FF:14323-155E3: Difference between revisions
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{{f5samples | {{f5samples | ||
|ancestors_in_anatomy_facet=UBERON: | |DRA_sample_Accession=CAGE@SAMD00005302 | ||
|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL: | |accession_numbers=CAGE;DRX008037;DRR008909;DRZ000334;DRZ001719;DRZ011684;DRZ013069 | ||
|ancestors_in_anatomy_facet=UBERON:0000468,UBERON:0002097,UBERON:0002199,UBERON:0002384,UBERON:0000479,UBERON:0000062,UBERON:0000061,UBERON:0000465,UBERON:0000467,UBERON:0001062,UBERON:0000480,UBERON:0003102,UBERON:0002416 | |||
|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000548,CL:0002320,CL:0002371,CL:0000255,CL:0000057,CL:0002620 | |||
|ancestors_in_disease_facet= | |ancestors_in_disease_facet= | ||
|ancestors_in_ff_facet=FF:0000102,FF:0000210,FF:0000002,FF:0000101,FF:0000057,FF:0000250,FF:0000001,FF:0000408,FF:0000350,FF:0000406,FF:0000668 | |||
|comment= | |comment= | ||
|created_by= | |created_by= | ||
|creation_date= | |creation_date= | ||
|data_phase=2 | |||
|datafreeze_phase=2 | |||
|def= | |def= | ||
|expression_enrichment_score | |||
|fonse_cell_line= | |fonse_cell_line= | ||
|fonse_cell_line_closure= | |fonse_cell_line_closure= | ||
| Line 35: | Line 41: | ||
|fonse_treatment_closure= | |fonse_treatment_closure= | ||
|has_quality= | |has_quality= | ||
|hg19bam=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.fractionation.hCAGE/Fibroblast%2520-%2520skin%2520normal%252c%2520donor1%2520%2528nuclear%2520fraction%2529.CNhs12403.14323-155E3.hg19.nobarcode.bam | |||
|hg19ctss=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.fractionation.hCAGE/Fibroblast%2520-%2520skin%2520normal%252c%2520donor1%2520%2528nuclear%2520fraction%2529.CNhs12403.14323-155E3.hg19.ctss.bed.gz | |||
|hg19fasta=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.fractionation.hCAGE/Fibroblast%2520-%2520skin%2520normal%252c%2520donor1%2520%2528nuclear%2520fraction%2529.CNhs12403.14323-155E3.hg19.nobarcode.rdna.fa.gz | |||
|hg38bam=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.fractionation.hCAGE/Fibroblast%2520-%2520skin%2520normal%252c%2520donor1%2520%2528nuclear%2520fraction%2529.CNhs12403.14323-155E3.hg38.nobarcode.bam | |||
|hg38ctss=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.fractionation.hCAGE/Fibroblast%2520-%2520skin%2520normal%252c%2520donor1%2520%2528nuclear%2520fraction%2529.CNhs12403.14323-155E3.hg38.nobarcode.ctss.bed.gz | |||
|id=FF:14323-155E3 | |id=FF:14323-155E3 | ||
|is_a=EFO:0002091;;FF: | |is_a=EFO:0002091;;FF:0000668 | ||
|is_obsolete= | |||
|library_id=CNhs12403 | |||
|library_id_phase_based=2:CNhs12403 | |||
|microRNAs= | |||
|microRNAs_nn= | |||
|microRNAs_nonnovel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer/#/human#cage;sample;14323 | |||
|microRNAs_novel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer_novel/#/human#cage;sample;14323 | |||
|name=Fibroblast - skin normal, donor1 (nuclear fraction) | |name=Fibroblast - skin normal, donor1 (nuclear fraction) | ||
|namespace=FANTOM5 | |namespace=FANTOM5 | ||
| Line 42: | Line 60: | ||
|profile_cagescan=,,, | |profile_cagescan=,,, | ||
|profile_hcage=CNhs12403,LSID914,release011,COMPLETED | |profile_hcage=CNhs12403,LSID914,release011,COMPLETED | ||
|profile_rnaseq= | |profile_rnaseq= | ||
|profile_srnaseq=,,, | |profile_srnaseq=,,, | ||
|refex=http://refex.dbcls.jp/genelist.php?lang | |||
|repeat_enrich_byfamily=0,0,0,0,0,0,0,-0.160318030086386,0,-0.211316472589812,0.562199623136416,0,0,0,0,0,0,0,0,0,0,0,0,0,0.154293278435055,0,0.153808144391742,0,0,0,0.653130948206372,0,0,0.38801989328846,0,0,0,0,0,0,0,0,0,0,0,0,-0.00587485244689,0.359494493762296,0,0,0,0,0,0,0,0.10012974694299,0,0,0,0.359494493762296,0,0,0,-0.0969923612426051,0,0,0.0831495734205765,0.0995565284045724,0,0,0,0,0,0,0,0.0995565284045724,0,0.0995565284045724,0,0,0,0,0,0,0,0.0902466003168365,0,0,0,0,0,0,0.0902466003168365,0,0,-0.0584468268118252,0.185000372190814,0.0497782642022862,0.520976483067322,0.124344768055824,0.248689536111648,0.082457849395967,0.363770187230851,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0574345504692805,0,0,0,-0.0747927020851996,-0.213838368329177,0,0,0.180493200633673,0,0,0 | |||
|repeat_enrich_byname=0,0,0,0,0.082457849395967,0,0.248689536111648,0.180493200633673,0,0.180493200633673,0.180493200633673,0,0,0.520976483067322,0,0,0.0604374134979186,0.0902466003168365,-0.068254560196369,-0.0439586141188995,0.0497782642022862,0,0.160884918694252,0,0,0,0.214591368372661,0.180493200633673,0,0.180493200633673,0,0,0.510302196012766,0,-0.0504125515893149,0.0063225218346538,0.307616288783483,0,0,0.0497782642022862,0.747822214670288,0,0.0286577681283099,0.738544346910565,0,0,0,0,0.0713662510673805,0,-0.120879483793741,0.470726573680218,-0.221611588102807,0.00519184969234598,-0.04680465889238,0,0,0,-0.111250925232914,-0.0774036633530966,0,0,0.389490005105992,0.11047903763876,0,0,1.32290929542288,0,-0.415491115813227,0.11466496981769,0,0.0558722524769919,0,0,0,0,0.0497782642022862,0,0,0,0,0,0,0.122999733812237,0.158892371125531,0.221820388995767,0,0,0.0213428756707931,-0.146772295899658,0,0,-0.373286155956567,0.0379843122986222,0.020601256757614,-0.214734524773628,0,-0.202833198605341,-0.0872833007591887,-0.0151525725779746,-0.00644121620484461,0.516013304864358,0.215849939005792,0.0016417681701632,-0.0694704210197263,0.409226036505225,-0.0136529699434525,-0.215145737623553,0.0286776230306571,0.098062649056581,0.357339977222976,0,0,0,0.0911846283731799,0,-0.125659907535841,0.298958846250298,0.07619055946929,0.0427885122885733,-0.0898163404429767,0.073329792522202,0.307654597445899,0.0102457357456156,-0.0979419591342988,-0.0571569313167027,0.161102220667964,-0.0184664966316886,0.0995565284045724,0,-0.066718353739278,-0.264935624040001,-0.20999451462304,0,-0.384420933406408,0.0312122673272042,0.021089852794677,-0.382891913168912,-0.422099087649571,0,0,-0.131079183059749,0,0,0,0,0.0995565284045724,0.0869566744759842,0.12392301120533,0.0747607272279382,0,0.058970339851319,0.0694112805759849,-0.073437056446755,0,-0.00347896503344747,-0.102614233206233,0,-0.0439442684845875,0,-0.187256293876094,0.231302325016146,0.00742095832518741,0.189507543747956,-0.0584468268118252,-0.146814621376894,-0.0449654975148289,-0.10845754391269,0.353513020034106,-0.00180808612806636,0.432849650592034,0,0.290008302817208,-0.231800083809861,-0.0265799033239926,0.053947360036214,0,0.524058412792077,0,0.160355535727567,0,-0.0395004223021921,-0.0927357036615768,-0.439289374580686,-0.16937137907443,0,0.0833745158722028,0.177752361298927,0,-0.171813786457311,0.0124832950379875,0,-0.050810554930067,0.10919264147535,0.0665024845829766,0.262078682378447,0,0.0662482572209526,0,0,-0.0905303967351481,0.348181274634448,0.0995565284045724,-0.0461496659723607,-0.0882264311460744,-0.118335073390794,0.191645215348549,0,0,-0.0922535959890899,-0.0385169662700877,0.405831658555639,-0.357238527706382,0,-0.133902356154133,0.0542899472967273,0.0443959862863411,0.161371037743729,0,0,0.0711617701464728,0.0995565284045724,0.132886175433651,0.00358075422874113,0.0995565284045724,-0.109856432079701,0,0,0,0.0995565284045724,0.241163672773084,0,0,0,0,0,0,0.08199663050328,0.0464621208046574,0.131047637588052,0,-0.159310937728038,0,0,0,0,0.4858809678045,0.0165925931965038,0,0.248689536111648,1.14601805221366,0,-0.12301741567642,0,0,0,0,0.0918928862300084,0.24446148571694,0.180493200633673,0.0486304941360417,0,0.0497782642022862,0,0,0.162548546322437,0,0,0,0.124344768055824,-0.057730457053664,-0.00740611235169999,0,0,0,0.547047173828028,0,0,0,0.0995565284045724,0.106986542105877,0,0.180493200633673,0.309045076653412,0.0436711464314334,-0.0675324651747065,-0.0815818795468414,0.0281568298010632,0.020730421561148,0.158521746250537,0.126213439830669,0,0.0995565284045724,-0.161790603385315,0,0.0153945488983316,0.180444146468917,0,0.180493200633673,0.0288534882561692,0,0,0,0,0.0995565284045724,0.248689536111648,0.0933017763837274,0.153808144391742,0,0,0,0,0,0,0.0995565284045724,0,0,0,-0.169566001632304,-0.0922240566585104,0.180493200633673,0,0,0,0,0,0,0.341280641829264,-0.422901734909082,0,0,0,0,0,0.0995565284045724,0,0,0.352575635766577,0,0,0.0995565284045724,0,0,-0.0969923612426051,0,0,0,0,1.02484271786826,0,0,-0.277362132193514,0,0,0,0,0,0,0,0,0,0,0,0,0,-0.123319086035448,-0.211316472589812,0,0.0995565284045724,0,0,0,0,0,0.0846611955562054,0,0.0995565284045724,0,0,-0.113884373708977,0,0,0,0.075696815844517,0,-0.160318030086386,0,0,0,0.0497782642022862,0,0.0995565284045724,0,0,0,0,0,0,0,0,0,0,0,0.0497782642022862,0,0,0,0.478737210418617,0.0462619968414843,0.509204204585016,-0.0568589461625992,0,0,0.203187693632886,0,0,0,0,0,0,0.0589061762883095,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0902466003168365,0.0625220214236889,0,0,0,0,0.248689536111648,0,0,0.653130948206372,0,0,-0.0920328098005262,0,0,0,0,0.308044638670782,0,0.443234978540865,0.685951086845969,-0.0180112167576393,0,0,0.0995565284045724,-0.00460730828016882,0.359494493762296,0,0,0,0.032779140985671,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.154293278435055,0,0,0,0,0,0,0,0,0,0,0,0,0.153808144391742,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0157669009268697,0.1804932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| |||
