FF:10544-107H4: Difference between revisions
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{{f5samples | {{f5samples | ||
|ancestors_in_anatomy_facet=UBERON: | |DRA_sample_Accession=CAGE@SAMD00005525 | ||
| | |accession_numbers=CAGE;DRX007975;DRR008847;DRZ000272;DRZ001657;DRZ011622;DRZ013007 | ||
|ancestors_in_anatomy_facet=UBERON:0000468,UBERON:0001723,UBERON:0003343,UBERON:0000033,UBERON:0000974,UBERON:0001007,UBERON:0000344,UBERON:0004121,UBERON:0000064,UBERON:0004119,UBERON:0010314,UBERON:0000062,UBERON:0004111,UBERON:0000475,UBERON:0000061,UBERON:0000465,UBERON:0000481,UBERON:0004923,UBERON:0000161,UBERON:0001444,UBERON:0000477,UBERON:0000467,UBERON:0001062,UBERON:0000480,UBERON:0000020,UBERON:0004785,UBERON:0001032,UBERON:0003729,UBERON:0010317,UBERON:0001555,UBERON:0001004,UBERON:0000153,UBERON:0007811,UBERON:0000165,UBERON:0004456,UBERON:0000166,UBERON:0001033 | |||
|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000548,CL:0000066,CL:0002371,CL:0000076,CL:0000255,CL:0002076,CL:0002251 | |||
|ancestors_in_disease_facet=DOID:4,DOID:162,DOID:14566,DOID:0050687,DOID:7,DOID:305,DOID:1749 | |||
|ancestors_in_ff_facet=FF:0000102,FF:0000003,FF:0000210,FF:0000101,FF:0000001,FF:0100297,FF:0102024,FF:0101120,FF:0102211,FF:0102027,FF:0102709,FF:0100786,FF:0103980,FF:0103981 | |||
|comment= | |comment= | ||
|created_by= | |created_by= | ||
|creation_date= | |creation_date= | ||
|data_phase=2 | |||
|datafreeze_phase=2 | |||
|def= | |def= | ||
|expression_enrichment_score=chr1:201979743..201979762,+!p1@ELF3!2.28!188.19!ELF3;;chr1:201979703..201979721,+!p2@ELF3!2.14!137.82!ELF3;;chr5:2751762..2751784,-!p1@IRX2!2.02!104.67!IRX2;;chr2:176969228..176969260,+!p1@HOXD11!1.91!80.29!HOXD11;;chr1:209979467..209979494,-!p1@IRF6!1.87!81.79!IRF6;;chr3:189507432..189507459,+!p1@TP63!1.83!67.00!TP63;;chr11:34642612..34642646,+!p1@EHF!1.77!57.53!EHF;;chr5:2751785..2751808,-!p2@IRX2!1.70!49.44!IRX2;;chr6:126240380..126240430,+!p2@NCOA7!1.69!120.38!NCOA7;;chr2:176969179..176969226,+!p2@HOXD11!1.66!44.59!HOXD11;;chr6:126240442..126240459,+!p4@NCOA7!1.63!52.45!NCOA7;;chr6:10415484..10415508,-!p3@TFAP2A!1.63!42.05!TFAP2A;;chr8:10588010..10588030,-!p1@SOX7!1.59!38.24!SOX7;;chr10:48355030..48355090,+!p1@ZNF488!1.57!46.44!ZNF488;;chr15:83953397..83953425,-!p1@BNC1!1.56!40.32!BNC1;;chr8:102504651..102504683,+!p1@GRHL2!1.55!34.31!GRHL2;;chr1:209979411..209979433,-!p2@IRF6!1.55!34.08!IRF6;;chr12:52445218..52445237,+!p1@NR4A1!1.50!366.22!NR4A1;;chr6:10415276..10415341,-!p2@TFAP2A!1.45!33.39!TFAP2A;;chr17:80797886..80797906,-!p1@ZNF750!1.41!24.61!ZNF750;;chr2:46524897..46524911,+!p2@EPAS1!1.40!65.39!EPAS1;;chr6:126240463..126240489,+!p6@NCOA7!1.39!26.11!NCOA7;;chr6:10412600..10412637,-!p1@TFAP2A!1.38!38.12!TFAP2A;;chr17:7492684..7492778,-!p2@SOX15!1.31!40.78!SOX15;;chr11:120107344..120107351,+!p1@POU2F3!1.30!22.76!POU2F3;;chr5:137801160..137801176,+!p1@EGR1!1.29!1795.27!EGR1;;chr5:134369905..134369972,-!p1@PITX1!1.29!28.30!PITX1;;chr11:65554528..65554546,+!p1@OVOL1!1.29!18.48!OVOL1;;chr13:73633131..73633149,+!p1@KLF5!1.28!188.42!KLF5;;chr5:137804484..137804498,+!p2@EGR1!1.26!67.58!EGR1;;chr8:22550982..22550999,-!p1@EGR3!1.25!46.79!EGR3;;chr1:212782094..212782109,+!p1@ATF3!1.24!438.65!ATF3;;chr6:10412392..10412409,-!p4@TFAP2A!1.20!17.10!TFAP2A;;chr5:172662197..172662216,-!p1@NKX2-5!1.20!15.02!NKX2-5;;chr19:45971246..45971265,+!p1@FOSB!1.19!265.13!FOSB;;chr21:36421535..36421610,-!p2@RUNX1!1.14!46.09!RUNX1;;chr20:55204351..55204377,+!p1@TFAP2C!1.14!16.40!TFAP2C;;chr12:54785074..54785122,-!p2@ZNF385A!1.12!18.83!ZNF385A;;chr11:65554563..65554576,+!p2@OVOL1!1.11!12.01!OVOL1;;chr12:80084737..80084763,-!p3@PAWR!1.09!42.40!PAWR;;chr14:37131058..37131139,+!p1@PAX9!1.09!11.21!PAX9;;chr15:67418119..67418162,+!p5@SMAD3!1.08!12.25!SMAD3;;chr7:27153454..27153469,-!p2@HOXA3!1.07!10.63!HOXA3;;chr17:7493405..7493419,-!p1@SOX15!1.06!10.40!SOX15;;chr20:50721803..50721857,-!p2@ZFP64!1.05!16.17!ZFP64;;chr3:193853927..193853944,+!p1@HES1!1.04!325.09!HES1;;chr14:75745523..75745537,+!p1@FOS!1.03!1183.79!FOS;;chr2:73520667..73520683,-!p1@EGR4!1.02!9.47!EGR4;;chr6:34204672..34204692,+!p1@HMGA1!0.97!971.92!HMGA1;;chr8:128748470..128748487,+!p1@MYC!0.97!949.62!MYC;;chr8:102504979..102505010,+!p2@GRHL2!0.96!8.20!GRHL2;;chr17:8027418..8027432,-!p1@HES7!0.96!8.09!HES7;;chr11:65667884..65667895,-!p2@FOSL1!0.95!31.65!FOSL1;;chr12:80084279..80084293,-!p8@PAWR!0.94!12.94!PAWR;;chr5:137804130..137804156,+!p5@EGR1!0.94!8.32!EGR1;;chr17:48072574..48072597,-!p1@DLX3!0.94!7.74!DLX3;;chr3:138665937..138665968,-!p1@FOXL2!0.93!7.51!FOXL2;;chr17:70117153..70117174,+!p1@SOX9!0.92!78.56!SOX9;;chr8:99956662..99956684,+!p1@OSR2!0.92!11.44!OSR2;;chr6:10412576..10412599,-!p5@TFAP2A!0.91!7.05!TFAP2A;;chr2:172967621..172967637,-!p1@DLX2!0.90!19.18!DLX2;;chr6:126240356..126240379,+!p7@NCOA7!0.90!8.66!NCOA7;;chr8:102504690..102504704,+!p3@GRHL2!0.90!6.93!GRHL2;;chr1:209979449..209979460,-!p3@IRF6!0.90!6.93!IRF6;;chr11:65667846..65667868,-!p1@FOSL1!0.89!186.11!FOSL1;;chr12:80084303..80084332,-!p1@PAWR!0.89!42.40!PAWR;;chr1:6479968..6479986,-!p1@HES2!0.89!6.82!HES2;;chr19:33793430..33793447,-!p1@CEBPA!0.88!28.88!CEBPA;;chr5:321810..321877,+!p1@AHRR!0.88!21.72!AHRR;;chr5:1887070..1887114,-!p1@IRX4!0.88!6.58!IRX4;;chr6:10413188..10413249,-!p7@TFAP2A!0.88!6.58!TFAP2A;;chr5:137804357..137804390,+!p4@EGR1!0.87!7.62!EGR1;;chr12:54332608..54332636,+!p1@HOXC13!0.87!6.47!HOXC13;;chr22:19748231..19748317,+!p1@TBX1!0.87!6.35!TBX1;;chr2:176969124..176969155,+!p5@HOXD11!0.86!6.24!HOXD11;;chr13:41593425..41593480,-!p1@ELF1!0.85!40.90!ELF1;;chr5:134369879..134369898,-!p2@PITX1!0.85!6.01!PITX1;;chr8:128748308..128748324,+!p2@MYC!0.84!173.64!MYC;;chr19:45908292..45908374,-!p1@PPP1R13L!0.84!56.15!PPP1R13L;;chr2:46524878..46524891,+!p3@EPAS1!0.84!10.74!EPAS1;;chr5:137804405..137804444,+!p3@EGR1!0.84!7.28!EGR1;;chr3:138665969..138665993,-!p2@FOXL2!0.84!5.89!FOXL2;;chr15:83953373..83953386,-!p2@BNC1!0.84!5.89!BNC1;;chr6:1312325..1312340,+!p1@FOXQ1!0.83!9.70!FOXQ1;;chr6:126240542..126240553,+!p14@NCOA7!0.83!5.78!NCOA7;;chr6:10419768..10419819,-!p6@TFAP2A!0.82!5.66!TFAP2A;;chr6:1389789..1389821,+!p1@FOXF2!0.81!7.74!FOXF2;;chr6:10412477..10412490,-!p10@TFAP2A!0.81!5.43!TFAP2A;;chr15:67418047..67418093,+!p4@SMAD3!0.80!6.82!SMAD3;;chr12:54785054..54785072,-!p4@ZNF385A!0.80!6.12!ZNF385A;;chr1:59249688..59249703,-!p3@JUN!0.79!33.62!JUN;;chr12:53625966..53626012,-!p2@RARG!0.79!14.67!RARG;;chr17:41622925..41622976,-!p3@ETV4!0.78!7.86!ETV4;;chr6:34210478..3421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| 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| ||
|ffid_belonging_in_development=CL:0000223,UBERON:0002532,UBERON:0006601,UBERON:0006595,UBERON:0008814,UBERON:0010056,UBERON:0010316 | |||
|fonse_cell_line=FF:0100786,FF:0101120,FF:0102027 | |fonse_cell_line=FF:0100786,FF:0101120,FF:0102027 | ||
|fonse_cell_line_closure=FF:0100786,FF:0101120,FF:0102027 | |fonse_cell_line_closure=FF:0100786,FF:0101120,FF:0102027 | ||
| Line 35: | Line 41: | ||
|fonse_treatment_closure= | |fonse_treatment_closure= | ||
|has_quality= | |has_quality= | ||
|hg19bam=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.cell_line.hCAGE/oral%2520squamous%2520cell%2520carcinoma%2520cell%2520line%253aSAS.CNhs11810.10544-107H4.hg19.nobarcode.bam | |||
|hg19ctss=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.cell_line.hCAGE/oral%2520squamous%2520cell%2520carcinoma%2520cell%2520line%253aSAS.CNhs11810.10544-107H4.hg19.ctss.bed.gz | |||
|hg19fasta=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.cell_line.hCAGE/oral%2520squamous%2520cell%2520carcinoma%2520cell%2520line%253aSAS.CNhs11810.10544-107H4.hg19.nobarcode.rdna.fa.gz | |||
|hg38bam=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.cell_line.hCAGE/oral%2520squamous%2520cell%2520carcinoma%2520cell%2520line%253aSAS.CNhs11810.10544-107H4.hg38.nobarcode.bam | |||
|hg38ctss=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.cell_line.hCAGE/oral%2520squamous%2520cell%2520carcinoma%2520cell%2520line%253aSAS.CNhs11810.10544-107H4.hg38.nobarcode.ctss.bed.gz | |||
|id=FF:10544-107H4 | |id=FF:10544-107H4 | ||
|is_a=EFO:0002091;;FF: | |is_a=EFO:0002091;;FF:0000210;;FF:0103981 | ||
|is_obsolete= | |||
|library_id=CNhs11810 | |||
|library_id_phase_based=2:CNhs11810 | |||
|microRNAs= | |||
|microRNAs_nn= | |||
|microRNAs_nonnovel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer/#/human#cage;sample;10544 | |||
|microRNAs_novel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer_novel/#/human#cage;sample;10544 | |||
|name=oral squamous cell carcinoma cell line:SAS | |name=oral squamous cell carcinoma cell line:SAS | ||
|namespace=FANTOM5 | |namespace=FANTOM5 | ||
| Line 42: | Line 60: | ||
|profile_cagescan=,,, | |profile_cagescan=,,, | ||
|profile_hcage=CNhs11810,LSID829,release010,COMPLETED | |profile_hcage=CNhs11810,LSID829,release010,COMPLETED | ||
|profile_rnaseq= | |profile_rnaseq= | ||
|profile_srnaseq=,,, | |profile_srnaseq=,,, | ||
|refex=http://refex.dbcls.jp/genelist.php?lang | |||
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| |||
|rna_box=107 | |rna_box=107 | ||
|rna_catalog_number= | |rna_catalog_number= | ||
| Line 57: | Line 78: | ||
|rna_weight_ug=76.4589 | |rna_weight_ug=76.4589 | ||
|sample_age= | |sample_age= | ||
|sample_category=cell lines | |||
