FF:10842-111E5: Difference between revisions
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{{f5samples | {{f5samples | ||
|ancestors_in_anatomy_facet=UBERON: | |DRA_sample_Accession=CAGE@SAMD00004718 | ||
|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL: | |DRA_sample_Accession_RNASeq=RNA-Seq@SAMD00004718 | ||
|ancestors_in_disease_facet=DOID:0050615,DOID: | |accession_numbers=CAGE;DRX008008;DRR008880;DRZ000305;DRZ001690;DRZ011655;DRZ013040 | ||
|accession_numbers_RNASeq=RNA-Seq;DRX057148;DRR062907;DRZ007983 | |||
|ancestors_in_anatomy_facet=UBERON:0000468,UBERON:0002048,UBERON:0002100,UBERON:0000483,UBERON:0000479,UBERON:0000064,UBERON:0004119,UBERON:0000466,UBERON:0000062,UBERON:0004111,UBERON:0000475,UBERON:0000061,UBERON:0000465,UBERON:0000063,UBERON:0004802,UBERON:0000025,UBERON:0005911,UBERON:0000477,UBERON:0000467,UBERON:0001062,UBERON:0000480,UBERON:0000119,UBERON:0009569,UBERON:0005178,UBERON:0000072,UBERON:0005177,UBERON:0004807,UBERON:0000117,UBERON:0000171,UBERON:0000115,UBERON:0000464,UBERON:0005181,UBERON:0010317,UBERON:0000065,UBERON:0000170,UBERON:0001004,UBERON:0002224,UBERON:0000915 | |||
|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000548,CL:0000066,CL:0000082,CL:0000255 | |||
|ancestors_in_disease_facet=DOID:4,DOID:0050686,DOID:0050615,DOID:162,DOID:14566,DOID:0050687,DOID:1324,DOID:305,DOID:1325,DOID:3905,DOID:5409,DOID:3904 | |||
|ancestors_in_ff_facet=FF:0000102,FF:0000003,FF:0000210,FF:0000101,FF:0000001,FF:0100297,FF:0100353,FF:0102061,FF:0101120,FF:0100762,FF:0102206,FF:0100189,FF:0103026 | |||
|comment= | |comment= | ||
|created_by= | |created_by= | ||
|creation_date= | |creation_date= | ||
|data_phase=2 | |||
|datafreeze_phase=2 | |||
|def= | |def= | ||
|expression_enrichment_score=chr14:57277178..57277203,-!p1@OTX2!2.92!833.68!OTX2;;chr2:182545234..182545252,-!p1@NEUROD1!2.68!480.22!NEUROD1;;chr19:48325184..48325211,+!p1@CRX!2.62!411.95!CRX;;chr5:134871645..134871660,-!p1@NEUROG1!2.15!138.74!NEUROG1;;chr13:72441315..72441454,-!p1@DACH1!1.96!174.15!DACH1;;chr2:45168875..45168916,+!p1@SIX3!1.95!87.95!SIX3;;chrX:85403445..85403479,+!p2@DACH2!1.86!70.91!DACH2;;chr15:76629123..76629151,+!p1@ISL2!1.81!70.14!ISL2;;chr2:239148671..239148686,-!p1@HES6!1.79!213.06!HES6;;chr3:24206971..24206999,-!p8@THRB!1.75!55.63!THRB;;chr14:29235961..29236008,+!p1@FOXG1!1.75!55.52!FOXG1;;chr19:47523058..47523114,+!p1@NPAS1!1.75!54.86!NPAS1;;chr4:41750057..41750078,-!p3@PHOX2B!1.74!53.54!PHOX2B;;chr2:5832508..5832524,+!p1@SOX11!1.72!51.89!SOX11;;chr1:165414325..165414369,-!p1