|rna_box=155 | |rna_box=155 | ||
|rna_catalog_number=custom | |rna_catalog_number=custom | ||
| Line 54: | Line 75: | ||
|rna_rin= | |rna_rin= | ||
|rna_sample_type=total RNA | |rna_sample_type=total RNA | ||
|rna_tube_id= | |rna_tube_id=1.55E+05 | ||
|rna_weight_ug=23.3496 | |rna_weight_ug=23.3496 | ||
|sample_age=25 year old | |sample_age=25 year old | ||
|sample_category=fractionations and perturbations | |||
|sample_cell_catalog=N/A | |sample_cell_catalog=N/A | ||
|sample_cell_line= | |sample_cell_line= | ||
| Line 69: | Line 91: | ||
|sample_ethnicity=C | |sample_ethnicity=C | ||
|sample_experimental_condition=nuclear RNA | |sample_experimental_condition=nuclear RNA | ||
|sample_gostat=GO:0044464;cell part;0!GO:0005622;intracellular;0!GO:0044424;intracellular part;4.8309466224502e-224!GO:0043226;organelle;1.10631567062784e-175!GO:0043229;intracellular organelle;2.39000784129442e-175!GO:0043231;intracellular membrane-bound organelle;3.21390869288649e-170!GO:0043227;membrane-bound organelle;5.45429534730468e-170!GO:0005737;cytoplasm;2.73398608117942e-161!GO:0044422;organelle part;4.57278957460593e-111!GO:0044446;intracellular organelle part;1.25018494415518e-109!GO:0044444;cytoplasmic part;1.39085616746649e-106!GO:0044238;primary metabolic process;4.44907423696574e-88!GO:0043170;macromolecule metabolic process;2.14975204618745e-86!GO:0044237;cellular metabolic process;7.38809521120261e-85!GO:0005515;protein binding;7.71533212790018e-82!GO:0005634;nucleus;3.8698513950095e-77!GO:0032991;macromolecular complex;2.08307881304023e-73!GO:0044428;nuclear part;1.04875718706098e-65!GO:0043233;organelle lumen;1.99392782377062e-65!GO:0031974;membrane-enclosed lumen;1.99392782377062e-65!GO:0003723;RNA binding;1.34247512237921e-60!GO:0030529;ribonucleoprotein complex;1.4935870086021e-57!GO:0043283;biopolymer metabolic process;1.5245866543971e-50!GO:0016043;cellular component organization and biogenesis;1.46041887690467e-47!GO:0019538;protein metabolic process;1.44428324887639e-46!GO:0010467;gene expression;1.41084514235534e-44!GO:0006139;nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;2.69712455475517e-44!GO:0033036;macromolecule localization;5.25698852567367e-44!GO:0006396;RNA processing;1.96160141288258e-43!GO:0015031;protein transport;2.32656985544263e-43!GO:0005739;mitochondrion;5.60880562095518e-43!GO:0031981;nuclear lumen;5.75351990727168e-43!GO:0008104;protein localization;3.12990112230876e-40!GO:0044260;cellular macromolecule metabolic process;3.5638247764626e-40!GO:0045184;establishment of protein localization;1.96061084543961e-39!GO:0044267;cellular protein metabolic process;2.06651715913678e-39!GO:0043234;protein complex;1.36138572796242e-38!GO:0031090;organelle membrane;2.05805649739372e-37!GO:0046907;intracellular transport;1.50043521370375e-36!GO:0016071;mRNA metabolic process;3.2343774462065e-36!GO:0006412;translation;1.40272705480959e-34!GO:0005829;cytosol;5.98631872995132e-32!GO:0008380;RNA splicing;3.93154472109101e-31!GO:0006397;mRNA processing;4.77096460446802e-31!GO:0006886;intracellular protein transport;1.51261307674087e-30!GO:0005840;ribosome;1.56829307173624e-29!GO:0000166;nucleotide binding;3.0743625218926e-29!GO:0044429;mitochondrial part;3.38312400308571e-29!GO:0006996;organelle organization and biogenesis;3.38312400308571e-29!GO:0031967;organelle envelope;9.48149198611074e-29!GO:0031975;envelope;1.59398539633782e-28!GO:0003676;nucleic acid binding;5.70139832669678e-28!GO:0005654;nucleoplasm;8.52510697896533e-28!GO:0009058;biosynthetic process;3.48763380431836e-27!GO:0044249;cellular biosynthetic process;1.608293093682e-26!GO:0009059;macromolecule biosynthetic process;1.79815075593162e-26!GO:0065003;macromolecular complex assembly;4.31926359868394e-26!GO:0016070;RNA metabolic process;6.59042370354948e-26!GO:0003735;structural constituent of ribosome;1.74694605770367e-24!GO:0022607;cellular component assembly;1.93164277350255e-24!GO:0043228;non-membrane-bound organelle;2.83538174109059e-24!GO:0043232;intracellular non-membrane-bound organelle;2.83538174109059e-24!GO:0022613;ribonucleoprotein complex biogenesis and assembly;2.93992539116396e-23!GO:0033279;ribosomal subunit;1.35488076811944e-22!GO:0044451;nucleoplasm part;1.98164599342732e-22!GO:0051649;establishment of cellular localization;2.04586788368235e-22!GO:0051641;cellular localization;2.98254782615684e-22!GO:0005681;spliceosome;1.69110170089901e-21!GO:0006259;DNA metabolic process;2.98762567814735e-21!GO:0017076;purine nucleotide binding;1.42433854421783e-20!GO:0016462;pyrophosphatase activity;1.59014937693706e-20!GO:0016818;hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides;2.12667630840658e-20!GO:0017111;nucleoside-triphosphatase activity;2.80693700944092e-20!GO:0016817;hydrolase activity, acting on acid anhydrides;2.89163294974548e-20!GO:0032553;ribonucleotide binding;3.90897529501987e-20!GO:0032555;purine ribonucleotide binding;3.90897529501987e-20!GO:0048770;pigment granule;4.80152466557909e-19!GO:0042470;melanosome;4.80152466557909e-19!GO:0016874;ligase activity;6.19342599321544e-19!GO:0005524;ATP binding;9.37671072238766e-19!GO:0030554;adenyl nucleotide binding;9.53935056345354e-19!GO:0005830;cytosolic ribosome (sensu Eukaryota);1.30470268537105e-18!GO:0032559;adenyl ribonucleotide binding;1.6458238897187e-18!GO:0005740;mitochondrial envelope;7.56847433173637e-18!GO:0008134;transcription factor binding;1.09369642277321e-17!GO:0031966;mitochondrial membrane;3.04591332566245e-17!GO:0048193;Golgi vesicle transport;9.87148551766945e-17!GO:0006457;protein folding;1.45251312894501e-16!GO:0006119;oxidative phosphorylation;1.97147393808725e-16!GO:0019866;organelle inner membrane;1.99560528691159e-16!GO:0006512;ubiquitin cycle;5.34825489609699e-16!GO:0005783;endoplasmic reticulum;1.18971554280479e-15!GO:0043285;biopolymer catabolic process;1.70486587461737e-15!GO:0012505;endomembrane system;1.99964722992438e-15!GO:0051603;proteolysis involved in cellular protein catabolic process;2.32861762481542e-15!GO:0005743;mitochondrial inner membrane;2.91317119196591e-15!GO:0007049;cell cycle;3.39961576605438e-15!GO:0019941;modification-dependent protein catabolic process;4.9532257929853e-15!GO:0043632;modification-dependent macromolecule catabolic process;4.9532257929853e-15!GO:0006511;ubiquitin-dependent protein catabolic process;5.08132000729927e-15!GO:0044265;cellular macromolecule catabolic process;5.12380460259731e-15!GO:0044257;cellular protein catabolic process;5.32435149817573e-15!GO:0005794;Golgi apparatus;1.21168753823372e-14!GO:0005730;nucleolus;1.80851526323465e-14!GO:0044445;cytosolic part;1.80851526323465e-14!GO:0031980;mitochondrial lumen;2.0972519563601e-14!GO:0005759;mitochondrial matrix;2.0972519563601e-14!GO:0008135;translation factor activity, nucleic acid binding;2.60771485912314e-14!GO:0016192;vesicle-mediated transport;2.61305781426512e-14!GO:0030163;protein catabolic process;2.74889942925959e-14!GO:0000502;proteasome complex (sensu Eukaryota);2.82845309117743e-14!GO:0006605;protein targeting;2.85620412934887e-14!GO:0050794;regulation of cellular process;3.59887078068419e-14!GO:0009057;macromolecule catabolic process;3.74702055670284e-14!GO:0022618;protein-RNA complex assembly;7.91849123528883e-14!GO:0004386;helicase activity;1.50538445505091e-13!GO:0006974;response to DNA damage stimulus;9.86181964565988e-13!GO:0003712;transcription cofactor activity;1.27646668071121e-12!GO:0051186;cofactor metabolic process;1.39122550901985e-12!GO:0016887;ATPase activity;1.67700072697159e-12!GO:0043412;biopolymer modification;1.68632152194808e-12!GO:0044455;mitochondrial membrane part;2.22507701412597e-12!GO:0005793;ER-Golgi intermediate compartment;2.51467636018887e-12!GO:0044432;endoplasmic reticulum part;4.36268653607765e-12!GO:0051082;unfolded protein binding;4.74436828720705e-12!GO:0042623;ATPase activity, coupled;5.64321221526227e-12!GO:0044248;cellular catabolic process;5.70061286416609e-12!GO:0031965;nuclear membrane;8.01126090071954e-12!GO:0008026;ATP-dependent helicase activity;8.86963698462068e-12!GO:0015935;small ribosomal subunit;1.04991250687293e-11!GO:0015934;large ribosomal subunit;1.08621877405527e-11!GO:0016604;nuclear body;1.78312284512634e-11!GO:0005635;nuclear envelope;1.78312284512634e-11!GO:0000398;nuclear mRNA