FF:14332-155F3: Difference between revisions

Latest revision as of 19:07, 4 June 2020

Name:	Fibroblast - Aortic Adventitial, donor2 (nuclear fraction)
Species:	Human (Homo sapiens)
Library ID:	CNhs12581
Sample type:	fractionations and perturbations
Genomic View:	UCSC
RefEX:	Specific genes
CAGEd-oPOSSUM:	link
ZENBU report :	link

Additional information

Sample information

strain	NA
tissue	aorta
dev stage	19 years old adult
sex	female
age	19
cell type	fibroblast
cell line	NA
company	Lonza
collaboration	FANTOM5 OSC CORE (contact: Al Forrest)
External link for information	[{{{sample_info_link}}} {{{sample_info_link}}}]

RNA information

lot number	NA
catalog number	N/A
sample type	total RNA
extraction protocol (Details)	OP-RNA-extraction-totalRNA-miRNeasy_Mini-v1.0

CAGE Accession numbers

Method		Sample accession id
CAGE		SAMD00005544

Library accession numbers

Library id		Method		Exp. accession id		Run accession id
CNhs12581		CAGE		DRX008033		DRR008905

Accession ID Hg19

Library id		BAM		CTSS
CNhs12581		DRZ000330		DRZ001715

Accession ID Hg38

Library id		BAM		CTSS
CNhs12581		DRZ011680		DRZ013065

Download raw sequence, BAM & CTSS

Hg19

Fasta	BAM	CTSS
download	download	donwload

Hg38

BAM	CTSS
download	donwload

RNA-Seq Accession numbers

Method		Sample accession id
sRNA-Seq		SAMD00005544

Library accession numbers

Library id		Method		Exp. accession id		Run accession id
SRhi10010.GTGGCC		sRNA-Seq		DRX036985		DRR041351

Accession ID Hg19

Library id		BAM		CTSS
SRhi10010.GTGGCC		DRZ006993

Relative expression to median (log10)

Transcription factors with enriched expression in this sampleRanked list of transcription factor promoter expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.

Co-expression clusters with enriched expression in this sampleRanked list of co-expression cluster expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed. Analyst:NA link to dataset. data

