FF:14326-155E6: Difference between revisions
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{{f5samples | {{f5samples | ||
|ancestors_in_anatomy_facet=UBERON:0000468,UBERON:0002097,UBERON:0002199,UBERON:0002384,UBERON:0000479,UBERON:0000062 | |DRA_sample_Accession=CAGE@SAMD00005054 | ||
|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003 | |accession_numbers=CAGE;DRX008039;DRR008911;DRZ000336;DRZ001721;DRZ011686;DRZ013071 | ||
|ancestors_in_anatomy_facet=UBERON:0000468,UBERON:0002097,UBERON:0002199,UBERON:0002384,UBERON:0000479,UBERON:0000062,UBERON:0000061,UBERON:0000465,UBERON:0000467,UBERON:0001062,UBERON:0000480,UBERON:0003102,UBERON:0002416 | |||
|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000548,CL:0002320,CL:0002371,CL:0000255,CL:0000057,CL:0002620 | |||
|ancestors_in_disease_facet= | |ancestors_in_disease_facet= | ||
|ancestors_in_ff_facet=FF:0000102,FF:0000210,FF:0000002,FF:0000101,FF:0000057,FF:0000250,FF:0000001,FF:0000408,FF:0000350,FF:0000251,FF:0000406,FF:0000670 | |||
|comment= | |comment= | ||
|created_by= | |created_by= | ||
|creation_date= | |creation_date= | ||
|data_phase=2 | |||
|datafreeze_phase=2 | |||
|def= | |def= | ||
|expression_enrichment_score=chr1:197886461..197886558,+!p1@LHX9!2.39!243.35!LHX9;;chr7:19157248..19157268,-!p1@TWIST1!1.92!217.60!TWIST1;;chr9:132427883..132427951,+!p2@PRRX2!1.75!55.28!PRRX2;;chr12:54410664..54410684,+!p1@HOXC4,p1@HOXC5,p1@HOXC6!1.72!50.99!HOXC5;;chr15:57511609..57511651,+!p2@TCF12!1.66!72.95!TCF12;;chr15:37392534..37392562,-!p10@MEIS2!1.50!33.83!MEIS2;;chr5:72744594..72744609,-!p1@FOXD1!1.42!113.09!FOXD1;;chr4:174451370..174451387,-!p1@HAND2!1.42!25.24!HAND2;;chr15:37392616..37392638,-!p2@MEIS2!1.36!66.64!MEIS2;;chr2:176969097..176969109,+!p3@HOXD11!1.34!20.70!HOXD11;;chrY:21906594..21906622,-!p1@KDM5D!1.34!20.70!KDM5D;;chr15:37392703..37392717,-!p8@MEIS2!1.33!28.78!MEIS2;;chr15:37392724..37392757,-!p1@MEIS2!1.27!79.26!MEIS2;;chr2:19558373..19558392,-!p1@OSR1!1.27!47.96!OSR1;;chr8:93074803..93074845,-!p1@RUNX1T1!1.27!17.67!RUNX1T1;;chr6:10415276..10415341,-!p2@TFAP2A!1.24!20.19!TFAP2A;;chr7:27192185..27192209,-!p1@HOXA3!1.23!15.90!HOXA3;;chr21:36260773..36260804,-!p7@RUNX1!1.22!21.20!RUNX1;;chr5:321810..321877,+!p1@AHRR!1.21!48.47!AHRR;;chr1:170632285..170632309,+!p1@PRRX1!1.20!16.66!PRRX1;;chr5:2751762..2751784,-!p1@IRX2!1.20!14.89!IRX2;;chr19:13134772..13134822,+!p2@NFIX!1.19!21.20!NFIX;;chr10:63809106..63809127,+!p1@ARID5B!1.18!188.82!ARID5B;;chr9:132427972..132428056,+!p1@PRRX2!1.18!18.43!PRRX2;;chr10:119303078..119303169,+!p2@EMX2!1.18!14.14!EMX2;;chr2:102091566..102091581,-!p1@RFX8!1.17!13.88!RFX8;;chr2:239756671..239756732,+!p1@TWIST2!1.16!43.17!TWIST2;;chr2:176969124..176969155,+!p5@HOXD11!1.15!13.13!HOXD11;;chr19:45971246..45971265,+!p1@FOSB!1.11!218.36!FOSB;;chr12:54410639..54410659,+!p2@HOXC4,p2@HOXC5,p2@HOXC6!1.09!11.36!HOXC5;;chr14:24837368..24837401,+!p1@NFATC4!1.07!25.75!NFATC4;;chr7:44143925..44143970,+!p1@AEBP1!1.06!236.03!AEBP1;;chr15:37392576..37392589,-!p12@MEIS2!1.06!12.87!MEIS2;;chr19:47523058..47523114,+!p1@NPAS1!1.05!10.35!NPAS1;;chr11:46299199..46299233,+!p1@CREB3L1!1.04!52.76!CREB3L1;;chr11:46299539..46299620,+!p2@CREB3L1!1.04!16.91!CREB3L1;;chr3:147111198..147111225,+!p4@ZIC1!1.04!9.84!ZIC1;;chr15:37390850..37390909,-!p3@MEIS2!1.03!19.44!MEIS2;;chr1:54204818..54204870,-!p@chr1:54204818..54204870,-!1.03!10.35!GLIS1;;chr1:170633348..170633399,+!p2@PRRX1!1.02!13.13!PRRX1;;chr15:37390482..37390572,-!p7@MEIS2!1.02!13.13!MEIS2;;chr2:177001290..177001315,+!p1@HOXD3!1.02!9.59!HOXD3;;chr3:147111231..147111281,+!p3@ZIC1!1.02!9.59!ZIC1;;chr12:115121962..115121987,-!p1@TBX3!1.01!79.26!TBX3;;chr2:239756739..239756755,+!p2@TWIST2!1.01!16.16!TWIST2;;chr11:46316699..46316719,+!p10@CREB3L1!1.00!9.09!CREB3L1;;chr12:114843940..114843955,-!p2@TBX5!1.00!9.09!TBX5;;chr2:200322654..200322707,-!p2@SATB2!0.99!12.87!SATB2;;chr20:50179368..50179392,-!p2@NFATC2!0.99!11.36!NFATC2;;chr15:37392593..37392607,-!p13@MEIS2!0.99!10.60!MEIS2;;chr1:197886421..197886432,+!p2@LHX9!0.99!8.84!LHX9;;chr12:114845810..114845824,-!p1@TBX5!0.99!8.84!TBX5;;chr14:61116183..61116208,-!p1@SIX1!0.98!33.07!SIX1;;chr7:137686763..137686784,-!p5@CREB3L2!0.98!15.15!CREB3L2;;chr5:158527139..158527161,-!p5@EBF1!0.97!8.33!EBF1;;chr8:93074848..93074871,-!p3@RUNX1T1!0.97!8.33!RUNX1T1;;chrY:2803415..2803468,+!p1@ZFY!0.97!8.33!ZFY;;chr10:114710244..114710257,+!p3@TCF7L2!0.96!22.47!TCF7L2;;chr7:44143978..44143989,+!p2@AEBP1!0.96!15.15!AEBP1;;chr20:55204351..55204377,+!p1@TFAP2C!0.96!10.35!TFAP2C;;chr5:3595977..3595999,+!p1@IRX1!0.96!8.08!IRX1;;chr2:176969228..176969260,+!p1@HOXD11!0.96!8.08!HOXD11;;chr6:19837592..19837621,+!p1@ID4!0.95!49.48!ID4;;chr10:63809077..63809089,+!p5@ARID5B!0.95!17.42!ARID5B;;chr7:27213893..27213954,-!p1@HOXA10!0.95!7.83!HOXA10;;chr6:144329384..144329405,-!p1@PLAGL1!0.94!92.39!PLAGL1;;chr14:62162258..62162269,+!p2@HIF1A!0.93!75.73!HIF1A;;chr10:63661437..63661465,+!p2@ARID5B!0.92!145.15!ARID5B;;chr3:114343768..114343822,-!p1@ZBTB20!0.92!33.57!ZBTB20;;chr6:85474299..85474324,-!p1@TBX18!0.92!13.38!TBX18;;chr15:37390374..37390422,-!p9@MEIS2!0.92!9.09!MEIS2;;chr2:176969179..176969226,+!p2@HOXD11!0.92!7.32!HOXD11;;chr5:158526917..158526932,-!p1@EBF1!0.91!18.43!EBF1;;chr5:158526459..158526481,-!p2@EBF1!0.91!9.59!EBF1;;chr6:134210243..134210257,+!p1@TCF21!0.91!7.07!TCF21;;chr10:119302232..119302265,+!p1@EMX2!0.91!7.07!EMX2;;chr10:28034739..28034756,-!p1@MKX!0.91!7.07!MKX;;chr12:54402745..54402788,+!p1@HOXC8!0.91!7.07!HOXC8;;chr12:66218598..66218645,+!p2@HMGA2!0.90!33.32!HMGA2;;chr8:67525443..67525459,-!p2@MYBL1!0.90!10.60!MYBL1;;chr12:53614115..53614154,-!p1@RARG!0.89!37.61!RARG;;chr18:22932080..22932170,-!p1@ZNF521!0.89!30.04!ZNF521;;chr7:42276787..42276815,-!p1@GLI3!0.89!18.93!GLI3;;chr6:100912785..100912822,-!p1@SIM1!0.89!6.82!SIM1;;chr11:65687222..65687240,+!p7@DRAP1!0.88!8.58!DRAP1;;chr4:174450089..174450153,-!p2@HAND2!0.88!6.56!HAND2;;chr7:150945754..150945789,-!p2@SMARCD3!0.87!20.95!SMARCD3;;chr1:200379104..200379128,-!p2@ZNF281!0.87!16.41!ZNF281;;chr1:197886665..197886732,+!p3@LHX9!0.86!6.31!LHX9;;chr7:27224842..27224872,-!p1@HOXA11!0.86!6.31!HOXA11;;chr12:80085061..80085119,-!p6@PAWR!0.85!10.10!PAWR;;chr3:141121847..141121868,+!p5@ZBTB38!0.85!9.59!ZBTB38;;chr3:21792585..21792625,-!p2@ZNF385D!0.85!6.82!ZNF385D;;chr2:102091144..102091183,-!p2@RFX8!0.85!6.06!RFX8;;chr7:27205136..27205164,-!p1@HOXA9!0.85!6.06!HOXA9;;chr12:124873357..124873401,-!p1@NCOR2!0.84!73.96!NCOR2;;chr6:10412600..10412637,-!p1@TFAP2A!0.84!10.10!TFAP2A;;chr14:62162285..62162296,+!p3@HIF1A!0.83!32.31!HIF1A;;chr21:36259445..36259519,-!p4@RUNX1!0.83!16.91!RUNX1;;chr5:72743793..72743855,-!p4@FOXD1!0.83!6.82!FOXD1;;chr18:53068911..53068935,-!p4@TCF4!0.83!6.56!TCF4;;chr10:119302645..119302712,+!p3@EMX2!0.82!5.55!EMX2;;chr8:93115274..93115323,-!p4@RUNX1T1!0.82!5.55!RUNX1T1;;chr1:119530857..119530884,-!p4@TBX15!0.82!5.55!TBX15;;chr2:121493425..121493474,+!p1@GLI2!0.81!12.62!GLI2;;chr16:54964740..54964789,+!p1@IRX5!0.81!8.08!IRX5;;chr2:208031943..208031978,-!p5@KLF7!0.81!7.57!KLF7;;chr9:16870659..16870675,-!p2@BNC2!0.80!6.56!BNC2;;chr17:46682321..46682362,-!p1@HOXB6!0.80!5.30!HOXB6;;chr5:158527104..158527135,-!p4@EBF1!0.80!5.30!EBF1;;chr6:85474198..85474212,-!p3@TBX18!0.80!5.30!TBX18;;chrX:128657457..128657475,-!p1@SMARCA1!0.79!64.37!SMARCA1;;chr1:158979792..158979814,+!p2@IFI16!0.79!54.02!IFI16;;chr10:63809013..63809041,+!p3@ARID5B!0.79!31.05!ARID5B;;chr3:71630980..71631110,-!p3@FOXP1!0.79!19.18!FOXP1;;chr12:66218255..66218304,+!p3@HMGA2!0.79!14.89!HMGA2;;chr4:95128841..95128865,+!p4@SMARCAD1!0.79!11.36!SMARCAD1;;chr15:37392094..37392116,-!p6@MEIS2!0.79!6.56!MEIS2;;chr7:19157043..19157088,-!p2@TWIST1!0.78!13.63!TWIST1;;chr10:70320074..70320106,+!p1@TET1!0.78!10.60!TET1;;chr7:27224795..27224840,-!p2@HOXA11!0.78!5.05!HOXA11;;chr8:106330656..106330684,+!p1@ZFPM2!0.77!13.88!ZFPM2;;chr15:37391271..37391376,-!p5@MEIS2!0.77!9.59!MEIS2;;chr5:43067636..43067674,+!p6@ZNF131!0.77!6.82!ZNF131;;chr11:12696071..12696086,+!p3@TEAD1!0.77!6.56!TEAD1;;chr3:157823517..157823562,-!p1@SHOX2!0.77!5.30!SHOX2;;chr10:63809134..63809145,+!p6@ARID5B!0.76!11.86!ARID5B;;chr18:56532100..56532130,+!p1@ZNF532!0.76!9.34!ZNF532;;chr15:37391588..37391604,-!p11@MEIS2!0.76!6.31!MEIS2;;chr2:176973498..176973524,+!p1@HOXD10!0.76!4.80!HOXD10;;chr3:138665969..138665993,-!p2@FOXL2!0.76!4.80!FOXL2;;chr8:93115584..93115642,-!p5@RUNX1T1!0.76!4.80!RUNX1T1;;chr14:62162224..62162254,+!p1@HIF1A!0.75!745.94!HIF1A;;chr11:65686802..65686818,+!p6@DRAP1!0.75!8.58!DRAP1;;chr2:121493492..121493537,+!p2@GLI2!0.75!8.08!GLI2;;chr21:36260295..36260310,-!p3@RUNX1!0.75!7.83!RUNX1;;chr3:128206762..128206781,-!p2@GATA2!0.74!31.05!GATA2;;chr5:72744445..72744466,-!p2@FOXD1!0.74!7.83!FOXD1;;chr1:170632959..170632987,+!p4@PRRX1!0.74!5.05!PRRX1;;chr1:119530636..119530653,-!p2@TBX15!0.74!4.54!TBX15;;chr1:119530706..119530736,-!p3@TBX15!0.74!4.54!TBX15;;chr1:170632250..170632277,+!p7@PRRX1!0.74!4.54!PRRX1;;chr15:80843484..80843499,+!p5@ARNT2!0.74!4.54!ARNT2;;chr16:31076332..31076388,-!p3@ZNF668!0.74!4.54!ZNF668;;chr5:2751785..2751808,-!p2@IRX2!0.74!4.54!IRX2;;chr3:138665937..138665968,-!p1@FOXL2!0.74!4.54!FOXL2;;chr3:42695180..42695201,+!p2@ZBTB47!0.74!4.54!ZBTB47;;chr5:137801160..137801176,+!p1@EGR1!0.73!486.19!EGR1;;chr1:158979872..158979898,+!p3@IFI16!0.73!14.89!IFI16;;chr20:51588873..51588953,+!p1@TSHZ2!0.73!6.06!TSHZ2;;chr3:150126759..150126784,+!p2@TSC22D2!0.72!21.71!TSC22D2;;chr8:99956662..99956684,+!p1@OSR2!0.72!6.82!OSR2;;chr22:19748231..19748317,+!p1@TBX1!0.72!4.29!TBX1;;chr2:102091590..102091601,-!p5@RFX8!0.72!4.29!RFX8;;chr2:172950227..172950249,+!p2@DLX1!0.72!4.29!DLX1;;chr2:172967242..172967265,-!p2@DLX2!0.72!4.29!DLX2;;chr13:37494275..37494304,-!p2@SMAD9!0.72!4.29!SMAD9;;chr1:119530493..119530572,-!p1@TBX15!0.72!4.29!TBX15;;chr1:170633194..170633205,+!p18@PRRX1!0.72!4.29!PRRX1;;chr19:13135582..13135600,+!p3@NFIX!0.72!4.29!NFIX;;chr2:208394817..208394834,+!p3@CREB1!0.71!18.68!CREB1;;chr20:30193083..30193098,+!p1@ID1!0.70!371.33!ID1;;chr11:65687362..65687436,+!p3@DRAP1!0.70!20.70!DRAP1;;chr6:28411241..28411284,-!p1@ZSCAN23!0.70!14.14!ZSCAN23;;chr6:100912752..100912778,-!p2@SIM1!0.70!4.04!SIM1;;chr7:27205106..27205134,-!p2@HOXA9!0.70!4.04!HOXA9;;chr12:54410948..54410992,+!p3@HOXC5!0.70!4.04!HOXC5;;chr18:52969674..52969685,-!p24@TCF4!0.70!4.04!TCF4;;chr19:13135386..13135435,+!p4@NFIX!0.70!4.04!NFIX;;chr4:111558135..111558198,-!p2@PITX2!0.70!4.04!PITX2;;chr2:66662281..66662308,+!p1@MEIS1!0.69!14.89!MEIS1;;chr5:72744562..72744573,-!p3@FOXD1!0.69!5.05!FOXD1;;chr1:170633262..170633285,+!p3@PRRX1!0.69!4.54!PRRX1;;chr14:75745523..75745537,+!p1@FOS!0.68!529.10!FOS;;chr2:208031542..208031595,-!p2@KLF7!0.68!30.80!KLF7;;chr14:73360799..73360817,-!p1@DPF3!0.68!14.89!DPF3;;chr18:53254566..53254567,-!p8@TCF4!0.68!6.56!TCF4;;chr10:119302508..119302559,+!p5@EMX2!0.68!3.79!EMX2;;chr12:54422217..54422239,+!p3@HOXC6!0.68!3.79!HOXC6;;chr2:85981107..85981120,+!p3@ATOH8!0.68!3.79!ATOH8;;chr1:170632723..170632739,+!p8@PRRX1!0.68!3.79!PRRX1;;chr15:37393449..37393528,-!p4@MEIS2!0.67!11.11!MEIS2;;chr19:11909329..11909394,+!p1@ZNF491!0.67!8.33!ZNF491;;chr1:151431811..151431832,-!p3@POGZ!0.67!6.56!POGZ;;chr12:115122005..11512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| |expression_enrichment_score=chr1:197886461..197