splicing, via spliceosome;1.91089900958002e-11!GO:0000375;RNA splicing, via transesterification reactions;1.91089900958002e-11!GO:0000377;RNA splicing, via transesterification reactions with bulged adenosine as nucleophile;1.91089900958002e-11!GO:0022402;cell cycle process;2.13740101338031e-11!GO:0006913;nucleocytoplasmic transport;4.83937937030827e-11!GO:0006464;protein modification process;5.50423877319526e-11!GO:0016655;oxidoreductase activity, acting on NADH or NADPH, quinone or similar compound as acceptor;5.50756508534206e-11!GO:0051169;nuclear transport;8.84217344311321e-11!GO:0005746;mitochondrial respiratory chain;8.90591170049071e-11!GO:0048523;negative regulation of cellular process;9.86631868450661e-11!GO:0003743;translation initiation factor activity;1.07747682191022e-10!GO:0044453;nuclear membrane part;2.13673393080206e-10!GO:0006461;protein complex assembly;2.50225517264365e-10!GO:0006281;DNA repair;2.59727483641421e-10!GO:0043687;post-translational protein modification;2.74988154070656e-10!GO:0016607;nuclear speck;4.11479951856979e-10!GO:0016876;ligase activity, forming aminoacyl-tRNA and related compounds;4.6511167852017e-10!GO:0004812;aminoacyl-tRNA ligase activity;4.6511167852017e-10!GO:0016875;ligase activity, forming carbon-oxygen bonds;4.6511167852017e-10!GO:0050789;regulation of biological process;4.98726202287407e-10!GO:0006732;coenzyme metabolic process;5.70551859087579e-10!GO:0008565;protein transporter activity;6.71482769729611e-10!GO:0050136;NADH dehydrogenase (quinone) activity;7.79286130727539e-10!GO:0003954;NADH dehydrogenase activity;7.79286130727539e-10!GO:0008137;NADH dehydrogenase (ubiquinone) activity;7.79286130727539e-10!GO:0043038;amino acid activation;9.01457510810565e-10!GO:0006418;tRNA aminoacylation for protein translation;9.01457510810565e-10!GO:0043039;tRNA aminoacylation;9.01457510810565e-10!GO:0005843;cytosolic small ribosomal subunit (sensu Eukaryota);9.01457510810565e-10!GO:0016651;oxidoreductase activity, acting on NADH or NADPH;1.03057342025774e-09!GO:0042254;ribosome biogenesis and assembly;1.31018634604487e-09!GO:0006366;transcription from RNA polymerase II promoter;1.32668105569286e-09!GO:0008639;small protein conjugating enzyme activity;1.33012455009091e-09!GO:0006399;tRNA metabolic process;1.41409851851194e-09!GO:0004842;ubiquitin-protein ligase activity;1.67805792694393e-09!GO:0000278;mitotic cell cycle;1.83586421568259e-09!GO:0030120;vesicle coat;2.61019714476017e-09!GO:0030662;coated vesicle membrane;2.61019714476017e-09!GO:0016879;ligase activity, forming carbon-nitrogen bonds;3.24869583804559e-09!GO:0006446;regulation of translational initiation;3.41332431302553e-09!GO:0005842;cytosolic large ribosomal subunit (sensu Eukaryota);4.31034249217437e-09!GO:0009719;response to endogenous stimulus;5.22373653040588e-09!GO:0006413;translational initiation;5.65259217417466e-09!GO:0019222;regulation of metabolic process;5.80826148947961e-09!GO:0051276;chromosome organization and biogenesis;6.19402493471672e-09!GO:0019787;small conjugating protein ligase activity;6.27339573435178e-09!GO:0048519;negative regulation of biological process;9.36620553366177e-09!GO:0048475;coated membrane;9.71958963633984e-09!GO:0030117;membrane coat;9.71958963633984e-09!GO:0005643;nuclear pore;1.00611635283224e-08!GO:0006888;ER to Golgi vesicle-mediated transport;1.17748936284961e-08!GO:0042775;organelle ATP synthesis coupled electron transport;1.17748936284961e-08!GO:0042773;ATP synthesis coupled electron transport;1.17748936284961e-08!GO:0030964;NADH dehydrogenase complex (quinone);1.44478041797741e-08!GO:0045271;respiratory chain complex I;1.44478041797741e-08!GO:0005747;mitochondrial respiratory chain complex I;1.44478041797741e-08!GO:0006325;establishment and/or maintenance of chromatin architecture;1.69400072452956e-08!GO:0009259;ribonucleotide metabolic process;1.93606212093759e-08!GO:0012501;programmed cell death;3.33187272365127e-08!GO:0006120;mitochondrial electron transport, NADH to ubiquinone;3.48144832165499e-08!GO:0042175;nuclear envelope-endoplasmic reticulum network;4.10259418288397e-08!GO:0006323;DNA packaging;4.58367938067208e-08!GO:0009055;electron carrier activity;4.84166349054968e-08!GO:0045333;cellular respiration;4.99141132437893e-08!GO:0006163;purine nucleotide metabolic process;5.16831787532403e-08!GO:0009060;aerobic respiration;5.21482841195293e-08!GO:0006403;RNA localization;5.23515515528156e-08!GO:0009150;purine ribonucleotide metabolic process;5.52532707530635e-08!GO:0051726;regulation of cell cycle;5.70084732814269e-08!GO:0009056;catabolic process;5.94351376922021e-08!GO:0050657;nucleic acid transport;5.94932727934848e-08!GO:0051236;establishment of RNA localization;5.94932727934848e-08!GO:0050658;RNA transport;5.94932727934848e-08!GO:0006915;apoptosis;6.79320861355125e-08!GO:0000074;regulation of progression through cell cycle;6.79742586283612e-08!GO:0016881;acid-amino acid ligase activity;7.63125467082799e-08!GO:0017038;protein import;8.51640730446979e-08!GO:0016568;chromatin modification;9.56558853976768e-08!GO:0008219;cell death;9.7645105664588e-08!GO:0016265;death;9.7645105664588e-08!GO:0016564;transcription repressor activity;1.01343170186512e-07!GO:0046961;hydrogen ion transporting ATPase activity, rotational mechanism;1.05066105865298e-07!GO:0043566;structure-specific DNA binding;1.24795564635953e-07!GO:0006164;purine nucleotide biosynthetic process;1.35653425956968e-07!GO:0009152;purine ribonucleotide biosynthetic process;1.38852308582165e-07!GO:0046933;hydrogen ion transporting ATP synthase activity, rotational mechanism;1.39565645932223e-07!GO:0005789;endoplasmic reticulum membrane;1.58307931834416e-07!GO:0009260;ribonucleotide biosynthetic process;1.68110313178806e-07!GO:0005768;endosome;1.84726827806856e-07!GO:0031324;negative regulation of cellular metabolic process;1.92270428268701e-07!GO:0046930;pore complex;2.11197980709721e-07!GO:0016787;hydrolase activity;2.41512878552604e-07!GO:0005788;endoplasmic reticulum lumen;2.78916733432048e-07!GO:0003714;transcription corepressor activity;3.38362255895649e-07!GO:0005798;Golgi-associated vesicle;3.61296955055796e-07!GO:0015986;ATP synthesis coupled proton transport;3.75342934770735e-07!GO:0015985;energy coupled proton transport, down electrochemical gradient;3.75342934770735e-07!GO:0006099;tricarboxylic acid cycle;3.75710489505615e-07!GO:0046356;acetyl-CoA catabolic process;3.75710489505615e-07!GO:0009199;ribonucleoside triphosphate metabolic process;3.80163734521273e-07!GO:0015630;microtubule cytoskeleton;3.88394387776994e-07!GO:0030036;actin cytoskeleton organization and biogenesis;4.38156676932685e-07!GO:0051187;cofactor catabolic process;4.92732026601952e-07!GO:0006260;DNA replication;5.68166504393083e-07!GO:0009109;coenzyme catabolic process;5.71799970861411e-07!GO:0005667;transcription factor complex;6.35319813558104e-07!GO:0065002;intracellular protein transport across a membrane;6.69405509041543e-07!GO:0005761;mitochondrial ribosome;7.04061077898091e-07!GO:0000313;organellar ribosome;7.04061077898091e-07!GO:0009205;purine ribonucleoside triphosphate metabolic process;7.34555152440641e-07!GO:0009144;purine nucleoside triphosphate metabolic process;7.34555152440641e-07!GO:0009141;nucleoside triphosphate metabolic process;7.55952667089831e-07!GO:0003724;RNA helicase activity;1.10201590503002e-06!GO:0055086;nucleobase, nucleoside and nucleotide metabolic process;1.20657064918574e-06!GO:0046034;ATP metabolic process;1.2401952009812e-06!GO:0031323;regulation of cellular metabolic process;1.40842866160913e-06!GO:0051028;mRNA transport;1.49825220092776e-06!GO:0006084;acetyl-CoA metabolic process;1.62618817620012e-06!GO:0009892;negative regulation of metabolic process;1.68555644422296e-06!GO:0000087;M phase of mitotic cell cycle;1.72446153416169e-06!GO:0051188;cofactor biosynthetic process;1.72446153416169e-06!GO:0000151;ubiquitin ligase complex;1.7819400147988e-06!GO:0009142;nucleoside triphosphate biosynthetic process;1.8404646261319e-06!GO:0009201;ribonucleoside triphosphate biosynthetic process;1.8404646261319e-06!GO:0003697;single-stranded DNA binding;1.8404646261319e-06!GO:0065007;biological regulation;1.99346862066922e-06!GO:0007067;mitosis;2.17898476539043e-06!GO:0051246;regulation of protein metabolic process;2.26584540305091e-06!GO:0051170;nuclear import;2.3970893070865e-06!GO:0019829;cation-transporting ATPase activity;2.82373782711555e-06!GO:0003924;GTPase activity;3.21291807953041e-06!GO:0006606;protein import into nucleus;3.23878199472945e-06!GO:0019899;enzyme binding;3.4486647233269e-06!GO:0009206;purine ribonucleoside triphosphate biosynthetic process;3.59691495642405e-06!GO:0009145;purine nucleoside triphosphate biosynthetic