|sample_cell_catalog=RCB1974 | |sample_cell_catalog=RCB1974 | ||
|sample_cell_line=SAS | |sample_cell_line=SAS | ||
| Line 69: | Line 91: | ||
|sample_ethnicity= | |sample_ethnicity= | ||
|sample_experimental_condition= | |sample_experimental_condition= | ||
|sample_gostat=GO:0044464;cell part;0!GO:0005622;intracellular;0!GO:0044424;intracellular part;1.68561969802761e-251!GO:0043226;organelle;1.01647844497135e-202!GO:0043229;intracellular organelle;3.23412794002428e-202!GO:0043231;intracellular membrane-bound organelle;9.52040412269607e-197!GO:0043227;membrane-bound organelle;1.29869888435188e-196!GO:0005737;cytoplasm;4.45951338489134e-170!GO:0044422;organelle part;3.18788932981284e-147!GO:0044446;intracellular organelle part;8.63521091287306e-146!GO:0032991;macromolecular complex;1.71377659083237e-111!GO:0044444;cytoplasmic part;2.55847270095387e-106!GO:0005634;nucleus;1.77514295038731e-99!GO:0043170;macromolecule metabolic process;2.26995186755741e-93!GO:0044238;primary metabolic process;3.4682919127593e-93!GO:0044237;cellular metabolic process;3.6337084384824e-93!GO:0030529;ribonucleoprotein complex;3.45589249454879e-90!GO:0005515;protein binding;9.82720362695505e-86!GO:0044428;nuclear part;2.47260078763752e-85!GO:0003723;RNA binding;1.33451499887897e-77!GO:0043233;organelle lumen;2.26636177172879e-74!GO:0031974;membrane-enclosed lumen;2.26636177172879e-74!GO:0043283;biopolymer metabolic process;5.99491446114856e-60!GO:0005739;mitochondrion;1.72115552952466e-58!GO:0043234;protein complex;8.06623711922275e-58!GO:0006412;translation;1.50626004773794e-57!GO:0019538;protein metabolic process;3.7029487483693e-55!GO:0016043;cellular component organization and biogenesis;3.71043913417766e-55!GO:0005840;ribosome;1.04289423979025e-54!GO:0006396;RNA processing;1.7459738335362e-54!GO:0006139;nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;5.59518737405349e-51!GO:0010467;gene expression;7.36703592103659e-51!GO:0044267;cellular protein metabolic process;8.64322968765708e-50!GO:0031981;nuclear lumen;1.07915457622374e-49!GO:0044260;cellular macromolecule metabolic process;4.46251441965317e-49!GO:0003735;structural constituent of ribosome;4.15981094636896e-48!GO:0043228;non-membrane-bound organelle;2.40004618564511e-45!GO:0043232;intracellular non-membrane-bound organelle;2.40004618564511e-45!GO:0006259;DNA metabolic process;2.85983920737242e-43!GO:0016071;mRNA metabolic process;1.26607998760216e-42!GO:0033279;ribosomal subunit;8.10862249486301e-42!GO:0015031;protein transport;1.94287531468568e-41!GO:0044249;cellular biosynthetic process;6.11502520434514e-41!GO:0033036;macromolecule localization;1.00596322374961e-40!GO:0031090;organelle membrane;1.26298606876898e-40!GO:0006996;organelle organization and biogenesis;3.13735397514222e-39!GO:0031967;organelle envelope;9.16234533953364e-39!GO:0009059;macromolecule biosynthetic process;1.65106517828412e-38!GO:0031975;envelope;2.19326207936984e-38!GO:0044429;mitochondrial part;2.64626344446516e-38!GO:0008380;RNA splicing;3.53424773030156e-38!GO:0065003;macromolecular complex assembly;6.05189717256322e-38!GO:0045184;establishment of protein localization;7.78277350295803e-37!GO:0009058;biosynthetic process;9.96981685205109e-37!GO:0007049;cell cycle;1.09368712185558e-36!GO:0008104;protein localization;1.09368712185558e-36!GO:0006397;mRNA processing;1.74470066382184e-36!GO:0005829;cytosol;5.36193661376262e-36!GO:0022613;ribonucleoprotein complex biogenesis and assembly;6.07918299467158e-35!GO:0022607;cellular component assembly;9.10658627741408e-34!GO:0046907;intracellular transport;3.84801713356177e-33!GO:0005654;nucleoplasm;5.55836156806106e-31!GO:0005830;cytosolic ribosome (sensu Eukaryota);6.44916026800474e-31!GO:0003676;nucleic acid binding;1.86324971879786e-30!GO:0006886;intracellular protein transport;2.71817467580219e-29!GO:0005681;spliceosome;1.40299404567867e-27!GO:0022402;cell cycle process;2.16431847835836e-27!GO:0000166;nucleotide binding;5.3124012831967e-27!GO:0044451;nucleoplasm part;9.9174791482834e-26!GO:0044445;cytosolic part;1.29752587965675e-24!GO:0005740;mitochondrial envelope;7.48226829136636e-24!GO:0016070;RNA metabolic process;1.09508658837759e-23!GO:0005694;chromosome;2.5304580196935e-23!GO:0000278;mitotic cell cycle;2.55862128417609e-23!GO:0016462;pyrophosphatase activity;1.12537351491235e-22!GO:0015934;large ribosomal subunit;1.25735468188605e-22!GO:0016818;hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides;1.614147655619e-22!GO:0019866;organelle inner membrane;1.79239110321057e-22!GO:0016817;hydrolase activity, acting on acid anhydrides;2.28126395762886e-22!GO:0031966;mitochondrial membrane;2.58132135407437e-22!GO:0006974;response to DNA damage stimulus;3.36849789332714e-22!GO:0017111;nucleoside-triphosphatase activity;4.83593151869962e-22!GO:0006119;oxidative phosphorylation;1.0395047790805e-20!GO:0008134;transcription factor binding;1.14601296855256e-20!GO:0044427;chromosomal part;1.70458614731226e-20!GO:0051649;establishment of cellular localization;1.78152915179402e-20!GO:0006512;ubiquitin cycle;2.58759907068535e-20!GO:0015935;small ribosomal subunit;2.63048493227783e-20!GO:0005743;mitochondrial inner membrane;2.81799962853703e-20!GO:0051641;cellular localization;4.30013444568252e-20!GO:0016874;ligase activity;5.64723256786352e-20!GO:0051276;chromosome organization and biogenesis;9.89392984117522e-20!GO:0022618;protein-RNA complex assembly;2.16975754051774e-19!GO:0006260;DNA replication;9.00577508678917e-19!GO:0006281;DNA repair;1.03806779501104e-18!GO:0005730;nucleolus;1.09862537774148e-18!GO:0032553;ribonucleotide binding;2.07057070494297e-18!GO:0032555;purine ribonucleotide binding;2.07057070494297e-18!GO:0022403;cell cycle phase;2.38307016880851e-18!GO:0051603;proteolysis involved in cellular protein catabolic process;2.94237154520857e-18!GO:0043285;biopolymer catabolic process;3.20636829389746e-18!GO:0044455;mitochondrial membrane part;3.23161962015862e-18!GO:0019941;modification-dependent protein catabolic process;4.88209004138197e-18!GO:0043632;modification-dependent macromolecule catabolic process;4.88209004138197e-18!GO:0017076;purine nucleotide binding;4.92688847802904e-18!GO:0006511;ubiquitin-dependent protein catabolic process;5.4186793740445e-18!GO:0044257;cellular protein catabolic process;9.42956261096326e-18!GO:0044265;cellular macromolecule catabolic process;9.48943680915539e-18!GO:0008135;translation factor activity, nucleic acid binding;1.2686523739186e-17!GO:0000087;M phase of mitotic cell cycle;1.65034709421308e-17!GO:0031980;mitochondrial lumen;1.85941065923997e-17!GO:0005759;mitochondrial matrix;1.85941065923997e-17!GO:0007067;mitosis;2.59654137346725e-17!GO:0006366;transcription from RNA polymerase II promoter;3.72518102191801e-17!GO:0006325;establishment and/or maintenance of chromatin architecture;1.18816207952181e-16!GO:0005842;cytosolic large ribosomal subunit (sensu Eukaryota);1.27491904671682e-16!GO:0006457;protein folding;1.5644951553343e-16!GO:0043412;biopolymer modification;1.57838096395517e-16!GO:0012505;endomembrane system;2.40944491434401e-16!GO:0042254;ribosome biogenesis and assembly;2.53600162536202e-16!GO:0000502;proteasome complex (sensu Eukaryota);4.85381856916945e-16!GO:0006605;protein targeting;4.85381856916945e-16!GO:0006323;DNA packaging;5.31103129676848e-16!GO:0000074;regulation of progression through cell cycle;5.72848587732906e-16!GO:0051726;regulation of cell cycle;6.09383599080291e-16!GO:0048770;pigment granule;6.21762979901619e-16!GO:0042470;melanosome;6.21762979901619e-16!GO:0051301;cell division;9.96394266765366e-16!GO:0005635;nuclear envelope;1.33662927366893e-15!GO:0009719;response to endogenous stimulus;1.79638723133152e-15!GO:0030163;protein catabolic process;3.03415997000061e-15!GO:0012501;programmed cell death;3.34968865089512e-15!GO:0000279;M phase;4.02879465901238e-15!GO:0009057;macromolecule catabolic process;4.22652780830662e-15!GO:0031965;nuclear membrane;5.45346426986882e-15!GO:0006915;apoptosis;5.93672930051363e-15!GO:0000398;nuclear mRNA splicing, via spliceosome;7.09479924752986e-15!GO:0000375;RNA splicing, via transesterification reactions;7.09479924752986e-15!GO:0000377;RNA splicing, via transesterification reactions with bulged adenosine as nucleophile;7.09479924752986e-15!GO:0005843;cytosolic small ribosomal subunit (sensu Eukaryota);7.47983855295793e-15!GO:0005761;mitochondrial ribosome;1.14947689024274e-14!GO:0000313;organellar ribosome;1.14947689024274e-14!GO:0005746;mitochondrial respiratory chain;1.26733879985403e-14!GO:0005524;ATP binding;1.70634934955315e-14!GO:0006464;protein modification process;1.73910952572222e-14!GO:0044453;nuclear membrane part;2.05106956070367e-14!GO:0032559;adenyl ribonucleotide binding;2.61534422563355e-14!GO:0043687;post-translational protein modification;3.32113949040348e-14!GO:0016655;oxidoreductase activity, acting on NADH or NADPH, quinone or similar compound as acceptor;7.58563549029979e-14!GO:0008219;cell death;7.72161299043592e-14!GO:0016265;death;7.72161299043592e-14!GO:0030554;adenyl nucleotide binding;8.306627296429e-14!GO:0003743;translation initiation factor activity;1.79126138640723e-13!GO:0050136;NADH dehydrogenase (quinone) activity;3.36697122465512e-13!GO:0003954;NADH dehydrogenase activity;3.36697122465512e-13!GO:0008137;NADH dehydrogenase (ubiquinone) activity;3.36697122465512e-13!GO:0050794;regulation