Coexpression cluster	score
C0-CD14-Eosinophils-Neutrophils-Basophils-CD34-immature-Peripheral	0
C1-testis-epididymis-embryonic-medulla-pituitary-trachea-caudate	0
C10-occipital-temporal-parietal-brain-duodenum-Neurons-Neural	0
C100-rhabdomyosarcoma-gastric-pineal-Wilms-cervical-mesodermal-endometrial	0
C101-small-cerebellum-maxillary-colon-parietal-epididymis-merkel	0
C102-neuroblastoma-testicular-pituitary-carcinosarcoma-rectum-acantholytic-iPS	0
C103-CD4-CD8-Natural-Peripheral-Whole-Neutrophils-Basophils	0
C104-Mast-Basophils-immature-CD14-CD34-eye-Natural	0
C105-heart-skeletal-occipital-hippocampus-acute-Sebocyte-penis	-0.0706
C106-Hep2-epitheloid-placenta-cervical-rectal-anaplastic-glassy	0
C107-Neutrophils-CD14-Eosinophils-Monocytederived-Whole-Peripheral-blood	0
C108-breast-hepatoblastoma-MCF7-parotid-salivary-submaxillary-prostate	0
C109-Reticulocytes-non-acute-Hodgkin-Burkitt-retinoblastoma-lymphoma	-0.25
C11-cerebellum-medulla-pons-parietal-occipital-middle-medial	0
C110-leukemia-chronic-Eosinophils-acute-Whole-CD34-Lymphatic	0
C111-medulla-lung-trachea-testis-caudate-epididymis-throat	0
C112-gastric-pancreas-temporal-duodenum-small-extraskeletal-adrenal	0
C113-thyroid-throat-lung-lymph-small-colon-trachea	0
C114-teratocarcinoma-medulloblastoma-carcinosarcoma-iPS-anaplastic-acute-neuroblastoma	0
C115-pituitary-Neural-caudate-putamen-amygdala-medulla-hippocampus	0
C116-myeloma-xeroderma-tonsil-CD19-spleen-lymph-trachea	0
C117-serous-clear-kidney-neuroectodermal-mesothelioma-endometrial-Intestinal	0
C118-cerebellum-parietal-occipital-medial-middle-frontal-insula	0
C119-CD4-CD8-Natural-Neutrophils-CD14-Peripheral-CD19	0.0223
C12-Mast-Basophils-immature-chorionic-mature-CD14-Eosinophils	0
C120-immature-salivary-tongue-skin-cervical-CD14-CD34	0
C121-NK-Natural-CD8-CD4-anaplastic-chronic-B	0
C122-chronic-Reticulocytes-skeletal-leukemia-acute-colon-Tracheal	0
C123-CD19-Natural-CD8-CD4-CD14-Peripheral-Basophils	0
C124-small-temporal-duodenum-colon-gall-signet-Hepatocyte	0
C125-mucinous-alveolar-mesothelioma-Smooth-lung-CD14-Nucleus	0
C126-gastrointestinal-argyrophil-smallcell-merkel-bile-insula-brain	0
C127-maxillary-small-hepatoblastoma-hepatocellular-alveolar-colon-argyrophil	0
C128-testicular-choriocarcinoma-H9-teratocarcinoma-pancreatic-iPS-HES3GFP	0
C129-liver-Hepatocyte-colon-duodenum-temporal-testicular-small	0
C13-Neutrophils-Eosinophils-CD14-Monocytederived-Whole-Peripheral-CD4	0
C130-iPS-HES3GFP-H9-teratocarcinoma-testicular-colon-Alveolar	0
C131-lung-trachea-Alveolar-thyroid-umbilical-throat-skin	0
C132-acute-small-Dendritic-Macrophage-CD14-Neutrophils-Monocytederived	0
C133-signet-gall-small-kidney-colon-ductal-adenocarcinoma	0
C134-skeletal-diaphragm-tongue-throat-Skeletal-skin-penis	0
C135-neuroblastoma-retinoblastoma-carcinoid-choriocarcinoma-testicular-acute-rectum	0
C136-Wilms-extraskeletal-anaplastic-rhabdomyosarcoma-cholangiocellular-nonsmall-neuroectodermal	0
C137-large-ductal-melanoma-cervical-Endothelial-Smooth-chronic	0
C138-diffuse-Burkitt-lymphangiectasia-lymphoma-acute-CD19-pineal	0
C139-astrocytoma-skin-salivary-gall-serous-Mallassezderived-renal	0
C14-Whole-blood-Reticulocytes-liver-Neutrophils-Eosinophils-spleen	0
C140-Renal-Endothelial-Hepatic-Lymphatic-heart-lung-spleen	0
C141-Hodgkin-acute-thymus-chronic-vein-CD4-B	0
C142-Preadipocyte-Fibroblast-hepatic-Ewing-Adipocyte-Olfactory-Hair	0.607
C143-Monocytederived-CD14-Macrophage-Dendritic-Basophils-CD14CD16-Osteoblast	0
C144-CD4-tonsil-NK-appendix-CD8-splenic-mycosis	0
C145-neuroblastoma-peripheral-neuroectodermal-neuroepithelioma-carcinoid-adult-extraskeletal	0
C146-lymphangiectasia-lymphoma-gall-lymph-tonsil-gastric-transitionalcell	0
C147-Neutrophils-Eosinophils-CD4-CD14-CD8-Natural-Peripheral	0.054
C148-kidney-small-epididymis-pancreas-serous-duodenum-temporal	0
C149-occipital-medial-brain-amygdala-parietal-cerebral-cerebellum	0
C15-anaplastic-small-skeletal-neuroblastoma-parietal-temporal-tongue	0
C150-merkel-carcinoid-nonsmall-gastrointestinal-argyrophil-pineal-small	0
C151-CD14-Natural-Basophils-CD8-Eosinophils-CD4-Mast	0.054
C152-peripheral-neuroectodermal-neuroepithelioma-neuroblastoma-testicular-carcinoid-lung	0
C153-rhabdomyosarcoma-liposarcoma-pancreatic-somatostatinoma-Reticulocytes-lymphoma-testicular	0
C154-adenocarcinoma-Mesenchymal-Cardiac-small-sacrococcigeal-Smooth-Prostate	0
C155-pituitary-placenta-nonsmall-cervical-smallcell-choriocarcinoma-epitheloid	0
C156-plasma-splenic-hereditary-B-large-xeroderma-b	0
C157-testicular-H9-testis-iPS-teratocarcinoma-colon-trachea	0
C158-adrenal-gastric-temporal-parietal-duodenum-caudate-putamen	0
C159-choriocarcinoma-pancreatic-placenta-chorionic-testicular-bronchioalveolar-seminal	0
C16-medial-amygdala-occipital-parietal-olfactory-putamen-brain	0
C160-medulla-Hepatocyte-retina-corpus-liver-pineal-cerebral	0
C161-mesothelioma-Mesothelial-acute-mesenchymal-extraskeletal-renal-placenta	0
C162-spinal-locus-medulla-substantia-thalamus-globus-diencephalon	0
C163-Skeletal-skeletal-Pericytes-Hepatic-rhabdomyosarcoma-throat-mesenchymal	0
C164-signet-corpus-optic-mucinous-substantia-salivary-choriocarcinoma	0
C165-epithelioid-Adipocyte-mesothelioma-myxofibrosarcoma-lung-gastric-Mesothelial	0
C166-Macrophage-Monocytederived-Dendritic-adipose-lymph-CD14-lung	0
C167-Basophils-Mast-Eosinophils-Neutrophils-Peripheral-Whole-CD4	0
C168-Mast-CD14-immature-Basophils-Eosinophils-CD34-Peripheral	0
C169-hereditary-adult-gall-lymphangiectasia-chronic-b-choriocarcinoma	0
C17-Mast-CD14-Monocytederived-Lymphatic-Smooth-mesenchymal-Macrophage	0
C170-epitheloid-cervical-Hep2-keratoacanthoma-adult-neuroblastoma-signet	0
C171-merkel-neuroblastoma-pineal-retinoblastoma-carcinoid-small-eye	0
C172-chorionic-skeletal-tongue-amniotic-liver-gastrointestinal-Pericytes	0
C173-Adipocyte-mature-skin-left-Hepatocyte-Osteoblast-adipose	0
C174-CD14-Neutrophils-Smooth-mesothelioma-embryonic-Monocytederived-Eosinophils	0
C175-Eosinophils-Neutrophils-CD4-Basophils-CD19-CD8-Natural	0.0227
C176-Eosinophils-Neutrophils-Mast-CD14-CD4-Basophils-CD19	0.136
C177-melanoma-Melanocyte-mesenchymal-retina-Mallassezderived-Gingival-squamous	0
C178-spleen-liver-Hepatocyte-b-lymph-vein-thymus	0
C179-CD19-Peripheral-lymphoma-blood-lymph-spleen-tonsil	0
C18-CD4-CD8-thymus-Whole-Peripheral-Natural-blood	0
C180-skeletal-heart-Hepatocyte-acute-occipital-hippocampus-middle	-0.392
C181-liposarcoma-somatostatinoma-neuroblastoma-mesothelioma-nonsmall-small-Alveolar	0
C182-renal-mature-mesothelioma-lung-Mammary-Adipocyte-acute	0
C183-acute-non-CD34-diffuse-CD133-myeloma-Burkitt	0
C184-somatostatinoma-smallcell-nonsmall-small-gastrointestinal-pineal-thyroid	0
C185-small-adrenal-gastric-Mesenchymal-acute-HES3GFP-testis	0
C186-squamous-papillotubular-large-Tracheal-oral-Small-epidermoid	0
C187-migratory-immature-Dendritic-CD19-CD14-Monocytederived-Macrophage	0
C188-left-heart-tongue-skeletal-Skeletal-diaphragm-throat	0
