.17348263083;PRDM1:1.15393255138;HMGA1,2:1.14126368406;SOX17:1.13929698489;NFE2L1:1.13441524406;HSF1,2:1.07528265069;GTF2A1,2:0.991714955517;MTE{core}:0.990392342127;GTF2I:0.987554625812;FOXL1:0.980180653158;NANOG{mouse}:0.964992123683;POU3F1..4:0.934727039176;MAZ:0.910105010875;SMAD1..7,9:0.903184975728;MAFB:0.897107148587;GATA4:0.890875484393;MZF1:0.890082395715;TP53:0.867569480587;ZNF384:0.835741075602;AHR_ARNT_ARNT2:0.83456809888;MYFfamily:0.798166373447;XCPE1{core}:0.786525500574;ZIC1..3:0.779906987746;SPZ1:0.776006336841;GZF1:0.758557206163;GFI1B:0.754664519726;PAX1,9:0.746525308545;ZNF423:0.683339585445;TOPORS:0.64810772007;CDC5L:0.642666582208;NR3C1:0.640608909855;SP1:0.630935571608;SRF:0.607979983234;SREBF1,2:0.603483722181;STAT1,3:0.586735982249;bHLH_family:0.580254265118;RREB1:0.571388449881;PATZ1:0.567237798328;LHX3,4:0.553717681439;NFATC1..3:0.549121577343;TEF:0.527789387678;HLF:0.523524089107;ELK1,4_GABP{A,B1}:0.522266425258;TFAP4:0.521369333126;SOX2:0.517718273655;ZNF238:0.512553004839;ZNF143:0.499830830393;NRF1:0.472012734842;MED-1{core}:0.459136771121;PAX5:0.426762428233;AIRE:0.421394979547;HOX{A6,A7,B6,B7}:0.412645951948;ZBTB6:0.409875734713;GFI1:0.386080329137;PAX4:0.383561009611;MYB:0.376004552641;CREB1:0.310302158382;STAT2,4,6:0.30927061486;PAX3,7:0.259348484068;NKX3-2:0.258693243473;CEBPA,B_DDIT3:0.258123624661;DBP:0.22165016237;HES1:0.201744449254;FOXN1:0.196165224658;NFY{A,B,C}:0.191350697424;TFAP2B:0.17534783734;ZFP161:0.171096007086;FOSL2:0.154988933599;AR:0.152090284727;PAX8:0.15022639386;NKX2-2,8:0.127251774739;RFX1:0.122456168773;PAX2:0.122303970593;ARID5B:0.121381074845;ADNP_IRX_SIX_ZHX:0.108992558294;HIC1:0.0870361423493;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:0.0846763832379;ZNF148:0.084549131163;TBX4,5:0.0801737171224;BPTF:0.0760568901477;ZBTB16:0.0633241668797;NHLH1,2:0.0507562370892;NFE2L2:0.036328081737;TFAP2{A,C}:0.0267379030765;FOXP1:0.0165204446476;FOXD3:0.00152431110469;FOS_FOS{B,L1}_JUN{B,D}:-0.0100085489528;YY1:-0.0136147090772;ATF5_CREB3:-0.0173634579613;E2F1..5:-0.0381345098384;TFDP1:-0.0455427280598;BACH2:-0.046350975426;ATF4:-0.0648868197166;SOX{8,9,10}:-0.0727766165302;HNF1A:-0.0919281262238;HBP1_HMGB_SSRP1_UBTF:-0.0923879918441;FOXO1,3,4:-0.097551070688;IRF1,2:-0.152182050798;NFIX:-0.187396905474;ELF1,2,4:-0.194132976412;NFE2:-0.224872936905;POU1F1:-0.235652944757;VSX1,2:-0.245322462562;ATF2:-0.264713774047;NR1H4:-0.271085546371;RUNX1..3:-0.281514328598;POU5F1:-0.311374292206;TBP:-0.339633824189;PPARG:-0.340669160887;IRF7:-0.342576106251;EGR1..3:-0.353527392585;LEF1_TCF7_TCF7L1,2:-0.366543267477;FOX{D1,D2}:-0.371981987978;HOXA9_MEIS1:-0.394284364151;MEF2{A,B,C,D}:-0.406933377512;HAND1,2:-0.420752951893;ONECUT1,2:-0.422119570795;LMO2:-0.432798238996;ALX1:-0.434640303799;SPI1:-0.469107883785;HNF4A_NR2F1,2:-0.470043721704;SOX5:-0.482765723459;TGIF1:-0.493909737214;CDX1,2,4:-0.496032706119;RBPJ:-0.518726779234;TFCP2:-0.529194007758;GATA6:-0.542168971304;NFKB1_REL_RELA:-0.545456060932;REST:-0.579096335677;PAX6:-0.633571826347;ETS1,2:-0.646542121882;FOXA2:-0.650382380163;SPIB:-0.679592352245;NFIL3:-0.743714730979;NR6A1:-0.754445595014;FOX{I1,J2}:-0.781462657878;PITX1..3:-0.817529884657;BREu{core}:-0.862756975991;NKX6-1,2:-0.874268866378;FOXP3:-0.876446212368;PBX1:-0.881021006717;MTF1