process;3.59691495642405e-06!GO:0006350;transcription;3.70874476635914e-06!GO:0005694;chromosome;3.8485302361703e-06!GO:0007010;cytoskeleton organization and biogenesis;3.9299259521608e-06!GO:0022403;cell cycle phase;4.39468583123547e-06!GO:0045934;negative regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;4.630079777996e-06!GO:0003713;transcription coactivator activity;4.65012906396379e-06!GO:0006754;ATP biosynthetic process;5.12737739194546e-06!GO:0006753;nucleoside phosphate metabolic process;5.12737739194546e-06!GO:0005813;centrosome;5.21468392173662e-06!GO:0051789;response to protein stimulus;5.57527371688668e-06!GO:0006986;response to unfolded protein;5.57527371688668e-06!GO:0031988;membrane-bound vesicle;6.0075928285287e-06!GO:0043123;positive regulation of I-kappaB kinase/NF-kappaB cascade;6.22680807390639e-06!GO:0016023;cytoplasmic membrane-bound vesicle;6.24260945070498e-06!GO:0030029;actin filament-based process;6.43006004643903e-06!GO:0031252;leading edge;6.9810939938819e-06!GO:0015931;nucleobase, nucleoside, nucleotide and nucleic acid transport;7.17194689130469e-06!GO:0044440;endosomal part;7.1969870158017e-06!GO:0010008;endosome membrane;7.1969870158017e-06!GO:0044431;Golgi apparatus part;7.25289701088238e-06!GO:0016591;DNA-directed RNA polymerase II, holoenzyme;7.72024204959939e-06!GO:0016563;transcription activator activity;8.00908587392074e-06!GO:0045786;negative regulation of progression through cell cycle;8.4014255651624e-06!GO:0016481;negative regulation of transcription;8.43939031082572e-06!GO:0005839;proteasome core complex (sensu Eukaryota);8.51460160725673e-06!GO:0006364;rRNA processing;8.69518590111256e-06!GO:0032446;protein modification by small protein conjugation;9.56103414457275e-06!GO:0016469;proton-transporting two-sector ATPase complex;1.06908048536915e-05!GO:0005815;microtubule organizing center;1.15397617964346e-05!GO:0009117;nucleotide metabolic process;1.34152595891934e-05!GO:0006793;phosphorus metabolic process;1.3624978624659e-05!GO:0006796;phosphate metabolic process;1.3624978624659e-05!GO:0006357;regulation of transcription from RNA polymerase II promoter;1.38079968789946e-05!GO:0051301;cell division;1.54616722683082e-05!GO:0015980;energy derivation by oxidation of organic compounds;1.54616722683082e-05!GO:0016310;phosphorylation;1.57709448258869e-05!GO:0016072;rRNA metabolic process;1.58710363768405e-05!GO:0016567;protein ubiquitination;1.74666248684728e-05!GO:0043122;regulation of I-kappaB kinase/NF-kappaB cascade;1.76148264423883e-05!GO:0008092;cytoskeletal protein binding;1.81152968643488e-05!GO:0010468;regulation of gene expression;1.82347243059694e-05!GO:0006752;group transfer coenzyme metabolic process;1.9433496903267e-05!GO:0043069;negative regulation of programmed cell death;2.18459199588757e-05!GO:0043067;regulation of programmed cell death;2.27350038140051e-05!GO:0031982;vesicle;2.30378498570565e-05!GO:0031410;cytoplasmic vesicle;2.61997821130867e-05!GO:0031202;RNA splicing factor activity, transesterification mechanism;2.79688124179384e-05!GO:0043623;cellular protein complex assembly;2.87163464301698e-05!GO:0042981;regulation of apoptosis;3.11352060776511e-05!GO:0019219;regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;3.19717688731324e-05!GO:0004298;threonine endopeptidase activity;3.27410522148022e-05!GO:0015078;hydrogen ion transmembrane transporter activity;3.27773741054616e-05!GO:0006613;cotranslational protein targeting to membrane;3.31181297582194e-05!GO:0009108;coenzyme biosynthetic process;3.48718418889184e-05!GO:0008361;regulation of cell size;3.76681152525207e-05!GO:0016740;transferase activity;4.15260882102287e-05!GO:0016772;transferase activity, transferring phosphorus-containing groups;4.20407001730272e-05!GO:0006916;anti-apoptosis;4.61459993482627e-05!GO:0016049;cell growth;4.73360954761843e-05!GO:0043066;negative regulation of apoptosis;4.85703751098996e-05!GO:0016491;oxidoreductase activity;5.07704595365011e-05!GO:0016363;nuclear matrix;5.45513591597051e-05!GO:0045259;proton-transporting ATP synthase complex;5.53661630517986e-05!GO:0005773;vacuole;5.56765352751396e-05!GO:0005770;late endosome;5.75983065770574e-05!GO:0030532;small nuclear ribonucleoprotein complex;5.94192420724336e-05!GO:0016853;isomerase activity;6.01134570648349e-05!GO:0008186;RNA-dependent ATPase activity;7.17343842221714e-05!GO:0003690;double-stranded DNA binding;7.63481188119233e-05!GO:0000245;spliceosome assembly;7.67875095448475e-05!GO:0030133;transport vesicle;7.88440776201077e-05!GO:0030663;COPI coated vesicle membrane;8.09408047759331e-05!GO:0030126;COPI vesicle coat;8.09408047759331e-05!GO:0007249;I-kappaB kinase/NF-kappaB cascade;9.05002344163996e-05!GO:0030867;rough endoplasmic reticulum membrane;0.000101354498543443!GO:0048471;perinuclear region of cytoplasm;0.000106763283146359!GO:0006891;intra-Golgi vesicle-mediated transport;0.00011857719533942!GO:0032774;RNA biosynthetic process;0.000122899452947021!GO:0033116;ER-Golgi intermediate compartment membrane;0.000130551817083396!GO:0006351;transcription, DNA-dependent;0.00014443541248765!GO:0003755;peptidyl-prolyl cis-trans isomerase activity;0.000147913233506202!GO:0044427;chromosomal part;0.00015487617059648!GO:0016197;endosome transport;0.000166930660840671!GO:0016859;cis-trans isomerase activity;0.000195858101605771!GO:0051168;nuclear export;0.000196736669321835!GO:0005905;coated pit;0.000201324842545008!GO:0000279;M phase;0.00021582370691994!GO:0004004;ATP-dependent RNA helicase activity;0.000228680106331129!GO:0030137;COPI-coated vesicle;0.000229676251265252!GO:0008047;enzyme activator activity;0.000255052958462575!GO:0005769;early endosome;0.000275698057174111!GO:0065004;protein-DNA complex assembly;0.000279295549341102!GO:0044262;cellular carbohydrate metabolic process;0.000291976317160044!GO:0001558;regulation of cell growth;0.000298504091404955!GO:0006333;chromatin assembly or disassembly;0.000307124345829951!GO:0003729;mRNA binding;0.000336487324854053!GO:0000139;Golgi membrane;0.000349795434767535!GO:0045449;regulation of transcription;0.000361325237101668!GO:0016779;nucleotidyltransferase activity;0.000367136849380759!GO:0006612;protein targeting to membrane;0.000369662707958924!GO:0051427;hormone receptor binding;0.000395855568295221!GO:0006091;generation of precursor metabolites and energy;0.00039953195567381!GO:0005791;rough endoplasmic reticulum;0.000411629297948644!GO:0007243;protein kinase cascade;0.000417550173841268!GO:0008270;zinc ion binding;0.000425012429513427!GO:0046914;transition metal ion binding;0.000441733598799394!GO:0015077;monovalent inorganic cation transmembrane transporter activity;0.000445496815207827!GO:0000323;lytic vacuole;0.000463823755192159!GO:0005764;lysosome;0.000463823755192159!GO:0006414;translational elongation;0.000480831199787543!GO:0030134;ER to Golgi transport vesicle;0.000516234273508639!GO:0031968;organelle outer membrane;0.000518613877442232!GO:0005048;signal sequence binding;0.000528393386655998!GO:0004576;oligosaccharyl transferase activity;0.000540898984430905!GO:0030658;transport vesicle membrane;0.000549481624997009!GO:0008250;oligosaccharyl transferase complex;0.000561296201968765!GO:0004177;aminopeptidase activity;0.000571478759220696!GO:0005885;Arp2/3 protein complex;0.000623333236527282!GO:0019867;outer membrane;0.00062948931284422!GO:0007005;mitochondrion organization and biogenesis;0.000645636237468983!GO:0004579;dolichyl-diphosphooligosaccharide-protein glycotransferase activity;0.000668984499279846!GO:0019843;rRNA binding;0.000743417555931889!GO:0035257;nuclear hormone receptor binding;0.000747525223195837!GO:0005819;spindle;0.000791664929147792!GO:0030127;COPII vesicle coat;0.000828058382631654!GO:0012507;ER to Golgi transport vesicle membrane;0.000828058382631654!GO:0005525;GTP binding;0.000828058382631654!GO:0045454;cell redox homeostasis;0.000836362889156928!GO:0000059;protein import into nucleus, docking;0.000888394606137382!GO:0033178;proton-transporting two-sector ATPase complex, catalytic domain;0.000890696036910013!GO:0000785;chromatin;0.000977935997563105!GO:0030530;heterogeneous nuclear ribonucleoprotein complex;0.00108232294381459!GO:0043021;ribonucleoprotein binding;0.00109488663125759!GO:0042625;ATPase activity, coupled to transmembrane movement of ions;0.00112725026370972!GO:0043284;biopolymer biosynthetic process;0.00113865656134113!GO:0050662;coenzyme binding;0.00114361678662783!GO:0051920;peroxiredoxin activity;0.00119646364346217!GO:0003678;DNA helicase activity;0.0013067288595101!GO:0004674;protein serine/threonine kinase activity;0.00134720068334103!GO:0045261;proton-transporting ATP synthase complex, catalytic core F(1);0.00159444330313311!GO:0048522;positive regulation of cellular process;0.00162654713162528!GO:0045892;negative regulation of