C189-b-splenic-tonsil-CD19-lymph-appendix-spleen	0
C19-embryonic-testis-cord-chronic-CD14-NK-mesothelioma	0
C190-colon-small-rectum-duodenum-appendix-temporal-oral	0
C191-leiomyoblastoma-Mast-parietal-acute-bone-neuroepithelioma-embryonic	0
C192-Neutrophils-CD14-Peripheral-Eosinophils-CD8-Natural-CD4	0
C193-Mesenchymal-Adipocyte-mature-Cardiac-heart-CD14CD16-CD14	0
C194-MCF7-breast-prostate-Intestinal-diffuse-Wilms-Alveolar	0
C195-Small-Gingival-Bronchial-Smooth-mesenchymal-Urothelial-Tracheal	0
C196-testicular-iPS-H9-teratocarcinoma-HES3GFP-choriocarcinoma-endometrial	0
C197-tongue-esophagus-tonsil-salivary-cervix-nasal-Gingival	0
C198-Mesenchymal-Hair-Hepatic-Fibroblast-Smooth-tenocyte-Pericytes	0.314
C199-glioblastoma-B-osteosarcoma-Fibroblast-heart-rhabdomyosarcoma-myxofibrosarcoma	0
C2-Eosinophils-Neutrophils-CD14-Whole-Basophils-Peripheral-Mast	0
C20-heart-left-skeletal-diaphragm-tongue-umbilical-throat	0
C200-seminal-Cardiac-Smooth-Hair-submaxillary-Neutrophils-mixed	0.101
C201-colon-small-adenocarcinoma-duodenum-temporal-signet-gall	0
C202-salivary-skin-penis-tongue-uterus-cervical-immature	0
C203-acute-NK-chronic-CD133-lymphoma-immature-Dendritic	0
C204-Smooth-nasal-CD4-CD19-CD8-CD14-CD34	0
C205-mycosis-cord-hairy-xeroderma-CD4-B-b	0
C206-melanoma-somatostatinoma-nonsmall-small-neuroblastoma-smallcell-pituitary	0
C207-Corneal-Keratinocyte-Esophageal-Mammary-Bronchial-Urothelial-Sebocyte	0
C208-skin-amniotic-papillotubular-salivary-umbilical-Alveolar-serous	0
C209-acute-myelodysplastic-CD34-granulocyte-CD133-liver-spleen	0
C21-cord-mycosis-hairy-xeroderma-adult-CD4-anaplastic	0
C210-Burkitt-lymphoma-appendix-acute-diffuse-CD19-tonsil	0
C211-small-Hepatocyte-liver-colon-temporal-duodenum-kidney	0
C212-chronic-acute-Whole-Reticulocytes-leukemia-blood-CD34	0
C213-CD14-Natural-CD8-CD4-Basophils-Eosinophils-Peripheral	0
C214-Neurons-Neural-duodenum-temporal-occipital-parietal-brain	0
C215-chronic-acute-peripheral-Hepatocyte-osteosarcoma-NK-immature	0
C216-osteosarcoma-Smooth-Mesenchymal-large-neuroectodermal-acute-CD34	0
C217-carcinoid-neuroectodermal-mature-mesodermal-colon-acute-occipital	0
C218-tonsil-lymph-CD19-spleen-colon-appendix-salivary	0
C219-nasal-Basophils-amniotic-Melanocyte-CD14-Osteoblast-duodenum	0
C22-CD4-CD8-Natural-Basophils-CD14-Peripheral-CD19	0
C220-Adipocyte-mature-left-breast-skin-liver-adipose	0
C221-alveolar-Osteoblast-Myoblast-mesenchymal-liposarcoma-Smooth-hepatocellular	0
C222-Melanocyte-Tracheal-Neutrophils-seminal-Smooth-Hair-Chondrocyte	0.0467
C223-Chondrocyte-basal-renal-Fibroblast-Smooth-spindle-Synoviocyte	0
C224-clear-serous-pleomorphic-choriocarcinoma-mesothelioma-amniotic-renal	0
C225-ductal-alveolar-giant-prostate-salivary-squamous-Tracheal	0
C226-Corneal-Keratinocyte-Esophageal-Urothelial-Mammary-Bronchial-Tracheal	0
C227-chorionic-amniotic-Mesenchymal-Placental-gastric-diaphragm-tongue	0
C228-colon-Intestinal-Prostate-hepatoblastoma-hepatocellular-testis-adult	0
C229-Mesenchymal-CD4-Melanocyte-acute-skeletal-left-heart	0.0856
C23-CD4-CD8-Natural-Peripheral-Basophils-CD19-CD14	0
C230-aorta-normal-heart-penis-osteosarcoma-basal-lung	0
C231-Mesothelial-mesenchymal-mesothelioma-Fibroblast-Preadipocyte-leiomyoma-mycosis	0
C232-teratocarcinoma-HES3GFP-H9-iPS-testicular-neuroblastoma-cerebellum	0
C233-uterus-cervix-ovary-epididymis-colon-rectum-MCF7	0
C234-oral-epidermoid-malignant-cervical-ductal-lung-keratoacanthoma	0
C235-Intestinal-Prostate-liver-colon-small-kidney-pancreas	0
C236-CD14-Neutrophils-Monocytederived-renal-Eosinophils-testis-mesothelioma	0
C237-acute-breast-testicular-hepatoblastoma-chronic-argyrophil-Bronchial	0
C238-stomach-gall-breast-duodenum-temporal-MCF7-smallcell	0
C239-CD4-lymphangiectasia-CD8-NK-mycosis-Renal-hairy	0
C24-pineal-eye-retina-retinoblastoma-medulloblastoma-small-cerebral	0
C240-Adipocyte-Preadipocyte-Osteoblast-Chondrocyte-tenocyte-Synoviocyte-mesenchymal	0
C241-Reticulocytes-chronic-Tracheal-Hodgkin-Endothelial-Hair-thymus	-1.071
C242-acute-Chondrocyte-myelodysplastic-granulocyte-biphenotypic-Fibroblast-stomach	0
C243-Chondrocyte-trachea-Synoviocyte-mesodermal-renal-Fibroblast-Ewing	0
C244-CD14-Monocytederived-Hepatocyte-heart-Neutrophils-acute-Macrophage	0
C245-prostate-penis-salivary-esophagus-kidney-Neutrophils-Pancreatic	0
C246-Neutrophils-Eosinophils-Whole-CD14-CD14CD16-Basophils-migratory	0
C247-pons-locus-medulla-spinal-paracentral-medial-occipital	0
C248-iPS-Aortic-Hep2-amygdala-acute-medial-Myoblast	0.426
C249-nonsmall-small-smallcell-occipital-somatostatinoma-maxillary-medial	0
C25-small-colon-temporal-duodenum-liver-Hepatocyte-gall	0
C250-Mast-Neutrophils-CD14-Eosinophils-CD8-Peripheral-CD4	0.054
C251-gall-tonsil-trachea-CD14-salivary-throat-tongue	0
C252-hepatic-Olfactory-sacrococcigeal-leiomyoma-normal-Synoviocyte-glioblastoma	0.221
C253-spleen-rhabdomyosarcoma-Hepatocyte-small-uterus-liver-rectum	0
C254-prostate-rhabdomyosarcoma-seminal-Fibroblast-transitionalcell-Smooth-Iris	0
C255-Wilms-leiomyoblastoma-kidney-adrenal-MCF7-epithelioid-Mast	0
C256-occipital-caudate-amygdala-medial-thalamus-hippocampus-medulla	0
C257-pineal-insula-frontal-occipital-temporal-medial-paracentral	0
C258-hepatoblastoma-hepatocellular-signet-colon-Intestinal-Prostate-gastric	0
C259-Preadipocyte-Adipocyte-Fibroblast-Chondrocyte-tenocyte-normal-Ewing	0.054
C26-Eosinophils-Neutrophils-CD14-CD14CD16-Basophils-Monocytederived-Whole	0
C260-acute-chronic-Natural-NK-Basophils-biphenotypic-blood	0
C261-locus-medial-parietal-pons-diencephalon-olfactory-spinal	0
C262-breast-MCF7-skeletal-Reticulocytes-mucinous-hepatoblastoma-Wilms	0
C263-cervical-keratoacanthoma-tongue-skin-esophagus-throat-tonsil	0
C264-giant-keratoacanthoma-colon-fibrosarcoma-HES3GFP-Hep2-acute	0
C265-CD4-Eosinophils-CD14-Natural-CD19-Basophils-CD8	0.0597
C266-acute-chronic-leukemia-small-choriocarcinoma-hepatoma-Mast	0
C267-pancreatic-placenta-choriocarcinoma-testicular-teratocarcinoma-chorionic-clear	0
C268-Mallassezderived-Urothelial-Gingival-Small-Bronchial-Tracheal-Prostate	0
C269-Basophils-Mast-Eosinophils-mature-CD14-chorionic-CD4	0
C27-pancreas-temporal-duodenum-salivary-ductus-umbilical-lung	0
C270-CD4-Fibroblast-acute-iPS-Aortic-CD34-Smooth	0.103
C271-pineal-spinal-locus-globus-medulla-thalamus-cerebellum	0
C272-CD19-CD4-CD8-Whole-Peripheral-lymph-tonsil	0
C273-Neutrophils-CD14-Eosinophils-Monocytederived-CD4-Natural-Mast	0.054
C274-CD14-Mast-immature-Basophils-mature-vagina-Hepatocyte	0
C275-pons-medulla-cerebellum-locus-thalamus-diencephalon-spinal	0
C276-mesothelioma-kidney-renal-small-clear-cerebellum-Renal	0
C277-mesothelioma-epithelioid-thyroid-extraskeletal-alveolar-glioblastoma-adenocarcinoma	0
C278-amygdala-hippocampus-insula-medial-putamen-temporal-olfactory	0
C279-parietal-cerebellum-occipital-temporal-middle-duodenum-medial	0
C28-thymus-acute-vein-Hodgkin-chronic-throat-Dendritic	0
C280-Mast-Natural-CD19-CD8-Eosinophils-CD34-CD4	0.0557