of cellular process;3.96059558978285e-13!GO:0051082;unfolded protein binding;4.73999047508486e-13!GO:0005643;nuclear pore;5.90880468780219e-13!GO:0003712;transcription cofactor activity;6.10003388739151e-13!GO:0000785;chromatin;1.01650959460936e-12!GO:0006913;nucleocytoplasmic transport;2.27146655804259e-12!GO:0048523;negative regulation of cellular process;2.81975452781974e-12!GO:0016887;ATPase activity;4.42917092145266e-12!GO:0044248;cellular catabolic process;4.6824362691294e-12!GO:0051169;nuclear transport;6.39014841668191e-12!GO:0042623;ATPase activity, coupled;6.40190080610202e-12!GO:0042775;organelle ATP synthesis coupled electron transport;6.49069081616179e-12!GO:0042773;ATP synthesis coupled electron transport;6.49069081616179e-12!GO:0048193;Golgi vesicle transport;6.7005757050142e-12!GO:0006413;translational initiation;7.00554458912184e-12!GO:0050657;nucleic acid transport;1.10124945641839e-11!GO:0051236;establishment of RNA localization;1.10124945641839e-11!GO:0050658;RNA transport;1.10124945641839e-11!GO:0016604;nuclear body;1.19400397968858e-11!GO:0006403;RNA localization;1.25881905468641e-11!GO:0016879;ligase activity, forming carbon-nitrogen bonds;2.0890242845893e-11!GO:0030964;NADH dehydrogenase complex (quinone);2.36302450001341e-11!GO:0045271;respiratory chain complex I;2.36302450001341e-11!GO:0005747;mitochondrial respiratory chain complex I;2.36302450001341e-11!GO:0006461;protein complex assembly;2.54436851681805e-11!GO:0006333;chromatin assembly or disassembly;3.20675461854178e-11!GO:0004386;helicase activity;4.55764542898082e-11!GO:0006120;mitochondrial electron transport, NADH to ubiquinone;5.76909040413561e-11!GO:0006399;tRNA metabolic process;7.059255955365e-11!GO:0065004;protein-DNA complex assembly;8.17272612234338e-11!GO:0005783;endoplasmic reticulum;8.6548977326396e-11!GO:0065002;intracellular protein transport across a membrane;9.05768180083063e-11!GO:0043067;regulation of programmed cell death;1.24649746107832e-10!GO:0006364;rRNA processing;1.28813173551744e-10!GO:0042981;regulation of apoptosis;1.3857293074346e-10!GO:0006446;regulation of translational initiation;1.85457052939747e-10!GO:0046930;pore complex;1.89885321878101e-10!GO:0016072;rRNA metabolic process;2.0293431839157e-10!GO:0048519;negative regulation of biological process;2.05913794244736e-10!GO:0008639;small protein conjugating enzyme activity;2.15603859278967e-10!GO:0044432;endoplasmic reticulum part;2.20720192190925e-10!GO:0051186;cofactor metabolic process;3.35358994429223e-10!GO:0005794;Golgi apparatus;3.65493062804755e-10!GO:0016568;chromatin modification;4.0409367430574e-10!GO:0016192;vesicle-mediated transport;4.38958179804672e-10!GO:0006357;regulation of transcription from RNA polymerase II promoter;4.40810557545072e-10!GO:0004842;ubiquitin-protein ligase activity;4.54432774987734e-10!GO:0016651;oxidoreductase activity, acting on NADH or NADPH;6.06808896503821e-10!GO:0019787;small conjugating protein ligase activity;6.35284908911834e-10!GO:0031324;negative regulation of cellular metabolic process;9.22022093937605e-10!GO:0051028;mRNA transport;1.15021377664041e-09!GO:0015931;nucleobase, nucleoside, nucleotide and nucleic acid transport;1.292859007553e-09!GO:0046961;hydrogen ion transporting ATPase activity, rotational mechanism;1.70057080793932e-09!GO:0008026;ATP-dependent helicase activity;2.14482612443303e-09!GO:0017038;protein import;2.70135203951332e-09!GO:0016607;nuclear speck;3.23187806942075e-09!GO:0016881;acid-amino acid ligase activity;3.36434803202661e-09!GO:0008565;protein transporter activity;3.86905941828332e-09!GO:0009055;electron carrier activity;5.24631023806551e-09!GO:0006261;DNA-dependent DNA replication;6.09824719492783e-09!GO:0009259;ribonucleotide metabolic process;6.3595902278022e-09!GO:0046933;hydrogen ion transporting ATP synthase activity, rotational mechanism;7.05201033817586e-09!GO:0006163;purine nucleotide metabolic process;7.97685068164435e-09!GO:0005667;transcription factor complex;8.14101233545664e-09!GO:0043566;structure-specific DNA binding;8.80365567988884e-09!GO:0015630;microtubule cytoskeleton;9.1547669110716e-09!GO:0045934;negative regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;1.29722950558523e-08!GO:0051246;regulation of protein metabolic process;1.4183717417781e-08!GO:0006164;purine nucleotide biosynthetic process;2.41101186605076e-08!GO:0050789;regulation of biological process;2.56571347727403e-08!GO:0006732;coenzyme metabolic process;2.77867608893832e-08!GO:0030532;small nuclear ribonucleoprotein complex;2.83151403790753e-08!GO:0032446;protein modification by small protein conjugation;3.33534895826809e-08!GO:0003924;GTPase activity;3.46200339452015e-08!GO:0015986;ATP synthesis coupled proton transport;3.55002713883978e-08!GO:0015985;energy coupled proton transport, down electrochemical gradient;3.55002713883978e-08!GO:0009892;negative regulation of metabolic process;3.88398938535274e-08!GO:0016564;transcription repressor activity;3.98389532723198e-08!GO:0009150;purine ribonucleotide metabolic process;4.02850748826604e-08!GO:0016876;ligase activity, forming aminoacyl-tRNA and related compounds;4.02850748826604e-08!GO:0004812;aminoacyl-tRNA ligase activity;4.02850748826604e-08!GO:0016875;ligase activity, forming carbon-oxygen bonds;4.02850748826604e-08!GO:0009260;ribonucleotide biosynthetic process;4.18734867585175e-08!GO:0042175;nuclear envelope-endoplasmic reticulum network;4.20167174672771e-08!GO:0003697;single-stranded DNA binding;4.68725141763285e-08!GO:0016567;protein ubiquitination;5.04415670811043e-08!GO:0016591;DNA-directed RNA polymerase II, holoenzyme;6.25321484303537e-08!GO:0016563;transcription activator activity;7.24811851613606e-08!GO:0043623;cellular protein complex assembly;7.65560031543877e-08!GO:0005789;endoplasmic reticulum membrane;7.69415247787049e-08!GO:0043038;amino acid activation;8.09556091540179e-08!GO:0006418;tRNA aminoacylation for protein translation;8.09556091540179e-08!GO:0043039;tRNA aminoacylation;8.09556091540179e-08!GO:0005813;centrosome;8.26604067482873e-08!GO:0043069;negative regulation of programmed cell death;8.28222808204158e-08!GO:0006334;nucleosome assembly;8.34553774497523e-08!GO:0005819;spindle;9.4714102999422e-08!GO:0009152;purine ribonucleotide biosynthetic process;1.1628229641948e-07!GO:0005768;endosome;1.45283012341657e-07!GO:0009141;nucleoside triphosphate metabolic process;1.48759524933575e-07!GO:0009142;nucleoside triphosphate biosynthetic process;1.56805437993537e-07!GO:0009201;ribonucleoside triphosphate biosynthetic process;1.56805437993537e-07!GO:0009199;ribonucleoside triphosphate metabolic process;1.56805437993537e-07!GO:0016481;negative regulation of transcription;1.5885556296454e-07!GO:0031497;chromatin assembly;1.7262591433967e-07!GO:0048522;positive regulation of cellular process;1.7262591433967e-07!GO:0005839;proteasome core complex (sensu Eukaryota);1.83082788093747e-07!GO:0005815;microtubule organizing center;2.01941261629128e-07!GO:0043066;negative regulation of apoptosis;2.26000982707237e-07!GO:0005793;ER-Golgi intermediate compartment;2.69502636116332e-07!GO:0009205;purine ribonucleoside triphosphate metabolic process;2.86629025755879e-07!GO:0009144;purine nucleoside triphosphate metabolic process;2.86629025755879e-07!GO:0009206;purine ribonucleoside triphosphate biosynthetic process;2.92389580075971e-07!GO:0009145;purine nucleoside triphosphate biosynthetic process;2.92389580075971e-07!GO:0006793;phosphorus metabolic process;3.03379901904204e-07!GO:0006796;phosphate metabolic process;3.03379901904204e-07!GO:0019829;cation-transporting ATPase activity;3.24666275099101e-07!GO:0003713;transcription coactivator activity;4.00718989178582e-07!GO:0019222;regulation of metabolic process;4.21486120258047e-07!GO:0051329;interphase of mitotic cell cycle;4.31076255397117e-07!GO:0006754;ATP biosynthetic process;4.43584992583514e-07!GO:0006753;nucleoside phosphate metabolic process;4.43584992583514e-07!GO:0051188;cofactor biosynthetic process;5.52706589972792e-07!GO:0004298;threonine endopeptidase activity;5.55298609933341e-07!GO:0016779;nucleotidyltransferase activity;5.88026831063833e-07!GO:0046034;ATP metabolic process;6.23754589096336e-07!GO:0000245;spliceosome assembly;6.39232016051708e-07!GO:0016787;hydrolase activity;6.48561097047243e-07!GO:0007005;mitochondrion organization and biogenesis;6.8295730139514e-07!GO:0045786;negative regulation of progression through cell cycle;8.06539669742251e-07!GO:0051325;interphase;8.15547513898316e-07!GO:0005657;replication fork;8.19769445312225e-07!GO:0055086;nucleobase, nucleoside and nucleotide metabolic process;8.74172530619387e-07!GO:0005525;GTP binding;9.7099398366841e-07!GO:0000775;chromosome, pericentric region;1.66452548021687e-06!GO:0051427;hormone receptor binding;1.69526836792379e-06!GO:0048475;coated membrane;1.77929727974766e-06!GO:0030117;membrane coat;1.77929727974766e-06!GO:0016469;proton-transporting two-sector ATPase complex;1.9193839694004e-06!GO:0051170;nuclear import;2.0028914041064e-06!GO:0006916;anti-apoptosis;2.16796964022311e-06!GO:0000075;cell cycle checkpoint;2.23503094982704e-06!GO:0045259;proton-transporting ATP synthase complex;2.26705734045187e-06!GO:0009056;catabolic process;2.80219883312271e-06!GO:0035257;nuclear hormone receptor