886558,+!p1@LHX9!2.39!243.35!LHX9;;chr7:19157248..19157268,-!p1@TWIST1!1.92!217.60!TWIST1;;chr9:132427883..132427951,+!p2@PRRX2!1.75!55.28!PRRX2;;chr12:54410664..54410684,+!p1@HOXC4,p1@HOXC5,p1@HOXC6!1.72!50.99!HOXC5;;chr15:57511609..57511651,+!p2@TCF12!1.66!72.95!TCF12;;chr15:37392534..37392562,-!p10@MEIS2!1.50!33.83!MEIS2;;chr5:72744594..72744609,-!p1@FOXD1!1.42!113.09!FOXD1;;chr4:174451370..174451387,-!p1@HAND2!1.42!25.24!HAND2;;chr15:37392616..37392638,-!p2@MEIS2!1.36!66.64!MEIS2;;chr2:176969097..176969109,+!p3@HOXD11!1.34!20.70!HOXD11;;chrY:21906594..21906622,-!p1@KDM5D!1.34!20.70!KDM5D;;chr15:37392703..37392717,-!p8@MEIS2!1.33!28.78!MEIS2;;chr15:37392724..37392757,-!p1@MEIS2!1.27!79.26!MEIS2;;chr2:19558373..19558392,-!p1@OSR1!1.27!47.96!OSR1;;chr8:93074803..93074845,-!p1@RUNX1T1!1.27!17.67!RUNX1T1;;chr6:10415276..10415341,-!p2@TFAP2A!1.24!20.19!TFAP2A;;chr7:27192185..27192209,-!p1@HOXA3!1.23!15.90!HOXA3;;chr21:36260773..36260804,-!p7@RUNX1!1.22!21.20!RUNX1;;chr5:321810..321877,+!p1@AHRR!1.21!48.47!AHRR;;chr1:170632285..170632309,+!p1@PRRX1!1.20!16.66!PRRX1;;chr5:2751762..2751784,-!p1@IRX2!1.20!14.89!IRX2;;chr19:13134772..13134822,+!p2@NFIX!1.19!21.20!NFIX;;chr10:63809106..63809127,+!p1@ARID5B!1.18!188.82!ARID5B;;chr9:132427972..132428056,+!p1@PRRX2!1.18!18.43!PRRX2;;chr10:119303078..119303169,+!p2@EMX2!1.18!14.14!EMX2;;chr2:102091566..102091581,-!p1@RFX8!1.17!13.88!RFX8;;chr2:239756671..239756732,+!p1@TWIST2!1.16!43.17!TWIST2;;chr2:176969124..176969155,+!p5@HOXD11!1.15!13.13!HOXD11;;chr19:45971246..45971265,+!p1@FOSB!1.11!218.36!FOSB;;chr12:54410639..54410659,+!p2@HOXC4,p2@HOXC5,p2@HOXC6!1.09!11.36!HOXC5;;chr14:24837368..24837401,+!p1@NFATC4!1.07!25.75!NFATC4;;chr7:44143925..44143970,+!p1@AEBP1!1.06!236.03!AEBP1;;chr15:37392576..37392589,-!p12@MEIS2!1.06!12.87!MEIS2;;chr19:47523058..47523114,+!p1@NPAS1!1.05!10.35!NPAS1;;chr11:46299199..46299233,+!p1@CREB3L1!1.04!52.76!CREB3L1;;chr11:46299539..46299620,+!p2@CREB3L1!1.04!16.91!CREB3L1;;chr3:147111198..147111225,+!p4@ZIC1!1.04!9.84!ZIC1;;chr15:37390850..37390909,-!p3@MEIS2!1.03!19.44!MEIS2;;chr1:54204818..54204870,-!p@chr1:54204818..54204870,-!1.03!10.35!GLIS1;;chr1:170633348..170633399,+!p2@PRRX1!1.02!13.13!PRRX1;;chr15:37390482..37390572,-!p7@MEIS2!1.02!13.13!MEIS2;;chr2:177001290..177001315,+!p1@HOXD3!1.02!9.59!HOXD3;;chr3:147111231..147111281,+!p3@ZIC1!1.02!9.59!ZIC1;;chr12:115121962..115121987,-!p1@TBX3!1.01!79.26!TBX3;;chr2:239756739..239756755,+!p2@TWIST2!1.01!16.16!TWIST2;;chr11:46316699..46316719,+!p10@CREB3L1!1.00!9.09!CREB3L1;;chr12:114843940..114843955,-!p2@TBX5!1.00!9.09!TBX5;;chr2:200322654..200322707,-!p2@SATB2!0.99!12.87!SATB2;;chr20:50179368..50179392,-!p2@NFATC2!0.99!11.36!NFATC2;;chr15:37392593..37392607,-!p13@MEIS2!0.99!10.60!MEIS2;;chr1:197886421..197886432,+!p2@LHX9!0.99!8.84!LHX9;;chr12:114845810..114845824,-!p1@TBX5!0.99!8.84!TBX5;;chr14:61116183..61116208,-!p1@SIX1!0.98!33.07!SIX1;;chr7:137686763..137686784,-!p5@CREB3L2!0.98!15.15!CREB3L2;;chr5:158527139..158527161,-!p5@EBF1!0.97!8.33!EBF1;;chr8:93074848..93074871,-!p3@RUNX1T1!0.97!8.33!RUNX1T1;;chrY:2803415..2803468,+!p1@ZFY!0.97!8.33!ZFY;;chr10:114710244..114710257,+!p3@TCF7L2!0.96!22.47!TCF7L2;;chr7:44143978..44143989,+!p2@AEBP1!0.96!15.15!AEBP1;;chr20:55204351..55204377,+!p1@TFAP2C!0.96!10.35!TFAP2C;;chr5:3595977..3595999,+!p1@IRX1!0.96!8.08!IRX1;;chr2:176969228..176969260,+!p1@HOXD11!0.96!8.08!HOXD11;;chr6:19837592..19837621,+!p1@ID4!0.95!49.48!ID4;;chr10:63809077..63809089,+!p5@ARID5B!0.95!17.42!ARID5B;;chr7:27213893..27213954,-!p1@HOXA10!0.95!7.83!HOXA10;;chr6:144329384..144329405,-!p1@PLAGL1!0.94!92.39!PLAGL1;;chr14:62162258..62162269,+!p2@HIF1A!0.93!75.73!HIF1A;;chr10:63661437..63661465,+!p2@ARID5B!0.92!145.15!ARID5B;;chr3:114343768..114343822,-!p1@ZBTB20!0.92!33.57!ZBTB20;;chr6:85474299..85474324,-!p1@TBX18!0.92!13.38!TBX18;;chr15:37390374..37390422,-!p9@MEIS2!0.92!9.09!MEIS2;;chr2:176969179..176969226,+!p2@HOXD11!0.92!7.32!HOXD11;;chr5:158526917..158526932,-!p1@EBF1!0.91!18.43!EBF1;;chr5:158526459..158526481,-!p2@EBF1!0.91!9.59!EBF1;;chr6:134210243..134210257,+!p1@TCF21!0.91!7.07!TCF21;;chr10:119302232..119302265,+!p1@EMX2!0.91!7.07!EMX2;;chr10:28034739..28034756,-!p1@MKX!0.91!7.07!MKX;;chr12:54402745..54402788,+!p1@HOXC8!0.91!7.07!HOXC8;;chr12:66218598..66218645,+!p2@HMGA2!0.90!33.32!HMGA2;;chr8:67525443..67525459,-!p2@MYBL1!0.90!10.60!MYBL1;;chr12:53614115..53614154,-!p1@RARG!0.89!37.61!RARG;;chr18:22932080..22932170,-!p1@ZNF521!0.89!30.04!ZNF521;;chr7:42276787..42276815,-!p1@GLI3!0.89!18.93!GLI3;;chr6:100912785..100912822,-!p1@SIM1!0.89!6.82!SIM1;;chr11:65687222..65687240,+!p7@DRAP1!0.88!8.58!DRAP1;;chr4:174450089..174450153,-!p2@HAND2!0.88!6.56!HAND2;;chr7:150945754..150945789,-!p2@SMARCD3!0.87!20.95!SMARCD3;;chr1:200379104..200379128,-!p2@ZNF281!0.87!16.41!ZNF281;;chr1:197886665..197886732,+!p3@LHX9!0.86!6.31!LHX9;;chr7:27224842..27224872,-!p1@HOXA11!0.86!6.31!HOXA11;;chr12:80085061..80085119,-!p6@PAWR!0.85!10.10!PAWR;;chr3:141121847..141121868,+!p5@ZBTB38!0.85!9.59!ZBTB38;;chr3:21792585..21792625,-!p2@ZNF385D!0.85!6.82!ZNF385D;;chr2:102091144..102091183,-!p2@RFX8!0.85!6.06!RFX8;;chr7:27205136..27205164,-!p1@HOXA9!0.85!6.06!HOXA9;;chr12:124873357..124873401,-!p1@NCOR2!0.84!73.96!NCOR2;;chr6:10412600..10412637,-!p1@TFAP2A!0.84!10.10!TFAP2A;;chr14:62162285..62162296,+!p3@HIF1A!0.83!32.31!HIF1A;;chr21:36259445..36259519,-!p4@RUNX1!0.83!16.91!RUNX1;;chr5:72743793..72743855,-!p4@FOXD1!0.83!6.82!FOXD1;;chr18:53068911..53068935,-!p4@TCF4!0.83!6.56!TCF4;;chr10:119302645..119302712,+!p3@EMX2!0.82!5.55!EMX2;;chr8:93115274..93115323,-!p4@RUNX1T1!0.82!5.55!RUNX1T1;;chr1:119530857..119530884,-!p4@TBX15!0.82!5.55!TBX15;;chr2:121493425..121493474,+!p1@GLI2!0.81!12.62!GLI2;;chr16:54964740..54964789,+!p1@IRX5!0.81!8.08!IRX5;;chr2:208031943..208031978,-!p5@KLF7!0.81!7.57!KLF7;;chr9:16870659..16870675,-!p2@BNC2!0.80!6.56!BNC2;;chr17:46682321..46682362,-!p1@HOXB6!0.80!5.30!HOXB6;;chr5:158527104..158527135,-!p4@EBF1!0.80!5.30!EBF1;;chr6:85474198..85474212,-!p3@TBX18!0.80!5.30!TBX18;;chrX:128657457..128657475,-!p1@SMARCA1!0.79!64.37!SMARCA1;;chr1:158979792..158979814,+!p2@IFI16!0.79!54.02!IFI16;;chr10:63809013..63809041,+!p3@ARID5B!0.79!31.05!ARID5B;;chr3:71630980..71631110,-!p3@FOXP1!0.79!19.18!FOXP1;;chr12:66218255..66218304,+!p3@HMGA2!0.79!14.89!HMGA2;;chr4:95128841..95128865,+!p4@SMARCAD1!0.79!11.36!SMARCAD1;;chr15:37392094..37392116,-!p6@MEIS2!0.79!6.56!MEIS2;;chr7:19157043..19157088,-!p2@TWIST1!0.78!13.63!TWIST1;;chr10:70320074..70320106,+!p1@TET1!0.78!10.60!TET1;;chr7:27224795..27224840,-!p2@HOXA11!0.78!5.05!HOXA11;;chr8:106330656..106330684,+!p1@ZFPM2!0.77!13.88!ZFPM2;;chr15:37391271..37391376,-!p5@MEIS2!0.77!9.59!MEIS2;;chr5:43067636..43067674,+!p6@ZNF131!0.77!6.82!ZNF131;;chr11:12696071..12696086,+!p3@TEAD1!0.77!6.56!TEAD1;;chr3:157823517..157823562,-!p1@SHOX2!0.77!5.30!SHOX2;;chr10:63809134..63809145,+!p6@ARID5B!0.76!11.86!ARID5B;;chr18:56532100..56532130,+!p1@ZNF532!0.76!9.34!ZNF532;;chr15:37391588..37391604,-!p11@MEIS2!0.76!6.31!MEIS2;;chr2:176973498..176973524,+!p1@HOXD10!0.76!4.80!HOXD10;;chr3:138665969..138665993,-!p2@FOXL2!0.76!4.80!FOXL2;;chr8:93115584..93115642,-!p5@RUNX1T1!0.76!4.80!RUNX1T1;;chr14:62162224..62162254,+!p1@HIF1A!0.75!745.94!HIF1A;;chr11:65686802..65686818,+!p6@DRAP1!0.75!8.58!DRAP1;;chr2:121493492..121493537,+!p2@GLI2!0.75!8.08!GLI2;;chr21:36260295..36260310,-!p3@RUNX1!0.75!7.83!RUNX1;;chr3:128206762..128206781,-!p2@GATA2!0.74!31.05!GATA2;;chr5:72744445..72744466,-!p2@FOXD1!0.74!7.83!FOXD1;;chr1:170632959..170632987,+!p4@PRRX1!0.74!5.05!PRRX1;;chr1:119530636..119530653,-!p2@TBX15!0.74!4.54!TBX15;;chr1:119530706..119530736,-!p3@TBX15!0.74!4.54!TBX15;;chr1:170632250..170632277,+!p7@PRRX1!0.74!4.54!PRRX1;;chr15:80843484..80843499,+!p5@ARNT2!0.74!4.54!ARNT2;;chr16:31076332..31076388,-!p3@ZNF668!0.74!4.54!ZNF668;;chr5:2751785..2751808,-!p2@IRX2!0.74!4.54!IRX2;;chr3:138665937..138665968,-!p1@FOXL2!0.74!4.54!FOXL2;;chr3:42695180..42695201,+!p2@ZBTB47!0.74!4.54!ZBTB47;;chr5:137801160..137801176,+!p1@EGR1!0.73!486.19!EGR1;;chr1:158979872..158979898,+!p3@IFI16!0.73!14.89!IFI16;;chr20:51588873..51588953,+!p1@TSHZ2!0.73!6.06!TSHZ2;;chr3:150126759..150126784,+!p2@TSC22D2!0.72!21.71!TSC22D2;;chr8:99956662..99956684,+!p1@OSR2!0.72!6.82!OSR2;;chr22:19748231..19748317,+!p1@TBX1!0.72!4.29!TBX1;;chr2:102091590..102091601,-!p5@RFX8!0.72!4.29!RFX8;;chr2:172950227..172950249,+!p2@DLX1!0.72!4.29!DLX1;;chr2:172967242..172967265,-!p2@DLX2!0.72!4.29!DLX2;;chr13:37494275..37494304,-!p2@SMAD9!0.72!4.29!SMAD9;;chr1:119530493..119530572,-!p1@TBX15!0.72!4.29!TBX15;;chr1:170633194..170633205,+!p18@PRRX1!0.72!4.29!PRRX1;;chr19:13135582..13135600,+!p3@NFIX!0.72!4.29!NFIX;;chr2:208394817..208394834,+!p3@CREB1!0.71!18.68!CREB1;;chr20:30193083..30193098,+!p1@ID1!0.70!371.33!ID1;;chr11:65687362..65687436,+!p3@DRAP1!0.70!20.70!DRAP1;;chr6:28411241..28411284,-!p1@ZSCAN23!0.70!14.14!ZSCAN23;;chr6:100912752..100912778,-!p2@SIM1!0.70!4.04!SIM1;;chr7:27205106..27205134,-!p2@HOXA9!0.70!4.04!HOXA9;;chr12:54410948..54410992,+!p3@HOXC5!0.70!4.04!HOXC5;;chr18:52969674..52969685,-!p24@TCF4!0.70!4.04!TCF4;;chr19:13135386..13135435,+!p4@NFIX!0.70!4.04!NFIX;;chr4:111558135..111558198,-!p2@PITX2!0.70!4.04!PITX2;;chr2:66662281..66662308,+!p1@MEIS1!0.69!14.89!MEIS1;;chr5:72744562..72744573,-!p3@FOXD1!0.69!5.05!FOXD1;;chr1:170633262..170633285,+!p3@PRRX1!0.69!4.54!PRRX1;;chr14:75745523..75745537,+!p1@FOS!0.68!529.10!FOS;;chr2:208031542..208031595,-!p2@KLF7!0.68!30.80!KLF7;;chr14:73360799..73360817,-!p1@DPF3!0.68!14.89!DPF3;;chr18:53254566..53254567,-!p8@TCF4!0.68!6.56!TCF4;;chr10:119302508..119302559,+!p5@EMX2!0.68!3.79!EMX2;;chr12:54422217..54422239,+!p3@HOXC6!0.68!3.79!HOXC6;;chr2:85981107..85981120,+!p3@ATOH8!0.68!3.79!ATOH8;;chr1:170632723..170632739,+!p8@PRRX1!0.68!3.79!PRRX1;;chr15:37393449..37393528,-!p4@MEIS2!0.67!11.11!MEIS2;;chr19:11909329..11909394,+!p1@ZNF491!0.67!8.33!ZNF491;;chr1:151431811..151431832,-!p3@POGZ!0.67!6.56!POGZ;;chr12:115122005..11512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| ||
|ffid_belonging_in_development=CL:0000134 | |||
|fonse_cell_line= | |fonse_cell_line= | ||
|fonse_cell_line_closure= | |fonse_cell_line_closure= | ||
| Line 35: | Line 41: | ||
|fonse_treatment_closure= | |fonse_treatment_closure= | ||
|has_quality= | |has_quality= | ||
|hg19bam=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.fractionation.hCAGE/Fibroblast%2520-%2520skin%2520spinal%2520muscular%2520atrophy%252c%2520donor1%2520%2528nuclear%2520fraction%2529.CNhs12404.14326-155E6.hg19.nobarcode.bam | |||
|hg19ctss=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.fractionation.hCAGE/Fibroblast%2520-%2520skin%2520spinal%2520muscular%2520atrophy%252c%2520donor1%2520%2528nuclear%2520fraction%2529.CNhs12404.14326-155E6.hg19.ctss.bed.gz | |||
|hg19fasta=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.fractionation.hCAGE/Fibroblast%2520-%2520skin%2520spinal%2520muscular%2520atrophy%252c%2520donor1%2520%2528nuclear%2520fraction%2529.CNhs12404.14326-155E6.hg19.nobarcode.rdna.fa.gz | |||
|hg38bam=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.fractionation.hCAGE/Fibroblast%2520-%2520skin%2520spinal%2520muscular%2520atrophy%252c%2520donor1%2520%2528nuclear%2520fraction%2529.CNhs12404.14326-155E6.hg38.nobarcode.bam | |||