C281-Hodgkin-Reticulocytes-chronic-NK-acute-retinoblastoma-small	-0.521
C282-acute-B-tonsil-CD19-submaxillary-lymph-throat	0
C283-tenocyte-Chondrocyte-mesenchymal-Macrophage-pleomorphic-Synoviocyte-cholangiocellular	0
C284-parietal-occipital-medial-temporal-olfactory-locus-hippocampus	0.289
C285-cervical-Hep2-small-colon-temporal-duodenum-bronchogenic	0
C286-cerebellum-occipital-optic-parietal-globus-caudate-medial	0
C287-Hepatocyte-Chondrocyte-Adipocyte-Synoviocyte-liver-tenocyte-mesenchymal	0
C288-Chondrocyte-Renal-Pericytes-Fibroblast-aorta-Smooth-Meningeal	0.145
C289-chorionic-skeletal-heart-Mast-amniotic-granulosa-left	0
C29-mature-adipose-Adipocyte-breast-Lymphatic-vein-heart	0
C290-Eosinophils-CD14-Basophils-Mast-CD4-CD8-immature	0.102
C291-spinal-substantia-retina-medulla-tongue-skeletal-trachea	0
C292-Mesenchymal-skin-umbilical-Adipocyte-mesenchymal-Chondrocyte-skeletal	0.378
C293-CD14-CD14CD16-Basophils-Peripheral-immature-Eosinophils-CD34	0
C294-CD14-Macrophage-Monocytederived-CD14CD16-Neutrophils-Basophils-Peripheral	0
C295-Fibroblast-Smooth-Myoblast-Chondrocyte-hepatic-Synoviocyte-Preadipocyte	0.221
C296-gall-small-mesothelioma-acute-bronchioalveolar-epidermoid-mixed	0
C297-Eosinophils-CD4-Basophils-Natural-Neutrophils-CD8-Peripheral	0
C298-small-optic-substantia-thalamus-diencephalon-globus-occipital	0
C299-CD14CD16-Eosinophils-Neutrophils-CD14-Whole-Basophils-blood	0
C3-occipital-temporal-insula-medial-postcentral-frontal-amygdala	0
C30-thyroid-throat-mesothelioma-mucinous-trachea-chorionic-mesenchymal	0
C300-CD4-CD8-NK-Natural-blood-mycosis-Basophils	0
C301-Smooth-mesenchymal-Endothelial-Hepatic-basal-hepatic-chorionic	0.771
C302-acute-peripheral-Neutrophils-NK-myelodysplastic-CD34-carcinoid	0
C303-CD14-Basophils-Peripheral-Eosinophils-CD14CD16-Neutrophils-Whole	0
C305-heart-skeletal-smooth-left-bladder-penis-esophagus	0
C31-skeletal-tongue-diaphragm-throat-penis-skin-trachea	0
C32-middle-occipital-parietal-hippocampus-amygdala-medial-olfactory	0
C33-Reticulocytes-liver-Whole-blood-chronic-acute-spleen	0
C34-placenta-chorionic-choriocarcinoma-mesothelioma-Wilms-Smooth-bile	0
C35-caudate-putamen-diencephalon-nucleus-globus-thalamus-insula	0
C36-B-b-splenic-plasma-xeroderma-adrenal-Burkitt	0
C37-salivary-submaxillary-parotid-seminal-tongue-ductus-trachea	0
C38-extraskeletal-rhabdomyosarcoma-adrenal-rectal-mesothelioma-lung-Wilms	0
C39-epididymis-ductus-seminal-testis-acute-thyroid-CD133	0
C4-optic-corpus-substantia-medulla-spinal-thalamus-globus	0
C40-eye-retina-Lens-pineal-tongue-retinoblastoma-small	0
C41-retina-eye-medulla-Retinal-medulloblastoma-kidney-pineal	0
C42-small-lung-maxillary-pharyngeal-Mesenchymal-Wilms-colon	0
C43-ductus-seminal-duodenum-temporal-gall-prostate-bladder	0
C44-Dendritic-CD19-CD133-granulocyte-acute-thymus-immature	0
C45-testicular-choriocarcinoma-H9-teratocarcinoma-Wilms-pancreatic-iPS	0
C46-acute-Hodgkin-thymus-CD8-chronic-CD4-merkel	0
C47-CD19-Burkitt-acute-xeroderma-tonsil-lymphoma-appendix	0
C48-smooth-bladder-esophagus-colon-penis-aorta-uterus	0
C49-H9-iPS-testicular-HES3GFP-teratocarcinoma-hepatoblastoma-choriocarcinoma	0
C5-Hepatocyte-liver-hepatocellular-Intestinal-kidney-small-pancreas	0
C50-chorionic-placenta-amniotic-migratory-smallcell-chronic-choriocarcinoma	0
C51-kidney-mesothelioma-renal-signet-gall-lung-pancreas	0
C52-adult-NK-chronic-cord-testis-embryonic-myeloma	0
C53-medulloblastoma-pineal-retinoblastoma-small-retina-eye-pituitary	0
C54-Dendritic-Macrophage-Monocytederived-CD14-leiomyoma-adipose-immature	0
C55-hepatocellular-Intestinal-liver-Prostate-fibrosarcoma-Hepatocyte-hepatoblastoma	0
C56-heart-left-umbilical-skeletal-penis-diaphragm-tongue	0
C57-Neutrophils-Eosinophils-Whole-CD4-CD8-CD19-Natural	0
C58-Melanocyte-melanoma-retina-Retinal-eye-migratory-H9	0
C59-Smooth-Fibroblast-Mesenchymal-tenocyte-Ewing-skin-hepatic	0.418
C6-CD14-Eosinophils-Basophils-Peripheral-CD34-Natural-immature	0
C60-esophagus-tonsil-throat-tongue-uterus-cervix-cervical	0
C61-migratory-Dendritic-immature-Macrophage-xeroderma-cord-b	0
C62-Burkitt-tonsil-CD19-submaxillary-spleen-salivary-lymph	0
C63-neuroectodermal-neuroblastoma-carcinoid-peripheral-chronic-neuroepithelioma-acute	0
C64-Mast-chronic-acute-immature-chorionic-Basophils-Dendritic	0
C65-CD14-Eosinophils-Monocytederived-Basophils-immature-Macrophage-Neutrophils	0
C66-cerebellum-middle-occipital-parietal-medial-amygdala-hippocampus	0
C67-CD14-Monocytederived-Macrophage-dura-Dendritic-spleen-lung	0
C68-amniotic-chorionic-Placental-salivary-placenta-tongue-mesothelioma	0
C69-anaplastic-CD14-cord-hairy-mycosis-adult-NK	0
C7-CD14-Eosinophils-Neutrophils-Smooth-Basophils-Macrophage-Mast	0
C70-parotid-submaxillary-salivary-throat-trachea-aorta-tongue	0
C71-Monocytederived-Macrophage-CD14-Dendritic-Osteoblast-leiomyoma-Prostate	0
C72-skeletal-tongue-throat-heart-diaphragm-penis-left	0
C73-pineal-eye-retina-caudate-cerebellum-left-parietal	0
C74-splenic-B-b-plasma-xeroderma-lymphoma-hairy	0
C75-Eosinophils-Natural-CD8-Basophils-CD14-CD4-Peripheral	0
C76-argyrophil-gastrointestinal-temporal-duodenum-neuroblastoma-merkel-smallcell	0
C77-Saos2-osteosarcoma-Neutrophils-Natural-Chondrocyte-Basophils-CD8	0
C78-lymphoma-plasma-tonsil-appendix-lymph-seminal-trachea	0
C79-chorionic-Chondrocyte-Cardiac-Smooth-Fibroblast-Preadipocyte-Mesenchymal	1.116
C8-Natural-CD8-Basophils-CD4-CD14-Peripheral-CD34	0
C80-immature-migratory-CD14-Dendritic-splenic-cord-Mast	0
C81-trachea-salivary-throat-aorta-eye-submaxillary-parotid	0
C82-Basophils-CD14-Eosinophils-Natural-Peripheral-immature-CD34	0
C83-choriocarcinoma-pancreatic-placenta-chorionic-HES3GFP-testicular-amniotic	0
C84-choriocarcinoma-pancreatic-Wilms-Mallassezderived-thymus-salivary-colon	0
C85-neuroblastoma-carcinoid-retinoblastoma-small-pineal-rhabdomyosarcoma-medulloblastoma	0
C86-colon-carcinoid-small-neuroectodermal-giant-large-neuroepithelioma	0
C87-retinoblastoma-left-nonsmall-heart-small-diaphragm-bronchogenic	0
C88-Melanocyte-melanoma-Macrophage-Mesenchymal-migratory-Dendritic-Monocytederived	0
C89-small-retinoblastoma-medulloblastoma-iPS-acantholytic-eye-bronchogenic	0
C9-skeletal-diaphragm-tongue-throat-penis-heart-left	0
C90-neuroectodermal-peripheral-neuroepithelioma-neuroblastoma-carcinoid-parietal-putamen	0
C91-Fibroblast-Smooth-mesenchymal-Mesothelial-Small-Preadipocyte-Hair	0.87
C92-CD14CD16-CD14-Eosinophils-Basophils-Neutrophils-Macrophage-Whole	0
C93-chronic-acute-leukemia-acantholytic-medulloblastoma-testis-papillotubular	0
C94-smallcell-adrenal-lung-nonsmall-small-somatostatinoma-teratocarcinoma	0
C95-lung-aorta-trachea-penis-Alveolar-throat-endometrioid	0
C96-non-acute-tonsil-spleen-Burkitt-lymphoma-appendix	0
C97-small-smallcell-gastrointestinal-argyrophil-putamen-duodenum-brain	0
C98-CD8-Natural-Basophils-blood-CD4-Peripheral-Whole	0
C99-hairy-mycosis-submaxillary-salivary-cord-kidney-parotid	0