binding;3.4712648549548e-06!GO:0016310;phosphorylation;3.62553234503346e-06!GO:0000151;ubiquitin ligase complex;4.00781801156129e-06!GO:0006606;protein import into nucleus;4.14967055472379e-06!GO:0006888;ER to Golgi vesicle-mediated transport;4.26408708148071e-06!GO:0043123;positive regulation of I-kappaB kinase/NF-kappaB cascade;4.52737563680477e-06!GO:0009060;aerobic respiration;4.72431458351775e-06!GO:0007249;I-kappaB kinase/NF-kappaB cascade;4.93453674419574e-06!GO:0030120;vesicle coat;4.94434754493624e-06!GO:0030662;coated vesicle membrane;4.94434754493624e-06!GO:0006752;group transfer coenzyme metabolic process;5.1427518388342e-06!GO:0042802;identical protein binding;5.96979675315636e-06!GO:0015078;hydrogen ion transmembrane transporter activity;6.2462286811773e-06!GO:0019899;enzyme binding;6.71098393248699e-06!GO:0031202;RNA splicing factor activity, transesterification mechanism;6.83606411262977e-06!GO:0000079;regulation of cyclin-dependent protein kinase activity;7.05871553712184e-06!GO:0009108;coenzyme biosynthetic process;7.37258540374447e-06!GO:0045333;cellular respiration;7.64705379307363e-06!GO:0043122;regulation of I-kappaB kinase/NF-kappaB cascade;7.6697914793454e-06!GO:0045893;positive regulation of transcription, DNA-dependent;8.01692649006969e-06!GO:0045935;positive regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;8.92468611830307e-06!GO:0007051;spindle organization and biogenesis;9.25857582066966e-06!GO:0051168;nuclear export;1.06709712241649e-05!GO:0044440;endosomal part;1.06709712241649e-05!GO:0010008;endosome membrane;1.06709712241649e-05!GO:0005762;mitochondrial large ribosomal subunit;1.10828219276218e-05!GO:0000315;organellar large ribosomal subunit;1.10828219276218e-05!GO:0003682;chromatin binding;1.25109205959014e-05!GO:0003724;RNA helicase activity;1.33367035647289e-05!GO:0032561;guanyl ribonucleotide binding;1.55910724000466e-05!GO:0019001;guanyl nucleotide binding;1.55910724000466e-05!GO:0008094;DNA-dependent ATPase activity;1.61418099092195e-05!GO:0009117;nucleotide metabolic process;1.62769545779649e-05!GO:0045941;positive regulation of transcription;1.79179086611619e-05!GO:0003714;transcription corepressor activity;1.90622072357542e-05!GO:0016740;transferase activity;1.930180991137e-05!GO:0007243;protein kinase cascade;2.86310249088919e-05!GO:0003729;mRNA binding;2.95582021180221e-05!GO:0065009;regulation of a molecular function;3.53076122889755e-05!GO:0006402;mRNA catabolic process;3.78394577087663e-05!GO:0003899;DNA-directed RNA polymerase activity;4.27302345434309e-05!GO:0006302;double-strand break repair;4.33143632488875e-05!GO:0003690;double-stranded DNA binding;4.93670771400843e-05!GO:0031323;regulation of cellular metabolic process;5.19209911439575e-05!GO:0006099;tricarboxylic acid cycle;5.63310697970069e-05!GO:0046356;acetyl-CoA catabolic process;5.63310697970069e-05!GO:0045892;negative regulation of transcription, DNA-dependent;6.0171371297921e-05!GO:0008654;phospholipid biosynthetic process;6.30241080234725e-05!GO:0048518;positive regulation of biological process;6.50754412728161e-05!GO:0030530;heterogeneous nuclear ribonucleoprotein complex;6.62555479771302e-05!GO:0006414;translational elongation;7.4329556507702e-05!GO:0007088;regulation of mitosis;8.14344315028876e-05!GO:0016772;transferase activity, transferring phosphorus-containing groups;8.42498333336228e-05!GO:0065007;biological regulation;8.52047064791706e-05!GO:0000786;nucleosome;9.03101195414567e-05!GO:0000314;organellar small ribosomal subunit;9.07667669179043e-05!GO:0005763;mitochondrial small ribosomal subunit;9.07667669179043e-05!GO:0051052;regulation of DNA metabolic process;9.07667669179043e-05!GO:0048471;perinuclear region of cytoplasm;0.000110470861385332!GO:0006613;cotranslational protein targeting to membrane;0.00011664592732043!GO:0006084;acetyl-CoA metabolic process;0.000120083354214491!GO:0009109;coenzyme catabolic process;0.000131553827566141!GO:0006401;RNA catabolic process;0.000132626913282692!GO:0007264;small GTPase mediated signal transduction;0.000139964717744694!GO:0043021;ribonucleoprotein binding;0.000206139031837423!GO:0008186;RNA-dependent ATPase activity;0.000217980120220397!GO:0006626;protein targeting to mitochondrion;0.000233582433716522!GO:0008033;tRNA processing;0.000264587493054598!GO:0032508;DNA duplex unwinding;0.000264587493054598!GO:0032392;DNA geometric change;0.000264587493054598!GO:0048468;cell development;0.000276000284400845!GO:0006352;transcription initiation;0.000288491369201303!GO:0031988;membrane-bound vesicle;0.00029360289311641!GO:0003702;RNA polymerase II transcription factor activity;0.000303250208947104!GO:0015077;monovalent inorganic cation transmembrane transporter activity;0.000304175437877056!GO:0005769;early endosome;0.0003083906646893!GO:0044431;Golgi apparatus part;0.000330496369225977!GO:0045454;cell redox homeostasis;0.000330496369225977!GO:0016023;cytoplasmic membrane-bound vesicle;0.000335545434474977!GO:0051252;regulation of RNA metabolic process;0.000338872855634396!GO:0007010;cytoskeleton organization and biogenesis;0.000354530604343817!GO:0005798;Golgi-associated vesicle;0.000369673253056843!GO:0008361;regulation of cell size;0.000379724809301845!GO:0043681;protein import into mitochondrion;0.000390445268645018!GO:0006268;DNA unwinding during replication;0.000407303842917605!GO:0033178;proton-transporting two-sector ATPase complex, catalytic domain;0.000407910985460803!GO:0051187;cofactor catabolic process;0.000411387486521591!GO:0006950;response to stress;0.000413149111332351!GO:0031252;leading edge;0.000415110563101737!GO:0030036;actin cytoskeleton organization and biogenesis;0.00042579132981439!GO:0000776;kinetochore;0.000448061655403284!GO:0006310;DNA recombination;0.000450371751973715!GO:0005048;signal sequence binding;0.000528393986097573!GO:0000082;G1/S transition of mitotic cell cycle;0.000570895100056253!GO:0000307;cyclin-dependent protein kinase holoenzyme complex;0.000571798474443825!GO:0005753;mitochondrial proton-transporting ATP synthase complex;0.000598409388702289!GO:0004004;ATP-dependent RNA helicase activity;0.000612886171060075!GO:0005770;late endosome;0.000612889951257094!GO:0006350;transcription;0.000629505782627343!GO:0005852;eukaryotic translation initiation factor 3 complex;0.000641667185951059!GO:0006417;regulation of translation;0.000644077255577868!GO:0004527;exonuclease activity;0.000668871978381195!GO:0016363;nuclear matrix;0.000669199284678073!GO:0001558;regulation of cell growth;0.000727477720097072!GO:0005885;Arp2/3 protein complex;0.000747306729774748!GO:0051338;regulation of transferase activity;0.000782402650845526!GO:0016049;cell growth;0.000792881033275981!GO:0008168;methyltransferase activity;0.000977249702380233!GO:0007052;mitotic spindle organization and biogenesis;0.000980073889001193!GO:0031072;heat shock protein binding;0.000980073889001193!GO:0006383;transcription from RNA polymerase III promoter;0.000986318566910403!GO:0005788;endoplasmic reticulum lumen;0.000986318566910403!GO:0007093;mitotic cell cycle checkpoint;0.000990807794167644!GO:0006405;RNA export from nucleus;0.00105628741519358!GO:0009967;positive regulation of signal transduction;0.00105819046033973!GO:0016741;transferase activity, transferring one-carbon groups;0.00106825609496129!GO:0045261;proton-transporting ATP synthase complex, catalytic core F(1);0.00107722987670592!GO:0016251;general RNA polymerase II transcription factor activity;0.00119415952710143!GO:0033116;ER-Golgi intermediate compartment membrane;0.00121165058484005!GO:0000122;negative regulation of transcription from RNA polymerase II promoter;0.0012747560356513!GO:0016853;isomerase activity;0.00129607654893569!GO:0046474;glycerophospholipid biosynthetic process;0.00129607654893569!GO:0010468;regulation of gene expression;0.00134956808131304!GO:0005684;U2-dependent spliceosome;0.00144432653733016!GO:0006612;protein targeting to membrane;0.0014559289393838!GO:0003678;DNA helicase activity;0.00147191130945054!GO:0007059;chromosome segregation;0.00147593159679764!GO:0003746;translation elongation factor activity;0.0015101804666187!GO:0009116;nucleoside metabolic process;0.00153383417648535!GO:0043549;regulation of kinase activity;0.00154811166615287!GO:0030521;androgen receptor signaling pathway;0.00157927483139581!GO:0042625;ATPase activity, coupled to transmembrane movement of ions;0.00158714574083842!GO:0044452;nucleolar part;0.00160313282901843!GO:0030867;rough endoplasmic reticulum membrane;0.00164755800765063!GO:0030880;RNA polymerase complex;0.0017085714935009!GO:0016197;endosome transport;0.00177909149696776!GO:0046489;phosphoinositide biosynthetic process;0.00189644176970933!GO:0051920;peroxiredoxin activity;0.00195998223508518!GO:0008632;apoptotic program;0.00197996917112238!GO:0043488;regulation of mRNA stability;0.00197996917112238!GO:0043487;regulation of RNA stability;0.00197996917112238!GO:0035258;steroid hormone receptor binding;0.00201404325547448!GO:0016679;oxidoreductase activity, acting on diphenols and related substances as donors;0.00201706565710186!GO:0016681;oxidoreductase activity, acting on diphenols and related substances as donors, cytochrome as acceptor;0.00201706565710186!GO:0008121;ubiquinol-cytochrome-c reductase activity;0.00201706565710186!GO:0000059;protein import into