@RXRG!1.72!51.12!RXRG;;chr15:57511609..57511651,+!p2@TCF12!1.69!79.16!TCF12;;chr14:57272369..57272391,-!p2@OTX2!1.69!47.82!OTX2;;chr10:69991865..69991870,-!p1@ATOH7!1.67!46.28!ATOH7;;chr2:45168834..45168847,+!p2@SIX3!1.64!42.44!SIX3;;chr14:29237009..29237049,+!p4@FOXG1!1.58!36.94!FOXG1;;chr4:41750731..41750748,-!p1@PHOX2B!1.56!35.40!PHOX2B;;chr11:63684602..63684664,-!p1@RCOR2!1.53!63.77!RCOR2;;chr9:14314131..14314147,-!p2@NFIB!1.50!162.71!NFIB;;chr20:20348740..20348757,+!p1@INSM1!1.48!29.13!INSM1;;chr11:125034640..125034655,+!p1@PKNOX2!1.43!25.95!PKNOX2;;chr13:72441074..72441172,-!p2@DACH1!1.42!25.29!DACH1;;chr12:54447599..54447630,+!p3@HOXC4!1.40!29.68!HOXC4;;chr1:216896752..216896778,-!p1@ESRRG!1.39!23.42!ESRRG;;chr4:81118647..81118666,+!p1@PRDM8!1.38!30.01!PRDM8;;chr14:57277098..57277116,-!p3@OTX2!1.38!23.20!OTX2;;chr7:35293685..35293718,-!p1@TBX20!1.38!22.98!TBX20;;chr1:160336851..160336868,+!p1@NHLH1!1.36!21.66!NHLH1;;chr20:62795951..62795965,+!p3@MYT1!1.34!21.11!MYT1;;chr1:180199393..180199426,+!p1@LHX4!1.33!20.56!LHX4;;chr1:10856694..10856715,-!p3@CASZ1!1.33!20.23!CASZ1;;chr4:41750922..41750939,-!p4@PHOX2B!1.32!19.68!PHOX2B;;chr14:29236269..29236285,+!p3@FOXG1!1.31!19.57!FOXG1;;chr15:37392724..37392757,-!p1@MEIS2!1.29!83.01!MEIS2;;chr1:10856665..10856683,-!p4@CASZ1!1.28!18.25!CASZ1;;chr2:74741569..74741620,+!p1@TLX2!1.27!17.81!TLX2;;chr7:73038839..73038862,-!p1@MLXIPL!1.26!17.26!MLXIPL;;chr8:10588010..10588030,-!p1@SOX7!1.26!17.15!SOX7;;chr13:72441506..72441562,-!p3@DACH1!1.25!16.60!DACH1;;chr3:52001448..52001478,-!p2@PCBP4!1.23!217.13!PCBP4;;chr13:37494365..37494381,-!p1@SMAD9!1.23!27.81!SMAD9;;chr2:45168856..45168867,+!p7@SIX3!1.21!15.39!SIX3;;chr3:24207039..24207050,-!p16@THRB!1.21!15.06!THRB;;chr18:55102598..55102623,+!p1@ONECUT2!1.19!14.51!ONECUT2;;chr5:134369905..134369972,-!p1@PITX1!1.18!21.88!PITX1;;chrX:84499081..84499115,+!p2@ZNF711!1.18!21.00!ZNF711;;chr15:76629097..76629120,+!p2@ISL2!1.17!15.28!ISL2;;chr2:182545282..182545294,-!p2@NEUROD1!1.17!13.74!NEUROD1;;chr8:53162037..53162058,-!p5@ST18!1.17!13.63!ST18;;chr12:54779511..54779577,-!p5@ZNF385A!1.17!13.63!ZNF385A;;chr1:40105299..40105326,-!p1@HEYL!1.15!12.97!HEYL;;chr12:54785074..54785122,-!p2@ZNF385A!1.13!19.13!ZNF385A;;chr8:128747757..128747800,+!p7@MYC!1.13!16.82!MYC;;chr4:41750047..41750056,-!p7@PHOX2B!1.13!12.42!PHOX2B;;chr4:41750839..41750850,-!p2@PHOX2B!1.12!12.20!PHOX2B;;chr2:45169193..45169219,+!p3@SIX3!1.12!12.09!SIX3;;chr1:41827095..41827155,+!p1@FOXO6!1.11!16.05!FOXO6;;chr2:45169143..45169167,+!p5@SIX3!1.11!11.76!SIX3;