transcription, DNA-dependent;0.00163652905980044!GO:0008022;protein C-terminus binding;0.00165733528177!GO:0030118;clathrin coat;0.00166357808485515!GO:0008654;phospholipid biosynthetic process;0.00167055702872751!GO:0006892;post-Golgi vesicle-mediated transport;0.00169599735081002!GO:0005096;GTPase activator activity;0.00176177445243449!GO:0044420;extracellular matrix part;0.00180804568421129!GO:0006402;mRNA catabolic process;0.00180939105069448!GO:0051329;interphase of mitotic cell cycle;0.00189879052403472!GO:0030660;Golgi-associated vesicle membrane;0.00190369737921132!GO:0006355;regulation of transcription, DNA-dependent;0.00191325326139356!GO:0003684;damaged DNA binding;0.00202147163876171!GO:0005581;collagen;0.00204394820061446!GO:0006289;nucleotide-excision repair;0.00208276619217908!GO:0007050;cell cycle arrest;0.00236830800614573!GO:0030132;clathrin coat of coated pit;0.00238903822880739!GO:0051252;regulation of RNA metabolic process;0.00252190329788023!GO:0015405;P-P-bond-hydrolysis-driven transmembrane transporter activity;0.00257236676925146!GO:0015399;primary active transmembrane transporter activity;0.00257236676925146!GO:0005741;mitochondrial outer membrane;0.00284896836110622!GO:0003746;translation elongation factor activity;0.00289927618571409!GO:0032561;guanyl ribonucleotide binding;0.00289927618571409!GO:0019001;guanyl nucleotide binding;0.00289927618571409!GO:0005753;mitochondrial proton-transporting ATP synthase complex;0.00291317047510389!GO:0030521;androgen receptor signaling pathway;0.00293791850740405!GO:0006261;DNA-dependent DNA replication;0.0029746910119053!GO:0016862;intramolecular oxidoreductase activity, interconverting keto- and enol-groups;0.00318133212452231!GO:0051325;interphase;0.00318202866055424!GO:0045045;secretory pathway;0.00321738064206939!GO:0005852;eukaryotic translation initiation factor 3 complex;0.00325663911583476!GO:0019752;carboxylic acid metabolic process;0.00343933545683615!GO:0005838;proteasome regulatory particle (sensu Eukaryota);0.00352922028696462!GO:0031124;mRNA 3'-end processing;0.00377976460008492!GO:0005874;microtubule;0.00381164275292882!GO:0048500;signal recognition particle;0.00383031616739221!GO:0007030;Golgi organization and biogenesis;0.00389872893140657!GO:0019798;procollagen-proline dioxygenase activity;0.00397031583625089!GO:0006082;organic acid metabolic process;0.0040307143503687!GO:0018196;peptidyl-asparagine modification;0.00407856741001311!GO:0018279;protein amino acid N-linked glycosylation via asparagine;0.00407856741001311!GO:0031625;ubiquitin protein ligase binding;0.00441246944694573!GO:0042802;identical protein binding;0.00441246944694573!GO:0031543;peptidyl-proline dioxygenase activity;0.00460768927771501!GO:0016706;oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors;0.0046846422432893!GO:0000049;tRNA binding;0.00468829557525692!GO:0051287;NAD binding;0.00468829557525692!GO:0015631;tubulin binding;0.00470341794108502!GO:0001726;ruffle;0.00471487033225977!GO:0009165;nucleotide biosynthetic process;0.00471487033225977!GO:0065009;regulation of a molecular function;0.00485473750896673!GO:0006890;retrograde vesicle-mediated transport, Golgi to ER;0.00490240725538788!GO:0003682;chromatin binding;0.00495888207119757!GO:0003779;actin binding;0.00495888207119757!GO:0005762;mitochondrial large ribosomal subunit;0.0050398195642576!GO:0000315;organellar large ribosomal subunit;0.0050398195642576!GO:0008139;nuclear localization sequence binding;0.00533794154894717!GO:0005583;fibrillar collagen;0.00550995731400178!GO:0017166;vinculin binding;0.00569445966499554!GO:0016765;transferase activity, transferring alkyl or aryl (other than methyl) groups;0.00594614833647287!GO:0007264;small GTPase mediated signal transduction;0.00606025416942621!GO:0030027;lamellipodium;0.00683604186810947!GO:0048037;cofactor binding;0.00683722432243733!GO:0016281;eukaryotic translation initiation factor 4F complex;0.00685877930036407!GO:0007265;Ras protein signal transduction;0.00705243199816789!GO:0003677;DNA binding;0.0071379580159399!GO:0046483;heterocycle metabolic process;0.00730818435713837!GO:0003711;transcription elongation regulator activity;0.00739614768143505!GO:0035258;steroid hormone receptor binding;0.00739614768143505!GO:0000122;negative regulation of transcription from RNA polymerase II promoter;0.00869619263955297!GO:0045935;positive regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;0.00869619263955297!GO:0006614;SRP-dependent cotranslational protein targeting to membrane;0.00887651060107999!GO:0045047;protein targeting to ER;0.00887651060107999!GO:0005099;Ras GTPase activator activity;0.00901881815241668!GO:0006520;amino acid metabolic process;0.00901881815241668!GO:0016679;oxidoreductase activity, acting on diphenols and related substances as donors;0.00901881815241668!GO:0016681;oxidoreductase activity, acting on diphenols and related substances as donors, cytochrome as acceptor;0.00901881815241668!GO:0008121;ubiquinol-cytochrome-c reductase activity;0.00901881815241668!GO:0031418;L-ascorbic acid binding;0.00951291325510212!GO:0045941;positive regulation of transcription;0.00975070929531458!GO:0045893;positive regulation of transcription, DNA-dependent;0.00981730768771233!GO:0005083;small GTPase regulator activity;0.00982622589456918!GO:0046489;phosphoinositide biosynthetic process;0.0102256621951853!GO:0006383;transcription from RNA polymerase III promoter;0.0104076646902466!GO:0051128;regulation of cellular component organization and biogenesis;0.0104874097369053!GO:0006354;RNA elongation;0.0109242577910007!GO:0005786;signal recognition particle, endoplasmic reticulum targeting;0.0109503638275864!GO:0050681;androgen receptor binding;0.0109539520550697!GO:0006401;RNA catabolic process;0.0110666784104727!GO:0040008;regulation of growth;0.0110728537975019!GO:0000118;histone deacetylase complex;0.0111114493476392!GO:0003756;protein disulfide isomerase activity;0.0111778228013602!GO:0016864;intramolecular oxidoreductase activity, transposing S-S bonds;0.0111778228013602!GO:0044452;nucleolar part;0.011241938250451!GO:0031901;early endosome membrane;0.0117394919067024!GO:0005595;collagen type XII;0.0117639537541435!GO:0051052;regulation of DNA metabolic process;0.0119304196956814!GO:0006310;DNA recombination;0.0120003928456951!GO:0005869;dynactin complex;0.0120244989027576!GO:0004003;ATP-dependent DNA helicase activity;0.0120998868958955!GO:0031123;RNA 3'-end processing;0.0120998868958955!GO:0042626;ATPase activity, coupled to transmembrane movement of substances;0.0120998868958955!GO:0016044;membrane organization and biogenesis;0.0122497737034999!GO:0030518;steroid hormone receptor signaling pathway;0.0123574072413501!GO:0051539;4 iron, 4 sulfur cluster binding;0.012377218765007!GO:0006635;fatty acid beta-oxidation;0.0124473851053681!GO:0003702;RNA polymerase II transcription factor activity;0.0125022378421166!GO:0008312;7S RNA binding;0.0125320397005052!GO:0043492;ATPase activity, coupled to movement of substances;0.0125518548766324!GO:0030041;actin filament polymerization;0.0127927907712934!GO:0006405;RNA export from nucleus;0.0131829209060703!GO:0008180;signalosome;0.0134408480643385!GO:0045792;negative regulation of cell size;0.0137894158661835!GO:0008154;actin polymerization and/or depolymerization;0.0137985854764582!GO:0030032;lamellipodium biogenesis;0.0137985854764582!GO:0030119;AP-type membrane coat adaptor complex;0.0138913721999806!GO:0016820;hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances;0.0145459945150843!GO:0030131;clathrin adaptor complex;0.014675048697433!GO:0005832;chaperonin-containing T-complex;0.0148791373802766!GO:0030659;cytoplasmic vesicle membrane;0.0149376632920132!GO:0006352;transcription initiation;0.0149712934562177!GO:0006607;NLS-bearing substrate import into nucleus;0.0150379031258512!GO:0001527;microfibril;0.0156099809487658!GO:0030308;negative regulation of cell growth;0.0156958560200758!GO:0032200;telomere organization and biogenesis;0.01583031205112!GO:0000723;telomere maintenance;0.01583031205112!GO:0008094;DNA-dependent ATPase activity;0.0162747569704563!GO:0006302;double-strand break repair;0.0165137656852279!GO:0016251;general RNA polymerase II transcription factor activity;0.0167122630563047!GO:0003899;DNA-directed RNA polymerase activity;0.0167122630563047!GO:0016627;oxidoreductase activity, acting on the CH-CH group of donors;0.0168099312708865!GO:0007034;vacuolar transport;0.0171482671647318!GO:0031461;cullin-RING ubiquitin ligase complex;0.0171904457906535!GO:0008234;cysteine-type peptidase activity;0.0172165995385224!GO:0031902;late endosome membrane;0.017250007195174!GO:0048468;cell development;0.0172852884557495!GO:0016301;kinase activity;0.0178194339313411!GO:0006378;mRNA polyadenylation;0.0180033743146935!GO:0030125;clathrin