nucleus, docking;0.00202188922549674!GO:0006891;intra-Golgi vesicle-mediated transport;0.00202291892563897!GO:0050790;regulation of catalytic activity;0.00209190584070115!GO:0005773;vacuole;0.00211611232486597!GO:0051789;response to protein stimulus;0.00218003886903696!GO:0006986;response to unfolded protein;0.00218003886903696!GO:0006839;mitochondrial transport;0.0021945083931563!GO:0031326;regulation of cellular biosynthetic process;0.00222408518890272!GO:0043065;positive regulation of apoptosis;0.00222682293353259!GO:0009893;positive regulation of metabolic process;0.00225525811412146!GO:0046983;protein dimerization activity;0.00226350732955497!GO:0043596;nuclear replication fork;0.00237987134569556!GO:0019843;rRNA binding;0.00237987134569556!GO:0000049;tRNA binding;0.00257464195045441!GO:0031982;vesicle;0.00263192204410036!GO:0030118;clathrin coat;0.00263192204410036!GO:0005637;nuclear inner membrane;0.0028311335478946!GO:0003755;peptidyl-prolyl cis-trans isomerase activity;0.0028311335478946!GO:0000139;Golgi membrane;0.00292452748471328!GO:0006611;protein export from nucleus;0.00301103411135107!GO:0008139;nuclear localization sequence binding;0.00305090585156168!GO:0045263;proton-transporting ATP synthase complex, coupling factor F(o);0.00306305440947963!GO:0033177;proton-transporting two-sector ATPase complex, proton-transporting domain;0.00306305440947963!GO:0003684;damaged DNA binding;0.0030711958186677!GO:0055029;nuclear DNA-directed RNA polymerase complex;0.00315928425986476!GO:0000428;DNA-directed RNA polymerase complex;0.00315928425986476!GO:0043068;positive regulation of programmed cell death;0.00316022995530873!GO:0046966;thyroid hormone receptor binding;0.00325739907621856!GO:0031410;cytoplasmic vesicle;0.0032580182790596!GO:0030663;COPI coated vesicle membrane;0.00341979422692042!GO:0030126;COPI vesicle coat;0.00341979422692042!GO:0019219;regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;0.00346274630506086!GO:0051098;regulation of binding;0.00358049853816826!GO:0016859;cis-trans isomerase activity;0.0036109269245899!GO:0005838;proteasome regulatory particle (sensu Eukaryota);0.00366115762666581!GO:0043624;cellular protein complex disassembly;0.00366873645290148!GO:0030029;actin filament-based process;0.00369645394168181!GO:0016281;eukaryotic translation initiation factor 4F complex;0.00371888169699951!GO:0006275;regulation of DNA replication;0.00376917998593062!GO:0000226;microtubule cytoskeleton organization and biogenesis;0.00400481100446153!GO:0030119;AP-type membrane coat adaptor complex;0.0041071733209678!GO:0005874;microtubule;0.00418153090974753!GO:0045859;regulation of protein kinase activity;0.00418153090974753!GO:0016272;prefoldin complex;0.00432050345115748!GO:0009889;regulation of biosynthetic process;0.0044368295707928!GO:0030137;COPI-coated vesicle;0.00454298084134674!GO:0015405;P-P-bond-hydrolysis-driven transmembrane transporter activity;0.00467853198881575!GO:0015399;primary active transmembrane transporter activity;0.00467853198881575!GO:0005876;spindle microtubule;0.00473198547626032!GO:0006338;chromatin remodeling;0.00488944888981639!GO:0009112;nucleobase metabolic process;0.00497706823479455!GO:0031968;organelle outer membrane;0.00515340767323823!GO:0004674;protein serine/threonine kinase activity;0.00540306143813876!GO:0048487;beta-tubulin binding;0.00563814295065222!GO:0043022;ribosome binding;0.00566114051631658!GO:0000228;nuclear chromosome;0.00574692438796299!GO:0019867;outer membrane;0.00575261895724996!GO:0000792;heterochromatin;0.00635580365438432!GO:0030131;clathrin adaptor complex;0.00645420690705938!GO:0007017;microtubule-based process;0.00646225565728231!GO:0051087;chaperone binding;0.00648150658091317!GO:0005741;mitochondrial outer membrane;0.00668845062526461!GO:0030518;steroid hormone receptor signaling pathway;0.00681565012131216!GO:0008022;protein C-terminus binding;0.00690302980447641!GO:0032984;macromolecular complex disassembly;0.00696683066701032!GO:0030176;integral to endoplasmic reticulum membrane;0.00718355382923573!GO:0031325;positive regulation of cellular metabolic process;0.00728329435461279!GO:0051101;regulation of DNA binding;0.00741075562312964!GO:0040008;regulation of growth;0.00741610187621785!GO:0000323;lytic vacuole;0.00751956178778455!GO:0005764;lysosome;0.00751956178778455!GO:0006890;retrograde vesicle-mediated transport, Golgi to ER;0.00767300260258839!GO:0042770;DNA damage response, signal transduction;0.00785914311922487!GO:0031124;mRNA 3'-end processing;0.00790539469108417!GO:0004518;nuclease activity;0.0079788203877661!GO:0045944;positive regulation of transcription from RNA polymerase II promoter;0.00798991565768676!GO:0006595;polyamine metabolic process;0.00816484992385432!GO:0008276;protein methyltransferase activity;0.00819042085382148!GO:0017166;vinculin binding;0.00825054702589684!GO:0008408;3'-5' exonuclease activity;0.00827298067060156!GO:0015980;energy derivation by oxidation of organic compounds;0.00877632103828549!GO:0015631;tubulin binding;0.00877771475006544!GO:0042393;histone binding;0.00882837813839715!GO:0000178;exosome (RNase complex);0.00883657570900414!GO:0030031;cell projection biogenesis;0.00886110596201513!GO:0008234;cysteine-type peptidase activity;0.00911619494438854!GO:0008180;signalosome;0.00923257853058744!GO:0016584;nucleosome positioning;0.00924282809204586!GO:0000922;spindle pole;0.0093978931912012!GO:0016791;phosphoric monoester hydrolase activity;0.00948367289420075!GO:0000184;mRNA catabolic process, nonsense-mediated decay;0.00949517762250133!GO:0033673;negative regulation of kinase activity;0.00951660235231005!GO:0006469;negative regulation of protein kinase activity;0.00951660235231005!GO:0046467;membrane lipid biosynthetic process;0.00951660235231005!GO:0046822;regulation of nucleocytoplasmic transport;0.0101202625505677!GO:0008757;S-adenosylmethionine-dependent methyltransferase activity;0.0102093684694589!GO:0009165;nucleotide biosynthetic process;0.0102318885676467!GO:0043414;biopolymer methylation;0.010241858482457!GO:0005832;chaperonin-containing T-complex;0.0103921169799484!GO:0048500;signal recognition particle;0.0104185191539394!GO:0004532;exoribonuclease activity;0.0107953540898438!GO:0016896;exoribonuclease activity, producing 5'-phosphomonoesters;0.0107953540898438!GO:0050681;androgen receptor binding;0.0107953540898438!GO:0016044;membrane organization and biogenesis;0.0109599628242348!GO:0032774;RNA biosynthetic process;0.011144280435752!GO:0043241;protein complex disassembly;0.0114107068260103!GO:0007242;intracellular signaling cascade;0.0118106149975504!GO:0007006;mitochondrial membrane organization and biogenesis;0.0118117675320182!GO:0032200;telomere organization and biogenesis;0.0119649612111314!GO:0000723;telomere maintenance;0.0119649612111314!GO:0005669;transcription factor TFIID complex;0.0125190137995563!GO:0008047;enzyme activator activity;0.0125388448848904!GO:0008283;cell proliferation;0.0125785037976411!GO:0031529;ruffle organization and biogenesis;0.0125785037976411!GO:0007050;cell cycle arrest;0.0125785037976411!GO:0006351;transcription, DNA-dependent;0.0127636063619525!GO:0030133;transport vesicle;0.0127696561325101!GO:0006818;hydrogen transport;0.0132307407342553!GO:0016796;exonuclease activity, active with either ribo- or deoxyribonucleic acids and producing 5'-phosphomonoesters;0.0133245391257571!GO:0051348;negative regulation of transferase activity;0.0133755171301288!GO:0005665;DNA-directed RNA polymerase II, core complex;0.0134268586130869!GO:0032259;methylation;0.0134612205407265!GO:0015992;proton transport;0.0134612205407265!GO:0043601;nuclear replisome;0.0135084855688554!GO:0030894;replisome;0.0135084855688554!GO:0043189;H4/H2A histone acetyltransferase complex;0.0137518524914809!GO:0008312;7S RNA binding;0.0138215592971651!GO:0009119;ribonucleoside metabolic process;0.0140084459606046!GO:0005850;eukaryotic translation initiation factor 2 complex;0.0141093100529539!GO:0030658;transport vesicle membrane;0.0142186783060824!GO:0006367;transcription initiation from RNA polymerase II promoter;0.0142276286639838!GO:0006144;purine base metabolic process;0.0144134697220123!GO:0030132;clathrin coat of coated pit;0.0144492974091782!GO:0000725;recombinational repair;0.0144492974091782!GO:0000724;double-strand break repair via homologous recombination;0.0144492974091782!GO:0006270;DNA replication initiation;0.0146339999054431!GO:0006506;GPI anchor biosynthetic process;0.0146339999054431!GO:0007346;regulation of progression through mitotic cell cycle;0.0146339999054431!GO:0005786;signal recognition particle, endoplasmic reticulum targeting;0.0148415139712775!GO:0030032;lamellipodium biogenesis;0.0149012397166246!GO:0043433;negative regulation of transcription factor activity;0.0154781245737306!GO:0005663;DNA replication factor C complex;0.0155399408243829!GO:0000781;chromosome, telomeric region;0.0156954492139407!GO:0006376;mRNA splice site selection;0.0159725278320728!GO:0000389;nuclear mRNA 3'-splice site recognition;0.0159725278320728!GO:0046128;purine ribonucleoside metabolic process;0.0164739617976291!GO:0042278;purine nucleoside metabolic process;0.0164739617976291!GO:0005853;eukaryotic translation elongation factor 1 complex;0.0165607835667353!GO:0035267;NuA4 histone acetyltransferase