|hg38ctss=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.fractionation.hCAGE/Fibroblast%2520-%2520skin%2520spinal%2520muscular%2520atrophy%252c%2520donor1%2520%2528nuclear%2520fraction%2529.CNhs12404.14326-155E6.hg38.nobarcode.ctss.bed.gz | |||
|id=FF:14326-155E6 | |id=FF:14326-155E6 | ||
|is_a= | |is_a=FF:0000670 | ||
|is_obsolete= | |||
|library_id=CNhs12404 | |||
|library_id_phase_based=2:CNhs12404 | |||
|microRNAs= | |||
|microRNAs_nn= | |||
|microRNAs_nonnovel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer/#/human#cage;sample;14326 | |||
|microRNAs_novel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer_novel/#/human#cage;sample;14326 | |||
|name=Fibroblast - skin spinal muscular atrophy, donor1 (nuclear fraction) | |name=Fibroblast - skin spinal muscular atrophy, donor1 (nuclear fraction) | ||
|namespace=FANTOM5 | |namespace=FANTOM5 | ||
| Line 42: | Line 60: | ||
|profile_cagescan=,,, | |profile_cagescan=,,, | ||
|profile_hcage=CNhs12404,LSID914,release011,COMPLETED | |profile_hcage=CNhs12404,LSID914,release011,COMPLETED | ||
|profile_rnaseq= | |profile_rnaseq= | ||
|profile_srnaseq=,,, | |profile_srnaseq=,,, | ||
|refex=http://refex.dbcls.jp/genelist.php?lang | |||
|repeat_enrich_byfamily=0,0,0,0,0,0,0,-0.160318030086386,0,-0.179607361519099,0.613461728472329,0,0,0,0.0977547706744154,0,0,0,0,0,0,0,0,0,0.0915232255804643,0,0,0,0,0,0.734932568570759,0,0,0.267512778334399,0,0,0,0,0,0,0,0,0,0,0,0,0.0751077207133308,0.393792800119633,0,0,0,0,0,0,0,-0.0242150211128343,0,0,0,0.177498277011549,0,0,0,0.147853874686287,0,0,0.479777084899504,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,-0.0584468268118252,0.168625989495886,0.0488773853372077,0.30313881687167,0.0488773853372077,0.177498277011549,0.256489670705295,0.314909664826129,0,0,0,0,0,0,0,0,0,0,0,0.0977547706744154,0,0,0,0,0,0.026049524041985,0,0,0,-0.0774588925022593,-0.211867797146222,0,0,0.244846235928892,0,0,0 | |||
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| |||
|rna_box=155 | |rna_box=155 | ||
|rna_catalog_number=custom | |rna_catalog_number=custom | ||
| Line 54: | Line 75: | ||
|rna_rin= | |rna_rin= | ||
|rna_sample_type=total RNA | |rna_sample_type=total RNA | ||
|rna_tube_id= | |rna_tube_id=1.55E+08 | ||
|rna_weight_ug=23.65983 | |rna_weight_ug=23.65983 | ||
|sample_age=3 year old child | |sample_age=3 year old child | ||
|sample_category=fractionations and perturbations | |||
|sample_cell_catalog=N/A | |sample_cell_catalog=N/A | ||
|sample_cell_line= | |sample_cell_line= | ||
| Line 69: | Line 91: | ||
|sample_ethnicity=C | |sample_ethnicity=C | ||
|sample_experimental_condition=nuclear RNA | |sample_experimental_condition=nuclear RNA | ||
|sample_gostat=GO:0044464;cell part;0!GO:0005622;intracellular;0!GO:0044424;intracellular part;1.51094386681455e-241!GO:0043226;organelle;2.90895529803791e-199!GO:0043229;intracellular organelle;7.16316714267669e-199!GO:0043231;intracellular membrane-bound organelle;1.12791339204479e-189!GO:0043227;membrane-bound organelle;1.84183121938351e-189!GO:0005737;cytoplasm;8.79300336697078e-154!GO:0044422;organelle part;6.00696568123538e-128!GO:0044446;intracellular organelle part;1.93612677242557e-126!GO:0044444;cytoplasmic part;1.83117744599092e-100!GO:0005634;nucleus;1.95726184858642e-98!GO:0044238;primary metabolic process;1.05669833621419e-97!GO:0043170;macromolecule metabolic process;9.24711068255326e-97!GO:0044237;cellular metabolic process;1.57479106656755e-93!GO:0032991;macromolecular complex;9.94883614161204e-85!GO:0005515;protein binding;3.56482025154581e-82!GO:0044428;nuclear part;2.03574189562288e-76!GO:0043233;organelle lumen;1.87846394064656e-68!GO:0031974;membrane-enclosed lumen;1.87846394064656e-68!GO:0003723;RNA binding;1.16921493375789e-66!GO:0030529;ribonucleoprotein complex;1.89210014301293e-63!GO:0043283;biopolymer metabolic process;3.34700072973429e-61!GO:0006139;nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;6.37941822852804e-56!GO:0016043;cellular component organization and biogenesis;5.18504276793368e-54!GO:0010467;gene expression;5.83455649021474e-51!GO:0006396;RNA processing;5.35822440153275e-48!GO:0031981;nuclear lumen;2.87550654054164e-47!GO:0043234;protein complex;2.49720259741962e-45!GO:0019538;protein metabolic process;2.90353798391748e-45!GO:0033036;macromolecule localization;1.87423293993031e-43!GO:0015031;protein transport;3.61786557936322e-43!GO:0005739;mitochondrion;5.68114994279521e-41!GO:0016071;mRNA metabolic process;2.10388750957568e-39!GO:0008104;protein localization;2.38881960407867e-39!GO:0044260;cellular macromolecule metabolic process;6.11579422211035e-39!GO:0045184;establishment of protein localization;9.83345649813584e-39!GO:0044267;cellular protein metabolic process;2.33554151451296e-38!GO:0006996;organelle organization and biogenesis;5.33212871343551e-38!GO:0046907;intracellular transport;7.06499472517421e-38!GO:0003676;nucleic acid binding;9.69471769555256e-38!GO:0043228;non-membrane-bound organelle;7.00175361267903e-37!GO:0043232;intracellular non-membrane-bound organelle;7.00175361267903e-37!GO:0006412;translation;1.24314576774076e-35!GO:0031090;organelle membrane;1.31818588947777e-34!GO:0006397;mRNA processing;2.83124943525713e-34!GO:0008380;RNA splicing;6.5262479211883e-34!GO:0000166;nucleotide binding;6.93250384820095e-34!GO:0006259;DNA metabolic process;7.92158993755388e-34!GO:0005829;cytosol;1.48130152211002e-32!GO:0005840;ribosome;2.05373223834766e-32!GO:0065003;macromolecular complex assembly;1.05766044895376e-30!GO:0016070;RNA metabolic process;1.32874789629079e-30!GO:0006886;intracellular protein transport;1.65566401236032e-30!GO:0005654;nucleoplasm;6.62085060905282e-30!GO:0022607;cellular component assembly;7.51351009333659e-29!GO:0031967;organelle envelope;8.66285206164471e-28!GO:0003735;structural constituent of ribosome;9.78248336471736e-28!GO:0031975;envelope;1.36341841450019e-27!GO:0007049;cell cycle;1.13412828140895e-26!GO:0044249;cellular biosynthetic process;1.63993523231168e-26!GO:0009058;biosynthetic process;2.25304621275654e-26!GO:0044429;mitochondrial part;2.6240849820292e-26!GO:0009059;macromolecule biosynthetic process;4.70594557329317e-26!GO:0033279;ribosomal subunit;3.94308038773762e-25!GO:0022613;ribonucleoprotein complex biogenesis and assembly;9.31625814998297e-25!GO:0017076;purine nucleotide binding;1.79333280821214e-24!GO:0032553;ribonucleotide binding;1.96203643690965e-24!GO:0032555;purine ribonucleotide binding;1.96203643690965e-24!GO:0044451;nucleoplasm part;2.05463944607023e-24!GO:0016462;pyrophosphatase activity;5.75213534703864e-24!GO:0051649;establishment of cellular localization;5.80867064095695e-24!GO:0051641;cellular localization;8.47293292060761e-24!GO:0016818;hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides;8.47293292060761e-24!GO:0017111;nucleoside-triphosphatase activity;8.74281018851174e-24!GO:0005524;ATP binding;1.04004160905656e-23!GO:0016817;hydrolase activity, acting on acid anhydrides;1.35707662272605e-23!GO:0005681;spliceosome;1.99251652020793e-23!GO:0032559;adenyl ribonucleotide binding;4.41481588583635e-23!GO:0030554;adenyl nucleotide binding;7.11194511592671e-23!GO:0022402;cell cycle process;4.00299474108722e-21!GO:0016874;ligase activity;4.67711032074006e-21!GO:0005830;cytosolic ribosome (sensu Eukaryota);2.49542919185776e-20!GO:0006974;response to DNA damage stimulus;2.30118111215839e-19!GO:0048770;pigment granule;2.6787871784546e-19!GO:0042470;melanosome;2.6787871784546e-19!GO:0000278;mitotic cell cycle;1.25143264313213e-18!GO:0008134;transcription factor binding;1.53735449121999e-18!GO:0006512;ubiquitin cycle;1.41699731828678e-16!GO:0004386;helicase activity;2.97945528740149e-16!GO:0048193;Golgi vesicle transport;4.46991957092102e-16!GO:0005730;nucleolus;5.55843143314103e-16!GO:0006457;protein folding;5.79505982207079e-16!GO:0044445;cytosolic part;5.82257259242015e-16!GO:0006281;DNA repair;1.11861866155767e-15!GO:0051603;proteolysis involved in cellular protein catabolic process;1.24211161934091e-15!GO:0043285;biopolymer catabolic process;1.36812561112265e-15!GO:0044265;cellular macromolecule catabolic process;1.68985396040532e-15!GO:0006511;ubiquitin-dependent protein catabolic process;2.03140859028104e-15!GO:0006119;oxidative phosphorylation;2.163833099653e-15!GO:0019941;modification-dependent protein catabolic process;2.47758948356703e-15!GO:0043632;modification-dependent macromolecule catabolic process;2.47758948356703e-15!GO:0005740;mitochondrial envelope;2.51267736653086e-15!GO:0051276;chromosome organization and biogenesis;2.75232475518317e-15!GO:0012505;endomembrane system;2.93647290729288e-15!GO:0044257;cellular protein catabolic process;3.66961413735588e-15!GO:0005694;chromosome;6.96312754656718e-15!GO:0031966;mitochondrial membrane;7.57144352663429e-15!GO:0019866;organelle inner membrane;8.77983759236132e-15!GO:0050794;regulation of cellular process;9.09586648823747e-15!GO:0016887;ATPase activity;9.13553451823678e-15!GO:0006605;protein targeting;1.09827609262042e-14!GO:0000087;M phase of mitotic cell cycle;1.30674587357247e-14!GO:0000502;proteasome complex (sensu Eukaryota);1.38500927555803e-14!GO:0022403;cell cycle phase;1.51841593026157e-14!GO:0007067;mitosis;2.0135093013576e-14!GO:0009057;macromolecule catabolic process;2.67897805686821e-14!GO:0008135;translation factor activity, nucleic acid binding;3.66285486340818e-14!GO:0042623;ATPase activity, coupled;3.6646432827378e-14!GO:0022618;protein-RNA complex assembly;5.03214020298088e-14!GO:0030163;protein catabolic process;5.25433005696401e-14!GO:0031980;mitochondrial lumen;9.56212381746153e-14!GO:0005759;mitochondrial matrix;9.56212381746153e-14!GO:0009719;response to endogenous stimulus;1.03717242268743e-13!GO:0016192;vesicle-mediated transport;1.14906759433545e-13!GO:0005783;endoplasmic reticulum;1.15973596884539e-13!GO:0005635;nuclear envelope;2.33373951525285e-13!GO:0031965;nuclear membrane;3.07842453966929e-13!GO:0005743;mitochondrial inner membrane;3.36827047751432e-13!GO:0006260;DNA replication;3.58383566135481e-13!GO:0015935;small ribosomal subunit;5.17951918868015e-13!GO:0008026;ATP-dependent helicase activity;5.58581859216658e-13!GO:0003712;transcription cofactor activity;6.83208615097234e-13!GO:0000398;nuclear mRNA splicing, via spliceosome;7.1391087057405e-13!GO:0000375;RNA splicing, via transesterification reactions;7.1391087057405e-13!GO:0000377;RNA splicing, via transesterification reactions with bulged adenosine as nucleophile;7.1391087057405e-13!GO:0015934;large ribosomal subunit;7.75781129500099e-13!GO:0016604;nuclear body;8.02326756207372e-13!GO:0051301;cell division;1.21139207348992e-12!GO:0043412;biopolymer modification;1.55222456973925e-12!GO:0005794;Golgi apparatus;1.8126573152976e-12!GO:0044427;chromosomal part;2.26960564827097e-12!GO:0006325;establishment and/or maintenance of chromatin architecture;2.29335155278969e-12!GO:0005793;ER-Golgi intermediate compartment;3.12999277317319e-12!GO:0044453;nuclear membrane part;3.14185665414382e-12!GO:0006913;nucleocytoplasmic transport;3.57319999905744e-12!GO:0044248;cellular catabolic process;6.26775537447445e-12!GO:0015630;microtubule cytoskeleton;6.36292203797146e-12!GO:0000279;M phase;6.84469595370844e-12!GO:0051169;nuclear transport;7.44413055593166e-12!GO:0006323;DNA packaging;7.5691140222138e-12!GO:0051082;unfolded