vesicle coat;0.0181817930627111!GO:0030665;clathrin coated vesicle membrane;0.0181817930627111!GO:0005862;muscle thin filament tropomyosin;0.0184986448608231!GO:0005938;cell cortex;0.0185832721704269!GO:0015992;proton transport;0.0185832721704269!GO:0006818;hydrogen transport;0.0189401137464254!GO:0030695;GTPase regulator activity;0.0196947503952996!GO:0005591;collagen type VIII;0.0198421439198195!GO:0005598;short-chain collagen;0.0198421439198195!GO:0031072;heat shock protein binding;0.0199220466658926!GO:0043087;regulation of GTPase activity;0.0199220466658926!GO:0031529;ruffle organization and biogenesis;0.0201371723258652!GO:0007052;mitotic spindle organization and biogenesis;0.0205201332780336!GO:0005684;U2-dependent spliceosome;0.0205201332780336!GO:0007041;lysosomal transport;0.0206141096858609!GO:0007051;spindle organization and biogenesis;0.0206598394639817!GO:0043488;regulation of mRNA stability;0.0211908096457579!GO:0043487;regulation of RNA stability;0.0211908096457579!GO:0046474;glycerophospholipid biosynthetic process;0.0213758045153426!GO:0005856;cytoskeleton;0.0218694354907322!GO:0000339;RNA cap binding;0.0219487673529688!GO:0008033;tRNA processing;0.0220448708921871!GO:0000922;spindle pole;0.0220750304394995!GO:0006007;glucose catabolic process;0.0224035555565852!GO:0000075;cell cycle checkpoint;0.0225248646104575!GO:0006984;ER-nuclear signaling pathway;0.0227992725706906!GO:0044433;cytoplasmic vesicle part;0.0229842650378497!GO:0048487;beta-tubulin binding;0.0237826115582914!GO:0007160;cell-matrix adhesion;0.023926098196611!GO:0000781;chromosome, telomeric region;0.0243338007533926!GO:0030865;cortical cytoskeleton organization and biogenesis;0.0246199116795097!GO:0009967;positive regulation of signal transduction;0.025159954825618!GO:0000096;sulfur amino acid metabolic process;0.0256543519333618!GO:0032940;secretion by cell;0.0260329851616589!GO:0031497;chromatin assembly;0.0261390996047017!GO:0030833;regulation of actin filament polymerization;0.0262920546643086!GO:0016408;C-acyltransferase activity;0.0263616152007975!GO:0043022;ribosome binding;0.0265891284312859!GO:0009112;nucleobase metabolic process;0.027388503218632!GO:0008652;amino acid biosynthetic process;0.0274357557193422!GO:0006334;nucleosome assembly;0.0277453235195699!GO:0043433;negative regulation of transcription factor activity;0.0279133557295033!GO:0035035;histone acetyltransferase binding;0.0281290148587428!GO:0051045;negative regulation of membrane protein ectodomain proteolysis;0.0281641749422603!GO:0051043;regulation of membrane protein ectodomain proteolysis;0.0281641749422603!GO:0051493;regulation of cytoskeleton organization and biogenesis;0.0281641749422603!GO:0033043;regulation of organelle organization and biogenesis;0.0281641749422603!GO:0012506;vesicle membrane;0.0289370540934801!GO:0031589;cell-substrate adhesion;0.0291448069026414!GO:0000209;protein polyubiquitination;0.029235664747624!GO:0045926;negative regulation of growth;0.029235664747624!GO:0007040;lysosome organization and biogenesis;0.0298700596570472!GO:0022408;negative regulation of cell-cell adhesion;0.0312640081020748!GO:0045263;proton-transporting ATP synthase complex, coupling factor F(o);0.0312640081020748!GO:0033177;proton-transporting two-sector ATPase complex, proton-transporting domain;0.0312640081020748!GO:0006740;NADPH regeneration;0.0313458694803718!GO:0006098;pentose-phosphate shunt;0.0313458694803718!GO:0008064;regulation of actin polymerization and/or depolymerization;0.0328820545096333!GO:0033673;negative regulation of kinase activity;0.0338201028749662!GO:0006469;negative regulation of protein kinase activity;0.0338201028749662!GO:0004656;procollagen-proline 4-dioxygenase activity;0.0347507842641981!GO:0031545;peptidyl-proline 4-dioxygenase activity;0.0347507842641981!GO:0051348;negative regulation of transferase activity;0.0348872544513389!GO:0051271;negative regulation of cell motility;0.0349531258562603!GO:0000314;organellar small ribosomal subunit;0.0349541460792414!GO:0005763;mitochondrial small ribosomal subunit;0.0349541460792414!GO:0043495;protein anchor;0.0350311253951437!GO:0007004;telomere maintenance via telomerase;0.0350460866871558!GO:0006497;protein amino acid lipidation;0.0350659404582452!GO:0005801;cis-Golgi network;0.0351847131011541!GO:0004527;exonuclease activity;0.0355053294403949!GO:0003988;acetyl-CoA C-acyltransferase activity;0.0363484057437731!GO:0016569;covalent chromatin modification;0.0367667759185993!GO:0009225;nucleotide-sugar metabolic process;0.0369644761978744!GO:0000287;magnesium ion binding;0.0376160064907984!GO:0019318;hexose metabolic process;0.0377686026587254!GO:0006376;mRNA splice site selection;0.0378323820501117!GO:0000389;nuclear mRNA 3'-splice site recognition;0.0378323820501117!GO:0005586;collagen type III;0.0378487037391913!GO:0004287;prolyl oligopeptidase activity;0.0379522364590711!GO:0008475;procollagen-lysine 5-dioxygenase activity;0.0379522364590711!GO:0008168;methyltransferase activity;0.0380662911154616!GO:0048518;positive regulation of biological process;0.0381141601434664!GO:0016741;transferase activity, transferring one-carbon groups;0.0382513778140891!GO:0001872;zymosan binding;0.0385980883022303!GO:0001878;response to yeast;0.0385980883022303!GO:0016579;protein deubiquitination;0.0388224121078758!GO:0005996;monosaccharide metabolic process;0.039106249982612!GO:0002763;positive regulation of myeloid leukocyte differentiation;0.0393391576656283!GO:0051087;chaperone binding;0.0393391576656283!GO:0005774;vacuolar membrane;0.0399994588810261!GO:0006611;protein export from nucleus;0.0400794449447097!GO:0042168;heme metabolic process;0.0400794449447097!GO:0016903;oxidoreductase activity, acting on the aldehyde or oxo group of donors;0.0404087324200803!GO:0030522;intracellular receptor-mediated signaling pathway;0.0407245692595672!GO:0001952;regulation of cell-matrix adhesion;0.0407245692595672!GO:0005062;hematopoietin/interferon-class (D200-domain) cytokine receptor signal transducer activity;0.0409044381558737!GO:0001666;response to hypoxia;0.0421015597911327!GO:0016570;histone modification;0.0427114408221797!GO:0005100;Rho GTPase activator activity;0.0428829376386284!GO:0006100;tricarboxylic acid cycle intermediate metabolic process;0.0430296203630202!GO:0051540;metal cluster binding;0.0437163683574116!GO:0051536;iron-sulfur cluster binding;0.0437163683574116!GO:0050790;regulation of catalytic activity;0.0438787352377525!GO:0006509;membrane protein ectodomain proteolysis;0.0445067538594589!GO:0033619;membrane protein proteolysis;0.0445067538594589!GO:0006778;porphyrin metabolic process;0.0446099518477979!GO:0033013;tetrapyrrole metabolic process;0.0446099518477979!GO:0000082;G1/S transition of mitotic cell cycle;0.0452950539890268!GO:0006338;chromatin remodeling;0.0474336275524319!GO:0004437;inositol or phosphatidylinositol phosphatase activity;0.0476741523784867!GO:0006368;RNA elongation from RNA polymerase II promoter;0.048083646074912!GO:0007033;vacuole organization and biogenesis;0.0486956509456381!GO:0047485;protein N-terminus binding;0.0486956509456381!GO:0006379;mRNA cleavage;0.0487527772614905 | |||
|sample_id=14323 | |sample_id=14323 | ||
|sample_note= | |sample_note= | ||
| Line 76: | Line 99: | ||
|sample_tissue=skin | |sample_tissue=skin | ||
|top_motifs=ALX4:2.26356298456;NKX3-1:2.21007183549;HIF1A:2.11385417952;NR3C1:2.08524813019;XBP1:1.78914129541;EN1,2:1.73421006159;SRF:1.73061653973;GZF1:1.68905069395;ESR1:1.65681213173;RXRA_VDR{dimer}:1.64686137249;NKX3-2:1.58118801103;TEAD1:1.57990303629;FOXL1:1.51538294664;HBP1_HMGB_SSRP1_UBTF:1.46596241031;ZNF238:1.44512642455;UFEwm:1.43164407323;GATA4:1.42354236806;PRDM1:1.39175439524;HMGA1,2:1.35244756761;HMX1:1.34921360841;MYBL2:1.34554130182;KLF4:1.32933089054;GTF2A1,2:1.30455208687;HSF1,2:1.29353908286;RXR{A,B,G}:1.27607028207;SOX17:1.24973650547;MZF1:1.21258628505;AHR_ARNT_ARNT2:1.13843627357;EBF1:1.07958316697;HOX{A5,B5}:1.06877827186;MAFB:1.03099689116;GFI1B:1.01322719212;ATF6:0.991610458142;MTE{core}:0.99150673975;AIRE:0.978265208792;EVI1:0.975437492384;TOPORS:0.972186287259;NANOG{mouse}:0.967892898817;TP53:0.951846857062;GLI1..3:0.9463881537;GTF2I:0.944420205745;EP300:0.941014812529;MAZ:0.939821449803;TEF:0.938382198837;TAL1_TCF{3,4,12}:0.882659664458;PAX8:0.83964738975;HAND1,2:0.83233313818;SPZ1:0.828057993928;ZNF384:0.825767254333;NFATC1..3:0.785512196209;NKX2-1,4:0.756289222682;TLX1..3_NFIC{dimer}:0.75371235562;RREB1:0.697030157884;ZIC1..3:0.695839078403;NFIX:0.681230938528;NFE2L1:0.669642395213;HLF:0.663396644519;GFI1:0.644444691674;IKZF1:0.637586477164;GCM1,2:0.62928609779;STAT1,3:0.603922249166;ARID5B:0.594456765502;TFAP2{A,C}:0.571795366922;RFX1:0.549483119634;PPARG:0.535356327007;ELK1,4_GABP{A