Repeat families with enriched expression in this sampleSummary:Ranked list of repeat family expression in this sample relative tothe median expression in the FANTOM5 collection is shown. Value is log10transformed. Analyst:NA link to dataset. data

TFBS(DNA)motifs over-represented in proximal region of promoters active in this sample

JASPAR motifsSummary:Association of JASPAR motif to the promoter expression in thissample. Pearson's correlation between the number of TFBSs estimated byusing the position-weight matrix for each promoter and its expression isexpressed as Z-score by taking the ones based on random position-weightmatrix, and the tail probability of the normal distribution correspondingto the Z-score is taken as the resulting P-value. Lower P-value indicatesmore (non-random) association of the motif to promoter expression Analyst: Michiel de Hoon link to dataset. data

library id: CNhs12581

Jaspar motif	Logo	P-value
MA0002.2	MA0002.2	0.0369
MA0003.1	MA0003.1	0.0236
MA0004.1	MA0004.1	0.935
MA0006.1	MA0006.1	0.491
MA0007.1	MA0007.1	0.275
MA0009.1	MA0009.1	0.0137
MA0014.1	MA0014.1	0.727
MA0017.1	MA0017.1	0.00134
MA0018.2	MA0018.2	0.993
MA0019.1	MA0019.1	0.569
MA0024.1	MA0024.1	0.0113
MA0025.1	MA0025.1	0.0551
MA0027.1	MA0027.1	0.519
MA0028.1	MA0028.1	2.97782e-4
MA0029.1	MA0029.1	0.0211
MA0030.1	MA0030.1	0.555
MA0031.1	MA0031.1	0.523
MA0035.2	MA0035.2	0.128
MA0038.1	MA0038.1	0.577
MA0039.2	MA0039.2	0.464
MA0040.1	MA0040.1	0.314
MA0041.1	MA0041.1	0.767
MA0042.1	MA0042.1	0.486
MA0043.1	MA0043.1	0.174
MA0046.1	MA0046.1	0.0113
MA0047.2	MA0047.2	0.564
MA0048.1	MA0048.1	0.21
MA0050.1	MA0050.1	0.635
MA0051.1	MA0051.1	0.362
MA0052.1	MA0052.1	0.709
MA0055.1	MA0055.1	0.421
MA0057.1	MA0057.1	0.249
MA0058.1	MA0058.1	0.569
MA0059.1	MA0059.1	0.731
MA0060.1	MA0060.1	0.0284
MA0061.1	MA0061.1	0.0596
MA0062.2	MA0062.2	1.16408e-4
MA0065.2	MA0065.2	8.02025e-5
MA0066.1	MA0066.1	0.0624
MA0067.1	MA0067.1	0.237
MA0068.1	MA0068.1	0.283
MA0069.1	MA0069.1	0.303
MA0070.1	MA0070.1	0.578
MA0071.1	MA0071.1	0.0343
MA0072.1	MA0072.1	0.794
MA0073.1	MA0073.1	0.845
MA0074.1	MA0074.1	0.398
MA0076.1	MA0076.1	3.30205e-5
MA0077.1	MA0077.1	0.861
MA0078.1	MA0078.1	0.752
MA0079.2	MA0079.2	0.85
MA0080.2	MA0080.2	5.371e-6
MA0081.1	MA0081.1	0.361
MA0083.1	MA0083.1	2.09484e-4
MA0084.1	MA0084.1	0.135
MA0087.1	MA0087.1	0.478
MA0088.1	MA0088.1	0.894
MA0090.1	MA0090.1	2.50448e-6
MA0091.1	MA0091.1	0.541
MA0092.1	MA0092.1	0.694
MA0093.1	MA0093.1	0.714
MA0099.2	MA0099.2	1.65961e-17
MA0100.1	MA0100.1	0.791
MA0101.1	MA0101.1	0.909
MA0102.2	MA0102.2	0.147
MA0103.1	MA0103.1	1.25754e-5
MA0104.2	MA0104.2	0.568
MA0105.1	MA0105.1	8.1811e-4
MA0106.1	MA0106.1	0.982
MA0107.1	MA0107.1	0.768
MA0108.2	MA0108.2	0.275
MA0111.1	MA0111.1	0.108
MA0112.2	MA0112.2	0.00183
MA0113.1	MA0113.1	0.556
MA0114.1	MA0114.1	0.00989
MA0115.1	MA0115.1	0.00367
MA0116.1	MA0116.1	8.61873e-4
MA0117.1	MA0117.1	0.493
MA0119.1	MA0119.1	0.833
MA0122.1	MA0122.1	0.64
MA0124.1	MA0124.1	0.374
MA0125.1	MA0125.1	0.34
MA0131.1	MA0131.1	0.105
MA0135.1	MA0135.1	0.0604
MA0136.1	MA0136.1	0.0417
MA0137.2	MA0137.2	0.0503
MA0138.2	MA0138.2	7.45232e-4
MA0139.1	MA0139.1	0.235
MA0140.1	MA0140.1	0.56
MA0141.1	MA0141.1	0.00282
MA0142.1	MA0142.1	0.272
MA0143.1	MA0143.1	0.997
MA0144.1	MA0144.1	0.553
MA0145.1	MA0145.1	0.283
MA0146.1	MA0146.1	0.117
MA0147.1	MA0147.1	0.696
MA0148.1	MA0148.1	0.575
MA0149.1	MA0149.1	0.618
MA0150.1	MA0150.1	0.00245
MA0152.1	MA0152.1	0.0997
MA0153.1	MA0153.1	0.52
MA0154.1	MA0154.1	0.00208
MA0155.1	MA0155.1	0.183
MA0156.1	MA0156.1	0.454
MA0157.1	MA0157.1	0.559
MA0159.1	MA0159.1	0.15
MA0160.1	MA0160.1	0.0169
MA0162.1	MA0162.1	0.547
MA0163.1	MA0163.1	0.00816
MA0164.1	MA0164.1	0.329
MA0258.1	MA0258.1	0.00512
MA0259.1	MA0259.1	0.692