:-0.885342344658;CRX:-0.933738955043;POU6F1:-0.998345891869;JUN:-1.00118645749;RFX2..5_RFXANK_RFXAP:-1.03660078638;ESRRA:-1.05407514195;DMAP1_NCOR{1,2}_SMARC:-1.05679546644;SNAI1..3:-1.11271379249;ZEB1:-1.19306389847;NANOG:-1.2286190027;STAT5{A,B}:-1.30387882031;NKX2-3_NKX2-5:-1.36109052085;PRRX1,2:-1.38384588557;CUX2:-1.38920767702;NR5A1,2:-1.39283412505;POU2F1..3:-1.44419157472;OCT4_SOX2{dimer}:-1.4691240292;IKZF2:-1.47391223327;MYOD1:-1.48704947604;RXR{A,B,G}_{NR1H2,PPAR}dimers:-1.56113208187;FOX{F1,F2,J1}:-1.6402652683;RORA:-1.70047037866;FOXM1:-1.86232708379;PDX1:-1.87014265199;T:-2.46593517676;FOXQ1:-2.57385225708 | ||
|xref= | |||
|zenbu_report=https://fantom.gsc.riken.jp/zenbu/reports/#miRNA_expression_atlas_human;search_select_hide=table111:FF:14311-155C9;search_select_hide=table117:FF:14311-155C9 | |||
}} | }} | ||
Latest revision as of 19:06, 4 June 2020
| Name: | Fibroblast - Aortic Adventitial, donor3 (nuclear fraction) |
|---|---|
| Species: | Human (Homo sapiens) |
| Library ID: | CNhs12400 |
| Sample type: | fractionations and perturbations |
| Genomic View: | UCSC |
| RefEX: | Specific genes |
| CAGEd-oPOSSUM: | link |
| ZENBU report : | link |
| Additional information | ||||||||||||||||||||||||||||
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Sample information
RNA information
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| CAGE Accession numbers | ||||||||||||||||||||||||||||||||||||||||||||||
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| Download raw sequence, BAM & CTSS | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
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| RNA-Seq Accession numbers | ||||||||||||||||||||||||||||||||
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Relative expression to median (log10)
Transcription factors with enriched expression in this sampleRanked list of transcription factor promoter expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.
Co-expression clusters with enriched expression in this sampleRanked list of co-expression cluster expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed. <br>Analyst:NA <br><br>link to dataset.<br>data
Repeat families with enriched expression in this sample<b>Summary:</b>Ranked list of repeat family expression in this sample relative tothe median expression in the FANTOM5 collection is shown. Value is log10transformed.<br><b>Analyst:</b>NA<br><br>link to dataset.<br>data
TFBS(DNA)motifs over-represented in proximal region of promoters active in this sample
JASPAR motifs<b>Summary:</b>Association of JASPAR motif to the promoter expression in thissample. Pearson's correlation between the number of TFBSs estimated byusing the position-weight matrix for each promoter and its expression isexpressed as Z-score by taking the ones based on random position-weightmatrix, and the tail probability of the normal distribution correspondingto the Z-score is taken as the resulting P-value. Lower P-value indicatesmore (non-random) association of the motif to promoter expression<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data
library id: CNhs12400
