FFCP PHASE1:Hg19::chr19:40854508..40854519,+: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=23646 | |EntrezGene=23646 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=17158 | |HGNC=17158 | ||
|TSSclassifier=strong | |||
|UniProt=E2QRD3 | |UniProt=E2QRD3 | ||
|association_with_transcript=17bp_to_ENST00000392032_5end | |association_with_transcript=17bp_to_ENST00000392032_5end | ||
|cluster_id=chr19:40854508..40854519,+ | |||
|description=CAGE_peak_5_at_PLD3_5end | |description=CAGE_peak_5_at_PLD3_5end | ||
|id=chr19:40854508..40854519,+ | |id=chr19:40854508..40854519,+ | ||
|ontology_enrichment_celltype=CL:0002057!1.52e-13!42;CL:0000860!1.58e-11!45;CL:0002194!7.21e-08!63;CL:0000576!7.21e-08!63;CL:0000040!7.21e-08!63;CL:0000559!7.21e-08!63;CL:0000766!7.28e-08!76;CL:0002009!3.08e-07!65;CL:0000839!5.97e-07!70 | |ontology_enrichment_celltype=CL:0002057!1.52e-13!42;CL:0000860!1.58e-11!45;CL:0002194!7.21e-08!63;CL:0000576!7.21e-08!63;CL:0000040!7.21e-08!63;CL:0000559!7.21e-08!63;CL:0000766!7.28e-08!76;CL:0002009!3.08e-07!65;CL:0000839!5.97e-07!70 | ||
|ontology_enrichment_celltype_v019=CL:0000860;2.46e-10;33!CL:0002057;2.46e-10;33!CL:0000576;5.43e-08;48!CL:0000473;9.80e-08;39!CL:0000234;9.80e-08;39 | |||
|ontology_enrichment_celltype_v019_2=CL:0000860,1.06e-13,42;CL:0002057,1.06e-13,42;CL:0000473,3.89e-12,48;CL:0000234,3.89e-12,48;CL:0000766,3.84e-09,72;CL:0002194,4.83e-09,59;CL:0000576,4.83e-09,59;CL:0000040,4.83e-09,59;CL:0000559,4.83e-09,59;CL:0002009,2.49e-08,61;CL:0000839,8.03e-08,66;CL:0000557,1.62e-07,67 | |||
|ontology_enrichment_development_v019=CL:0002057;8.26e-10;42 | |||
|ontology_enrichment_disease= | |ontology_enrichment_disease= | ||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0007023!2.59e-15!115;UBERON:0001049!5.24e-12!57;UBERON:0005068!5.24e-12!57;UBERON:0006241!5.24e-12!57;UBERON:0007135!5.24e-12!57;UBERON:0002616!8.07e-12!59;UBERON:0005743!3.53e-10!86;UBERON:0000073!6.83e-10!94;UBERON:0001016!6.83e-10!94;UBERON:0001017!8.71e-10!82;UBERON:0000955!1.32e-09!69;UBERON:0006238!1.32e-09!69;UBERON:0003075!1.41e-09!86;UBERON:0007284!1.41e-09!86;UBERON:0002346!3.65e-09!90;UBERON:0002780!7.05e-09!41;UBERON:0001890!7.05e-09!41;UBERON:0006240!7.05e-09!41;UBERON:0003080!3.78e-08!42;UBERON:0000923!3.86e-08!604;UBERON:0005291!3.86e-08!604;UBERON:0006598!3.86e-08!604;UBERON:0002532!3.86e-08!604;UBERON:0000468!4.12e-08!659;UBERON:0000467!6.58e-08!625;UBERON:0002050!6.76e-08!605;UBERON:0005423!6.76e-08!605;UBERON:0000480!7.02e-08!626;UBERON:0000922!2.64e-07!612 | |ontology_enrichment_uberon=UBERON:0007023!2.59e-15!115;UBERON:0001049!5.24e-12!57;UBERON:0005068!5.24e-12!57;UBERON:0006241!5.24e-12!57;UBERON:0007135!5.24e-12!57;UBERON:0002616!8.07e-12!59;UBERON:0005743!3.53e-10!86;UBERON:0000073!6.83e-10!94;UBERON:0001016!6.83e-10!94;UBERON:0001017!8.71e-10!82;UBERON:0000955!1.32e-09!69;UBERON:0006238!1.32e-09!69;UBERON:0003075!1.41e-09!86;UBERON:0007284!1.41e-09!86;UBERON:0002346!3.65e-09!90;UBERON:0002780!7.05e-09!41;UBERON:0001890!7.05e-09!41;UBERON:0006240!7.05e-09!41;UBERON:0003080!3.78e-08!42;UBERON:0000923!3.86e-08!604;UBERON:0005291!3.86e-08!604;UBERON:0006598!3.86e-08!604;UBERON:0002532!3.86e-08!604;UBERON:0000468!4.12e-08!659;UBERON:0000467!6.58e-08!625;UBERON:0002050!6.76e-08!605;UBERON:0005423!6.76e-08!605;UBERON:0000480!7.02e-08!626;UBERON:0000922!2.64e-07!612 | ||
