FFCP PHASE1:Hg19::chr11:56949421..56949438,+: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=219527 | |EntrezGene=219527 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=32324 | |HGNC=32324 | ||
|TSSclassifier=strong | |||
|UniProt=Q6ZSA7 | |UniProt=Q6ZSA7 | ||
|association_with_transcript=42bp_to_BC150572_5end | |association_with_transcript=42bp_to_BC150572_5end | ||
|cluster_id=chr11:56949421..56949438,+ | |||
|description=CAGE_peak_1_at_LRRC55_5end | |description=CAGE_peak_1_at_LRRC55_5end | ||
|id=chr11:56949421..56949438,+ | |id=chr11:56949421..56949438,+ | ||
|ontology_enrichment_celltype= | |ontology_enrichment_celltype= | ||
|ontology_enrichment_celltype_v019=CL:0002262;1.10e-15;2!CL:1000398;1.10e-15;2 | |||
|ontology_enrichment_celltype_v019_2=CL:0002262,1.15e-15,2;CL:1000398,1.15e-15,2 | |||
|ontology_enrichment_development_v019=UBERON:0006241;4.01e-23;3!UBERON:0003057;4.01e-23;3!UBERON:0001045;1.47e-08;1!UBERON:0006298;1.47e-08;1!UBERON:0003124;1.47e-08;1 | |||
|ontology_enrichment_disease= | |ontology_enrichment_disease= | ||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0007023!6.62e-32!115;UBERON:0001049!6.27e-19!57;UBERON:0005068!6.27e-19!57;UBERON:0006241!6.27e-19!57;UBERON:0007135!6.27e-19!57;UBERON:0001017!2.93e-16!82;UBERON:0002619!2.69e-15!22;UBERON:0005743!4.18e-15!86;UBERON:0001950!5.95e-15!20;UBERON:0000955!6.37e-15!69;UBERON:0006238!6.37e-15!69;UBERON:0001893!1.96e-14!34;UBERON:0001869!5.93e-14!32;UBERON:0000073!7.21e-14!94;UBERON:0001016!7.21e-14!94;UBERON:0002791!2.12e-13!33;UBERON:0002616!2.57e-13!59;UBERON:0000956!4.41e-13!25;UBERON:0000203!4.41e-13!25;UBERON:0003075!4.85e-13!86;UBERON:0007284!4.85e-13!86;UBERON:0002780!8.31e-13!41;UBERON:0001890!8.31e-13!41;UBERON:0006240!8.31e-13!41;UBERON:0003080!2.18e-12!42;UBERON:0002346!4.19e-12!90;UBERON:0000153!8.75e-12!129;UBERON:0007811!8.75e-12!129;UBERON:0002020!1.96e-11!34;UBERON:0003528!1.96e-11!34;UBERON:0000477!3.49e-11!286;UBERON:0004111!5.39e-11!241;UBERON:0000025!1.07e-09!194;UBERON:0000033!1.73e-09!123;UBERON:0004121!8.37e-09!169;UBERON:0000481!1.76e-08!347;UBERON:0000924!2.24e-08!173;UBERON:0006601!2.24e-08!173;UBERON:0003076!4.26e-08!15;UBERON:0003057!4.26e-08!15;UBERON:0002240!9.04e-08!3;UBERON:0000475!1.11e-07!365;UBERON:0000064!1.88e-07!219;UBERON:0001896!4.31e-07!3;UBERON:0005290!4.31e-07!3;UBERON:0010096!4.31e-07!3;UBERON:0003056!4.33e-07!61 | |ontology_enrichment_uberon=UBERON:0007023!6.62e-32!115;UBERON:0001049!6.27e-19!57;UBERON:0005068!6.27e-19!57;UBERON:0006241!6.27e-19!57;UBERON:0007135!6.27e-19!57;UBERON:0001017!2.93e-16!82;UBERON:0002619!2.69e-15!22;UBERON:0005743!4.18e-15!86;UBERON:0001950!5.95e-15!20;UBERON:0000955!6.37e-15!69;UBERON:0006238!6.37e-15!69;UBERON:0001893!1.96e-14!34;UBERON:0001869!5.93e-14!32;UBERON:0000073!7.21e-14!94;UBERON:0001016!7.21e-14!94;UBERON:0002791!2.12e-13!33;UBERON:0002616!2.57e-13!59;UBERON:0000956!4.41e-13!25;UBERON:0000203!4.41e-13!25;UBERON:0003075!4.85e-13!86;UBERON:0007284!4.85e-13!86;UBERON:0002780!8.31e-13!41;UBERON:0001890!8.31e-13!41;UBERON:0006240!8.31e-13!41;UBERON:0003080!2.18e-12!42;UBERON:0002346!4.19e-12!90;UBERON:0000153!8.75e-12!129;UBERON:0007811!8.75e-12!129;UBERON:0002020!1.96e-11!34;UBERON:0003528!1.96e-11!34;UBERON:0000477!3.49e-11!286;UBERON:0004111!5.39e-11!241;UBERON:0000025!1.07e-09!194;UBERON:0000033!1.73e-09!123;UBERON:0004121!8.37e-09!169;UBERON:0000481!1.76e-08!347;UBERON:0000924!2.24e-08!173;UBERON:0006601!2.24e-08!173;UBERON:0003076!4.26e-08!15;UBERON:0003057!4.26e-08!15;UBERON:0002240!9.04e-08!3;UBERON:0000475!1.11e-07!365;UBERON:0000064!1.88e-07!219;UBERON:0001896!4.31e-07!3;UBERON:0005290!4.31e-07!3;UBERON:0010096!4.31e-07!3;UBERON:0003056!4.33e-07!61 | ||