protein binding;7.98660377122069e-12!GO:0044455;mitochondrial membrane part;8.2608575388306e-12!GO:0044432;endoplasmic reticulum part;9.81562662955096e-12!GO:0051726;regulation of cell cycle;1.97112845532742e-11!GO:0000074;regulation of progression through cell cycle;2.07239743027748e-11!GO:0051186;cofactor metabolic process;2.07290935428915e-11!GO:0016607;nuclear speck;2.75536912438401e-11!GO:0016876;ligase activity, forming aminoacyl-tRNA and related compounds;5.82285326480685e-11!GO:0004812;aminoacyl-tRNA ligase activity;5.82285326480685e-11!GO:0016875;ligase activity, forming carbon-oxygen bonds;5.82285326480685e-11!GO:0003743;translation initiation factor activity;6.76811003748712e-11!GO:0019222;regulation of metabolic process;7.88282430166866e-11!GO:0042254;ribosome biogenesis and assembly;8.12825694638807e-11!GO:0006464;protein modification process;8.18356582300224e-11!GO:0016655;oxidoreductase activity, acting on NADH or NADPH, quinone or similar compound as acceptor;9.62992174539441e-11!GO:0005843;cytosolic small ribosomal subunit (sensu Eukaryota);9.62992174539441e-11!GO:0006399;tRNA metabolic process;1.08493582369944e-10!GO:0043038;amino acid activation;1.15059654043296e-10!GO:0006418;tRNA aminoacylation for protein translation;1.15059654043296e-10!GO:0043039;tRNA aminoacylation;1.15059654043296e-10!GO:0006461;protein complex assembly;1.25201973210099e-10!GO:0043687;post-translational protein modification;1.36435321039055e-10!GO:0050789;regulation of biological process;1.45861123293702e-10!GO:0008565;protein transporter activity;2.25204109840466e-10!GO:0005643;nuclear pore;3.36592575266739e-10!GO:0005746;mitochondrial respiratory chain;4.50217937324361e-10!GO:0006366;transcription from RNA polymerase II promoter;4.60626680072195e-10!GO:0005842;cytosolic large ribosomal subunit (sensu Eukaryota);6.47154090535013e-10!GO:0016879;ligase activity, forming carbon-nitrogen bonds;7.02473983872156e-10!GO:0008639;small protein conjugating enzyme activity;1.57299527301282e-09!GO:0004842;ubiquitin-protein ligase activity;1.90595668049207e-09!GO:0050136;NADH dehydrogenase (quinone) activity;2.21049508343329e-09!GO:0003954;NADH dehydrogenase activity;2.21049508343329e-09!GO:0008137;NADH dehydrogenase (ubiquinone) activity;2.21049508343329e-09!GO:0019787;small conjugating protein ligase activity;2.37656045499878e-09!GO:0048523;negative regulation of cellular process;2.656972366324e-09!GO:0006403;RNA localization;2.79853286610482e-09!GO:0050657;nucleic acid transport;4.58442812176536e-09!GO:0051236;establishment of RNA localization;4.58442812176536e-09!GO:0050658;RNA transport;4.58442812176536e-09!GO:0009259;ribonucleotide metabolic process;5.03081940364348e-09!GO:0006732;coenzyme metabolic process;5.18282236165492e-09!GO:0007010;cytoskeleton organization and biogenesis;6.84725830617412e-09!GO:0016568;chromatin modification;7.63048790801583e-09!GO:0006413;translational initiation;7.67191745709196e-09!GO:0006446;regulation of translational initiation;8.55301827288004e-09!GO:0006888;ER to Golgi vesicle-mediated transport;9.01815123092779e-09!GO:0043566;structure-specific DNA binding;9.30350413464044e-09!GO:0030120;vesicle coat;9.80832312245031e-09!GO:0030662;coated vesicle membrane;9.80832312245031e-09!GO:0016651;oxidoreductase activity, acting on NADH or NADPH;1.21056342301733e-08!GO:0046930;pore complex;1.25131080326656e-08!GO:0006163;purine nucleotide metabolic process;1.55060378607186e-08!GO:0048475;coated membrane;1.81455362611313e-08!GO:0030117;membrane coat;1.81455362611313e-08!GO:0009150;purine ribonucleotide metabolic process;3.02357752748888e-08!GO:0016881;acid-amino acid ligase activity;3.1945562193892e-08!GO:0031323;regulation of cellular metabolic process;3.51402105794274e-08!GO:0017038;protein import;4.01505167432069e-08!GO:0042775;organelle ATP synthesis coupled electron transport;4.11869375212389e-08!GO:0042773;ATP synthesis coupled electron transport;4.11869375212389e-08!GO:0006164;purine nucleotide biosynthetic process;4.37537149610914e-08!GO:0005813;centrosome;4.37537149610914e-08!GO:0009060;aerobic respiration;4.38741225363701e-08!GO:0009260;ribonucleotide biosynthetic process;4.70880772033582e-08!GO:0030964;NADH dehydrogenase complex (quinone);4.71316874862359e-08!GO:0045271;respiratory chain complex I;4.71316874862359e-08!GO:0005747;mitochondrial respiratory chain complex I;4.71316874862359e-08!GO:0045333;cellular respiration;5.61077357969778e-08!GO:0042175;nuclear envelope-endoplasmic reticulum network;5.66447385029321e-08!GO:0065004;protein-DNA complex assembly;7.52786476828221e-08!GO:0005815;microtubule organizing center;7.55206647367716e-08!GO:0009152;purine ribonucleotide biosynthetic process;8.04912771111642e-08!GO:0006333;chromatin assembly or disassembly;8.3535369361776e-08!GO:0006350;transcription;9.63011540835565e-08!GO:0005819;spindle;1.02703359467837e-07!GO:0006120;mitochondrial electron transport, NADH to ubiquinone;1.05621777977229e-07!GO:0003697;single-stranded DNA binding;1.12462279589488e-07!GO:0051028;mRNA transport;1.49802242535211e-07!GO:0048519;negative regulation of biological process;1.55714799406626e-07!GO:0030036;actin cytoskeleton organization and biogenesis;1.61849423881964e-07!GO:0016787;hydrolase activity;1.70666329658745e-07!GO:0005761;mitochondrial ribosome;1.92619743938436e-07!GO:0000313;organellar ribosome;1.92619743938436e-07!GO:0031324;negative regulation of cellular metabolic process;1.98733628960491e-07!GO:0009056;catabolic process;2.01859951325057e-07!GO:0065002;intracellular protein transport across a membrane;2.13965875492787e-07!GO:0005789;endoplasmic reticulum membrane;2.150442899336e-07!GO:0016564;transcription repressor activity;2.35895296197487e-07!GO:0046961;hydrogen ion transporting ATPase activity, rotational mechanism;2.65270140549239e-07!GO:0006099;tricarboxylic acid cycle;2.69336587027626e-07!GO:0046356;acetyl-CoA catabolic process;2.69336587027626e-07!GO:0003724;RNA helicase activity;3.31694042902017e-07!GO:0046933;hydrogen ion transporting ATP synthase activity, rotational mechanism;3.31796604756271e-07!GO:0012501;programmed cell death;3.70994844504919e-07!GO:0005768;endosome;3.73469865674795e-07!GO:0000785;chromatin;3.81371631654457e-07!GO:0005667;transcription factor complex;4.28412754918312e-07!GO:0051187;cofactor catabolic process;4.30643921310198e-07!GO:0009109;coenzyme catabolic process;4.68697340327921e-07!GO:0009055;electron carrier activity;4.88177843370329e-07!GO:0005788;endoplasmic reticulum lumen;5.10396334613779e-07!GO:0006915;apoptosis;5.82624930887684e-07!GO:0019899;enzyme binding;5.82624930887684e-07!GO:0055086;nucleobase, nucleoside and nucleotide metabolic process;6.93796471659032e-07!GO:0019219;regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;7.58893427091421e-07!GO:0006084;acetyl-CoA metabolic process;7.71469560139056e-07!GO:0065007;biological regulation;8.50798533909741e-07!GO:0009199;ribonucleoside triphosphate metabolic process;8.52283612074673e-07!GO:0005798;Golgi-associated vesicle;9.42345416807235e-07!GO:0051170;nuclear import;9.54870454016539e-07!GO:0006364;rRNA processing;1.01577739415288e-06!GO:0015986;ATP synthesis coupled proton transport;1.02389143971957e-06!GO:0015985;energy coupled proton transport, down electrochemical gradient;1.02389143971957e-06!GO:0008219;cell death;1.04989257104609e-06!GO:0016265;death;1.04989257104609e-06!GO:0010468;regulation of gene expression;1.11878496353745e-06!GO:0003714;transcription corepressor activity;1.12442129487017e-06!GO:0006606;protein import into nucleus;1.24284800925545e-06!GO:0009141;nucleoside triphosphate metabolic process;1.25453716803049e-06!GO:0009892;negative regulation of metabolic process;1.38167747508607e-06!GO:0003924;GTPase activity;1.42524306595801e-06!GO:0045934;negative regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;1.53741619541432e-06!GO:0009205;purine ribonucleoside triphosphate metabolic process;1.58240871649749e-06!GO:0009144;purine nucleoside triphosphate metabolic process;1.58240871649749e-06!GO:0003713;transcription coactivator activity;1.87352764709425e-06!GO:0000151;ubiquitin ligase complex;1.95604648162803e-06!GO:0045786;negative regulation of progression through cell cycle;2.07895409055289e-06!GO:0016072;rRNA metabolic process;2.11895343986578e-06!GO:0030029;actin filament-based process;2.40802996546103e-06!GO:0046034;ATP metabolic process;2.50197249478991e-06!GO:0008092;cytoskeletal protein binding;2.60392023537185e-06!GO:0016563;transcription activator activity;2.76315622067691e-06!GO:0015931;nucleobase, nucleoside, nucleotide and nucleic acid transport;2.83747892781145e-06!GO:0006261;DNA-dependent DNA replication;3.02297845056227e-06!GO:0016591;DNA-directed RNA polymerase II, holoenzyme;3.52124099280561e-06!GO:0009142;nucleoside triphosphate biosynthetic process;3.98459931470371e-06!GO:0009201;ribonucleoside triphosphate biosynthetic process;3.98459931470371e-06!GO:0016363;nuclear matrix;4.10005695104315e-06!GO:0031252;leading edge;4.4175548951897e-06!GO:0006793;phosphorus metabolic process;4.56162563992641e-06!GO:0006796;phosphate metabolic process;4.56162563992641e-06!GO:0030532;small nuclear ribonucleoprotein complex;5.23420875443462e-06!GO:0032774;RNA biosynthetic process;5.76168677041917e-06!GO:0043623;cellular protein complex assembly;6.47334760330165e-06!GO:0031988;membrane-bound vesicle;6.50483517184809e-06!GO:0016023;cytoplasmic membrane-bound vesicle;7.36409701466305e-06!GO:0006351;transcription, DNA-dependent;7.53499375223058e-06!GO:0009206;purine ribonucleoside triphosphate biosynthetic process;7.56062605436679e-06!GO:0009145;purine nucleoside triphosphate biosynthetic process;7.56062605436679e-06!GO:0016310;phosphorylation;7.61420355747825e-06!GO:0051246;regulation of protein metabolic process;7.89816847275903e-06!GO:0051188;cofactor biosynthetic process;8.01994513844732e-06!GO:0016481;negative regulation of transcription;8.42751902806147e-06!GO:0016772;transferase activity, transferring phosphorus-containing groups;8.42751902806147e-06!GO:0009117;nucleotide metabolic process;8.48550433298554e-06!GO:0031202;RNA splicing factor activity, transesterification mechanism;8.97540582296665e-06!GO:0019829;cation-transporting ATPase activity;9.56961479699241e-06!GO:0044440;endosomal part;1.00670346428e-05!GO:0010008;endosome membrane;1.00670346428e-05!GO:0006754;ATP biosynthetic process;1.03213237737314e-05!GO:0006753;nucleoside phosphate metabolic process;1.03213237737314e-05!GO:0006357;regulation of transcription from RNA polymerase II promoter;1.06914639419252e-05!GO:0005839;proteasome core complex (sensu Eukaryota);1.18182092721313e-05!GO:0003690;double-stranded DNA binding;1.51290609394657e-05!GO:0007051;spindle organization and biogenesis;1.51609420068254e-05!GO:0016469;proton-transporting two-sector ATPase complex;1.52549953620543e-05!GO:0016740;transferase activity;1.58992830934424e-05!GO:0051789;response to protein stimulus;1.88068724778636e-05!GO:0006986;response to unfolded protein;1.88068724778636e-05!GO:0032446;protein modification by small protein conjugation;1.89566584457152e-05!GO:0045449;regulation of transcription;1.97600813297981e-05!GO:0003677;DNA binding;2.01596943664708e-05!GO:0000245;spliceosome