FANTOM5 phase1 novel unique motifs<b>Summary:</b>Association of the 169 novel and unique motifs discovered in FANTOM5 phase1 in this sample. Among the de-novo motifs discovered by DMF, HOMER,ChIPMunk, and ScanAll, only novel motifs are selected after comparison with known motif sets, and their clustering based on MACRO-APE resulted in169 novel and unique motifs. Their association to the promoter expression is evaluated in the same way to the JASPAR motif above<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data
library id: CNhs12400
| Novel motif | Logo | P-value |
|---|---|---|
| 1 | 1 | 0.0759 |
| 10 | 10 | 0.338 |
| 100 | 100 | 0.929 |
| 101 | 101 | 0.405 |
| 102 | 102 | 0.358 |
| 103 | 103 | 0.372 |
| 104 | 104 | 0.994 |
| 105 | 105 | 0.0536 |
| 106 | 106 | 0.0131 |
| 107 | 107 | 0.607 |
| 108 | 108 | 0.591 |
| 109 | 109 | 0.119 |
| 11 | 11 | 0.145 |
| 110 | 110 | 0.803 |
| 111 | 111 | 0.0193 |
| 112 | 112 | 0.42 |
| 113 | 113 | 0.0483 |
| 114 | 114 | 0.103 |
| 115 | 115 | 0.098 |
| 116 | 116 | 0.912 |
| 117 | 117 | 0.354 |
| 118 | 118 | 0.44 |
| 119 | 119 | 0.0738 |
| 12 | 12 | 0.416 |
| 120 | 120 | 0.965 |
| 121 | 121 | 0.93 |
| 122 | 122 | 0.061 |
| 123 | 123 | 0.00559 |
| 124 | 124 | 0.0348 |
| 125 | 125 | 0.174 |
| 126 | 126 | 0.203 |
| 127 | 127 | 0.0217 |
| 128 | 128 | 0.0424 |
| 129 | 129 | 0.213 |
| 13 | 13 | 0.335 |
| 130 | 130 | 0.974 |
| 131 | 131 | 0.893 |
| 132 | 132 | 0.503 |
| 133 | 133 | 0.853 |
| 134 | 134 | 0.866 |
| 135 | 135 | 0.312 |
| 136 | 136 | 0.896 |
| 137 | 137 | 0.564 |
| 138 | 138 | 0.419 |
| 139 | 139 | 0.175 |
| 14 | 14 | 0.348 |
| 140 | 140 | 0.485 |
| 141 | 141 | 0.783 |
| 142 | 142 | 0.649 |
| 143 | 143 | 0.0394 |
| 144 | 144 | 0.809 |
| 145 | 145 | 0.309 |
| 146 | 146 | 0.459 |
| 147 | 147 | 0.191 |
| 148 | 148 | 0.0503 |
| 149 | 149 | 0.279 |
| 15 | 15 | 0.0716 |
| 150 | 150 | 0.82 |
| 151 | 151 | 0.21 |
| 152 | 152 | 0.173 |
| 153 | 153 | 0.328 |
| 154 | 154 | 0.902 |
| 155 | 155 | 0.0406 |
| 156 | 156 | 0.119 |
| 157 | 157 | 0.562 |
| 158 | 158 | 0.0583 |
| 159 | 159 | 0.937 |
| 16 | 16 | 0.917 |
| 160 | 160 | 0.0456 |
| 161 | 161 | 0.742 |
| 162 | 162 | 0.949 |
| 163 | 163 | 0.718 |
| 164 | 164 | 0.387 |
| 165 | 165 | 0.724 |
| 166 | 166 | 0.036 |
| 167 | 167 | 0.192 |
| 168 | 168 | 0.207 |
| 169 | 169 | 0.425 |
| 17 | 17 | 0.461 |
| 18 | 18 | 0.553 |
| 19 | 19 | 0.602 |
| 2 | 2 | 0.624 |
| 20 | 20 | 0.864 |
| 21 | 21 | 0.899 |
| 22 | 22 | 0.662 |
| 23 | 23 | 0.756 |
| 24 | 24 | 0.199 |
| 25 | 25 | 0.0994 |
| 26 | 26 | 0.971 |
| 27 | 27 | 0.342 |
| 28 | 28 | 0.58 |
| 29 | 29 | 0.694 |
| 3 | 3 | 0.301 |
| 30 | 30 | 0.745 |
| 31 | 31 | 0.806 |
| 32 | 32 | 6.61488e-10 |
| 33 | 33 | 0.604 |
| 34 | 34 | 0.741 |
| 35 | 35 | 0.27 |
| 36 | 36 | 0.0137 |
| 37 | 37 | 0.404 |
| 38 | 38 | 0.225 |
| 39 | 39 | 0.919 |
| 4 | 4 | 0.135 |
| 40 | 40 | 0.0525 |
| 41 | 41 | 0.0442 |
| 42 | 42 | 0.146 |
| 43 | 43 | 0.234 |
| 44 | 44 | 0.792 |
| 45 | 45 | 0.48 |
| 46 | 46 | 0.323 |
| 47 | 47 | 0.155 |
| 48 | 48 | 0.402 |
| 49 | 49 | 0.0481 |
| 5 | 5 | 0.373 |
| 50 | 50 | 0.943 |
| 51 | 51 | 0.28 |
| 52 | 52 | 0.351 |
| 53 | 53 | 0.144 |
| 54 | 54 | 0.439 |
| 55 | 55 | 0.679 |
| 56 | 56 | 0.243 |
| 57 | 57 | 0.364 |
| 58 | 58 | 0.123 |
| 59 | 59 | 0.352 |
| 6 | 6 | 0.833 |
| 60 | 60 | 0.152 |
| 61 | 61 | 0.22 |
| 62 | 62 | 0.0609 |
| 63 | 63 | 0.488 |
| 64 | 64 | 0.182 |
| 65 | 65 | 0.255 |
| 66 | 66 | 0.244 |
| 67 | 67 | 0.814 |
| 68 | 68 | 0.584 |
| 69 | 69 | 0.589 |