,B1}:0.534981630403;POU3F1..4:0.495291082007;TLX2:0.476703548684;NR1H4:0.470292184256;TBX4,5:0.452006788342;PATZ1:0.432485374914;MEF2{A,B,C,D}:0.413869222303;NFE2L2:0.408645180091;TFAP4:0.40343214868;SMAD1..7,9:0.402906929446;SP1:0.402426697154;ZNF148:0.399076886648;HES1:0.388321057636;PDX1:0.370154615053;FOXD3:0.368464348524;POU1F1:0.365103193051;TFCP2:0.325145999394;ZBTB6:0.320982714858;ATF4:0.301414631143;BPTF:0.285094427151;BACH2:0.283809006818;PRRX1,2:0.279377514198;FOXN1:0.278769580562;NFE2:0.235776529708;CEBPA,B_DDIT3:0.232185356457;NKX2-2,8:0.225958102667;ZNF143:0.220012562364;YY1:0.217703918821;MED-1{core}:0.208738754424;NRF1:0.188703337504;CREB1:0.182655663607;TFDP1:0.171454169469;FOXO1,3,4:0.168842066348;TBP:0.163126852772;HOX{A4,D4}:0.15615012001;XCPE1{core}:0.152290068876;CDC5L:0.146406391441;FOS_FOS{B,L1}_JUN{B,D}:0.141875041895;NR6A1:0.114228276032;PAX2:0.0964528090268;IRF1,2:0.0903120999186;PAX3,7:0.0882677120454;FOX{I1,J2}:0.0853251796542;MYFfamily:0.0577598323931;FOXP1:0.0549887378471;POU5F1:0.0547695530526;TFAP2B:0.0455424084342;ATF5_CREB3:0.0373250625667;EGR1..3:-0.0145263370342;NHLH1,2:-0.0168866048851;FOSL2:-0.0229011528817;ELF1,2,4:-0.0234574105545;HOX{A6,A7,B6,B7}:-0.0252392169528;ZFP161:-0.0269000790492;RUNX1..3:-0.0342404406179;MYB:-0.0442559287272;SOX5:-0.0556583686567;NKX2-3_NKX2-5:-0.065357343456;HIC1:-0.0662745555861;DMAP1_NCOR{1,2}_SMARC:-0.0743824111874;ZBTB16:-0.105497654958;PAX5:-0.106985185573;FOX{D1,D2}:-0.165088909806;ATF2:-0.170161349937;STAT5{A,B}:-0.171193690459;CRX:-0.172400373087;STAT2,4,6:-0.185084828527;RBPJ:-0.1871488568;SOX2:-0.191781294862;DBP:-0.202749547152;ZNF423:-0.214565884632;LEF1_TCF7_TCF7L1,2:-0.219635181035;FOXA2:-0.23344586566;CDX1,2,4:-0.236374171523;ONECUT1,2:-0.252857285017;HNF1A:-0.270863996401;SREBF1,2:-0.278670628326;T:-0.295642612075;SPI1:-0.309999730798;ETS1,2:-0.329812104847;AR:-0.368305844938;E2F1..5:-0.377085652942;bHLH_family:-0.384149446202;PAX4:-0.400804561161;HNF4A_NR2F1,2:-0.401143165021;TGIF1:-0.406514759534;NFKB1_REL_RELA:-0.416600838245;POU6F1:-0.422799555282;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:-0.445065806144;JUN:-0.445721835941;RFX2..5_RFXANK_RFXAP:-0.455922960362;NFY{A,B,C}:-0.507575466765;ADNP_IRX_SIX_ZHX:-0.526759168976;MTF1:-0.534523742978;PAX1,9:-0.538071899797;PITX1..3:-0.542405441767;IRF7:-0.550645730106;REST:-0.561352200627;CUX2:-0.580127235103;LHX3,4:-0.595841564151;FOXM1:-0.61005716202;POU2F1..3:-0.616329034125;SPIB:-0.652895096305;PAX6:-0.734142724944;RXR{A,B,G}_{NR1H2,PPAR}dimers:-0.744456339465;ALX1:-0.791244864968;ZEB1:-0.850216085956;OCT4_SOX2{dimer}:-0.857425204394;HOXA9_MEIS1:-0.880087620114;SOX{8,9,10}:-0.912275295553;RORA:-0.921498382519;FOXP3:-0.931245785525;SNAI1..3:-0.93210696813;NFIL3:-0.955248535599;FOX{F1,F2,J1}:-0.9814995627;MYOD1:-0.992061106423;GATA6:-1.04602356;NANOG:-1.12349336653;IKZF2:-1.13428658984;NKX6-1,2:-1.1471971591;FOXQ1:-1.16361821229;ESRRA:-1.20368108501;LMO2:-1.20807526543;BREu{core}:-1.27933713864;NR5A1,2:-1.2808048738;PBX1:-1.56827192497;VSX1,2:-2.28761262566 | |top_motifs=ALX4:2.26356298456;NKX3-1:2.21007183549;HIF1A:2.11385417952;NR3C1:2.08524813019;XBP1:1.78914129541;EN1,2:1.73421006159;SRF:1.73061653973;GZF1:1.68905069395;ESR1:1.65681213173;RXRA_VDR{dimer}:1.64686137249;NKX3-2:1.58118801103;TEAD1:1.57990303629;FOXL1:1.51538294664;HBP1_HMGB_SSRP1_UBTF:1.46596241031;ZNF238:1.44512642455;UFEwm:1.43164407323;GATA4:1.42354236806;PRDM1:1.39175439524;HMGA1,2:1.35244756761;HMX1:1.34921360841;MYBL2:1.34554130182;KLF4:1.32933089054;GTF2A1,2:1.30455208687;HSF1,2:1.29353908286;RXR{A,B,G}:1.27607028207;SOX17:1.24973650547;MZF1:1.21258628505;AHR_ARNT_ARNT2:1.13843627357;EBF1:1.07958316697;HOX{A5,B5}:1.06877827186;MAFB:1.03099689116;GFI1B:1.01322719212;ATF6:0.991610458142;MTE{core}:0.99150673975;AIRE:0.978265208792;EVI1:0.975437492384;TOPORS:0.972186287259;NANOG{mouse}:0.967892898817;TP53:0.951846857062;GLI1..3:0.9463881537;GTF2I:0.944420205745;EP300:0.941014812529;MAZ:0.939821449803;TEF:0.938382198837;TAL1_TCF{3,4,12}:0.882659664458;PAX8:0.83964738975;HAND1,2:0.83233313818;SPZ1:0.828057993928;ZNF384:0.825767254333;NFATC1..3:0.785512196209;NKX2-1,4:0.756289222682;TLX1..3_NFIC{dimer}:0.75371235562;RREB1:0.697030157884;ZIC1..3:0.695839078403;NFIX:0.681230938528;NFE2L1:0.669642395213;HLF:0.663396644519;GFI1:0.644444691674;IKZF1:0.637586477164;GCM1,2:0.62928609779;STAT1,3:0.603922249166;ARID5B:0.594456765502;TFAP2{A,C}:0.571795366922;RFX1:0.549483119634;PPARG:0.535356327007;ELK1,4_GABP{A,B1}:0.534981630403;POU3F1..4:0.495291082007;TLX2:0.476703548684;NR1H4:0.470292184256;TBX4,5:0.452006788342;PATZ1:0.432485374914;MEF2{A,B,C,D}:0.413869222303;NFE2L2:0.408645180091;TFAP4:0.40343214868;SMAD1..7,9:0.402906929446;SP1:0.402426697154;ZNF148:0.399076886648;HES1:0.388321057636;PDX1:0.370154615053;FOXD3:0.368464348524;POU1F1:0.365103193051;TFCP2:0.325145999394;ZBTB6:0.320982714858;ATF4:0.301414631143;BPTF:0.285094427151;BACH2:0.283809006818;PRRX1,2:0.279377514198;FOXN1:0.278769580562;NFE2:0.235776529708;CEBPA,B_DDIT3:0.232185356457;NKX2-2,8:0.225958102667;ZNF143:0.220012562364;YY1:0.217703918821;MED-1{core}:0.208738754424;NRF1:0.188703337504;CREB1:0.182655663607;TFDP1:0.171454169469;FOXO1,3,4:0.168842066348;TBP:0.163126852772;HOX{A4,D4}:0.15615012001;XCPE1{core}:0.152290068876;CDC5L:0.146406391441;FOS_FOS{B,L1}_JUN{B,D}:0.141875041895;NR6A1:0.114228276032;PAX2:0.0964528090268;IRF1,2:0.0903120999186;PAX3,7:0.0882677120454;FOX{I1,J2}:0.0853251796542;MYFfamily:0.0577598323931;FOXP1:0.0549887378471;POU5F1:0.0547695530526;TFAP2B:0.0455424084342;ATF5_CREB3:0.0373250625667;EGR1..3:-0.0145263370342;NHLH1,2:-0.0168866048851;FOSL2:-0.0229011528817;ELF1,2,4:-0.0234574105545;HOX{A6,A7,B6,B7}:-0.0252392169528;ZFP161:-0.0269000790492;RUNX1..3:-0.0342404406179;MYB:-0.0442559287272;SOX5:-0.0556583686567;NKX2-3_NKX2-5:-0.065357343456;HIC1:-0.0662745555861;DMAP1_NCOR{1,2}_SMARC:-0.0743824111874;ZBTB16:-0.105497654958;PAX5:-0.106985185573;FOX{D1,D2}:-0.165088909806;ATF2:-0.170161349937;STAT5{A,B}:-0.171193690459;CRX:-0.172400373087;STAT2,4,6:-0.185084828527;RBPJ:-0.1871488568;SOX2:-0.191781294862;DBP:-0.202749547152;ZNF423:-0.214565884632;LEF1_TCF7_TCF7L1,2:-0.219635181035;FOXA2:-0.23344586566;CDX1,2,4:-0.236374171523;ONECUT1,2:-0.252857285017;HNF1A:-0.270863996401;SREBF1,2:-0.278670628326;T:-0.295642612075;SPI1:-0.309999730798;ETS1,2:-0.329812104847;AR:-0.368305844938;E2F1..5:-0.377085652942;bHLH_family:-0.384149446202;PAX4:-0.400804561161;HNF4A_NR2F1,2:-0.401143165021;TGIF1:-0.406514759534;NFKB1_REL_RELA:-0.416600838245;POU6F1:-0.422799555282;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:-0.445065806144;JUN:-0.445721835941;RFX2..5_RFXANK_RFXAP:-0.455922960362;NFY{A,B,C}:-0.507575466765;ADNP_IRX_SIX_ZHX:-0.526759168976;MTF1:-0.534523742978;PAX1,9:-0.538071899797;PITX1..3:-0.542405441767;IRF7:-0.550645730106;REST:-0.561352200627;CUX2:-0.580127235103;LHX3,4:-0.595841564151;FOXM1:-0.61005716202;POU2F1..3:-0.616329034125;SPIB:-0.652895096305;PAX6:-0.734142724944;RXR{A,B,G}_{NR1H2,PPAR}dimers:-0.744456339465;ALX1:-0.791244864968;ZEB1:-0.850216085956;OCT4_SOX2{dimer}:-0.857425204394;HOXA9_MEIS1:-0.880087620114;SOX{8,9,10}:-0.912275295553;RORA:-0.921498382519;FOXP3:-0.931245785525;SNAI1..3:-0.93210696813;NFIL3:-0.955248535599;FOX{F1,F2,J1}:-0.9814995627;MYOD1:-0.992061106423;GATA6:-1.04602356;NANOG:-1.12349336653;IKZF2:-1.13428658984;NKX6-1,2:-1.1471971591;FOXQ1:-1.16361821229;ESRRA:-1.20368108501;LMO2:-1.20807526543;BREu{core}:-1.27933713864;NR5A1,2:-1.2808048738;PBX1:-1.56827192497;VSX1,2:-2.28761262566 | ||
|xref= | |||
|zenbu_report=https://fantom.gsc.riken.jp/zenbu/reports/#miRNA_expression_atlas_human;search_select_hide=table111:FF:14323-155E3;search_select_hide=table117:FF:14323-155E3 | |||
}} | }} | ||
Latest revision as of 19:06, 4 June 2020
| Name: | Fibroblast - skin normal, donor1 (nuclear fraction) |
|---|---|
| Species: | Human (Homo sapiens) |
| Library ID: | CNhs12403 |
| Sample type: | fractionations and perturbations |
| Genomic View: | UCSC |
| RefEX: | Specific genes |
| CAGEd-oPOSSUM: | link |
| ZENBU report : | link |
| Additional information | ||||||||||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
Sample information
RNA information
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| CAGE Accession numbers | ||||||||||||||||||||||||||||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
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| Download raw sequence, BAM & CTSS | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
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Relative expression to median (log10)
Transcription factors with enriched expression in this sampleRanked list of transcription factor promoter expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.
