FFCP PHASE1:Hg19::chr6:32908792..32908830,-: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=3109 | |EntrezGene=3109 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=4935 | |HGNC=4935 | ||
|TSSclassifier=strong | |||
|UniProt=A2AAT3,Q59F83,P28068 | |UniProt=A2AAT3,Q59F83,P28068 | ||
|association_with_transcript=0bp_to_ENST00000446948,uc003ocj.1,uc003ocl.1,uc011dql.1_5end | |association_with_transcript=0bp_to_ENST00000446948,uc003ocj.1,uc003ocl.1,uc011dql.1_5end | ||
|cluster_id=chr6:32908792..32908830,- | |||
|coexpression_cluster_id=C691 | |||
|description=CAGE_peak_1_at_HLA-DMB_5end | |description=CAGE_peak_1_at_HLA-DMB_5end | ||
|id=chr6:32908792..32908830,- | |id=chr6:32908792..32908830,- | ||
|ontology_enrichment_celltype=CL:0000738!1.10e-51!140;CL:0002087!2.80e-49!119;CL:0002031!7.14e-44!124;CL:0000037!4.96e-42!172;CL:0000566!4.96e-42!172;CL:0000988!3.32e-40!182;CL:0002032!2.86e-39!165;CL:0000837!2.86e-39!165;CL:0002009!1.20e-29!65;CL:0002194!3.12e-28!63;CL:0000576!3.12e-28!63;CL:0000040!3.12e-28!63;CL:0000559!3.12e-28!63;CL:0000557!4.18e-27!71;CL:0002057!9.83e-27!42;CL:0000766!3.47e-26!76;CL:0000860!1.28e-23!45;CL:0000839!1.46e-23!70;CL:0000763!3.38e-20!112;CL:0000049!3.38e-20!112;CL:0000542!2.70e-18!53;CL:0000051!2.70e-18!53;CL:0000838!7.38e-18!52;CL:0000945!9.39e-14!24;CL:0000826!9.39e-14!24;CL:0000236!2.17e-10!14;CL:0000451!1.27e-08!10;CL:0000990!2.07e-07!8 | |ontology_enrichment_celltype=CL:0000738!1.10e-51!140;CL:0002087!2.80e-49!119;CL:0002031!7.14e-44!124;CL:0000037!4.96e-42!172;CL:0000566!4.96e-42!172;CL:0000988!3.32e-40!182;CL:0002032!2.86e-39!165;CL:0000837!2.86e-39!165;CL:0002009!1.20e-29!65;CL:0002194!3.12e-28!63;CL:0000576!3.12e-28!63;CL:0000040!3.12e-28!63;CL:0000559!3.12e-28!63;CL:0000557!4.18e-27!71;CL:0002057!9.83e-27!42;CL:0000766!3.47e-26!76;CL:0000860!1.28e-23!45;CL:0000839!1.46e-23!70;CL:0000763!3.38e-20!112;CL:0000049!3.38e-20!112;CL:0000542!2.70e-18!53;CL:0000051!2.70e-18!53;CL:0000838!7.38e-18!52;CL:0000945!9.39e-14!24;CL:0000826!9.39e-14!24;CL:0000236!2.17e-10!14;CL:0000451!1.27e-08!10;CL:0000990!2.07e-07!8 | ||
|ontology_enrichment_celltype_v019=CL:0000473;1.05e-22;39!CL:0000234;1.05e-22;39!CL:0000860;3.01e-22;33!CL:0002057;3.01e-22;33!CL:0000576;2.55e-19;48!CL:0002087;5.57e-16;104!CL:0000945;1.40e-15;24!CL:0000766;1.88e-13;69!CL:0000738;2.04e-13;136!CL:0000542;9.24e-13;53!CL:0000236;3.67e-11;13!CL:0000451;1.17e-09;10!CL:0000990;2.83e-08;8!CL:0000988;6.64e-08;177!CL:0000763;9.76e-07;100 | |||
|ontology_enrichment_celltype_v019_2=CL:0000738,9.84e-60,136;CL:0002087,5.27e-58,115;CL:0002031,9.17e-51,120;CL:0000037,6.13e-48,168;CL:0000988,3.09e-46,177;CL:0002032,1.28e-44,161;CL:0000837,1.28e-44,161;CL:0002009,7.16e-37,61;CL:0000473,2.32e-35,48;CL:0000234,2.32e-35,48;CL:0002194,3.31e-35,59;CL:0000576,3.31e-35,59;CL:0000040,3.31e-35,59;CL:0000559,3.31e-35,59;CL:0000557,2.51e-32,67;CL:0000766,2.73e-31,72;CL:0000860,2.05e-30,42;CL:0002057,2.05e-30,42;CL:0000839,1.97e-28,66;CL:0000763,2.05e-23,108;CL:0000049,2.05e-23,108;CL:0000542,7.09e-20,53;CL:0000051,7.09e-20,53;CL:0000838,2.23e-19,52;CL:0000945,1.58e-15,24;CL:0000826,1.58e-15,24;CL:0000236,1.12e-11,14;CL:0000451,1.18e-09,10;CL:0000990,2.89e-08,8;CL:0002393,2.17e-07,9;CL:0002397,2.17e-07,9 | |||
|ontology_enrichment_development_v019=CL:0002057;5.59e-22;42!CL:0000051;9.24e-13;53!CL:0000049;3.38e-07;108 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0002390!2.40e-34!102;UBERON:0003061!2.40e-34!102;UBERON:0002193!1.91e-32!112;UBERON:0007023!1.28e-25!115;UBERON:0002371!2.74e-24!80;UBERON:0001474!3.28e-21!86;UBERON:0002405!5.20e-19!115;UBERON:0004765!9.43e-15!101;UBERON:0001434!9.43e-15!101;UBERON:0001049!1.20e-08!57;UBERON:0005068!1.20e-08!57;UBERON:0006241!1.20e-08!57;UBERON:0007135!1.20e-08!57;UBERON:0000178!2.51e-08!15;UBERON:0000179!2.51e-08!15;UBERON:0000463!2.51e-08!15;UBERON:0003081!8.01e-07!216 | |||