| 7 | 7 | 0.0864 |
| 70 | 70 | 0.0575 |
| 71 | 71 | 0.398 |
| 72 | 72 | 0.355 |
| 73 | 73 | 0.201 |
| 74 | 74 | 0.422 |
| 75 | 75 | 0.287 |
| 76 | 76 | 0.701 |
| 77 | 77 | 0.717 |
| 78 | 78 | 0.0248 |
| 79 | 79 | 0.0714 |
| 8 | 8 | 0.204 |
| 80 | 80 | 0.187 |
| 81 | 81 | 0.431 |
| 82 | 82 | 0.0906 |
| 83 | 83 | 0.0537 |
| 84 | 84 | 0.558 |
| 85 | 85 | 0.391 |
| 86 | 86 | 0.784 |
| 87 | 87 | 0.838 |
| 88 | 88 | 0.522 |
| 89 | 89 | 0.652 |
| 9 | 9 | 0.9 |
| 90 | 90 | 0.0337 |
| 91 | 91 | 0.538 |
| 92 | 92 | 0.55 |
| 93 | 93 | 0.286 |
| 94 | 94 | 0.127 |
| 95 | 95 | 0.104 |
| 96 | 96 | 0.0426 |
| 97 | 97 | 0.258 |
| 98 | 98 | 0.00615 |
| 99 | 99 | 0.501 |
de novo motifs identified by HOMER in promoters active in this sample<b>Summary:</b>The result of HOMER in this sample is shown.<br><b>Analyst:</b>NA <br>
library id: CNhs12400
FANTOM5 (FF) ontology
Direct parent terms
is_a relathionship
EFO:0002091 biological replicate
FF:0000666 human Fibroblast - Aortic Adventitial, nuclear fraction sample
Ancestor terms (non development)<b>Summary:</b>Connected ontology terms with is_a, part_of or located_in relationship <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source data<br>data
CL: Cell type
0000000 (cell), 0000000 (cell)
0000003 (native cell)
0000548 (animal cell)
0002320 (connective tissue cell)
0002371 (somatic cell)
0000255 (eukaryotic cell)
0000057 (fibroblast)
1000306 (fibroblast of tunica adventitia of artery)
0002547 (fibroblast of the aortic adventitia)
UBERON: Anatomy
0000468 (multi-cellular organism)
0000947 (aorta)
0001637 (artery)
0000483 (epithelium)
0002384 (connective tissue)
0000479 (tissue)
0000055 (vessel)
0000064 (organ part)
0000062 (organ)
0004111 (anatomical conduit)
0004120 (mesoderm-derived structure)
0000061 (anatomical structure)
0000465 (material anatomical entity)
0003914 (epithelial tube)
0000025 (tube)
0004923 (organ component layer)
0000477 (anatomical cluster)
0000467 (anatomical system)
0000060 (anatomical wall)
0001062 (anatomical entity)
0000480 (anatomical group)
0000119 (cell layer)
0004573 (systemic artery)
0003509 (arterial blood vessel)
0007500 (epithelial tube open at both ends)
0001981 (blood vessel)
0002049 (vasculature)
0004797 (blood vessel layer)
0010317 (germ layer / neural crest derived structure)
0007798 (vascular system)
0000415 (artery wall)
0007240 (tunica adventitia of artery)
0005742 (adventitia)
0005734 (tunica adventitia of blood vessel)
0004664 (aorta tunica adventitia)
0004535 (cardiovascular system)
0004571 (systemic arterial system)
0010191 (aortic system)
0004572 (arterial system)
0004537 (blood vasculature)
0001009 (circulatory system)
0004663 (aorta wall)
FF: FANTOM5
0000102 (sample by type)
0000210 (human sample)
0000002 (in vivo cell sample)
0000101 (sample by species)
0000057 (fibroblast sample)
0000001 (sample)
0000408 (cellular fractionation sample)
0000350 (experimentally modified sample)
0000058 (human fibroblast of the aortic adventitia sample)
0000406 (nuclear fraction sample)
0000666 (human Fibroblast - Aortic Adventitial, nuclear fraction sample)
Ancestor terms (development)<b>Summary:</b>Connected ontology terms with develops_from, derives_from or preceded_by relationship <br><b>Analyst:</b> Hideya Kawaji <br><br>link to source data<br>data
CL:0000134 (mesenchymal cell)