assembly;2.05837166442271e-05!GO:0051325;interphase;2.09834622897492e-05!GO:0005874;microtubule;2.10256454020962e-05!GO:0008094;DNA-dependent ATPase activity;2.24142956758676e-05!GO:0031982;vesicle;2.42645992444062e-05!GO:0006752;group transfer coenzyme metabolic process;2.53376581490813e-05!GO:0051329;interphase of mitotic cell cycle;2.62156570944397e-05!GO:0006334;nucleosome assembly;2.73844708734626e-05!GO:0031410;cytoplasmic vesicle;2.80798339660919e-05!GO:0006613;cotranslational protein targeting to membrane;2.81606024241015e-05!GO:0005769;early endosome;3.06442596831077e-05!GO:0031497;chromatin assembly;3.33901382042412e-05!GO:0016567;protein ubiquitination;3.50784060818466e-05!GO:0008186;RNA-dependent ATPase activity;3.70412030572618e-05!GO:0043123;positive regulation of I-kappaB kinase/NF-kappaB cascade;3.79576166387279e-05!GO:0004298;threonine endopeptidase activity;4.22097773989514e-05!GO:0051168;nuclear export;5.18589258531748e-05!GO:0008270;zinc ion binding;5.68204795183716e-05!GO:0000075;cell cycle checkpoint;5.79578149006277e-05!GO:0030867;rough endoplasmic reticulum membrane;6.00712807063611e-05!GO:0045259;proton-transporting ATP synthase complex;6.27159639176505e-05!GO:0015078;hydrogen ion transmembrane transporter activity;6.29056996764929e-05!GO:0044431;Golgi apparatus part;6.90214897738095e-05!GO:0016853;isomerase activity;6.96021395691152e-05!GO:0000775;chromosome, pericentric region;8.54756726575668e-05!GO:0015980;energy derivation by oxidation of organic compounds;9.26381471091269e-05!GO:0051427;hormone receptor binding;9.42974752547413e-05!GO:0006916;anti-apoptosis;0.000103794905692891!GO:0030663;COPI coated vesicle membrane;0.00011005659206168!GO:0030126;COPI vesicle coat;0.00011005659206168!GO:0043122;regulation of I-kappaB kinase/NF-kappaB cascade;0.000114506407543084!GO:0043067;regulation of programmed cell death;0.000116915008088995!GO:0042981;regulation of apoptosis;0.000116915008088995!GO:0004004;ATP-dependent RNA helicase activity;0.000119128016374823!GO:0008361;regulation of cell size;0.000119571985673945!GO:0003678;DNA helicase activity;0.000122761302737502!GO:0016049;cell growth;0.000135000797552715!GO:0016779;nucleotidyltransferase activity;0.000142734026680767!GO:0006355;regulation of transcription, DNA-dependent;0.000145631043077461!GO:0006310;DNA recombination;0.000154298505997665!GO:0043069;negative regulation of programmed cell death;0.000160780058185812!GO:0030133;transport vesicle;0.000161123290382467!GO:0009108;coenzyme biosynthetic process;0.000165340518258426!GO:0005905;coated pit;0.000167188898427856!GO:0016491;oxidoreductase activity;0.000172948039380592!GO:0046914;transition metal ion binding;0.000173243561487099!GO:0003684;damaged DNA binding;0.000174931179512142!GO:0000059;protein import into nucleus, docking;0.000178134861933032!GO:0035257;nuclear hormone receptor binding;0.000179319257060765!GO:0003755;peptidyl-prolyl cis-trans isomerase activity;0.000188214192237191!GO:0003729;mRNA binding;0.000215543176753095!GO:0006891;intra-Golgi vesicle-mediated transport;0.000234441745187299!GO:0004674;protein serine/threonine kinase activity;0.000240650013063247!GO:0008047;enzyme activator activity;0.000245707812920901!GO:0043066;negative regulation of apoptosis;0.000246497780851885!GO:0016859;cis-trans isomerase activity;0.000253153039951783!GO:0005770;late endosome;0.000258036258548901!GO:0030137;COPI-coated vesicle;0.000355778290058002!GO:0005856;cytoskeleton;0.000364652494996026!GO:0006612;protein targeting to membrane;0.000382075204477332!GO:0006414;translational elongation;0.000460991715556529!GO:0030134;ER to Golgi transport vesicle;0.000463000930965654!GO:0033116;ER-Golgi intermediate compartment membrane;0.000465448977957786!GO:0005773;vacuole;0.000487145228246158!GO:0019843;rRNA binding;0.000492425773161908!GO:0030530;heterogeneous nuclear ribonucleoprotein complex;0.000498437355376462!GO:0004576;oligosaccharyl transferase activity;0.000506851738273356!GO:0003682;chromatin binding;0.000538990557152593!GO:0005048;signal sequence binding;0.000538990557152593!GO:0005525;GTP binding;0.000538990557152593!GO:0051252;regulation of RNA metabolic process;0.000543667439343307!GO:0030127;COPII vesicle coat;0.000601139040400006!GO:0012507;ER to Golgi transport vesicle membrane;0.000601139040400006!GO:0048471;perinuclear region of cytoplasm;0.000621909165200817!GO:0008250;oligosaccharyl transferase complex;0.00063036278572751!GO:0005885;Arp2/3 protein complex;0.000647118063291737!GO:0005657;replication fork;0.000692004717625882!GO:0005791;rough endoplasmic reticulum;0.000695925161153728!GO:0004579;dolichyl-diphosphooligosaccharide-protein glycotransferase activity;0.000723775579719601!GO:0007052;mitotic spindle organization and biogenesis;0.000742666289271675!GO:0033178;proton-transporting two-sector ATPase complex, catalytic domain;0.000751570632577996!GO:0006302;double-strand break repair;0.00084071198340379!GO:0007249;I-kappaB kinase/NF-kappaB cascade;0.000889024716486327!GO:0001558;regulation of cell growth;0.00093482601752357!GO:0004177;aminopeptidase activity;0.000950809220896242!GO:0000776;kinetochore;0.000987636067983767!GO:0015077;monovalent inorganic cation transmembrane transporter activity;0.00102215054952315!GO:0043021;ribonucleoprotein binding;0.00103744126293012!GO:0031124;mRNA 3'-end processing;0.00116000677384328!GO:0006402;mRNA catabolic process;0.001180292728682!GO:0051052;regulation of DNA metabolic process;0.00127253936623082!GO:0016197;endosome transport;0.00131682607292279!GO:0006289;nucleotide-excision repair;0.00134216913633441!GO:0045261;proton-transporting ATP synthase complex, catalytic core F(1);0.00152699833790097!GO:0030658;transport vesicle membrane;0.00156982671813191!GO:0051920;peroxiredoxin activity;0.00164290799760862!GO:0007050;cell cycle arrest;0.00166179676180794!GO:0045454;cell redox homeostasis;0.00167486160827451!GO:0000922;spindle pole;0.00173328418624531!GO:0015631;tubulin binding;0.00174654977454389!GO:0008022;protein C-terminus binding;0.00184594359872529!GO:0043284;biopolymer biosynthetic process;0.00191607950775752!GO:0032561;guanyl ribonucleotide binding;0.00202124081354295!GO:0019001;guanyl nucleotide binding;0.00202124081354295!GO:0031968;organelle outer membrane;0.00204072175795322!GO:0007017;microtubule-based process;0.00204232612950786!GO:0045892;negative regulation of transcription, DNA-dependent;0.00209468511561759!GO:0003779;actin binding;0.00210749271636793!GO:0006892;post-Golgi vesicle-mediated transport;0.00220645767166844!GO:0005096;GTPase activator activity;0.00222955204690851!GO:0030521;androgen receptor signaling pathway;0.00223599225135196!GO:0000139;Golgi membrane;0.00233945175805795!GO:0008654;phospholipid biosynthetic process;0.00238215061465409!GO:0019867;outer membrane;0.00253417072180502!GO:0030132;clathrin coat of coated pit;0.0026185251644302!GO:0000323;lytic vacuole;0.00268753856168926!GO:0005764;lysosome;0.00268753856168926!GO:0042625;ATPase activity, coupled to transmembrane movement of ions;0.0026936475986826!GO:0005838;proteasome regulatory particle (sensu Eukaryota);0.00270887161543189!GO:0009165;nucleotide biosynthetic process;0.00280131544871323!GO:0005852;eukaryotic translation initiation factor 3 complex;0.00280793934620748!GO:0005753;mitochondrial proton-transporting ATP synthase complex;0.00280793934620748!GO:0007093;mitotic cell cycle checkpoint;0.00282211305227528!GO:0006091;generation of precursor metabolites and energy;0.00290618703375873!GO:0044262;cellular carbohydrate metabolic process;0.00303051945575653!GO:0007005;mitochondrion organization and biogenesis;0.00306890755762176!GO:0030118;clathrin coat;0.00312042518125402!GO:0016862;intramolecular oxidoreductase activity, interconverting keto- and enol-groups;0.00326607975908766!GO:0005876;spindle microtubule;0.00374507480025233!GO:0016281;eukaryotic translation initiation factor 4F complex;0.00378531654637685!GO:0048500;signal recognition particle;0.00381268779176866!GO:0030027;lamellipodium;0.00403173957741475!GO:0005762;mitochondrial large ribosomal subunit;0.00413119261588588!GO:0000315;organellar large ribosomal subunit;0.00413119261588588!GO:0045045;secretory pathway;0.00413119261588588!GO:0046483;heterocycle metabolic process;0.00420038956446854!GO:0044452;nucleolar part;0.00426843890868076!GO:0007088;regulation of mitosis;0.00431954634787949!GO:0000226;microtubule cytoskeleton organization and biogenesis;0.00436224901465211!GO:0017166;vinculin binding;0.00452998934953128!GO:0004527;exonuclease activity;0.00460924241026726!GO:0008139;nuclear localization sequence binding;0.00462008750042444!GO:0000049;tRNA binding;0.00468982825283479!GO:0001726;ruffle;0.00470528430111796!GO:0003711;transcription elongation regulator activity;0.00473863331031535!GO:0030660;Golgi-associated vesicle membrane;0.00475670364152893!GO:0031123;RNA 3'-end processing;0.0048034117709856!GO:0000079;regulation of cyclin-dependent protein kinase activity;0.00489296043659048!GO:0018196;peptidyl-asparagine modification;0.00492876653144995!GO:0018279;protein amino acid N-linked glycosylation via asparagine;0.00492876653144995!GO:0031625;ubiquitin protein ligase binding;0.0050700181573955!GO:0007059;chromosome segregation;0.0052657719065746!GO:0007243;protein kinase cascade;0.00533764486351556!GO:0004003;ATP-dependent DNA helicase activity;0.00542985484180214!GO:0035258;steroid hormone receptor binding;0.00549701878494177!GO:0032508;DNA duplex unwinding;0.00556854247347308!GO:0032392;DNA geometric change;0.00556854247347308!GO:0006352;transcription initiation;0.00556854247347308!GO:0006401;RNA catabolic process;0.00564333362460918!GO:0006890;retrograde vesicle-mediated transport, Golgi to ER;0.00581764934879!GO:0051539;4 iron, 4 sulfur cluster binding;0.00583535583931721!GO:0051128;regulation of cellular component organization and biogenesis;0.00591185824551506!GO:0000910;cytokinesis;0.0059892607902175!GO:0019752;carboxylic acid metabolic process;0.00620314880047513!GO:0003899;DNA-directed RNA polymerase activity;0.00623738523077831!GO:0050662;coenzyme binding;0.00626219788608301!GO:0005684;U2-dependent spliceosome;0.00642095193964848!GO:0003746;translation elongation factor activity;0.00667755680579653!GO:0030518;steroid hormone receptor signaling pathway;0.00669689110860491!GO:0006405;RNA export from nucleus;0.00724798781920246!GO:0006520;amino acid metabolic process;0.00727543699966822!GO:0032200;telomere organization and biogenesis;0.0074629639063187!GO:0000723;telomere maintenance;0.0074629639063187!GO:0046489;phosphoinositide biosynthetic process;0.00758312969372441!GO:0016301;kinase activity;0.00766599316233515!GO:0065009;regulation of a molecular function;0.00767005918085768!GO:0006082;organic acid metabolic process;0.00774545508191308!GO:0005741;mitochondrial outer membrane;0.00782443064152977!GO:0031901;early endosome membrane;0.0080058584875827!GO:0042802;identical protein binding;0.00802974013096489!GO:0006607;NLS-bearing substrate import into nucleus;0.0080868026456072!GO:0000082;G1/S transition of mitotic cell cycle;0.00812210517041617!GO:0015405;P-P-bond-hydrolysis-driven transmembrane transporter activity;0.00829570376220926!GO:0015399;primary active transmembrane transporter activity;0.00829570376220926!GO:0009112;nucleobase metabolic