|ontology_enrichment_uberon_v019=UBERON:0000178;2.62e-09;15!UBERON:0000179;2.62e-09;15!UBERON:0000463;2.62e-09;15!UBERON:0007023;8.15e-08;114!UBERON:0002390;3.37e-07;32 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002390,1.93e-40,98;UBERON:0003061,1.93e-40,98;UBERON:0002193,1.87e-35,108;UBERON:0002371,8.51e-29,76;UBERON:0007023,1.68e-28,114;UBERON:0002405,3.01e-27,93;UBERON:0001474,1.69e-24,82;UBERON:0004765,8.79e-20,90;UBERON:0001434,3.71e-16,100;UBERON:0003081,1.11e-09,203;UBERON:0000178,2.58e-09,15;UBERON:0000179,2.58e-09,15;UBERON:0000463,2.58e-09,15;UBERON:0001049,2.21e-07,56;UBERON:0005068,2.21e-07,56;UBERON:0006241,2.21e-07,56;UBERON:0007135,2.21e-07,56 | |||
|phase1_expression=0,0.214100523890983,0,0,0,0,0,0,0,0,0,0,0,0,0,5.3786011716142,0,0,0,4.30923703268758,0,13.4785530235578,3.14859585844162,0.821246550437305,0.502170558379211,23.2296753473772,29.2278098441807,31.7204448694127,86.9335051836078,54.119945131707,84.2199710839453,0,0,0,37.1842562785448,21.3253848731132,45.5080680969013,89.7472561821642,77.2096122760045,74.0007069141055,386.702024012349,356.283032620878,326.09066862488,114.137617441958,116.385790656153,99.4594650870046,112.960511936163,113.893504982046,114.591357231188,150.175428792163,150.622495439111,175.233332347442,133.416578445071,118.12369709584,127.300897398681,118.404431572298,112.437333823832,129.665450524814,157.021036786273,129.976255965818,164.948978456153,122.704683669458,148.201497612872,116.359356895426,153.81089647315,108.370577916008,114.599293815186,132.65929525556,128.28479793137,152.466568982992,116.236704505607,147.679332031013,147.787934934893,180.62326979671,152.224678774971,213.01318383651,202.640850588277,200.786505729094,164.422275191113,75.5283770914309,58.4815030965325,71.4216841219719,330.872939587287,299.283958971648,354.024683037695,349.492052281969,307.504118043658,351.173740812189,358.94736592218,315.791792751205,169.056251825506,170.886022106943,183.108876271985,26.4342657158052,28.0254281490768,35.5568514446354,1.180258620683,0.393010762749165,2.46721798799411,0.668745981562712,2.28145586643513,1.4203434172042,7.79306913631645,7.35309015442146,7.9543595018206,7.53215241584312,11.1029584143656,3.97083091149593,5.9827299877544,3.78207180588455,4.69795030235942,2.31842468588042,2.37258501059297,2.67540828089713,0,4.19244567980995,4.59864592322305,3.09264700934367,3.03623630423403,16.565401544853,10.4173352617027,14.2567806667256,21.3816669090437,15.2304067273758,22.4875307794223,20.3628436757855,14.7803039445788,4.03213486449465,4.01160293675261,3.62061009706997,0,0,0,0,0,0.144846518960824,0,0,0,0,0.527008714158756,27.5056058545197,0.364295288292542,0,175.255592573529,177.960591519851,170.319147424666,147.148715196396,133.84680912255,141.525308006564,0,0,0,0,0,0,0.208994966536811,0.258416759169329,0.71153252537342,0.33472061276467,0.402829317109147,1.52054421143703,0.24406205754817,0,2.43042584364528,0,0,0,0,0,0,5.27121669744253,3.87780264148325,0,0,0,0,0,3.54668382198357,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.204154171254893,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.365921118388786,0.530119073285941,0.232387885739037,0.621966330092223,0,0,1.56449532329816,0.643240938192885,0,0,0,0.118306800039844,0,0,0,0,0.237270619111097,0.269662616320329,0.196221465125346,0,0,