FANTOM5 phase1 novel unique motifsSummary:Association of the 169 novel and unique motifs discovered in FANTOM5 phase1 in this sample. Among the de-novo motifs discovered by DMF, HOMER,ChIPMunk, and ScanAll, only novel motifs are selected after comparison with known motif sets, and their clustering based on MACRO-APE resulted in169 novel and unique motifs. Their association to the promoter expression is evaluated in the same way to the JASPAR motif above Analyst: Michiel de Hoon link to dataset. data

library id: CNhs12581

Novel motif	Logo	P-value
1	1	0.135
10	10	0.365
100	100	0.662
101	101	0.702
102	102	0.147
103	103	0.231
104	104	0.924
105	105	0.186
106	106	0.00623
107	107	0.0498
108	108	0.453
109	109	0.296
11	11	0.178
110	110	0.674
111	111	0.101
112	112	0.286
113	113	0.438
114	114	0.392
115	115	0.0122
116	116	0.889
117	117	0.917
118	118	0.706
119	119	0.34
12	12	0.932
120	120	0.315
121	121	0.573
122	122	0.115
123	123	0.242
124	124	0.054
125	125	0.316
126	126	0.145
127	127	0.0317
128	128	0.0364
129	129	0.158
13	13	0.52
130	130	0.719
131	131	0.11
132	132	0.573
133	133	0.806
134	134	0.785
135	135	0.435
136	136	0.994
137	137	0.474
138	138	0.242
139	139	0.599
14	14	0.513
140	140	0.679
141	141	0.0355
142	142	0.237
143	143	0.12
144	144	0.707
145	145	0.492
146	146	0.393
147	147	0.322
148	148	0.243
149	149	0.43
15	15	0.0444
150	150	0.713
151	151	0.389
152	152	0.379
153	153	0.673
154	154	0.88
155	155	0.00287
156	156	0.0643
157	157	0.806
158	158	0.168
159	159	0.986
16	16	0.255
160	160	0.00991
161	161	0.231
162	162	0.284
163	163	0.179
164	164	0.349
165	165	0.636
166	166	0.49
167	167	0.558
168	168	0.191
169	169	0.0269
17	17	0.611
18	18	0.462
19	19	0.31
2	2	0.18
20	20	0.749
21	21	0.974
22	22	0.374
23	23	0.379
24	24	0.507
25	25	0.138
26	26	0.287
27	27	0.0761
28	28	0.961
29	29	0.826
3	3	0.658
30	30	0.67
31	31	0.497
32	32	0.388
33	33	0.745
34	34	0.262
35	35	0.497
36	36	0.178
37	37	0.846
38	38	0.222
39	39	0.962
4	4	0.081
40	40	0.0641
41	41	0.226
42	42	0.457
43	43	0.218
44	44	0.00749
45	45	0.372
46	46	0.136
47	47	0.246
48	48	0.368
49	49	0.0883
5	5	0.472
50	50	0.939
51	51	0.223
52	52	0.439
53	53	0.599
54	54	0.505
55	55	0.245
56	56	0.287
57	57	0.712
58	58	0.132
59	59	0.00666
6	6	0.156
60	60	0.0919
61	61	0.263
62	62	0.0278
63	63	0.332
64	64	0.0609
65	65	0.146
66	66	0.292
67	67	0.915
68	68	0.835
69	69	0.194
7	7	0.116
70	70	0.131
71	71	0.378
72	72	0.635
73	73	0.865
74	74	0.201
75	75	0.395
76	76	0.397
77	77	0.291
78	78	0.0609
79	79	0.931
8	8	0.0589
80	80	0.478
81	81	0.293
82	82	0.253
83	83	0.691
84	84	0.543
85	85	0.166
86	86	0.517
87	87	0.884
88	88	0.89
89	89	0.205
9	9	0.52
90	90	0.676
91	91	0.47
92	92	0.554
93	93	0.48
94	94	0.52
95	95	0.612
96	96	0.444
97	97	0.351
98	98	0.00263
99	99	0.913

de novo motifs identified by HOMER in promoters active in this sampleSummary:The result of HOMER in this sample is shown. Analyst:NA library id: CNhs12581

FANTOM5 (FF) ontology

Direct parent terms

is_a relathionship
EFO:0002091 biological replicate
FF:0000666 human Fibroblast - Aortic Adventitial, nuclear fraction sample

Ancestor terms (non development)Summary:Connected ontology terms with is_a, part_of or located_in relationship Analyst: Hideya Kawaji link to source data data

CL: Cell type
0000000 (cell), 0000000 (cell)
0000003 (native cell)
0000548 (animal cell)
0002320 (connective tissue cell)
0002371 (somatic cell)
0000255 (eukaryotic cell)
0000057 (fibroblast)
1000306 (fibroblast of tunica adventitia of artery)
0002547 (fibroblast of the aortic adventitia)

UBERON: Anatomy
0000468 (multi-cellular organism)
0000947 (aorta)
0001637 (artery)
0000483 (epithelium)
0002384 (connective tissue)
0000479 (tissue)
0000055 (vessel)
0000064 (organ part)
0000062 (organ)
0004111 (anatomical conduit)
0004120 (mesoderm-derived structure)
0000061 (anatomical structure)
0000465 (material anatomical entity)
0003914 (epithelial tube)
0000025 (tube)
0004923 (organ component layer)
0000477 (anatomical cluster)
0000467 (anatomical system)
0000060 (anatomical wall)
0001062 (anatomical entity)
0000480 (anatomical group)
0000119 (cell layer)
0004573 (systemic artery)
0003509 (arterial blood vessel)
0007500 (epithelial tube open at both ends)
0001981 (blood vessel)
0002049 (vasculature)
0004797 (blood vessel layer)
0010317 (germ layer / neural crest derived structure)
0007798 (vascular system)
0000415 (artery wall)
0007240 (tunica adventitia of artery)
0005742 (adventitia)
0005734 (tunica adventitia of blood vessel)
0004664 (aorta tunica adventitia)
0004535 (cardiovascular system)
0004571 (systemic arterial system)
0010191 (aortic system)
0004572 (arterial system)
0004537 (blood vasculature)
0001009 (circulatory system)
0004663 (aorta wall)

FF: FANTOM5
0000102 (sample by type)
0000210 (human sample)
0000002 (in vivo cell sample)
0000101 (sample by species)
0000057 (fibroblast sample)
0000001 (sample)
0000408 (cellular fractionation sample)
0000350 (experimentally modified sample)
0000058 (human fibroblast of the aortic adventitia sample)
0000406 (nuclear fraction sample)
0000666 (human Fibroblast - Aortic Adventitial, nuclear fraction sample)

Ancestor terms (development)Summary:Connected ontology terms with develops_from, derives_from or preceded_by relationship Analyst: Hideya Kawaji link to source data data
CL:0000134 (mesenchymal cell)