complex;0.0165920503841431!GO:0051540;metal cluster binding;0.016726677162241!GO:0051536;iron-sulfur cluster binding;0.016726677162241!GO:0006497;protein amino acid lipidation;0.0171376857138822!GO:0046982;protein heterodimerization activity;0.0172501752057283!GO:0046483;heterocycle metabolic process;0.0172608847705254!GO:0000086;G2/M transition of mitotic cell cycle;0.0176013152082205!GO:0043161;proteasomal ubiquitin-dependent protein catabolic process;0.0179132573451279!GO:0045792;negative regulation of cell size;0.0180514318580139!GO:0006091;generation of precursor metabolites and energy;0.0181758626449!GO:0000209;protein polyubiquitination;0.0194753199746714!GO:0005869;dynactin complex;0.0194927330612158!GO:0006505;GPI anchor metabolic process;0.0196685870414511!GO:0031901;early endosome membrane;0.0197171970951236!GO:0008629;induction of apoptosis by intracellular signals;0.0197171970951236!GO:0006354;RNA elongation;0.0198608224134401!GO:0022411;cellular component disassembly;0.0198608224134401!GO:0009451;RNA modification;0.0198608224134401!GO:0005791;rough endoplasmic reticulum;0.0199068191420738!GO:0031625;ubiquitin protein ligase binding;0.0199847706534949!GO:0019900;kinase binding;0.02024000451662!GO:0006284;base-excision repair;0.0205018321783358!GO:0008538;proteasome activator activity;0.0205018321783358!GO:0008097;5S rRNA binding;0.0206379272934125!GO:0004576;oligosaccharyl transferase activity;0.0207491554147969!GO:0030308;negative regulation of cell growth;0.0209069691820237!GO:0000339;RNA cap binding;0.0210654047642984!GO:0048146;positive regulation of fibroblast proliferation;0.0214739047230661!GO:0051539;4 iron, 4 sulfur cluster binding;0.0214945842206452!GO:0006614;SRP-dependent cotranslational protein targeting to membrane;0.0216773951697649!GO:0045047;protein targeting to ER;0.0216773951697649!GO:0009303;rRNA transcription;0.0216968452154927!GO:0040029;regulation of gene expression, epigenetic;0.0217313320731552!GO:0005905;coated pit;0.0217467792670996!GO:0003725;double-stranded RNA binding;0.0217934768537132!GO:0031570;DNA integrity checkpoint;0.0221116903556209!GO:0007004;telomere maintenance via telomerase;0.0226637864485452!GO:0000123;histone acetyltransferase complex;0.0229054907259487!GO:0030522;intracellular receptor-mediated signaling pathway;0.0230353436317155!GO:0031123;RNA 3'-end processing;0.023884865546043!GO:0048144;fibroblast proliferation;0.0246313103480947!GO:0048145;regulation of fibroblast proliferation;0.0246313103480947!GO:0043284;biopolymer biosynthetic process;0.0248466251476685!GO:0050662;coenzyme binding;0.0250905181349606!GO:0001726;ruffle;0.0251397831089543!GO:0030330;DNA damage response, signal transduction by p53 class mediator;0.0260640092395758!GO:0006650;glycerophospholipid metabolic process;0.0264334823619404!GO:0030660;Golgi-associated vesicle membrane;0.0265827848686571!GO:0022415;viral reproductive process;0.0267633994800226!GO:0008250;oligosaccharyl transferase complex;0.0271539632786169!GO:0032906;transforming growth factor-beta2 production;0.0273691006683227!GO:0032909;regulation of transforming growth factor-beta2 production;0.0273691006683227!GO:0005758;mitochondrial intermembrane space;0.0273922393094504!GO:0003711;transcription elongation regulator activity;0.0286796112220452!GO:0016311;dephosphorylation;0.0292366063769818!GO:0030384;phosphoinositide metabolic process;0.0292366063769818!GO:0051287;NAD binding;0.0292744605075075!GO:0016862;intramolecular oxidoreductase activity, interconverting keto- and enol-groups;0.0292744605075075!GO:0006289;nucleotide-excision repair;0.0293359353331841!GO:0019783;small conjugating protein-specific protease activity;0.0293544320536947!GO:0051059;NF-kappaB binding;0.0295027020828189!GO:0006368;RNA elongation from RNA polymerase II promoter;0.0297431258991749!GO:0030027;lamellipodium;0.0298133458164599!GO:0045926;negative regulation of growth;0.0306622194291892!GO:0016491;oxidoreductase activity;0.030932523017279!GO:0001952;regulation of cell-matrix adhesion;0.0309589864859147!GO:0001836;release of cytochrome c from mitochondria;0.0317646844973449!GO:0006378;mRNA polyadenylation;0.0320850565154579!GO:0019901;protein kinase binding;0.0325252478092135!GO:0043492;ATPase activity, coupled to movement of substances;0.0326840779387832!GO:0030134;ER to Golgi transport vesicle;0.0331857156867557!GO:0004721;phosphoprotein phosphatase activity;0.0338457861496367!GO:0008426;protein kinase C inhibitor activity;0.0340922874185599!GO:0031970;organelle envelope lumen;0.0356748527908133!GO:0042626;ATPase activity, coupled to transmembrane movement of substances;0.0358761840331482!GO:0019205;nucleobase, nucleoside, nucleotide kinase activity;0.0359619166358525!GO:0045449;regulation of transcription;0.0360085425433579!GO:0006360;transcription from RNA polymerase I promoter;0.0363349979209168!GO:0044454;nuclear chromosome part;0.0363704569337372!GO:0008637;apoptotic mitochondrial changes;0.0376897200694856!GO:0004843;ubiquitin-specific protease activity;0.0377279879391794!GO:0004579;dolichyl-diphosphooligosaccharide-protein glycotransferase activity;0.0384948225521271!GO:0000118;histone deacetylase complex;0.0385049638648324!GO:0031902;late endosome membrane;0.0387068505931372!GO:0008243;plasminogen activator activity;0.0390719754522372!GO:0000175;3'-5'-exoribonuclease activity;0.03969720053374!GO:0008320;protein transmembrane transporter activity;0.0402454835607608!GO:0004003;ATP-dependent DNA helicase activity;0.0403400692211339!GO:0006400;tRNA modification;0.0403921254221648!GO:0006278;RNA-dependent DNA replication;0.0403921254221648!GO:0000790;nuclear chromatin;0.0416662946537207!GO:0006520;amino acid metabolic process;0.0416760922739444!GO:0016820;hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances;0.0420324510596513!GO:0006509;membrane protein ectodomain proteolysis;0.0420324510596513!GO:0033619;membrane protein proteolysis;0.0420324510596513!GO:0004680;casein kinase activity;0.0420324510596513!GO:0017134;fibroblast growth factor binding;0.0420324510596513!GO:0016676;oxidoreductase activity, acting on heme group of donors, oxygen as acceptor;0.0420324510596513!GO:0015002;heme-copper terminal oxidase activity;0.0420324510596513!GO:0016675;oxidoreductase activity, acting on heme group of donors;0.0420324510596513!GO:0004129;cytochrome-c oxidase activity;0.0420324510596513!GO:0042158;lipoprotein biosynthetic process;0.042298775015371!GO:0000152;nuclear ubiquitin ligase complex;0.0423567886608508!GO:0043550;regulation of lipid kinase activity;0.0430535919982075!GO:0030127;COPII vesicle coat;0.0430888183721852!GO:0012507;ER to Golgi transport vesicle membrane;0.0430888183721852!GO:0007021;tubulin folding;0.0436383382314032!GO:0004177;aminopeptidase activity;0.04405395603769!GO:0030374;ligand-dependent nuclear receptor transcription coactivator activity;0.0442105461510362!GO:0006301;postreplication repair;0.0450114896034884!GO:0002763;positive regulation of myeloid leukocyte differentiation;0.0452411999948603!GO:0006356;regulation of transcription from RNA polymerase I promoter;0.0453860299213986!GO:0033170;DNA-protein loading ATPase activity;0.0456898336737225!GO:0003689;DNA clamp loader activity;0.0456898336737225!GO:0030125;clathrin vesicle coat;0.0456898336737225!GO:0030665;clathrin coated vesicle membrane;0.0456898336737225!GO:0000819;sister chromatid segregation;0.0458159079820858!GO:0030433;ER-associated protein catabolic process;0.0466103733242916!GO:0006515;misfolded or incompletely synthesized protein catabolic process;0.0466103733242916!GO:0007007;inner mitochondrial membrane organization and biogenesis;0.0472522778800287!GO:0006984;ER-nuclear signaling pathway;0.0479779397400513!GO:0000726;non-recombinational repair;0.0482598702432304!GO:0005856;cytoskeleton;0.0483601112733037!GO:0005784;translocon complex;0.0489084916270204!GO:0006541;glutamine metabolic process;0.049132081792307!GO:0022408;negative regulation of cell-cell adhesion;0.0496114273964527!GO:0035035;histone acetyltransferase binding;0.0496114273964527!GO:0031371;ubiquitin conjugating enzyme complex;0.0496114273964527!GO:0030100;regulation of endocytosis;0.0496321717175243 | |||
|sample_id=10544 | |sample_id=10544 | ||
|sample_note= | |sample_note= | ||
| Line 76: | Line 99: | ||
|sample_tissue=tongue | |sample_tissue=tongue | ||