|ontology_enrichment_uberon_v019=UBERON:0002240;4.01e-23;3!UBERON:0005174;4.01e-23;3!UBERON:0001137;4.01e-23;3!UBERON:0001281;1.10e-15;2!UBERON:0003497;1.10e-15;2!UBERON:0003909;1.10e-15;2!UBERON:0003835;1.10e-15;2!UBERON:0002114;3.19e-11;2!UBERON:0001280;9.12e-11;3!UBERON:0004647;9.12e-11;3!UBERON:0001896;1.39e-10;3!UBERON:0005290;1.39e-10;3!UBERON:0000922;2.37e-10;49!UBERON:0000029;3.31e-09;1!UBERON:0001154;1.47e-08;1!UBERON:0001736;1.47e-08;1!UBERON:0001153;1.47e-08;1!UBERON:0009854;1.47e-08;1!UBERON:0002465;2.66e-07;10!UBERON:0002108;4.58e-07;4!UBERON:0000160;8.53e-07;17 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002240,3.87e-23,3;UBERON:0005174,3.87e-23,3;UBERON:0001137,3.87e-23,3;UBERON:0001281,1.15e-15,2;UBERON:0003497,1.15e-15,2;UBERON:0003909,1.15e-15,2;UBERON:0003835,1.15e-15,2;UBERON:0003076,4.41e-12,15;UBERON:0003057,4.41e-12,15;UBERON:0001049,1.90e-11,56;UBERON:0005068,1.90e-11,56;UBERON:0006241,1.90e-11,56;UBERON:0007135,1.90e-11,56;UBERON:0002114,3.44e-11,2;UBERON:0001280,9.35e-11,3;UBERON:0004647,9.35e-11,3;UBERON:0005171,9.35e-11,3;UBERON:0001896,2.26e-10,3;UBERON:0005290,2.26e-10,3;UBERON:0010096,2.26e-10,3;UBERON:0011216,2.11e-09,223;UBERON:0000029,3.31e-09,1;UBERON:0001017,5.48e-09,81;UBERON:0001736,1.05e-08,1;UBERON:0006298,1.05e-08,1;UBERON:0001154,1.13e-08,1;UBERON:0001153,1.13e-08,1;UBERON:0001045,1.13e-08,1;UBERON:0001016,6.33e-08,89;UBERON:0004111,1.46e-07,240;UBERON:0003075,2.37e-07,82;UBERON:0007284,2.37e-07,82;UBERON:0002465,2.58e-07,10;UBERON:0007023,3.77e-07,114;UBERON:0002108,4.79e-07,4;UBERON:0002346,6.12e-07,86;UBERON:0000160,7.59e-07,17 | |||
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| ||
|short_description=p1@LRRC55 | |short_description=p1@LRRC55 | ||
}} | }} |
Latest revision as of 08:32, 18 September 2015
Short description: | p1@LRRC55 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_1_at_LRRC55_5end |
Coexpression cluster: | NA |
Association with transcript: | 42bp_to_BC150572_5end |
EntrezGene: | LRRC55 |
HGNC: | 32324 |
UniProt: | Q6ZSA7 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
endothelial cell of sinusoid | 1.15e-15 | 2 |
endothelial cell of hepatic sinusoid | 1.15e-15 | 2 |
Ontology term | p-value | n |
---|---|---|
spinal cord | 3.87e-23 | 3 |
dorsal region element | 3.87e-23 | 3 |
dorsum | 3.87e-23 | 3 |
hepatic sinusoid | 1.15e-15 | 2 |
abdomen blood vessel | 1.15e-15 | 2 |
sinusoid | 1.15e-15 | 2 |
abdominal segment blood vessel | 1.15e-15 | 2 |
posterior neural tube | 4.41e-12 | 15 |
chordal neural plate | 4.41e-12 | 15 |
neural tube | 1.90e-11 | 56 |
neural rod | 1.90e-11 | 56 |
future spinal cord | 1.90e-11 | 56 |
neural keel | 1.90e-11 | 56 |
duodenum | 3.44e-11 | 2 |
liver parenchyma | 9.35e-11 | 3 |
liver lobule | 9.35e-11 | 3 |
hepatic duct | 9.35e-11 | 3 |
medulla oblongata | 2.26e-10 | 3 |
myelencephalon | 2.26e-10 | 3 |
future myelencephalon | 2.26e-10 | 3 |
organ system subdivision | 2.11e-09 | 223 |
lymph node | 3.31e-09 | 1 |
central nervous system | 5.48e-09 | 81 |
submandibular gland | 1.05e-08 | 1 |
submandibular gland primordium | 1.05e-08 | 1 |
vermiform appendix | 1.13e-08 | 1 |
caecum | 1.13e-08 | 1 |
midgut | 1.13e-08 | 1 |
nervous system | 6.33e-08 | 89 |
anatomical conduit | 1.46e-07 | 240 |
neural plate | 2.37e-07 | 82 |
presumptive neural plate | 2.37e-07 | 82 |
lymphoid system | 2.58e-07 | 10 |
adult organism | 3.77e-07 | 114 |
small intestine | 4.79e-07 | 4 |
neurectoderm | 6.12e-07 | 86 |
intestine | 7.59e-07 | 17 |