@@ Line 1: / Line 1: @@
 {{f5samples
+|DRA_sample_Accession=CAGE@SAMD00005544
+|DRA_sample_Accession_RNASeq=sRNA-Seq@SAMD00005544
+|accession_numbers=CAGE;DRX008033;DRR008905;DRZ000330;DRZ001715;DRZ011680;DRZ013065
+|accession_numbers_RNASeq=sRNA-Seq;DRX036985;DRR041351;DRZ006993
 |ancestors_in_anatomy_facet=UBERON:0000468,UBERON:0000947,UBERON:0001637,UBERON:0000483,UBERON:0002384,UBERON:0000479,UBERON:0000055,UBERON:0000064,UBERON:0000062,UBERON:0004111,UBERON:0004120,UBERON:0000061,UBERON:0000465,UBERON:0003914,UBERON:0000025,UBERON:0004923,UBERON:0000477,UBERON:0000467,UBERON:0000060,UBERON:0001062,UBERON:0000480,UBERON:0000119,UBERON:0004573,UBERON:0003509,UBERON:0007500,UBERON:0001981,UBERON:0002049,UBERON:0004797,UBERON:0010317,UBERON:0007798,UBERON:0000415,UBERON:0007240,UBERON:0005742,UBERON:0005734,UBERON:0004664,UBERON:0004535,UBERON:0004571,UBERON:0010191,UBERON:0004572,UBERON:0004537,UBERON:0001009,UBERON:0004663
 |ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000548,CL:0002320,CL:0002371,CL:0000255,CL:0000057,CL:1000306,CL:0002547
@@ Line 7: / Line 11: @@
 |created_by=
 |creation_date=
-|datafreeze_phase=1
+|data_phase=2
+|datafreeze_phase=2
 |def=
 |expression_enrichment_score=chr2:19558373..19558392,-!p1@OSR1!1.96!238.34!OSR1;;chr3:141105705..141105770,+!p4@ZBTB38!1.60!46.61!ZBTB38;;chr6:134210243..134210257,+!p1@TCF21!1.53!32.57!TCF21;;chr18:19749541..19749557,+!p1@GATA6!1.48!89.11!GATA6;;chr18:19749386..19749404,+!p2@GATA6!1.33!29.26!GATA6;;chr1:158985493..158985535,+!p4@IFI16!1.28!27.28!IFI16;;chr6:10415276..10415341,-!p2@TFAP2A!1.28!22.24!TFAP2A;;chr15:42749722..42749739,-!p2@ZFP106!1.27!30.98!ZFP106;;chr8:55370487..55370503,+!p1@SOX17!1.23!16.02!SOX17;;chr12:66218598..66218645,+!p2@HMGA2!1.21!69.12!HMGA2;;chr1:170632285..170632309,+!p1@PRRX1!1.21!17.08!PRRX1;;chr12:66218836..66218888,+!p1@HMGA2!1.19!134.79!HMGA2;;chr12:66218923..66218934,+!p14@HMGA2!1.19!14.43!HMGA2;;chr8:106330656..106330684,+!p1@ZFPM2!1.18!37.21!ZFPM2;;chr12:66218904..66218913,+!p11@HMGA2!1.16!13.51!HMGA2;;chr14:62162258..62162269,+!p2@HIF1A!1.15!124.60!HIF1A;;chr12:66218255..66218304,+!p3@HMGA2!1.14!34.43!HMGA2;;chr11:65686802..65686818,+!p6@DRAP1!1.14!22.38!DRAP1;;chr14:62162285..62162296,+!p3@HIF1A!1.13!64.75!HIF1A;;chrX:2418949..2419024,-!p1@DHRSX,p1@ZBED1!1.12!12.31!ZBED1;;chr4:174451370..174451387,-!p1@HAND2!1.12!12.05!HAND2;;chr2:208030647..208030689,-!p1@KLF7!1.11!98.91!KLF7;;chr16:67881588..67881612,-!p2@CENPT!1.11!16.29!CENPT;;chr21:36260295..36260310,-!p3@RUNX1!1.09!18.40!RUNX1;;chr3:141121847..141121868,+!p5@ZBTB38!1.09!17.21!ZBTB38;;chr10:63809106..63809127,+!p1@ARID5B!1.07!146.44!ARID5B;;chr1:158979872..158979898,+!p3@IFI16!1.06!32.84!IFI16;;chr10:63809077..63809089,+!p5@ARID5B!1.05!22.64!ARID5B;;chr20:6748325..6748352,+!p1@BMP2!1.05!14.96!BMP2;;chr11:65686732..65686756,+!p2@DRAP1!0.99!37.60!DRAP1;;chr11:46299539..46299620,+!p2@CREB3L1!0.99!14.96!CREB3L1;;chr15:67418177..67418204,+!p9@SMAD3!0.98!8.47!SMAD3;;chr19:45971246..45971265,+!p1@FOSB!0.97!160.88!FOSB;;chr6:144329384..144329405,-!p1@PLAGL1!0.97!98.51!PLAGL1;;chr8:106330696..106330719,+!p2@ZFPM2!0.96!10.33!ZFPM2;;chr8:25902876..25902936,-!p1@EBF2!0.96!8.21!EBF2;;chr8:72756637..72756664,-!p3@MSC!0.95!9.14!MSC;;chr1:158979922..158979933,+!p13@IFI16!0.95!7.81!IFI16;;chr7:64467057..64467078,-!p1@ZNF117!0.93!144.72!ZNF117;;chr8:93074803..93074845,-!p1@RUNX1T1!0.93!7.41!RUNX1T1;;chr11:46299199..46299233,+!p1@CREB3L1!0.92!39.59!CREB3L1;;chr1:170632959..170632987,+!p4@PRRX1!0.92!8.08!PRRX1;;chr1:170633058..170633084,+!p5@PRRX1!0.92!7.28!PRRX1;;chr6:10412600..10412637,-!p1@TFAP2A!0.91!12.31!TFAP2A;;chr6:126240442..126240459,+!p4@NCOA7!0.91!9.27!NCOA7;;chr6:126240380..126240430,+!p2@NCOA7!0.90!18.54!NCOA7;;chr6:144289132..144289134,-!p3@PLAGL1!0.90!16.55!PLAGL1;;chr9:128510454..128510469,+!p3@PBX3!0.90!9.14!PBX3;;chr19:9609272..9609297,-!p1@ZNF560!0.90!6.89!ZNF560;;chr9:16705069..16705086,-!p3@BNC2!0.89!6.75!BNC2;;chr10:63809134..63809145,+!p6@ARID5B!0.88!15.62!ARID5B;;chr3:114343768..114343822,-!p1@ZBTB20!0.87!29.66!ZBTB20;;chr18:53068911..53068935,-!p4@TCF4!0.87!7.28!TCF4;;chr17:46659728..46659749,-!p3@HOXB3!0.87!6.49!HOXB3;;chr5:72744594..72744609,-!p1@FOXD1!0.86!30.19!FOXD1;;chr4:174450089..174450153,-!p2@HAND2!0.86!6.22!HAND2;;chr12:54447637..54447659,+!p4@HOXC4!0.86!6.22!HOXC4;;chr19:52598958..52599026,-!p1@ZNF841!0.85!61.57!ZNF841;;chr3:141087393..141087426,+!p3@ZBTB38!0.85!25.82!ZBTB38;;chr7:86782094..86782108,+!p5@DMTF1!0.85!10.06!DMTF1;;chr2:66662281..66662308,+!p1@MEIS1!0.84!21.85!MEIS1;;chr1:170632723..170632739,+!p8@PRRX1!0.84!5.96!PRRX1;;chr11:65687222..65687240,+!p7@DRAP1!0.83!7.55!DRAP1;;chr6:10412392..10412409,-!p4@TFAP2A!0.83!6.62!TFAP2A;;chr1:59249688..59249703,-!p3@JUN!0.82!36.28!JUN;;chr3:187463179..187463201,-!p2@BCL6!0.82!24.76!BCL6;;chr7:35293685..35293718,-!p1@TBX20!0.82!5.56!TBX20;;chr3:101568349..101568365,+!p1@NFKBIZ!0.81!310.37!NFKBIZ;;chr2:28618532..28618610,+!p4@FOSL2!0.81!9.80!FOSL2;;chr21:36260343..36260402,-!p6@RUNX1!0.81!9.14!RUNX1;;chr12:80085061..80085119,-!p6@PAWR!0.81!9.00!PAWR;;chr2:200322654..200322707,-!p2@SATB2!0.81!8.21!SATB2;;chr5:158526459..158526481,-!p2@EBF1!0.81!7.41!EBF1;;chr3:25470156..25470227,+!p2@RARB!0.81!5.43!RARB;;chr3:42695180..42695201,+!p2@ZBTB47!0.81!5.43!ZBTB47;;chrX:128657457..128657475,-!p1@SMARCA1!0.80!66.73!SMARCA1;;chr17:46682321..46682362,-!p1@HOXB6!0.80!5.30!HOXB6;;chrX:77041657..77041668,-!p2@ATRX!0.79!11.12!ATRX;;chr7:113726357..113726443,+!p1@FOXP2!0.79!9.40!FOXP2;;chr5:72744445..72744466,-!p2@FOXD1!0.79!8.87!FOXD1;;chr3:168864315..168864339,-!p2@MECOM!0.79!8.87!MECOM;;chr3:141087562..141087594,+!p12@ZBTB38!0.79!5.16!ZBTB38;;chr11:65687362..65687436,+!p3@DRAP1!0.78!24.63!DRAP1;;chr14:24837368..24837401,+!p1@NFATC4!0.78!12.71!NFATC4;;chr7:1577899..1577943,+!p3@MAFK!0.78!5.03!MAFK;;chr4:149365827..149365870,-!p5@NR3C2!0.78!5.03!NR3C2;;chr7:4815238..4815327,+!p1@KIAA0415!0.77!117.58!AP5Z1;;chr9:16870710..16870763,-!p1@BNC2!0.77!8.87!BNC2;;chr10:63809090..63809097,+!p7@ARID5B!0.77!7.02!ARID5B;;chr9:16870659..16870675,-!p2@BNC2!0.77!6.09!BNC2;;chr8:11561684..11561751,+!p1@GATA4!0.77!4.90!GATA4;;chr1:170632250..170632277,+!p7@PRRX1!0.77!4.90!PRRX1;;chr12:56753869..56753930,-!p1@STAT2!0.76!233.70!STAT2;;chr21:36421535..36421610,-!p2@RUNX1!0.76!18.27!RUNX1;;chr1:158979851..158979865,+!p5@IFI16!0.76!11.25!IFI16;;chr16:86544113..86544145,+!p1@FOXF1!0.76!6.09!FOXF1;;chr2:66662895..66662907,+!p3@MEIS1!0.76!6.09!MEIS1;;chr16:31076332..31076388,-!p3@ZNF668!0.76!4.77!ZNF668;;chr16:67881647..67881663,-!p3@CENPT!0.76!4.77!CENPT;;chr19:44860820..44860843,-!p1@ZFP112,p1@ZNF285!0.75!13.77!ZFP112;;chr17:46655704..46655718,-!p2@HOXB4!0.75!7.15!HOXB4;;chr5:72743793..72743855,-!p4@FOXD1!0.75!5.56!FOXD1;;chr2:66662510..66662521,+!p6@MEIS1!0.75!4.63!MEIS1;;chr14:62162224..62162254,+!p1@HIF1A!0.74!730.63!HIF1A;;chr10:63809013..63809041,+!p3@ARID5B!0.74!27.54!ARID5B;;chr1:249153268..249153298,-!p1@ZNF692!0.74!26.48!ZNF692;;chr15:67418047..67418093,+!p4@SMAD3!0.74!5.83!SMAD3;;chr2:19558327..19558334,-!p2@OSR1!0.74!4.50!OSR1;;chr2:66662396..66662407,+!p4@MEIS1!0.74!4.50!MEIS1;;chr3:141121871..141121885,+!p13@ZBTB38!0.73!4.37!ZBTB38;;chr12:72056800..72056834,+!p1@THAP2!0.72!5.96!THAP2;;chr1:158985469..158985489,+!p7@IFI16!0.72!5.16!IFI16;;chr3:141087339..141087387,+!p2@ZBTB38!0.71!47.40!ZBTB38;;chr2:208394817..208394834,+!p3@CREB1!0.71!18.54!CREB1;;chr2:208030488..208030551,-!p3@KLF7!0.71!16.42!KLF7;;chrX:134478706..134478736,+!p1@ZNF449!0.71!14.96!ZNF449;;chr21:36259445..36259519,-!p4@RUNX1!0.71!12.71!RUNX1;;chr19:52956798..52956843,+!p1@ZNF578!0.71!8.87!ZNF578;;chr20:25677399..25677433,-!p3@ZNF337!0.71!8.47!ZNF337;;chr18:19749517..19749531,+!p3@GATA6!0.71!7.94!GATA6;;chr2:191878812..191878823,-!p2@STAT1!0.71!5.43!STAT1;;chr4:149363494..149363543,-!p1@NR3C2!0.71!4.10!NR3C2;;chr8:72755987..72756002,-!p7@MSC!0.71!4.10!MSC;;chr9:2158443..2158481,+!p2@SMARCA2!0.70!12.58!SMARCA2;;chr19:47922750..47922795,-!p1@MEIS3!0.70!7.02!MEIS3;;chr1:170633348..170633399,+!p2@PRRX1!0.70!5.69!PRRX1;;chr7:1577111..1577132,+!p4@MAFK!0.70!4.63!MAFK;;chr2:102091566..102091581,-!p1@RFX8!0.70!3.97!RFX8;;chr13:45150455..45150472,-!p8@TSC22D1!0.70!3.97!TSC22D1;;chr12:48298765..48298783,-!p2@VDR!0.69!8.87!VDR;;chr12:66218378..66218401,+!p6@HMGA2!0.69!6.36!HMGA2;;chr17:46621101..46621143,-!p7@HOXB2!0.69!5.43!HOXB2;;chr2:191878874..191878938,-!p1@STAT1!0.68!235.42!STAT1;;chr13:45151259..45151326,-!p2@TSC22D1!0.68!25.95!TSC22D1;;chr8:77593474..77593612,+!p1@ZFHX4!0.68!18.27!ZFHX4;;chr12:57504975..57505019,-!p2@STAT6!0.68!17.35!STAT6;;chr8:72756267..72756296,-!p4@MSC!0.68!5.83!MSC;;chr15:67418119..67418162,+!p5@SMAD3!0.68!4.24!SMAD3;;chr21:36260325..36260341,-!p14@RUNX1!0.68!3.84!RUNX1;;chr8:49833948..49833973,-!p2@SNAI2!0.67!27.01!SNAI2;;chr5:321810..321877,+!p1@AHRR!0.67!12.98!AHRR;;chr7:17338266..17338282,+!p1@AHR!0.66!45.02!AHR;;chr19:52901094..52901134,+!p1@ZNF528!0.66!27.01!ZNF528;;chr2:239756671..239756732,+!p1@TWIST2!0.66!12.84!TWIST2;;chr12:133707172..133707202,+!p2@ZNF10!0.66!9.00!ZNF10;;chr7:64467093..64467104,-!p2@ERV3-1,p2@ZNF117!0.66!8.08!ZNF117;;chr19:57019215..57019250,+!p1@ZNF