|top_motifs=SNAI1..3:1.80108432315;ZEB1:1.70974429196;POU2F1..3:1.62265907434;TP53:1.50674626951;bHLH_family:1.50058371009;NKX2-2,8:1.43654743667;E2F1..5:1.33554255393;FOXQ1:1.25121895835;FOX{I1,J2}:1.14475322113;FOXM1:1.12853761786;TBX4,5:1.0145076331;TEAD1:0.891248331337;MYOD1:0.890083446729;TFDP1:0.872911148374;ELK1,4_GABP{A,B1}:0.861687741999;CDC5L:0.803230928092;PAX8:0.767201265879;NKX2-1,4:0.752461676331;MYB:0.737140950023;AIRE:0.704290436282;NKX6-1,2:0.680952633305;FOXD3:0.622114826364;OCT4_SOX2{dimer}:0.576587852992;TFAP2{A,C}:0.572515288338;RXR{A,B,G}:0.572073077329;ESR1:0.566671102963;HOXA9_MEIS1:0.537503340594;XCPE1{core}:0.531719142234;FOS_FOS{B,L1}_JUN{B,D}:0.50633171805;ADNP_IRX_SIX_ZHX:0.480242996984;PAX4:0.467733219346;BREu{core}:0.46466825313;BACH2:0.428285488429;MED-1{core}:0.425899195534;GZF1:0.42480035946;PITX1..3:0.422902372026;FOXL1:0.418404934862;NFE2:0.41509522586;ZNF384:0.392184881841;HOX{A5,B5}:0.371349883006;POU1F1:0.364130334584;NKX3-1:0.363028847125;CEBPA,B_DDIT3:0.34407407994;TFAP2B:0.341792037586;HMGA1,2:0.321849192482;CRX:0.314603669324;NKX3-2:0.30380430647;EGR1..3:0.296976407601;ONECUT1,2:0.258837952947;PDX1:0.229821236356;UFEwm:0.224104510145;IKZF1:0.221978127286;GLI1..3:0.216276675842;HSF1,2:0.205696824945;AHR_ARNT_ARNT2:0.19595034717;LEF1_TCF7_TCF7L1,2:0.186167081953;EN1,2:0.171562549379;ZNF148:0.154419275616;RXR{A,B,G}_{NR1H2,PPAR}dimers:0.145419914968;ARID5B:0.14103040089;CREB1:0.135687140263;PAX5:0.13285106633;ZFP161:0.128021696473;FOSL2:0.119738574603;IRF7:0.118714214161;PAX2:0.111866811182;RFX2..5_RFXANK_RFXAP:0.0771531830693;TLX1..3_NFIC{dimer}:0.0633748902707;PBX1:0.0511797803169;ATF5_CREB3:0.0298954910169;HNF1A:0.0294186952614;ZIC1..3:0.0268453503001;ALX4:0.01455916564;HLF:0.013416801551;TBP:0.0104817124571;VSX1,2:0.0068282852558;FOXP1:0.00393195075503;NANOG:0.00288062031667;NR6A1:-0.00430257138165;POU6F1:-0.00915341840216;MTF1:-0.0171754796553;HOX{A6,A7,B6,B7}:-0.019989682288;ATF4:-0.0227568767762;ESRRA:-0.0300277365117;STAT5{A,B}:-0.0332721113948;PPARG:-0.0364001980267;ZBTB16:-0.0434589359053;FOX{D1,D2}:-0.0630176532871;ZNF423:-0.0711951777955;GTF2I:-0.0720884612084;YY1:-0.0807004822604;PAX3,7:-0.0809818550842;NKX2-3_NKX2-5:-0.083026545106;NFY{A,B,C}:-0.0868224826538;RBPJ:-0.0954625434133;RREB1:-0.0996547981756;T:-0.103570335096;TOPORS:-0.115531576884;SP1:-0.12999772798;ZBTB6:-0.134578574848;SRF:-0.141681184333;NFKB1_REL_RELA:-0.142253120533;MAZ:-0.142615284167;ZNF143:-0.143757047072;HNF4A_NR2F1,2:-0.155375965076;LHX3,4:-0.159900856436;RFX1:-0.168929797941;SOX17:-0.172407338285;NFIL3:-0.173841396378;PRDM1:-0.176364970245;MEF2{A,B,C,D}:-0.185644522293;TEF:-0.189141508209;POU5F1:-0.192382533375;PAX1,9:-0.20093768136;GTF2A1,2:-0.203933467852;STAT2,4,6:-0.208649442222;SOX2:-0.213950852453;REST:-0.216583692553;FOX{F1,F2,J1}:-0.235873036143;HOX{A4,D4}:-0.237357807903;IRF1,2:-0.248708657621;GFI1B:-0.25142784472;IKZF2:-0.261673276209;HIC1:-0.263461098877;ELF1,2,4:-0.272790475395;SPIB:-0.2749553851;ALX1:-0.279598807959;FOXN1:-0.28130128262;PAX6:-0.291180859966;TFCP2:-0.292503382038;KLF4:-0.299829108302;FOXO1,3,4:-0.306433858861;NFE2L1:-0.320321874884;ATF2:-0.33579823893;TAL1_TCF{3,4,12}:-0.339562554052;NRF1:-0.344631787854;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:-0.347765519005;HAND1,2:-0.353794755361;CUX2:-0.355059949425;GATA4:-0.364214073688;HBP1_HMGB_SSRP1_UBTF:-0.375046868978;MTE{core}:-0.377704992733;RUNX1..3:-0.384595176999;NR5A1,2:-0.397462264522;DMAP1_NCOR{1,2}_SMARC:-0.437432690029;LMO2:-0.448006054837;ETS1,2:-0.486513144965;BPTF:-0.490177214591;FOXP3:-0.491545296553;GFI1:-0.500152128117;FOXA2:-0.516768549405;RXRA_VDR{dimer}:-0.523273397405;MZF1:-0.527192701744;POU3F1..4:-0.529854265283;DBP:-0.536040038514;PATZ1:-0.538349213644;NR1H4:-0.540610532407;NFE2L2:-0.553909152303;HIF1A:-0.568028986293;GCM1,2:-0.572647427305;SOX{8,9,10}:-0.573005554364;XBP1:-0.574276234335;EVI1:-0.578362817727;SPI1:-0.602668413557;NHLH1,2:-0.605288514947;SOX5:-0.605917209689;MYBL2:-0.624990428375;CDX1,2,4:-0.631986751186;GATA6:-0.637725783863;PRRX1,2:-0.640378491817;TLX2:-0.710072532038;HES1:-0.730859064729;AR:-0.760201104334;EP300:-0.801150605998;ZNF238:-0.801531314564;MYFfamily:-0.830976598557;NFATC1..3:-0.859273426365;SMAD1..7,9:-0.860502889715;SREBF1,2:-0.863554133966;RORA:-0.951436031619;TGIF1:-1.00173387312;NFIX:-1.0038677119;EBF1:-1.03450683771;HMX1:-1.05158315066;STAT1,3:-1.08167241213;JUN:-1.0963894699;MAFB:-1.0965190389;NR3C1:-1.16050675705;TFAP4:-1.19583868264;ATF6:-1.29530224686;NANOG{mouse}:-1.4277760181;SPZ1:-1.52993556027 | |top_motifs=SNAI1..3:1.80108432315;ZEB1:1.70974429196;POU2F1..3:1.62265907434;TP53:1.50674626951;bHLH_family:1.50058371009;NKX2-2,8:1.43654743667;E2F1..5:1.33554255393;FOXQ1:1.25121895835;FOX{I1,J2}:1.14475322113;FOXM1:1.12853761786;TBX4,5:1.0145076331;TEAD1:0.891248331337;MYOD1:0.890083446729;TFDP1:0.872911148374;ELK1,4_GABP{A,B1}:0.861687741999;CDC5L:0.803230928092;PAX8:0.767201265879;NKX2-1,4:0.752461676331;MYB:0.737140950023;AIRE:0.704290436282;NKX6-1,2:0.680952633305;FOXD3:0.622114826364;OCT4_SOX2{dimer}:0.576587852992;TFAP2{A,C}:0.572515288338;RXR{A,B,G}:0.572073077329;ESR1:0.566671102963;HOXA9_MEIS1:0.537503340594;XCPE1{core}:0.531719142234;FOS_FOS{B,L1}_JUN{B,D}:0.50633171805;ADNP_IRX_SIX_ZHX:0.480242996984;PAX4:0.467733219346;BREu{core}:0.46466825313;BACH2:0.428285488429;MED-1{core}:0.425899195534;GZF1:0.42480035946;PITX1..3:0.422902372026;FOXL1:0.418404934862;NFE2:0.41509522586;ZNF384:0.392184881841;HOX{A5,B5}:0.371349883006;POU1F1:0.364130334584;NKX3-1:0.363028847125;CEBPA,B_DDIT3:0.34407407994;TFAP2B:0.341792037586;HMGA1,2:0.321849192482;CRX:0.314603669324;NKX3-2:0.30380430647;EGR1..3:0.296976407601;ONECUT1,2:0.258837952947;PDX1:0.229821236356;UFEwm:0.224104510145;IKZF1:0.221978127286;GLI1..3:0.216276675842;HSF1,2:0.205696824945;AHR_ARNT_ARNT2:0.19595034717;LEF1_TCF7_TCF7L1,2:0.186167081953;EN1,2:0.171562549379;ZNF148:0.154419275616;RXR{A,B,G}_{NR1H2,PPAR}dimers:0.145419914968;ARID5B:0.14103040089;CREB1:0.135687140263;PAX5:0.13285106633;ZFP161:0.128021696473;FOSL2:0.119738574603;IRF7:0.118714214161;PAX2:0.111866811182;RFX2..5_RFXANK_RFXAP:0.0771531830693;TLX1..3_NFIC{dimer}:0.0633748902707;PBX1:0.0511797803169;ATF5_CREB3:0.0298954910169;HNF1A:0.0294186952614;ZIC1..3:0.0268453503001;ALX4:0.01455916564;HLF:0.013416801551;TBP:0.0104817124571;VSX1,2:0.0068282852558;FOXP1:0.00393195075503;NANOG:0.00288062031667;NR6A1:-0.00430257138165;POU6F1:-0.00915341840216;MTF1:-0.0171754796553;HOX{A6,A7,B6,B7}:-0.019989682288;ATF4:-0.0227568767762;ESRRA:-0.0300277365117;STAT5{A,B}:-0.0332721113948;PPARG:-0.0364001980267;ZBTB16:-0.0434589359053;FOX{D1,D2}:-0.0630176532871;ZNF423:-0.0711951777955;GTF2I:-0.0720884612084;YY1:-0.0807004822604;PAX3,7:-0.0809818550842;NKX2-3_NKX2-5:-0.083026545106;NFY{A,B,C}:-0.0868224826538;RBPJ:-0.0954625434133;RREB1:-0.0996547981756;T:-0.103570335096;TOPORS:-0.115531576884;SP1:-0.12999772798;ZBTB6:-0.134578574848;SRF:-0.141681184333;NFKB1_REL_RELA:-0.142253120533;MAZ:-0.142615284167;ZNF143:-0.143757047072;HNF4A_NR2F1,2:-0.155375965076;LHX3,4:-0.159900856436;RFX1:-0.168929797941;SOX17:-0.172407338285;NFIL3:-0.173841396378;PRDM1:-0.176364970245;MEF2{A,B,C,D}:-0.185644522293;TEF:-0.189141508209;POU5F1:-0.192382533375;PAX1,9:-0.20093768136;GTF2A1,2:-0.203933467852;STAT2,4,6:-0.208649442222;SOX2:-0.213950852453;REST:-0.216583692553;FOX{F1,F2,J1}:-0.235873036143;HOX{A4,D4}:-0.237357807903;IRF1,2:-0.248708657621;GFI1B:-0.25142784472;IKZF2:-0.261673276209;HIC1:-0.263461098877;ELF1,2,4:-0.272790475395;SPIB:-0.2749553851;ALX1:-0.279598807959;FOXN1:-0.28130128262;PAX6:-0.291180859966;TFCP2:-0.292503382038;KLF4:-0.299829108302;FOXO1,3,4:-0.306433858861;NFE2L1:-0.320321874884;ATF2:-0.33579823893;TAL1_TCF{3,4,12}:-0.339562554052;NRF1:-0.344631787854;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:-0.347765519005;HAND1,2:-0.353794755361;CUX2:-0.355059949425;GATA4:-0.364214073688;HBP1_HMGB_SSRP1_UBTF:-0.375046868978;MTE{core}:-0.377704992733;RUNX1..3:-0.384595176999;NR5A1,2:-0.397462264522;DMAP1_NCOR{1,2}_SMARC:-0.437432690029;LMO2:-0.448006054837;ETS1,2:-0.486513144965;BPTF:-0.490177214591;FOXP3:-0.491545296553;GFI1:-0.500152128117;FOXA2:-0.516768549405;RXRA_VDR{dimer}:-0.523273397405;MZF1:-0.527192701744;POU3F1..4:-0.529854265283;DBP:-0.536040038514;PATZ1:-0.538349213644;NR1H4:-0.540610532407;NFE2L2:-0.553909152303;HIF1A:-0.568028986293;GCM1,2:-0.572647427305;SOX{8,9,10}:-0.573005554364;XBP1:-0.574276234335;EVI1:-0.578362817727;SPI1:-0.602668413557;NHLH1,2:-0.605288514947;SOX5:-0.605917209689;MYBL2:-0.624990428375;CDX1,2,4:-0.631986751186;GATA6:-0.637725783863;PRRX1,2:-0.640378491817;TLX2:-0.710072532038;HES1:-0.730859064729;AR:-0.760201104334;EP300:-0.801150605998;ZNF238:-0.801531314564;MYFfamily:-0.830976598557;NFATC1..3:-0.859273426365;SMAD1..7,9:-0.860502889715;SREBF1,2:-0.863554133966;RORA:-0.951436031619;TGIF1:-1.00173387312;NFIX:-1.0038677119;EBF1:-1.03450683771;HMX1:-1.05158315066;STAT1,3:-1.08167241213;JUN:-1.0963894699;MAFB:-1.0965190389;NR3C1:-1.16050675705;TFAP4:-1.19583868264;ATF6:-1.29530224686;NANOG{mouse}:-1.4277760181;SPZ1:-1.52993556027 | ||
|xref= | |||
|zenbu_report=https://fantom.gsc.riken.jp/zenbu/reports/#miRNA_expression_atlas_human;search_select_hide=table111:FF:10544-107H4;search_select_hide=table117:FF:10544-107H4 | |||
}} | }} | ||
Latest revision as of 14:28, 3 June 2020
| Name: | oral squamous cell carcinoma cell line:SAS |
|---|---|
| Species: | Human (Homo sapiens) |
| Library ID: | CNhs11810 |
| Sample type: | cell lines |
| Genomic View: | UCSC |
| RefEX: | Specific genes |
| CAGEd-oPOSSUM: | link |
| ZENBU report : | link |
| Additional information | ||||||||||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
Sample information
RNA information
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| CAGE Accession numbers | ||||||||||||||||||||||||||||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
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| Download raw sequence, BAM & CTSS | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
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Relative expression to median (log10)
Transcription factors with enriched expression in this sampleRanked list of transcription factor promoter expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.