;chr12:55413751..55413765,+!p1@NEUROD4!1.11!11.76!NEUROD4;;chr2:182545296..182545307,-!p3@NEUROD1!1.09!11.43!NEUROD1;;chr19:46800289..46800327,+!p2@HIF3A!1.07!10.77!HIF3A;;chr2:5832493..5832507,+!p2@SOX11!1.07!10.66!SOX11;;chr1:216896780..216896800,-!p2@ESRRG!1.06!10.44!ESRRG;;chr9:14314106..14314119,-!p5@NFIB!1.05!18.58!NFIB;;chr1:165414227..165414242,-!p2@RXRG!1.05!10.11!RXRG;;chr8:128748308..128748324,+!p2@MYC!1.04!276.61!MYC;;chr1:247171347..247171366,-!p2@ZNF695!1.04!18.36!ZNF695;;chr8:128748470..128748487,+!p1@MYC!1.03!1076.10!MYC;;chr18:56532100..56532130,+!p1@ZNF532!1.03!18.25!ZNF532;;chr3:24207220..24207235,-!p18@THRB!1.03!9.67!THRB;;chr8:28748099..28748141,+!p2@HMBOX1!1.01!29.35!HMBOX1;;chr18:55102628..55102646,+!p2@ONECUT2!1.01!9.13!ONECUT2;;chr14:21562671..21562702,-!p8@ZNF219!1.01!9.13!ZNF219;;chr2:60780753..60780800,-!p1@BCL11A!1.00!44.86!BCL11A;;chr2:166326200..166326216,+!p1@CSRNP3!1.00!13.30!CSRNP3;;chr17:8027418..8027432,-!p1@HES7!1.00!8.91!HES7;;chr8:128747661..128747703,+!p6@MYC!0.99!11.87!MYC;;chr12:85673977..85674015,+!p1@ALX1!0.99!8.80!ALX1;;chr2:16080659..16080685,+!p1@MYCN!0.99!8.80!MYCN;;chr8:10588174..10588200,-!p3@SOX7!0.99!8.69!SOX7;;chr14:29234581..29234601,+!p2@FOXG1!0.99!8.69!FOXG1;;chr7:148581327..148581347,-!p2@EZH2!0.98!29.68!EZH2;;chr2:25475120..25475176,-!p2@DNMT3A!0.98!11.65!DNMT3A;;chr12:54393880..54393962,+!p1@HOXC9!0.98!8.58!HOXC9;;chr15:57511589..57511608,+!p4@TCF12!0.98!8.47!TCF12;;chr2:45168959..45168990,+!p6@SIX3!0.98!8.47!SIX3;;chr21:34144157..34144175,-!p3@GCFC1!0.97!13.63!GCFC1;;chr1:10856639..10856662,-!p2@CASZ1!0.97!8.36!CASZ1;;chr4:41750020..41750029,-!p9@PHOX2B!0.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| |expression_enrichment_score=chr14:57277178..57277203,-!p1@OTX2!2.92!833.68!OTX2;;chr2:182545234..182545252,-!p1@NEUROD1!2.68!480.22!NEUROD1;;chr19:48325184..48325211,+!p1@CRX!2.62!411.95!CRX;;chr5:134871645..134871660,-!p1@NEUROG1!2.15!138.74!NEUROG1;;chr13:72441315..72441454,-!p1@DACH1!1.96!174.15!DACH1;;chr2:45168875..45168916,+!p1@SIX3!1.95!87.95!SIX3;;chrX:85403445..85403479,+!p2@DACH2!1.86!70.91!DACH2;;chr15:76629123..76629151,+!p1@ISL2!1.81!70.14!ISL2;;chr2:239148671..239148686,-!p1@HES6!1.79!213.06!HES6;;chr3:24206971..24206999,-!p8@THRB!1.75!55.63!THRB;;chr14:29235961..29236008,+!p1@FOXG1!1.75!55.52!FOXG1;;chr19:47523058..47523114,+!p1@NPAS1!1.75!54.86!NPAS1;;chr4:41750057..41750078,-!p3@PHOX2B!1.74!53.54!PHOX2B;;chr2:5832508..5832524,+!p1@SOX11!1.72!51.89!SOX11;;chr1:165414325..165414369,-!p1@RXRG!1.72!51.12!RXRG;;chr15:57511609