process;0.00847272699828004!GO:0016679;oxidoreductase activity, acting on diphenols and related substances as donors;0.00882652986479894!GO:0016681;oxidoreductase activity, acting on diphenols and related substances as donors, cytochrome as acceptor;0.00882652986479894!GO:0008121;ubiquinol-cytochrome-c reductase activity;0.00882652986479894!GO:0048522;positive regulation of cellular process;0.00896825567861054!GO:0006378;mRNA polyadenylation;0.0089810907430039!GO:0006383;transcription from RNA polymerase III promoter;0.00930169837483881!GO:0006614;SRP-dependent cotranslational protein targeting to membrane;0.00969528806212842!GO:0045047;protein targeting to ER;0.00969528806212842!GO:0045935;positive regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;0.00985309960066847!GO:0008033;tRNA processing;0.010274939808619!GO:0045893;positive regulation of transcription, DNA-dependent;0.0106642488372779!GO:0006268;DNA unwinding during replication;0.0109596962950472!GO:0003756;protein disulfide isomerase activity;0.0114806624712413!GO:0016864;intramolecular oxidoreductase activity, transposing S-S bonds;0.0114806624712413!GO:0005786;signal recognition particle, endoplasmic reticulum targeting;0.0115018830355586!GO:0005637;nuclear inner membrane;0.0115034529925872!GO:0005869;dynactin complex;0.0117773975963367!GO:0000118;histone deacetylase complex;0.0117877472622743!GO:0005832;chaperonin-containing T-complex;0.0117877472622743!GO:0045941;positive regulation of transcription;0.0118130779476361!GO:0050681;androgen receptor binding;0.011879327433414!GO:0006338;chromatin remodeling;0.011931713839131!GO:0043488;regulation of mRNA stability;0.0122735545389939!GO:0043487;regulation of RNA stability;0.0122735545389939!GO:0051287;NAD binding;0.0127446798113674!GO:0008154;actin polymerization and/or depolymerization;0.0129591726864006!GO:0007030;Golgi organization and biogenesis;0.0129737610740605!GO:0008312;7S RNA binding;0.0130200950367764!GO:0051271;negative regulation of cell motility;0.01316335773304!GO:0031072;heat shock protein binding;0.0132933016641867!GO:0005862;muscle thin filament tropomyosin;0.013445907455868!GO:0030659;cytoplasmic vesicle membrane;0.0139760482771604!GO:0005875;microtubule associated complex;0.0144343190015718!GO:0016251;general RNA polymerase II transcription factor activity;0.0144936427005421!GO:0001527;microfibril;0.0146949548482221!GO:0016627;oxidoreductase activity, acting on the CH-CH group of donors;0.0149160516220321!GO:0016706;oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors;0.0149160516220321!GO:0000122;negative regulation of transcription from RNA polymerase II promoter;0.015129184034104!GO:0007265;Ras protein signal transduction;0.0151408085021864!GO:0000781;chromosome, telomeric region;0.0152511275431153!GO:0008168;methyltransferase activity;0.0154730603455234!GO:0051493;regulation of cytoskeleton organization and biogenesis;0.0154730603455234!GO:0033043;regulation of organelle organization and biogenesis;0.0154730603455234!GO:0007264;small GTPase mediated signal transduction;0.0165631600963214!GO:0016741;transferase activity, transferring one-carbon groups;0.0166683545103538!GO:0005938;cell cortex;0.0168964939902181!GO:0019798;procollagen-proline dioxygenase activity;0.0171492844606971!GO:0006275;regulation of DNA replication;0.0173784327406864!GO:0016765;transferase activity, transferring alkyl or aryl (other than methyl) groups;0.0174384844678514!GO:0030119;AP-type membrane coat adaptor complex;0.0174398791817396!GO:0005083;small GTPase regulator activity;0.0175157972551672!GO:0003702;RNA polymerase II transcription factor activity;0.018116507291914!GO:0033673;negative regulation of kinase activity;0.0181221339783316!GO:0006469;negative regulation of protein kinase activity;0.0181221339783316!GO:0046474;glycerophospholipid biosynthetic process;0.0189474267254135!GO:0000339;RNA cap binding;0.0192532074857341!GO:0000792;heterochromatin;0.0193928291844152!GO:0016584;nucleosome positioning;0.0194965100850715!GO:0030131;clathrin adaptor complex;0.0195609606114372!GO:0031543;peptidyl-proline dioxygenase activity;0.0200480319722295!GO:0006635;fatty acid beta-oxidation;0.0203007151018879!GO:0022408;negative regulation of cell-cell adhesion;0.0204938142838399!GO:0008234;cysteine-type peptidase activity;0.0208204234505037!GO:0006950;response to stress;0.0209926444890394!GO:0008180;signalosome;0.0212305979415374!GO:0051348;negative regulation of transferase activity;0.0213780902061005!GO:0048487;beta-tubulin binding;0.0215450228491573!GO:0030032;lamellipodium biogenesis;0.0218480564037736!GO:0006376;mRNA splice site selection;0.0222454887231563!GO:0000389;nuclear mRNA 3'-splice site recognition;0.0222454887231563!GO:0006007;glucose catabolic process;0.0223961824438267!GO:0048037;cofactor binding;0.0228895572742056!GO:0000314;organellar small ribosomal subunit;0.0231045417994194!GO:0005763;mitochondrial small ribosomal subunit;0.0231045417994194!GO:0006611;protein export from nucleus;0.0231045417994194!GO:0000786;nucleosome;0.0232198171154153!GO:0016044;membrane organization and biogenesis;0.0233178108063427!GO:0035267;NuA4 histone acetyltransferase complex;0.0236719335747215!GO:0031461;cullin-RING ubiquitin ligase complex;0.0239949839546257!GO:0051045;negative regulation of membrane protein ectodomain proteolysis;0.0241363878748806!GO:0051043;regulation of membrane protein ectodomain proteolysis;0.0241363878748806!GO:0016773;phosphotransferase activity, alcohol group as acceptor;0.0243256278020301!GO:0008064;regulation of actin polymerization and/or depolymerization;0.0243256278020301!GO:0043087;regulation of GTPase activity;0.0246793069130736!GO:0006354;RNA elongation;0.0251050765478703!GO:0006541;glutamine metabolic process;0.0251444362983406!GO:0000209;protein polyubiquitination;0.0251456534969638!GO:0006379;mRNA cleavage;0.0252876245779049!GO:0007004;telomere maintenance via telomerase;0.0257229931605372!GO:0005581;collagen;0.0259844285289904!GO:0030041;actin filament polymerization;0.0260887870295707!GO:0040029;regulation of gene expression, epigenetic;0.0267364173405052!GO:0031529;ruffle organization and biogenesis;0.0267364173405052!GO:0005099;Ras GTPase activator activity;0.0275298099180127!GO:0045792;negative regulation of cell size;0.0275776345928724!GO:0030522;intracellular receptor-mediated signaling pathway;0.0276687124630435!GO:0002763;positive regulation of myeloid leukocyte differentiation;0.0276687124630435!GO:0016408;C-acyltransferase activity;0.0277989104819661!GO:0030384;phosphoinositide metabolic process;0.0279976576514331!GO:0006284;base-excision repair;0.0290138040277388!GO:0031418;L-ascorbic acid binding;0.0291813642750147!GO:0030695;GTPase regulator activity;0.0294150354622516!GO:0044420;extracellular matrix part;0.0296956943559009!GO:0044433;cytoplasmic vesicle part;0.0300254139346652!GO:0040008;regulation of growth;0.0306682234985624!GO:0015992;proton transport;0.0307300129502036!GO:0006497;protein amino acid lipidation;0.0307300129502036!GO:0042626;ATPase activity, coupled to transmembrane movement of substances;0.0307300129502036!GO:0043492;ATPase activity, coupled to movement of substances;0.0307300129502036!GO:0006144;purine base metabolic process;0.0309172981981546!GO:0000096;sulfur amino acid metabolic process;0.0310580101091738!GO:0043022;ribosome binding;0.0311663304425965!GO:0001952;regulation of cell-matrix adhesion;0.031233705818016!GO:0030865;cortical cytoskeleton organization and biogenesis;0.0315639662888258!GO:0040013;negative regulation of locomotion;0.0315639662888258!GO:0051087;chaperone binding;0.031714896417642!GO:0030833;regulation of actin filament polymerization;0.0323097881036234!GO:0030308;negative regulation of cell growth;0.0323473551194214!GO:0000152;nuclear ubiquitin ligase complex;0.0323784035927792!GO:0031902;late endosome membrane;0.0327832303477878!GO:0043495;protein anchor;0.0333766126607682!GO:0004656;procollagen-proline 4-dioxygenase activity;0.0334677744033765!GO:0031545;peptidyl-proline 4-dioxygenase activity;0.0334677744033765!GO:0045263;proton-transporting ATP synthase complex, coupling factor F(o);0.0337511721684313!GO:0033177;proton-transporting two-sector ATPase complex, proton-transporting domain;0.0337511721684313!GO:0012506;vesicle membrane;0.0341118983471485!GO:0006818;hydrogen transport;0.0341567654339438!GO:0035035;histone acetyltransferase binding;0.0355491941385621!GO:0005062;hematopoietin/interferon-class (D200-domain) cytokine receptor signal transducer activity;0.0361560067920003!GO:0005595;collagen type XII;0.0361560067920003!GO:0009124;nucleoside monophosphate biosynthetic process;0.0374822452647!GO:0009123;nucleoside monophosphate metabolic process;0.0374822452647!GO:0006100;tricarboxylic acid cycle intermediate metabolic process;0.0384660012453092!GO:0016820;hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances;0.0384660012453092!GO:0008475;procollagen-lysine 5-dioxygenase activity;0.038707987583091!GO:0030125;clathrin vesicle coat;0.038828801600847!GO:0030665;clathrin coated vesicle membrane;0.038828801600847!GO:0017015;regulation of transforming growth factor beta receptor signaling pathway;0.0393130671819553!GO:0000123;histone acetyltransferase complex;0.039334740255027!GO:0047485;protein N-terminus binding;0.0397871781194943!GO:0043631;RNA polyadenylation;0.0401186440761317!GO:0050790;regulation of catalytic activity;0.040949770978854!GO:0008652;amino acid biosynthetic process;0.0413446133315468!GO:0008017;microtubule binding;0.0417186187216802!GO:0005801;cis-Golgi network;0.0418749715371091!GO:0005680;anaphase-promoting complex;0.0419625518543475!GO:0001953;negative regulation of cell-matrix adhesion;0.0421582589686466!GO:0006778;porphyrin metabolic process;0.0425366529948822!GO:0033013;tetrapyrrole metabolic process;0.0425366529948822!GO:0004518;nuclease activity;0.042609169798914!GO:0007034;vacuolar transport;0.0426882191350897!GO:0008757;S-adenosylmethionine-dependent methyltransferase activity;0.0426882191350897!GO:0006509;membrane protein ectodomain proteolysis;0.0428847830408816!GO:0033619;membrane protein proteolysis;0.0428847830408816!GO:0016126;sterol biosynthetic process;0.0429775126560494!GO:0000184;mRNA catabolic process, nonsense-mediated decay;0.0434333850015186!GO:0000228;nuclear chromosome;0.0438152673904073!GO:0003988;acetyl-CoA C-acyltransferase activity;0.0438256841893353!GO:0005675;holo TFIIH complex;0.0440603083804282!GO:0004437;inositol or phosphatidylinositol phosphatase activity;0.0441729783563403!GO:0005583;fibrillar collagen;0.0442874155891233!GO:0000287;magnesium ion binding;0.0453748108262322!GO:0016579;protein deubiquitination;0.0455662139194908!GO:0009161;ribonucleoside monophosphate metabolic process;0.0455662139194908!GO:0009156;ribonucleoside monophosphate biosynthetic process;0.0455662139194908!GO:0030880;RNA polymerase complex;0.0458035037973187!GO:0005784;translocon complex;0.0458925508389567!GO:0030336;negative regulation of cell migration;0.046038002247362!GO:0043189;H4/H2A histone acetyltransferase complex;0.0465280213902341!GO:0000307;cyclin-dependent protein kinase holoenzyme complex;0.0469874413443851!GO:0009127;purine nucleoside monophosphate biosynthetic process;0.0471004011269974!GO:0009167;purine ribonucleoside monophosphate metabolic process;0.0471004011269974!GO:0009126;purine nucleoside monophosphate metabolic process;0.0471004011269974!GO:0009168;purine ribonucleoside monophosphate biosynthetic process;0.0471004011269974!GO:0006368;RNA elongation from RNA polymerase II promoter;0.0472107831664299!GO:0006406;mRNA export from nucleus;0.0480660365661175!GO:0006740;NADPH regeneration;0.0482807992173946!GO:0006098;pentose-phosphate shunt;0.0482807992173946!GO:0032984;macromolecular complex disassembly;0.0490343514574492!GO:0009225;nucleotide-sugar metabolic process;0.0492855048753363!GO:0007041;lysosomal transport;0.0496032501662996!GO:0043433;negative regulation of transcription factor activity;0.049620446715621!GO:0043130;ubiquitin binding;0.049620446715621!GO:0032182;small conjugating protein binding;0.049620446715621!GO:0042585;germinal vesicle;0.0499874328796437 | |||