Co-expression clusters with enriched expression in this sampleRanked list of co-expression cluster expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed. <br>Analyst:NA <br><br>link to dataset.<br>data
Repeat families with enriched expression in this sample<b>Summary:</b>Ranked list of repeat family expression in this sample relative tothe median expression in the FANTOM5 collection is shown. Value is log10transformed.<br><b>Analyst:</b>NA<br><br>link to dataset.<br>data
TFBS(DNA)motifs over-represented in proximal region of promoters active in this sample
JASPAR motifs<b>Summary:</b>Association of JASPAR motif to the promoter expression in thissample. Pearson's correlation between the number of TFBSs estimated byusing the position-weight matrix for each promoter and its expression isexpressed as Z-score by taking the ones based on random position-weightmatrix, and the tail probability of the normal distribution correspondingto the Z-score is taken as the resulting P-value. Lower P-value indicatesmore (non-random) association of the motif to promoter expression<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data
library id: CNhs11810
FANTOM5 phase1 novel unique motifs<b>Summary:</b>Association of the 169 novel and unique motifs discovered in FANTOM5 phase1 in this sample. Among the de-novo motifs discovered by DMF, HOMER,ChIPMunk, and ScanAll, only novel motifs are selected after comparison with known motif sets, and their clustering based on MACRO-APE resulted in169 novel and unique motifs. Their association to the promoter expression is evaluated in the same way to the JASPAR motif above<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data
library id: CNhs11810
| Novel motif | Logo | P-value |
|---|---|---|
| 1 | 1 | 0.881 |
| 10 | 10 | 0.842 |
| 100 | 100 | 0.684 |
| 101 | 101 | 0.198 |
| 102 | 102 | 0.304 |
| 103 | 103 | 0.376 |
| 104 | 104 | 0.29 |
| 105 | 105 | 0.848 |
| 106 | 106 | 0.237 |
| 107 | 107 | 0.0601 |
| 108 | 108 | 0.361 |
| 109 | 109 | 0.314 |
| 11 | 11 | 0.427 |
| 110 | 110 | 0.266 |
| 111 | 111 | 0.925 |
| 112 | 112 | 0.574 |
| 113 | 113 | 0.016 |
| 114 | 114 | 0.455 |
| 115 | 115 | 0.414 |
| 116 | 116 | 0.0856 |
| 117 | 117 | 0.601 |
| 118 | 118 | 0.327 |
| 119 | 119 | 0.623 |
| 12 | 12 | 0.531 |
| 120 | 120 | 0.0428 |
| 121 | 121 | 0.672 |
| 122 | 122 | 0.246 |
| 123 | 123 | 0.564 |
| 124 | 124 | 0.00655 |
| 125 | 125 | 0.727 |
| 126 | 126 | 0.643 |
| 127 | 127 | 0.439 |
| 128 | 128 | 0.0868 |
| 129 | 129 | 0.186 |
| 13 | 13 | 0.142 |
| 130 | 130 | 0.752 |
| 131 | 131 | 0.0993 |
| 132 | 132 | 0.648 |
| 133 | 133 | 0.0141 |
| 134 | 134 | 9.5436e-4 |
| 135 | 135 | 0.0162 |
| 136 | 136 | 0.0264 |
| 137 | 137 | 0.121 |
| 138 | 138 | 0.82 |
| 139 | 139 | 0.0649 |
| 14 | 14 | 0.881 |
| 140 | 140 | 0.722 |
| 141 | 141 | 0.754 |
| 142 | 142 | 0.662 |
| 143 | 143 | 0.0645 |
| 144 | 144 | 0.595 |
| 145 | 145 | 0.986 |
| 146 | 146 | 0.825 |
| 147 | 147 | 0.321 |
| 148 | 148 | 0.889 |
| 149 | 149 | 0.518 |
| 15 | 15 | 0.542 |
| 150 | 150 | 0.13 |
| 151 | 151 | 0.671 |
| 152 | 152 | 0.255 |
| 153 | 153 | 0.724 |
| 154 | 154 | 0.383 |
| 155 | 155 | 0.892 |
| 156 | 156 | 0.948 |
| 157 | 157 | 0.993 |
| 158 | 158 | 0.186 |
| 159 | 159 | 0.394 |
| 16 | 16 | 0.349 |
| 160 | 160 | 0.78 |
| 161 | 161 | 0.792 |
| 162 | 162 | 0.476 |
| 163 | 163 | 0.594 |
| 164 | 164 | 0.104 |
| 165 | 165 | 0.885 |
| 166 | 166 | 0.0633 |
| 167 | 167 | 0.331 |
| 168 | 168 | 0.536 |
| 169 | 169 | 0.828 |
| 17 | 17 | 0.355 |
| 18 | 18 | 0.497 |
| 19 | 19 | 0.0357 |
| 2 | 2 | 0.841 |
| 20 | 20 | 0.261 |
| 21 | 21 | 0.529 |
| 22 | 22 | 0.648 |
| 23 | 23 | 0.274 |
| 24 | 24 | 0.749 |
| 25 | 25 | 0.887 |
| 26 | 26 | 0.709 |
| 27 | 27 | 0.599 |
| 28 | 28 | 0.521 |
| 29 | 29 | 0.274 |
| 3 | 3 | 0.898 |
| 30 | 30 | 0.43 |
| 31 | 31 | 0.219 |
| 32 | 32 | 0.0013 |
| 33 | 33 | 0.143 |
| 34 | 34 | 0.069 |
| 35 | 35 | 0.197 |
| 36 | 36 | 0.651 |
| 37 | 37 | 0.555 |
| 38 | 38 | 0.953 |
| 39 | 39 | 0.528 |
| 4 | 4 | 0.515 |
| 40 | 40 | 0.586 |
| 41 | 41 | 0.114 |
| 42 | 42 | 0.932 |
| 43 | 43 | 0.0365 |
| 44 | 44 | 0.447 |
| 45 | 45 | 0.59 |
| 46 | 46 | 0.426 |
| 47 | 47 | 0.657 |
| 48 | 48 | 0.651 |
| 49 | 49 | 0.0362 |
| 5 | 5 | 0.0593 |
| 50 | 50 | 0.565 |
| 51 | 51 | 0.776 |
| 52 | 52 | 0.535 |
| 53 | 53 | 0.146 |
| 54 | 54 | 0.69 |
| 55 | 55 | 0.833 |
| 56 | 56 | 0.58 |
| 57 | 57 | 0.219 |
| 58 | 58 | 0.84 |
| 59 | 59 | 0.173 |
| 6 | 6 | 0.497 |
| 60 | 60 | 0.47 |
| 61 | 61 | 0.246 |
| 62 | 62 | 0.631 |
| 63 | 63 | 0.797 |
| 64 | 64 | 0.81 |
| 65 | 65 | 0.961 |
| 66 | 66 | 0.267 |
| 67 | 67 | 0.747 |
| 68 | 68 | 0.13 |
| 69 | 69 | 0.362 |
| 7 | 7 | 0.797 |
| 70 | 70 | 0.24 |
| 71 | 71 | 0.471 |
| 72 | 72 | 0.574 |
| 73 | 73 | 0.387 |
| 74 | 74 | 0.576 |
| 75 | 75 | 0.143 |
| 76 | 76 | 0.11 |
| 77 | 77 | 0.685 |
| 78 | 78 | 0.108 |
| 79 | 79 | 0.0793 |
| 8 | 8 | 0.97 |
| 80 | 80 | 0.192 |
| 81 | 81 | 0.0685 |
| 82 | 82 | 0.00331 |
| 83 | 83 | 0.502 |
| 84 | 84 | 0.703 |
| 85 | 85 | 0.00833 |
| 86 | 86 | 0.966 |
| 87 | 87 | 0.0662 |
| 88 | 88 | 0.773 |
| 89 | 89 | 0.342 |
| 9 | 9 | 0.396 |
| 90 | 90 | 0.17 |
| 91 | 91 | 0.141 |
| 92 | 92 | 0.371 |
| 93 | 93 | 0.542 |
| 94 | 94 | 0.192 |
| 95 | 95 | 0.158 |
| 96 | 96 | 0.194 |
| 97 | 97 | 0.679 |
| 98 | 98 | 0.22 |
| 99 | 99 | 0.948 |
de novo motifs identified by HOMER in promoters active in this sample<b>Summary:</b>The result of HOMER in this sample is shown.<br><b>Analyst:</b>NA <br>
library id: CNhs11810
FANTOM5 (FF) ontology
Direct parent terms
Ancestor terms (non development)<b>Summary:</b>Connected ontology terms with is_a, part_of or located_in relationship <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source data<br>data
CL: Cell type
0000000 (cell), 0000000 (cell)
0000003 (native cell)
0000548 (animal cell)
0000066 (epithelial cell)
0002371 (somatic cell)
0000076 (squamous epithelial cell)
0000255 (eukaryotic cell)
0002076 (endo-epithelial cell)
0002251 (epithelial cell of alimentary canal)
DOID: Disease
4 (disease)
162 (cancer)
14566 (disease of cellular proliferation)
0050687 (cell type cancer)
7 (disease of anatomical entity)
305 (carcinoma)
1749 (squamous cell carcinoma)
UBERON: Anatomy
0000468 (multi-cellular organism)
0001723 (tongue)
0003343 (mucosa of oral region)
0000033 (head)
0000974 (neck)
0001007 (digestive system)
0000344 (mucosa)
0004121 (ectoderm-derived structure)
0000064 (organ part)
0004119 (endoderm-derived structure)
0010314 (structure with developmental contribution from neural crest)
0000062 (organ)
0004111 (anatomical conduit)
0000475 (organism subdivision)
0000061 (anatomical structure)
0000465 (material anatomical entity)
0000481 (multi-tissue structure)
0004923 (organ component layer)
0000161 (orifice)
0001444 (subdivision of head)
0000477 (anatomical cluster)
0000467 (anatomical system)
0001062 (anatomical entity)
0000480 (anatomical group)
0000020 (sense organ)
0004785 (respiratory system mucosa)
0001032 (sensory system)
0003729 (mouth mucosa)
0010317 (germ layer / neural crest derived structure)
0001555 (digestive tract)
0001004 (respiratory system)
0000153 (anterior region of body)
0007811 (craniocervical region)
0000165 (mouth)
0004456 (entire sense organ system)
0000166 (oral opening)
0001033 (gustatory system)
FF: FANTOM5
0000102 (sample by type)
0000003 (cell line sample)
0000210 (human sample)
0000101 (sample by species)
0000001 (sample)
0100297 (carcinoma cell line sample)
0102024 (squamous cell carcinoma cell line sample)
0101120 (epithelial cell line sample)
0102211 (oral squamous cell carcinoma cell line sample)
0102027 (oral cancer cell line sample)
0102709 (head and neck squamous cell carcinoma cell line sample)
0100786 (tongue cancer cell line sample)
0103980 (tongue squamous cell carcinoma cell line sample)
0103981 (SAS cell sample)
Ancestor terms (development)<b>Summary:</b>Connected ontology terms with develops_from, derives_from or preceded_by relationship <br><b>Analyst:</b> Hideya Kawaji <br><br>link to source data<br>data
CL:0000223 (endodermal cell)
UBERON:0002532 (epiblast (generic))
UBERON:0006601 (presumptive ectoderm)
UBERON:0006595 (presumptive endoderm)
UBERON:0008814 (pharyngeal arch system)
UBERON:0010056 (future tongue)
UBERON:0010316 (germ layer / neural crest)