Co-expression clusters with enriched expression in this sampleRanked list of co-expression cluster expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed. <br>Analyst:NA <br><br>link to dataset.<br>data
Repeat families with enriched expression in this sample<b>Summary:</b>Ranked list of repeat family expression in this sample relative tothe median expression in the FANTOM5 collection is shown. Value is log10transformed.<br><b>Analyst:</b>NA<br><br>link to dataset.<br>data
TFBS(DNA)motifs over-represented in proximal region of promoters active in this sample
JASPAR motifs<b>Summary:</b>Association of JASPAR motif to the promoter expression in thissample. Pearson's correlation between the number of TFBSs estimated byusing the position-weight matrix for each promoter and its expression isexpressed as Z-score by taking the ones based on random position-weightmatrix, and the tail probability of the normal distribution correspondingto the Z-score is taken as the resulting P-value. Lower P-value indicatesmore (non-random) association of the motif to promoter expression<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data
library id: CNhs12403
FANTOM5 phase1 novel unique motifs<b>Summary:</b>Association of the 169 novel and unique motifs discovered in FANTOM5 phase1 in this sample. Among the de-novo motifs discovered by DMF, HOMER,ChIPMunk, and ScanAll, only novel motifs are selected after comparison with known motif sets, and their clustering based on MACRO-APE resulted in169 novel and unique motifs. Their association to the promoter expression is evaluated in the same way to the JASPAR motif above<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data
library id: CNhs12403
| Novel motif | Logo | P-value |
|---|---|---|
| 1 | 1 | 0.082 |
| 10 | 10 | 0.446 |
| 100 | 100 | 0.376 |
| 101 | 101 | 0.778 |
| 102 | 102 | 0.0295 |
| 103 | 103 | 0.167 |
| 104 | 104 | 0.385 |
| 105 | 105 | 0.731 |
| 106 | 106 | 0.0379 |
| 107 | 107 | 0.753 |
| 108 | 108 | 0.868 |
| 109 | 109 | 0.0982 |
| 11 | 11 | 0.191 |
| 110 | 110 | 0.854 |
| 111 | 111 | 0.0895 |
| 112 | 112 | 0.667 |
| 113 | 113 | 0.0153 |
| 114 | 114 | 0.685 |
| 115 | 115 | 0.861 |
| 116 | 116 | 0.88 |
| 117 | 117 | 0.511 |
| 118 | 118 | 0.687 |
| 119 | 119 | 0.546 |
| 12 | 12 | 0.869 |
| 120 | 120 | 0.498 |
| 121 | 121 | 0.803 |
| 122 | 122 | 0.0479 |
| 123 | 123 | 0.00901 |
| 124 | 124 | 0.0943 |
| 125 | 125 | 0.706 |
| 126 | 126 | 0.179 |
| 127 | 127 | 0.763 |
| 128 | 128 | 0.131 |
| 129 | 129 | 0.328 |
| 13 | 13 | 0.412 |
| 130 | 130 | 0.664 |
| 131 | 131 | 0.687 |
| 132 | 132 | 0.627 |
| 133 | 133 | 0.616 |
| 134 | 134 | 0.828 |
| 135 | 135 | 0.538 |
| 136 | 136 | 0.177 |
| 137 | 137 | 0.45 |
| 138 | 138 | 0.391 |
| 139 | 139 | 0.351 |
| 14 | 14 | 0.46 |
| 140 | 140 | 0.923 |
| 141 | 141 | 0.538 |
| 142 | 142 | 0.931 |
| 143 | 143 | 0.316 |
| 144 | 144 | 0.992 |
| 145 | 145 | 0.92 |
| 146 | 146 | 0.187 |
| 147 | 147 | 0.0783 |
| 148 | 148 | 0.0606 |
| 149 | 149 | 0.118 |
| 15 | 15 | 0.0233 |
| 150 | 150 | 0.617 |
| 151 | 151 | 0.237 |
| 152 | 152 | 0.535 |
| 153 | 153 | 0.615 |
| 154 | 154 | 0.523 |
| 155 | 155 | 0.00826 |
| 156 | 156 | 0.505 |
| 157 | 157 | 0.99 |
| 158 | 158 | 0.248 |
| 159 | 159 | 0.232 |
| 16 | 16 | 0.91 |
| 160 | 160 | 0.364 |
| 161 | 161 | 0.353 |
| 162 | 162 | 0.562 |
| 163 | 163 | 0.81 |
| 164 | 164 | 0.459 |
| 165 | 165 | 0.514 |
| 166 | 166 | 0.0292 |
| 167 | 167 | 0.226 |
| 168 | 168 | 0.893 |
| 169 | 169 | 0.281 |
| 17 | 17 | 0.799 |
| 18 | 18 | 0.624 |
| 19 | 19 | 0.182 |
| 2 | 2 | 0.7 |
| 20 | 20 | 0.559 |
| 21 | 21 | 0.158 |
| 22 | 22 | 0.895 |
| 23 | 23 | 0.587 |
| 24 | 24 | 0.171 |
| 25 | 25 | 0.109 |
| 26 | 26 | 0.818 |
| 27 | 27 | 0.398 |
| 28 | 28 | 0.672 |
| 29 | 29 | 0.863 |
| 3 | 3 | 0.673 |
| 30 | 30 | 0.502 |
| 31 | 31 | 0.671 |
| 32 | 32 | 3.08185e-7 |
| 33 | 33 | 0.402 |
| 34 | 34 | 0.782 |
| 35 | 35 | 0.637 |
| 36 | 36 | 0.0347 |
| 37 | 37 | 0.64 |
| 38 | 38 | 0.362 |
| 39 | 39 | 0.486 |
| 4 | 4 | 0.231 |
| 40 | 40 | 0.0246 |
| 41 | 41 | 0.453 |
| 42 | 42 | 0.268 |
| 43 | 43 | 0.443 |
| 44 | 44 | 0.157 |
| 45 | 45 | 0.463 |
| 46 | 46 | 0.493 |
| 47 | 47 | 0.134 |
| 48 | 48 | 0.413 |
| 49 | 49 | 0.0529 |
| 5 | 5 | 0.807 |
| 50 | 50 | 0.525 |
| 51 | 51 | 0.448 |
| 52 | 52 | 0.762 |
| 53 | 53 | 0.358 |
| 54 | 54 | 0.557 |
| 55 | 55 | 0.409 |
| 56 | 56 | 0.297 |
| 57 | 57 | 0.448 |
| 58 | 58 | 0.137 |
| 59 | 59 | 0.925 |
| 6 | 6 | 0.612 |
| 60 | 60 | 0.199 |
| 61 | 61 | 0.171 |
| 62 | 62 | 0.144 |
| 63 | 63 | 0.665 |
| 64 | 64 | 0.121 |
| 65 | 65 | 0.651 |
| 66 | 66 | 0.225 |
| 67 | 67 | 0.902 |
| 68 | 68 | 0.562 |
| 69 | 69 | 0.351 |
| 7 | 7 | 0.0955 |
| 70 | 70 | 0.359 |
| 71 | 71 | 0.398 |
| 72 | 72 | 0.36 |
| 73 | 73 | 0.315 |
| 74 | 74 | 0.38 |
| 75 | 75 | 0.353 |
| 76 | 76 | 0.896 |
| 77 | 77 | 0.53 |
| 78 | 78 | 0.0292 |
| 79 | 79 | 0.00724 |
| 8 | 8 | 0.0954 |
| 80 | 80 | 0.836 |
| 81 | 81 | 0.412 |
| 82 | 82 | 0.798 |
| 83 | 83 | 0.0436 |
| 84 | 84 | 0.124 |
| 85 | 85 | 0.433 |
| 86 | 86 | 0.606 |
| 87 | 87 | 0.393 |
| 88 | 88 | 0.645 |
| 89 | 89 | 0.845 |
| 9 | 9 | 0.838 |
| 90 | 90 | 0.159 |
| 91 | 91 | 0.996 |
| 92 | 92 | 0.711 |
| 93 | 93 | 0.642 |
| 94 | 94 | 0.716 |
| 95 | 95 | 0.343 |
| 96 | 96 | 0.944 |
| 97 | 97 | 0.521 |
| 98 | 98 | 0.0593 |
| 99 | 99 | 0.156 |
de novo motifs identified by HOMER in promoters active in this sample<b>Summary:</b>The result of HOMER in this sample is shown.<br><b>Analyst:</b>NA <br>
library id: CNhs12403
FANTOM5 (FF) ontology
Direct parent terms
is_a relathionship
EFO:0002091 biological replicate
FF:0000668 human Fibroblast - skin normal, nuclear fraction sample
Ancestor terms (non development)<b>Summary:</b>Connected ontology terms with is_a, part_of or located_in relationship <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source data<br>data
CL: Cell type
0000000 (cell), 0000000 (cell)
0000003 (native cell)
0000548 (animal cell)
0002320 (connective tissue cell)
0002371 (somatic cell)
0000255 (eukaryotic cell)
0000057 (fibroblast)
0002620 (skin fibroblast)
UBERON: Anatomy
0000468 (multi-cellular organism)
0002097 (skin of body)
0002199 (integument)
0002384 (connective tissue)
0000479 (tissue)
0000062 (organ)
0000061 (anatomical structure)
0000465 (material anatomical entity)
0000467 (anatomical system)
0001062 (anatomical entity)
0000480 (anatomical group)
0003102 (surface structure)
0002416 (integumental system)
FF: FANTOM5
0000102 (sample by type)
0000210 (human sample)
0000002 (in vivo cell sample)
0000101 (sample by species)
0000057 (fibroblast sample)
0000250 (human fibroblast of skin sample)
0000001 (sample)
0000408 (cellular fractionation sample)
0000350 (experimentally modified sample)
0000406 (nuclear fraction sample)
0000668 (human Fibroblast - skin normal, nuclear fraction sample)
Ancestor terms (development)<b>Summary:</b>Connected ontology terms with develops_from, derives_from or preceded_by relationship <br><b>Analyst:</b> Hideya Kawaji <br><br>link to source data<br>data
CL:0000134 (mesenchymal cell)