|sample_id=14326 | |sample_id=14326 | ||
|sample_note= | |sample_note= | ||
| Line 76: | Line 99: | ||
|sample_tissue=skin | |sample_tissue=skin | ||
|top_motifs=HBP1_HMGB_SSRP1_UBTF:2.35502431607;NKX3-1:1.9925040014;HIF1A:1.94656707998;ALX4:1.89628423387;XBP1:1.84545341271;NKX3-2:1.66593480388;GATA4:1.64599337219;SRF:1.56321229382;TOPORS:1.55588556089;TEAD1:1.530584385;KLF4:1.51508675712;MZF1:1.49281950222;GZF1:1.44595172798;NR3C1:1.44210721247;EN1,2:1.43553551646;PRDM1:1.37844894571;HOX{A5,B5}:1.36029033164;EVI1:1.34778702497;UFEwm:1.33884899257;ESR1:1.32811413257;HSF1,2:1.31231577022;AHR_ARNT_ARNT2:1.30683274548;STAT1,3:1.3041400044;GCM1,2:1.2560426208;ZNF384:1.17323849686;RXR{A,B,G}:1.16927186769;GFI1B:1.15556251917;ZNF238:1.12619592776;MYBL2:1.03859996097;HMGA1,2:0.975150804245;PAX8:0.97448978275;GFI1:0.967330294364;SOX17:0.95584796716;NKX2-1,4:0.918880679997;GTF2A1,2:0.880391882773;GTF2I:0.866072032246;NANOG{mouse}:0.86088772349;TEF:0.854176147249;EP300:0.841419794953;ELK1,4_GABP{A,B1}:0.780697791399;BPTF:0.778799553722;TFAP4:0.727131846093;ATF6:0.712857174937;NR1H4:0.705450201206;NFE2L1:0.688467838893;ZIC1..3:0.671942534724;GLI1..3:0.659633166429;RXRA_VDR{dimer}:0.656057666117;RREB1:0.649481268055;FOXL1:0.605113024615;NKX2-2,8:0.600337384474;TAL1_TCF{3,4,12}:0.581953996811;NFIX:0.581537599738;TFDP1:0.563887247275;ARID5B:0.554787619565;ZBTB16:0.52880667689;EBF1:0.517834617184;HMX1:0.516423851104;ZNF143:0.514185997281;YY1:0.508760920533;MAZ:0.504881909942;MYB:0.501707288837;TP53:0.499332886617;TLX1..3_NFIC{dimer}:0.492985754656;E2F1..5:0.491244132146;ZBTB6:0.483646782541;RFX1:0.482037583605;NRF1:0.472148523691;SPZ1:0.44798394209;MTE{core}:0.446853874767;POU3F1..4:0.438907732279;XCPE1{core}:0.426881954258;AIRE:0.423355197772;TFAP2{A,C}:0.419615241092;MAFB:0.409302739446;HLF:0.401858437722;FOXP1:0.380219299126;STAT5{A,B}:0.373712578314;IKZF1:0.37295673821;CDX1,2,4:0.367044639086;MED-1{core}:0.361498691288;PATZ1:0.346598266;FOX{I1,J2}:0.337449331541;FOXN1:0.323074061121;HOX{A4,D4}:0.318557803151;CREB1:0.316022729759;POU1F1:0.305294458159;CEBPA,B_DDIT3:0.282961083172;NFATC1..3:0.250965172777;PRRX1,2:0.248276424839;PAX2:0.244665699935;NFE2:0.230259744347;PPARG:0.226729662022;BACH2:0.222938768293;NFE2L2:0.200504929238;ATF4:0.199336872565;NFY{A,B,C}:0.194226112084;SP1:0.185470617873;FOS_FOS{B,L1}_JUN{B,D}:0.180944918185;ATF5_CREB3:0.170827607475;ZFP161:0.166858334948;PAX3,7:0.14458318836;CRX:0.133954725522;DMAP1_NCOR{1,2}_SMARC:0.0990191265702;ELF1,2,4:0.0922114799794;MEF2{A,B,C,D}:0.0817255890372;PAX5:0.0427991400323;HAND1,2:0.0427799414655;TBX4,5:0.0387787654335;POU5F1:0.0378625832721;MYFfamily:0.00908136591144;TFAP2B:0.00138105419931;TLX2:-0.000589182428062;TBP:-0.0216027578055;RUNX1..3:-0.0303839102891;IRF1,2:-0.0535130996387;PAX4:-0.0605341665815;FOSL2:-0.0661267540537;HIC1:-0.0849915555811;PAX1,9:-0.092686771565;ONECUT1,2:-0.105713647718;EGR1..3:-0.111191274277;POU2F1..3:-0.116105377746;ZNF148:-0.130702448208;RBPJ:-0.141699535619;HES1:-0.148176636026;AR:-0.158416065324;HOXA9_MEIS1:-0.165455122536;SOX5:-0.166645252528;RFX2..5_RFXANK_RFXAP:-0.17199222138;HOX{A6,A7,B6,B7}:-0.184159000626;SMAD1..7,9:-0.201698076912;CDC5L:-0.203338472245;FOX{D1,D2}:-0.206809831944;FOXD3:-0.213154272211;TFCP2:-0.227030940348;FOXO1,3,4:-0.231336024198;PDX1:-0.248024404566;LEF1_TCF7_TCF7L1,2:-0.259268272331;FOXP3:-0.266405243251;NKX2-3_NKX2-5:-0.266972529177;TGIF1:-0.271835250781;LHX3,4:-0.275036055253;ATF2:-0.276358540914;SOX2:-0.283447768064;ZNF423:-0.293003731656;ALX1:-0.302236973861;STAT2,4,6:-0.304651673844;FOXA2:-0.310025882975;PITX1..3:-0.324215380746;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:-0.327696024721;SPI1:-0.328292493578;HNF1A:-0.330958568748;DBP:-0.361020643771;ETS1,2:-0.387704636538;T:-0.389002042339;NR6A1:-0.428780312333;NHLH1,2:-0.431366184296;ADNP_IRX_SIX_ZHX:-0.44812095059;SREBF1,2:-0.449923716056;HNF4A_NR2F1,2:-0.452699211179;NKX6-1,2:-0.497353933333;NFKB1_REL_RELA:-0.536956804126;JUN:-0.549937204011;SOX{8,9,10}:-0.552090070811;IRF7:-0.561694283544;POU6F1:-0.565246456941;PBX1:-0.573867981636;SPIB:-0.594354672831;MTF1:-0.663022470932;RXR{A,B,G}_{NR1H2,PPAR}dimers:-0.668141303038;REST:-0.668540435395;FOXM1:-0.693665287732;OCT4_SOX2{dimer}:-0.768287606708;CUX2:-0.787696703853;bHLH_family:-0.805182951929;BREu{core}:-0.911512361616;GATA6:-0.957668122404;VSX1,2:-1.02130307977;FOXQ1:-1.02161958712;IKZF2:-1.02538016108;NFIL3:-1.09107055025;ZEB1:-1.13797101555;SNAI1..3:-1.20880205461;LMO2:-1.21582062788;ESRRA:-1.21688493018;NR5A1,2:-1.2261167828;FOX{F1,F2,J1}:-1.24173726343;PAX6:-1.27709341061;NANOG:-1.35414840008;RORA:-1.38718878171;MYOD1:-1.62757638117 | |top_motifs=HBP1_HMGB_SSRP1_UBTF:2.35502431607;NKX3-1:1.9925040014;HIF1A:1.94656707998;ALX4:1.89628423387;XBP1:1.84545341271;NKX3-2:1.66593480388;GATA4:1.64599337219;SRF:1.56321229382;TOPORS:1.55588556089;TEAD1:1.530584385;KLF4:1.51508675712;MZF1:1.49281950222;GZF1:1.44595172798;NR3C1:1.44210721247;EN1,2:1.43553551646;PRDM1:1.37844894571;HOX{A5,B5}:1.36029033164;EVI1:1.34778702497;UFEwm:1.33884899257;ESR1:1.32811413257;HSF1,2:1.31231577022;AHR_ARNT_ARNT2:1.30683274548;STAT1,3:1.3041400044;GCM1,2:1.2560426208;ZNF384:1.17323849686;RXR{A,B,G}:1.16927186769;GFI1B:1.15556251917;ZNF238:1.12619592776;MYBL2:1.03859996097;HMGA1,2:0.975150804245;PAX8:0.97448978275;GFI1:0.967330294364;SOX17:0.95584796716;NKX2-1,4:0.918880679997;GTF2A1,2:0.880391882773;GTF2I:0.866072032246;NANOG{mouse}:0.86088772349;TEF:0.854176147249;EP300:0.841419794953;ELK1,4_GABP{A,B1}:0.780697791399;BPTF:0.778799553722;TFAP4:0.727131846093;ATF6:0.712857174937;NR1H4:0.705450201206;NFE2L1:0.688467838893;ZIC1..3:0.671942534724;GLI1..3:0.659633166429;RXRA_VDR{dimer}:0.656057666117;RREB1:0.649481268055;FOXL1:0.605113024615;NKX2-2,8:0.600337384474;TAL1_TCF{3,4,12}:0.581953996811;NFIX:0.581537599738;TFDP1:0.563887247275;ARID5B:0.554787619565;ZBTB16:0.52880667689;EBF1:0.517834617184;HMX1:0.516423851104;ZNF143:0.514185997281;YY1:0.508760920533;MAZ:0.504881909942;MYB:0.501707288837;TP53:0.499332886617;TLX1..3_NFIC{dimer}:0.492985754656;E2F1..5:0.491244132146;ZBTB6:0.483646782541;RFX1:0.482037583605;NRF1:0.472148523691;SPZ1:0.44798394209;MTE{core}:0.446853874767;POU3F1..4:0.438907732279;XCPE1{core}:0.426881954258;AIRE:0.423355197772;TFAP2{A,C}:0.419615241092;MAFB:0.409302739446;HLF:0.401858437722;FOXP1:0.380219299126;STAT5{A,B}:0.373712578314;IKZF1:0.37295673821;CDX1,2,4:0.367044639086;MED-1{core}:0.361498691288;PATZ1:0.346598266;FOX{I1,J2}:0.337449331541;FOXN1:0.323074061121;HOX{A4,D4}:0.318557803151;CREB1:0.316022729759;POU1F1:0.305294458159;CEBPA,B_DDIT3:0.282961083172;NFATC1..3:0.250965172777;PRRX1,2:0.248276424839;PAX2:0.244665699935;NFE2:0.230259744347;PPARG:0.226729662022;BACH2:0.222938768293;NFE2L2:0.200504929238;ATF4:0.199336872565;NFY{A,B,C}:0.194226112084;SP1:0.185470617873;FOS_FOS{B,L1}_JUN{B,D}:0.180944918185;ATF5_CREB3:0.170827607475;ZFP161:0.166858334948;PAX3,7:0.14458318836;CRX:0.133954725522;DMAP1_NCOR{1,2}_SMARC:0.0990191265702;ELF1,2,4:0.0922114799794;MEF2{A,B,C,D}:0.0817255890372;PAX5:0.0427991400323;HAND1,2:0.0427799414655;TBX4,5:0.0387787654335;POU5F1:0.0378625832721;MYFfamily:0.00908136591144;TFAP2B:0.00138105419931;TLX2:-0.000589182428062;TBP:-0.0216027578055;RUNX1..3:-0.0303839102891;IRF1,2:-0.0535130996387;PAX4:-0.0605341665815;FOSL2:-0.0661267540537;HIC1:-0.0849915555811;PAX1,9:-0.092686771565;ONECUT1,2:-0.105713647718;EGR1..3:-0.111191274277;POU2F1..3:-0.116105377746;ZNF148:-0.130702448208;RBPJ:-0.141699535619;HES1:-0.148176636026;AR:-0.158416065324;HOXA9_MEIS1:-0.165455122536;SOX5:-0.166645252528;RFX2..5_RFXANK_RFXAP:-0.17199222138;HOX{A6,A7,B6,B7}:-0.184159000626;SMAD1..7,9:-0.201698076912;CDC5L:-0.203338472245;FOX{D1,D2}:-0.206809831944;FOXD3:-0.213154272211;TFCP2:-0.227030940348;FOXO1,3,4:-0.231336024198;PDX1:-0.248024404566;LEF1_TCF7_TCF7L1,2:-0.259268272331;FOXP3:-0.266405243251;NKX2-3_NKX2-5:-0.266972529177;TGIF1:-0.271835250781;LHX3,4:-0.275036055253;ATF2:-0.276358540914;SOX2:-0.283447768064;ZNF423:-0.293003731656;ALX1:-0.302236973861;STAT2,4,6:-0.304651673844;FOXA2:-0.310025882975;PITX1..3:-0.324215380746;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:-0.327696024721;SPI1:-0.328292493578;HNF1A:-0.330958568748;DBP:-0.361020643771;ETS1,2:-0.387704636538;T:-0.389002042339;NR6A1:-0.428780312333;NHLH1,2:-0.431366184296;ADNP_IRX_SIX_ZHX:-0.44812095059;SREBF1,2:-0.449923716056;HNF4A_NR2F1,2:-0.452699211179;NKX6-1,2:-0.497353933333;NFKB1_REL_RELA:-0.536956804126;JUN:-0.549937204011;SOX{8,9,10}:-0.552090070811;IRF7:-0.561694283544;POU6F1:-0.565246456941;PBX1:-0.573867981636;SPIB:-0.594354672831;MTF1:-0.663022470932;RXR{A,B,G}_{NR1H2,PPAR}dimers:-0.668141303038;REST:-0.668540435395;FOXM1:-0.693665287732;OCT4_SOX2{dimer}:-0.768287606708;CUX2:-0.787696703853;bHLH_family:-0.805182951929;BREu{core}:-0.911512361616;GATA6:-0.957668122404;VSX1,2:-1.02130307977;FOXQ1:-1.02161958712;IKZF2:-1.02538016108;NFIL3:-1.09107055025;ZEB1:-1.13797101555;SNAI1..3:-1.20880205461;LMO2:-1.21582062788;ESRRA:-1.21688493018;NR5A1,2:-1.2261167828;FOX{F1,F2,J1}:-1.24173726343;PAX6:-1.27709341061;NANOG:-1.35414840008;RORA:-1.38718878171;MYOD1:-1.62757638117 | ||
|xref= | |||
|zenbu_report=https://fantom.gsc.riken.jp/zenbu/reports/#miRNA_expression_atlas_human;search_select_hide=table111:FF:14326-155E6;search_select_hide=table117:FF:14326-155E6 | |||
}} | }} | ||
Latest revision as of 19:06, 4 June 2020
| Name: | Fibroblast - skin spinal muscular atrophy, donor1 (nuclear fraction) |
|---|---|
| Species: | Human (Homo sapiens) |
| Library ID: | CNhs12404 |
| Sample type: | fractionations and perturbations |
| Genomic View: | UCSC |
| RefEX: | Specific genes |
| CAGEd-oPOSSUM: | link |
| ZENBU report : | link |
| Additional information | ||||||||||||||||||||||||||||
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Sample information
RNA information
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| CAGE Accession numbers | ||||||||||||||||||||||||||||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
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| Download raw sequence, BAM & CTSS | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
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Relative expression to median (log10)
Transcription factors with enriched expression in this sampleRanked list of transcription factor promoter expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.