471!0.66!5.69!ZNF471;;chr6:85473156..85473210,-!p2@TBX18!0.66!4.50!TBX18;;chr12:54410664..54410684,+!p1@HOXC4,p1@HOXC5,p1@HOXC6!0.66!3.58!HOXC5;;chr6:126112074..126112144,+!p1@NCOA7!0.65!54.29!NCOA7;;chr1:158979792..158979814,+!p2@IFI16!0.65!38.66!IFI16;;chr5:138609782..138609826,+!p5@MATR3!0.65!26.08!MATR3;;chr6:126102292..126102329,+!p3@NCOA7!0.65!12.98!NCOA7;;chr18:3451646..3451691,+!p3@TGIF1!0.65!10.46!TGIF1;;chr12:66218212..66218244,+!p5@HMGA2!0.65!5.30!HMGA2;;chr18:19750951..19750980,+!p10@GATA6!0.65!3.44!GATA6;;chr22:21771656..21771662,+!p1@HIC2!0.65!3.44!HIC2;;chr2:185463247..185463263,+!p1@ZNF804A!0.64!6.49!ZNF804A;;chr19:13134772..13134822,+!p2@NFIX!0.64!5.30!NFIX;;chr6:126240463..126240489,+!p6@NCOA7!0.64!3.84!NCOA7;;chr2:231191875..231191918,+!p1@SP140L!0.63!37.47!SP140L;;chr9:139294614..139294633,-!p@chr9:139294614..139294633,-!0.63!23.97!SNAPC4;;chr19:44952635..44952668,-!p1@ZNF229!0.63!19.07!ZNF229;;chr2:66662249..66662267,+!p2@MEIS1!0.63!14.70!MEIS1;;chr19:12721790..12721810,+!p2@ZNF791!0.63!10.33!ZNF791;;chr11:65687243..65687276,+!p8@DRAP1!0.63!4.63!DRAP1;;chr16:67198633..67198671,+!p1@HSF4!0.63!3.31!HSF4;;chr18:19749353..19749367,+!p4@GATA6!0.63!3.31!GATA6;;chr7:1577076..1577095,+!p5@MAFK!0.63!3.31!MAFK;;chr1:151032860..151032918,+!p1@MLLT11!0.62!45.02!MLLT11;;chr8:182424..182462,+!p1@ZNF596!0.62!9.40!ZNF596;;chr5:139487608..139487663,+!p3@PURA!0.62!7.68!PURA;;chr9:4299959..4299974,-!p4@GLIS3!0.62!5.43!GLIS3;;chr7:99156011..99156036,+!p7@ZNF655!0.62!3.84!ZNF655;;chr9:14314476..14314487,-!p9@NFIB!0.62!3.18!NFIB;;chr19:22193731..22193751,-!p1@ZNF208!0.62!3.18!ZNF208;;chr21:30671690..30671762,+!p2@BACH1!0.61!12.18!BACH1;;chr19:52391147..52391218,-!p1@ZNF577!0.61!10.99!ZNF577;;chr8:72756063..72756125,-!p1@MSC!0.61!7.02!MSC;;chr19:44598560..44598576,+!p3@ZNF224!0.61!5.43!ZNF224;;chr7:106809470..106809481,+!p2@HBP1!0.61!4.63!HBP1;;chr1:170633262..170633285,+!p3@PRRX1!0.61!3.58!PRRX1;;chr1:170632115..170632136,+!p9@PRRX1!0.61!3.05!PRRX1;;chr8:93074848..93074871,-!p3@RUNX1T1!0.61!3.05!RUNX1T1;;chrX:153305787..1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NF554;;chr4:47916613..47916640,-!p3@NFXL1!0.26!4.10!NFXL1;;chr7:99613250..99613264,+!p2@ZKSCAN1!0.26!4.10!ZKSCAN1;;chr17:46655730..46655791,-!p1@HOXB4!0.26!3.31!HOXB4;;chr3:114819124..114819200,-!p3@ZBTB20!0.26!3.05!ZBTB20;;chr7:99613237..99613248,+!p3@ZKSCAN1!0.26!2.78!ZKSCAN1;;chr18:56532100..56532130,+!p1@ZNF532!0.26!2.25!ZNF532;;chr19:21324863..21324874,+!p2@ZNF431!0.26!2.12!ZNF431;;chr10:97890262..97890298,+!p4@ZNF518A!0.26!2.12!ZNF518A;;chr10:43932553..43932571,+!p2@ZNF487P!0.26!1.99!ZNF487P;;chr18:3451584..3451606,+!p12@TGIF1!0.26!1.99!TGIF1;;chr19:3572908..3572917,+!p3@HMG20B!0.26!1.99!HMG20B;;chr7:148823485..148823510,+!p4@ZNF398!0.26!1.85!ZNF398;;chr2:208030299..208030332,-!p6@KLF7!0.26!1.85!KLF7;;chr6:1389789..1389821,+!p1@FOXF2!0.26!1.46!FOXF2;;chr15:96869114..96869160,+!p11@NR2F2!0.26!1.46!NR2F2;;chr15:37391588..37391604,-!p11@MEIS2!0.26!1.32!MEIS2;;chr15:77713095..77713113,+!p5@HMG20A!0.26!1.19!HMG20A;;chr2:231084820..231084836,-!p5@SP110!0.26!1.06!SP110;;chr14:61116168..61116180,-!p2@SIX1!0.26!1.06!SIX1;;chr6:43140149..43140177,+!p8@SRF!0.26!0.93!SRF;;chr8:128748470..128748487,+!p1@MYC!0.25!179.68!MYC;;chr9:33290491..33290564,+!p1@NFX1!0.25!58.52!NFX1;;chr8:128748308..128748324,+!p2@MYC!0.25!43.96!MYC;;chr19:19932513..19932569,-!p1@ZNF506!0.25!30.19!ZNF506;;chr19:9695169..9695188,-!p1@ZNF121!0.25!27.94!ZNF121;;chr16:69599861..69599885,+!p1@NFAT5!0.25!25.95!NFAT5;;chr9:129567282..129567353,+!p1@ZBTB43!0.25!20.52!ZBTB43;;chr1:197170394..197170444,-!p@chr1:197170394..197170444,-!0.25!16.82!ZBTB41;;chr18:32820990..32821031,+!p1@ZNF397!0.25!15.49!ZNF397;;chr19:52490043..52490113,-!p1@ZNF350!0.25!12.05!ZNF350;;chr2:42795839..42795887,+!p2@MTA3!0.25!10.20!MTA3;;chr19:21688387..21688432,+!p1@ZNF429!0.25!9.14!ZNF429;;chr12:80084303..80084332,-!p1@PAWR!0.25!8.87!PAWR;;chr11:46722560..46722595,+!p1@ZNF408!0.25!7.81!ZNF408;;chr19:36545128..36545203,-!p1@THAP8!0.25!6.75!THAP8;;chr3:150126759..150126784,+!p2@TSC22D2!0.25!6.62!TSC22D2;;chr8:128750654..128750793,+!p3@MYC!0.25!5.83!MYC;;chrX:134477924..134477988,-!p1@ZNF75D!0.25!5.30!ZNF75D;;chr13:20357110..20357121,-!p2@PSPC1!0.25!3.58!PSPC1;;chr7:99102267..99102304,+!p2@ZKSCAN5!0.25!3.05!ZKSCAN5;;chr19:52408285..52408310,-!p3@ZNF649!0.25!3.05!ZNF649;;chr1:91487516..91487528,-!p4@ZNF644!0.25!2.65!ZNF644;;chr19:36391434..36391450,-!p1@NFKBID!0.25!2.38!NFKBID;;chr18:3449527..3449582,+!p6@TGIF1!0.25!2.25!TGIF1;;chr9:14314106..14314119,-!p5@NFIB!0.25!2.12!NFIB;;chr12:498671..498693,-!p4@KDM5A!0.25!1.99!KDM5A;;chr19:12476443..12476467,-!p1@ZNF442!0.25!1.85!ZNF442;;chr19:44331461..44331482,+!p3@ZNF283!0.25!1.85!ZNF283;;chr3:150126101..150126118,+!p6@TSC22D2!0.25!1.85!TSC22D2;;chr6:144329531..144329546,-!p5@PLAGL1!0.25!1.72!PLAGL1;;chr8:145980968..145980996,-!p2@ZNF251!0.25!1.59!ZNF251;;chr1:41157671..41157695,+!p6@NFYC!0.25!1.46!NFYC;;chr14:62213827..62213853,+!p6@HIF1A!0.25!1.46!HIF1A;;chr3:183415653..183415664,+!p2@YEATS2!0.25!1.46!YEATS2;;chr19:52552009..52552023,-!p2@ZNF432!0.25!1.32!ZNF432;;chr5:88179518..88179569,-!p5@MEF2C!0.25!1.32!MEF2C;;chr11:67007611..67007622,+!p6@KDM2A!0.25!1.32!KDM2A;;chr9:88969287..88969297,-!p3@ZCCHC6!0.25!1.32!ZCCHC6;;chrX:24167800..24167811,+!p3@ZFX!0.25!1.19!ZFX;;chr8:72756023..72756055,-!p6@MSC!0.25!1.19!MSC;;chr15:96869222..96869251,+!p18@NR2F2!0.25!1.06!NR2F2;;chr10:35416125..35416138,+!p10@CREM!0.25!1.06!CREM;;chr10:44144240..44144252,-!p4@ZNF32!0.25!1.06!ZNF32;;chr10:44144219..44144230,-!p5@ZNF32!0.25!0.93!ZNF32;;chr10:131762504..131762555,-!p1@EBF3!0.25!0.79!EBF3;;chr10:131762589..131762601,-!p3@EBF3!0.25!0.79!EBF3;;chr11:46333934..46333963,+!p5@CREB3L1!0.25!0.79!CREB3L1;;chr11:65668011..65668020,-!p3@FOSL1!0.25!0.79!FOSL1;;chr11:8040739..8040815,+!p4@TUB!0.25!0.79!TUB;;chr12:57917037..57917052,+!p9@MBD6!0.25!0.79!MBD6;;chr14:69260437..69260442,-!p10@ZFP36L1!0.25!0.79!ZFP36L1;;chr5:158527104..158527135,-!p4@EBF1!0.25!0.79!EBF1;;chr5:158527139..158527161,-!p5@EBF1!0.25!0.79!EBF1;;chr6:10415263..10415274,-!p8@TFAP2A!0.25!0.79!TFAP2A;;chr6:85473227..85473243,-!p5@TBX18!0.25!0.79!TBX18;;
@@ Line 38: / Line 43: @@
 |fonse_treatment_closure=
 |has_quality=
+|hg19bam=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.fractionation.hCAGE/Fibroblast%2520-%2520Aortic%2520Adventitial%252c%2520donor2%2520%2528nuclear%2520fraction%2529.CNhs12581.14332-155F3.hg19.nobarcode.bam
+|hg19ctss=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.fractionation.hCAGE/Fibroblast%2520-%2520Aortic%2520Adventitial%252c%2520donor2%2520%2528nuclear%2520fraction%2529.CNhs12581.14332-155F3.hg19.ctss.bed.gz
+|hg19fasta=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.fractionation.hCAGE/Fibroblast%2520-%2520Aortic%2520Adventitial%252c%2520donor2%2520%2528nuclear%2520fraction%2529.CNhs12581.14332-155F3.hg19.nobarcode.rdna.fa.gz
+|hg38bam=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.fractionation.hCAGE/Fibroblast%2520-%2520Aortic%2520Adventitial%252c%2520donor2%2520%2528nuclear%2520fraction%2529.CNhs12581.14332-155F3.hg38.nobarcode.bam
+|hg38ctss=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.fractionation.hCAGE/Fibroblast%2520-%2520Aortic%2520Adventitial%252c%2520donor2%2520%2528nuclear%2520fraction%2529.CNhs12581.14332-155F3.hg38.nobarcode.ctss.bed.gz
 |id=FF:14332-155F3
 |is_a=EFO:0002091;;FF:0000666
 |is_obsolete=
+|library_id=CNhs12581
+|library_id_phase_based=2:CNhs12581
+|microRNAs=
+|microRNAs_nn=
+|microRNAs_nonnovel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer/#/human#cage;sample;14332
+|microRNAs_nonnovel_srna=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2016/vis_viewer/#/human#srna;sample;SRhi10010.GTGGCC.14332
+|microRNAs_novel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer_novel/#/human#cage;sample;14332
+|microRNAs_novel_srna=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2016/vis_viewer_novel/#/human#srna;sample;SRhi10010.GTGGCC.14332
 |name=Fibroblast - Aortic Adventitial, donor2 (nuclear fraction)
 |namespace=FANTOM5
@@ Line 46: / Line 64: @@
 |profile_cagescan=,,,
 |profile_hcage=CNhs12581,LSID917,release012,COMPLETED
-|profile_rnaseq=,,,
+|profile_rnaseq=
 |profile_srnaseq=SRhi10010,,,
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@@ Line 62: / Line 81: @@
 |rna_tube_id=155F3
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+|rnaseq_library_id=SRhi10010.GTGGCC
 |sample_age=19
 |sample_category=fractionations and perturbations
@@ Line 85: / Line 105: @@
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 |xref=
+|zenbu_report=https://fantom.gsc.riken.jp/zenbu/reports/#miRNA_expression_atlas_human;search_select_hide=table111:FF:14332-155F3;search_select_hide=table117:FF:14332-155F3
 }}

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FF:14332-155F3: Difference between revisions

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Latest revision as of 19:07, 4 June 2020

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	Mozilla Cavendish skin modified by DaSch for the Web Community Wiki GitHub project page – Report a bug – Skin version: 2.6.0