0,0,0,0,4.91413608338813,10.0434284135839,0,0.491953754172454,0,0,0,0,0.0925884451585296,0,0,0,0.231860809950154,0,0.144366447761074,0.462985512576611,0.380508304469197,0,0,293.24445425009,126.128298910049,185.045797049467,0,0,0,0,0.290633938513962,0,0,0,0.207328115540772,0.720599767084807,0.12624243342638,0.063497894292169,0,1.17217447210047,0,0.205654985406647,0,0.571652865261156,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.325736184293735,0,0,0.301439377059586,0,0.099972991182057,409.872140760812,347.561907271031,255.109066774468,0,0,0,0,0,0.179060963239896,17.3731973189967,11.0337225713079,4.31255149719035,10.5241289749394,1.01637849688985,0,0,4.18790663335872,1.27587750330633,2.99602809578873,0,1.24324654030811,0,0,0.271265023699736,0,0,0,0,0.300946099727719,0,0,0,0,0,0,0,65.1319282287095,67.0871164545898,59.1270670231082,0,0,0,0.248107807818777,0,0,0,0,0.160853921143607,0,0,2.13074070375753,4.59912073677331,0,2.5566283261191,0.362578348774867,0,0,0,0,0.393373244878272,0.902399225814824,2.46449078734127,3.13739907670742,11.6911379722609,7.8108205380728,3.4120015221269,0.170093705276516,0.215915916102139,1.54227252690289,0.270946437543853,2.00675909541941,4.33289664176565,5.81753206250107,1.79099803777743,0,0,0.256450125116389,0,0,10.7162652113631,0.0915694648183434,0.082509499920588,0,0,0,0,0,0,0,0.107420244868274,0,1.44885266607372,0,0,0.192190067365106,0,0.10115778085555,0,0,0,0,0,0,0.18532421910392,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.438450885253763,0,0,0,5.26699946769575,0,0,0,0,0,1.05553817648832,0.329294892959902,0,0,0,0.670302275535787,0,9.22609247612436,0,1.68471475667626,0,0,57.8490274524673,63.4648881928171,49.5593052841521,66.4666653527231,72.8111223362564,64.198857808079,72.3642125899074,61.0706385746588,1.49553699578462,0,0.735120647943095,30.2859175454922,13.1284983808565,0.355709216742071,0,4.59032554295478,22.0231175652222,0,0.324621940274555,16.5670335086941,4.10822422259746,0,0,4.57087800064329,0.963528450622197,17.152975111239,25.9766204991099,1.03051603426729,0.307240764308458,0,0.166849141711909,1.75849285861836,0,0,0,0.33307196799782,0,0,24.6133741176782,0,45.6917875537661,0.568272293612826,0.71623345421307,2.07875276582847,0,6.95903353436409,12.6602474769461,0,8.73460533401826,0,14.5451031423281,42.2714390762656,0,1.94310496754094,14.7701766553283,0,0.179736702294654,0,0.511572370226872,7.20096861149615,50.291449392857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| ||
|short_description=p1@HLA-DMB | |short_description=p1@HLA-DMB | ||
}} | }} |
Latest revision as of 04:30, 18 September 2015
Short description: | p1@HLA-DMB |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_1_at_HLA-DMB_5end |
Coexpression cluster: | C691_Monocytederived_CD14_Macrophage_CD19_Dendritic_immature_Whole |
Association with transcript: | 0bp_to_ENST00000446948, uc003ocj.1, uc003ocl.1, uc011dql.1_5end |
EntrezGene: | HLA-DMB |
HGNC: | 4935 |
UniProt: | A2AAT3Q59F83P28068 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
hematopoietic system | 1.93e-40 | 98 |
blood island | 1.93e-40 | 98 |
hemolymphoid system | 1.87e-35 | 108 |
bone marrow | 8.51e-29 | 76 |
adult organism | 1.68e-28 | 114 |
immune system | 3.01e-27 | 93 |
bone element | 1.69e-24 | 82 |
skeletal element | 8.79e-20 | 90 |
skeletal system | 3.71e-16 | 100 |
lateral plate mesoderm | 1.11e-09 | 203 |
blood | 2.58e-09 | 15 |
haemolymphatic fluid | 2.58e-09 | 15 |
organism substance | 2.58e-09 | 15 |
neural tube | 2.21e-07 | 56 |
neural rod | 2.21e-07 | 56 |
future spinal cord | 2.21e-07 | 56 |
neural keel | 2.21e-07 | 56 |