Co-expression clusters with enriched expression in this sampleRanked list of co-expression cluster expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed. <br>Analyst:NA <br><br>link to dataset.<br>data
Repeat families with enriched expression in this sample<b>Summary:</b>Ranked list of repeat family expression in this sample relative tothe median expression in the FANTOM5 collection is shown. Value is log10transformed.<br><b>Analyst:</b>NA<br><br>link to dataset.<br>data
TFBS(DNA)motifs over-represented in proximal region of promoters active in this sample
JASPAR motifs<b>Summary:</b>Association of JASPAR motif to the promoter expression in thissample. Pearson's correlation between the number of TFBSs estimated byusing the position-weight matrix for each promoter and its expression isexpressed as Z-score by taking the ones based on random position-weightmatrix, and the tail probability of the normal distribution correspondingto the Z-score is taken as the resulting P-value. Lower P-value indicatesmore (non-random) association of the motif to promoter expression<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data
library id: CNhs12404
FANTOM5 phase1 novel unique motifs<b>Summary:</b>Association of the 169 novel and unique motifs discovered in FANTOM5 phase1 in this sample. Among the de-novo motifs discovered by DMF, HOMER,ChIPMunk, and ScanAll, only novel motifs are selected after comparison with known motif sets, and their clustering based on MACRO-APE resulted in169 novel and unique motifs. Their association to the promoter expression is evaluated in the same way to the JASPAR motif above<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data
library id: CNhs12404
| Novel motif | Logo | P-value |
|---|---|---|
| 1 | 1 | 0.126 |
| 10 | 10 | 0.714 |
| 100 | 100 | 0.709 |
| 101 | 101 | 0.53 |
| 102 | 102 | 0.164 |
| 103 | 103 | 0.0885 |
| 104 | 104 | 0.519 |
| 105 | 105 | 0.5 |
| 106 | 106 | 0.00716 |
| 107 | 107 | 0.166 |
| 108 | 108 | 0.632 |
| 109 | 109 | 0.0874 |
| 11 | 11 | 0.141 |
| 110 | 110 | 0.865 |
| 111 | 111 | 0.0374 |
| 112 | 112 | 0.453 |
| 113 | 113 | 0.0235 |
| 114 | 114 | 0.526 |
| 115 | 115 | 0.387 |
| 116 | 116 | 0.945 |
| 117 | 117 | 0.834 |
| 118 | 118 | 0.796 |
| 119 | 119 | 0.29 |
| 12 | 12 | 0.826 |
| 120 | 120 | 0.497 |
| 121 | 121 | 0.786 |
| 122 | 122 | 0.0323 |
| 123 | 123 | 0.00968 |
| 124 | 124 | 0.0587 |
| 125 | 125 | 0.584 |
| 126 | 126 | 0.211 |
| 127 | 127 | 0.432 |
| 128 | 128 | 0.0251 |
| 129 | 129 | 0.274 |
| 13 | 13 | 0.611 |
| 130 | 130 | 0.729 |
| 131 | 131 | 0.335 |
| 132 | 132 | 0.784 |
| 133 | 133 | 0.912 |
| 134 | 134 | 0.793 |
| 135 | 135 | 0.766 |
| 136 | 136 | 0.15 |
| 137 | 137 | 0.527 |
| 138 | 138 | 0.566 |
| 139 | 139 | 0.103 |
| 14 | 14 | 0.602 |
| 140 | 140 | 0.652 |
| 141 | 141 | 0.403 |
| 142 | 142 | 0.813 |
| 143 | 143 | 0.0852 |
| 144 | 144 | 0.962 |
| 145 | 145 | 0.952 |
| 146 | 146 | 0.0688 |
| 147 | 147 | 0.229 |
| 148 | 148 | 0.0161 |
| 149 | 149 | 0.529 |
| 15 | 15 | 0.0256 |
| 150 | 150 | 0.753 |
| 151 | 151 | 0.047 |
| 152 | 152 | 0.31 |
| 153 | 153 | 0.962 |
| 154 | 154 | 0.555 |
| 155 | 155 | 0.0156 |
| 156 | 156 | 0.783 |
| 157 | 157 | 0.646 |
| 158 | 158 | 0.455 |
| 159 | 159 | 0.169 |
| 16 | 16 | 0.449 |
| 160 | 160 | 0.29 |
| 161 | 161 | 0.126 |
| 162 | 162 | 0.888 |
| 163 | 163 | 0.856 |
| 164 | 164 | 0.728 |
| 165 | 165 | 0.337 |
| 166 | 166 | 0.0412 |
| 167 | 167 | 0.508 |
| 168 | 168 | 0.801 |
| 169 | 169 | 0.502 |
| 17 | 17 | 0.68 |
| 18 | 18 | 0.8 |
| 19 | 19 | 0.914 |
| 2 | 2 | 0.525 |
| 20 | 20 | 0.875 |
| 21 | 21 | 0.24 |
| 22 | 22 | 0.731 |
| 23 | 23 | 0.797 |
| 24 | 24 | 0.335 |
| 25 | 25 | 0.153 |
| 26 | 26 | 0.909 |
| 27 | 27 | 0.269 |
| 28 | 28 | 0.746 |
| 29 | 29 | 0.815 |
| 3 | 3 | 0.563 |
| 30 | 30 | 0.69 |
| 31 | 31 | 0.466 |
| 32 | 32 | 5.79542e-4 |
| 33 | 33 | 0.569 |
| 34 | 34 | 0.609 |
| 35 | 35 | 0.656 |
| 36 | 36 | 0.0439 |
| 37 | 37 | 0.748 |
| 38 | 38 | 0.297 |
| 39 | 39 | 0.815 |
| 4 | 4 | 0.777 |
| 40 | 40 | 0.0209 |
| 41 | 41 | 0.207 |
| 42 | 42 | 0.337 |
| 43 | 43 | 0.235 |
| 44 | 44 | 0.271 |
| 45 | 45 | 0.226 |
| 46 | 46 | 0.352 |
| 47 | 47 | 0.159 |
| 48 | 48 | 0.358 |
| 49 | 49 | 0.142 |
| 5 | 5 | 0.552 |
| 50 | 50 | 0.776 |
| 51 | 51 | 0.414 |
| 52 | 52 | 0.409 |
| 53 | 53 | 0.31 |
| 54 | 54 | 0.394 |
| 55 | 55 | 0.765 |
| 56 | 56 | 0.337 |
| 57 | 57 | 0.61 |
| 58 | 58 | 0.14 |
| 59 | 59 | 0.258 |
| 6 | 6 | 0.811 |
| 60 | 60 | 0.0684 |
| 61 | 61 | 0.427 |
| 62 | 62 | 0.127 |
| 63 | 63 | 0.395 |
| 64 | 64 | 0.216 |
| 65 | 65 | 0.318 |
| 66 | 66 | 0.382 |
| 67 | 67 | 0.826 |
| 68 | 68 | 0.787 |
| 69 | 69 | 0.359 |
| 7 | 7 | 0.082 |
| 70 | 70 | 0.0196 |
| 71 | 71 | 0.625 |
| 72 | 72 | 0.409 |
| 73 | 73 | 0.53 |
| 74 | 74 | 0.0575 |
| 75 | 75 | 0.652 |
| 76 | 76 | 0.9 |
| 77 | 77 | 0.792 |
| 78 | 78 | 0.0803 |
| 79 | 79 | 0.0457 |
| 8 | 8 | 0.0611 |
| 80 | 80 | 0.216 |
| 81 | 81 | 0.438 |
| 82 | 82 | 0.428 |
| 83 | 83 | 0.0501 |
| 84 | 84 | 0.279 |
| 85 | 85 | 0.193 |
| 86 | 86 | 0.745 |
| 87 | 87 | 0.0895 |
| 88 | 88 | 0.605 |
| 89 | 89 | 0.567 |
| 9 | 9 | 0.694 |
| 90 | 90 | 0.192 |
| 91 | 91 | 0.917 |
| 92 | 92 | 0.419 |
| 93 | 93 | 0.442 |
| 94 | 94 | 0.214 |
| 95 | 95 | 0.379 |
| 96 | 96 | 0.977 |
| 97 | 97 | 0.839 |
| 98 | 98 | 0.035 |
| 99 | 99 | 0.212 |
de novo motifs identified by HOMER in promoters active in this sample<b>Summary:</b>The result of HOMER in this sample is shown.<br><b>Analyst:</b>NA <br>
library id: CNhs12404
FANTOM5 (FF) ontology
Direct parent terms
is_a relathionship
FF:0000670 human Fibroblast - skin spinal muscular atrophy, nuclear fraction sample
Ancestor terms (non development)<b>Summary:</b>Connected ontology terms with is_a, part_of or located_in relationship <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source data<br>data
CL: Cell type
0000000 (cell), 0000000 (cell)
0000003 (native cell)
0000548 (animal cell)
0002320 (connective tissue cell)
0002371 (somatic cell)
0000255 (eukaryotic cell)
0000057 (fibroblast)
0002620 (skin fibroblast)
UBERON: Anatomy
0000468 (multi-cellular organism)
0002097 (skin of body)
0002199 (integument)
0002384 (connective tissue)
0000479 (tissue)
0000062 (organ)
0000061 (anatomical structure)
0000465 (material anatomical entity)
0000467 (anatomical system)
0001062 (anatomical entity)
0000480 (anatomical group)
0003102 (surface structure)
0002416 (integumental system)
FF: FANTOM5
0000102 (sample by type)
0000210 (human sample)
0000002 (in vivo cell sample)
0000101 (sample by species)
0000057 (fibroblast sample)
0000250 (human fibroblast of skin sample)
0000001 (sample)
0000408 (cellular fractionation sample)
0000350 (experimentally modified sample)
0000251 (human fibroblast - skin spinal muscular atrophy sample)
0000406 (nuclear fraction sample)
0000670 (human Fibroblast - skin spinal muscular atrophy, nuclear fraction sample)
Ancestor terms (development)<b>Summary:</b>Connected ontology terms with develops_from, derives_from or preceded_by relationship <br><b>Analyst:</b> Hideya Kawaji <br><br>link to source data<br>data
CL:0000134 (mesenchymal cell)