|ontology_enrichment_uberon_v019=UBERON:0000073;4.42e-07;53!UBERON:0002616;4.42e-07;53!UBERON:0002780;9.21e-07;41!UBERON:0001890;9.21e-07;41 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0007023,1.11e-13,114;UBERON:0001049,5.12e-13,56;UBERON:0005068,5.12e-13,56;UBERON:0006241,5.12e-13,56;UBERON:0007135,5.12e-13,56;UBERON:0000073,8.78e-13,53;UBERON:0002616,8.78e-13,53;UBERON:0001017,3.09e-10,81;UBERON:0001016,5.50e-10,89;UBERON:0000955,1.29e-09,68;UBERON:0006238,1.29e-09,68;UBERON:0002780,3.99e-09,41;UBERON:0001890,3.99e-09,41;UBERON:0003080,3.99e-09,41;UBERON:0006240,3.99e-09,41;UBERON:0003075,4.30e-09,82;UBERON:0007284,4.30e-09,82;UBERON:0002346,2.38e-08,86;UBERON:0000923,2.69e-08,560;UBERON:0010316,2.69e-08,560;UBERON:0005291,2.69e-08,560;UBERON:0006598,2.69e-08,560;UBERON:0010317,2.69e-08,560;UBERON:0002532,2.69e-08,560;UBERON:0002050,7.93e-08,564;UBERON:0002390,2.28e-07,98;UBERON:0003061,2.28e-07,98;UBERON:0005423,3.92e-07,581;UBERON:0001474,4.28e-07,82 | |||
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| ||
|short_description=p5@PLD3 | |short_description=p5@PLD3 | ||
}} | }} |
Latest revision as of 01:43, 18 September 2015
Short description: | p5@PLD3 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_5_at_PLD3_5end |
Coexpression cluster: | NA |
Association with transcript: | 17bp_to_ENST00000392032_5end |
EntrezGene: | PLD3 |
HGNC: | 17158 |
UniProt: | E2QRD3 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
classical monocyte | 1.06e-13 | 42 |
CD14-positive, CD16-negative classical monocyte | 1.06e-13 | 42 |
defensive cell | 3.89e-12 | 48 |
phagocyte | 3.89e-12 | 48 |
myeloid leukocyte | 3.84e-09 | 72 |
monopoietic cell | 4.83e-09 | 59 |
monocyte | 4.83e-09 | 59 |
monoblast | 4.83e-09 | 59 |
promonocyte | 4.83e-09 | 59 |
macrophage dendritic cell progenitor | 2.49e-08 | 61 |
myeloid lineage restricted progenitor cell | 8.03e-08 | 66 |
granulocyte monocyte progenitor cell | 1.62e-07 | 67 |
Ontology term | p-value | n |
---|---|---|
adult organism | 1.11e-13 | 114 |
neural tube | 5.12e-13 | 56 |
neural rod | 5.12e-13 | 56 |
future spinal cord | 5.12e-13 | 56 |
neural keel | 5.12e-13 | 56 |
regional part of nervous system | 8.78e-13 | 53 |
regional part of brain | 8.78e-13 | 53 |
central nervous system | 3.09e-10 | 81 |
nervous system | 5.50e-10 | 89 |
brain | 1.29e-09 | 68 |
future brain | 1.29e-09 | 68 |
regional part of forebrain | 3.99e-09 | 41 |
forebrain | 3.99e-09 | 41 |
anterior neural tube | 3.99e-09 | 41 |
future forebrain | 3.99e-09 | 41 |
neural plate | 4.30e-09 | 82 |
presumptive neural plate | 4.30e-09 | 82 |
neurectoderm | 2.38e-08 | 86 |
germ layer | 2.69e-08 | 560 |
germ layer / neural crest | 2.69e-08 | 560 |
embryonic tissue | 2.69e-08 | 560 |
presumptive structure | 2.69e-08 | 560 |
germ layer / neural crest derived structure | 2.69e-08 | 560 |
epiblast (generic) | 2.69e-08 | 560 |
embryonic structure | 7.93e-08 | 564 |
hematopoietic system | 2.28e-07 | 98 |
blood island | 2.28e-07 | 98 |
developing anatomical structure | 3.92e-07 | 581 |
bone element | 4.28e-07 | 82 |