..57511651,+!p2@TCF12!1.69!79.16!TCF12;;chr14:57272369..57272391,-!p2@OTX2!1.69!47.82!OTX2;;chr10:69991865..69991870,-!p1@ATOH7!1.67!46.28!ATOH7;;chr2:45168834..45168847,+!p2@SIX3!1.64!42.44!SIX3;;chr14:29237009..29237049,+!p4@FOXG1!1.58!36.94!FOXG1;;chr4:41750731..41750748,-!p1@PHOX2B!1.56!35.40!PHOX2B;;chr11:63684602..63684664,-!p1@RCOR2!1.53!63.77!RCOR2;;chr9:14314131..14314147,-!p2@NFIB!1.50!162.71!NFIB;;chr20:20348740..20348757,+!p1@INSM1!1.48!29.13!INSM1;;chr11:125034640..125034655,+!p1@PKNOX2!1.43!25.95!PKNOX2;;chr13:72441074..72441172,-!p2@DACH1!1.42!25.29!DACH1;;chr12:54447599..54447630,+!p3@HOXC4!1.40!29.68!HOXC4;;chr1:216896752..216896778,-!p1@ESRRG!1.39!23.42!ESRRG;;chr4:81118647..81118666,+!p1@PRDM8!1.38!30.01!PRDM8;;chr14:57277098..57277116,-!p3@OTX2!1.38!23.20!OTX2;;chr7:35293685..35293718,-!p1@TBX20!1.38!22.98!TBX20;;chr1:160336851..160336868,+!p1@NHLH1!1.36!21.66!NHLH1;;chr20:62795951..62795965,+!p3@MYT1!1.34!21.11!MYT1;;chr1:180199393..180199426,+!p1@LHX4!1.33!20.56!LHX4;;chr1:10856694..10856715,-!p3@CASZ1!1.33!20.23!CASZ1;;chr4:41750922..41750939,-!p4@PHOX2B!1.32!19.68!PHOX2B;;chr14:29236269..29236285,+!p3@FOXG1!1.31!19.57!FOXG1;;chr15:37392724..37392757,-!p1@MEIS2!1.29!83.01!MEIS2;;chr1:10856665..10856683,-!p4@CASZ1!1.28!18.25!CASZ1;;chr2:74741569..74741620,+!p1@TLX2!1.27!17.81!TLX2;;chr7:73038839..73038862,-!p1@MLXIPL!1.26!17.26!MLXIPL;;chr8:10588010..10588030,-!p1@SOX7!1.26!17.15!SOX7;;chr13:72441506..72441562,-!p3@DACH1!1.25!16.60!DACH1;;chr3:52001448..52001478,-!p2@PCBP4!1.23!217.13!PCBP4;;chr13:37494365..37494381,-!p1@SMAD9!1.23!27.81!SMAD9;;chr2:45168856..45168867,+!p7@SIX3!1.21!15.39!SIX3;;chr3:24207039..24207050,-!p16@THRB!1.21!15.06!THRB;;chr18:55102598..55102623,+!p1@ONECUT2!1.19!14.51!ONECUT2;;chr5:134369905..134369972,-!p1@PITX1!1.18!21.88!PITX1;;chrX:84499081..84499115,+!p2@ZNF711!1.18!21.00!ZNF711;;chr15:76629097..76629120,+!p2@ISL2!1.17!15.28!ISL2;;chr2:182545282..182545294,-!p2@NEUROD1!1.17!13.74!NEUROD1;;chr8:53162037..53162058,-!p5@ST18!1.17!13.63!ST18;;chr12:54779511..54779577,-!p5@ZNF385A!1.17!13.63!ZNF385A;;chr1:40105299..40105326,-!p1@HEYL!1.15!12.97!HEYL;;chr12:54785074..54785122,-!p2@ZNF385A!1.13!19.13!ZNF385A;;chr8:128747757..128747800,+!p7@MYC!1.13!16.82!MYC;;chr4:41750047..41750056,-!p7@PHOX2B!1.13!12.42!PHOX2B;;chr4:41750839..41750850,-!p2@PHOX2B!1.12!12.20!PHOX2B;;chr2:45169193..45169219,+!p3@SIX3!1.12!12.09!SIX3;;chr1:41827095..41827155,+!p1@FOXO6!1.11!16.05!FOXO6;;chr2:45169143..45169167,+!p5@SIX3!1.11!11.76!SIX3;;chr12:55413751..55413765,+!p1@NEUROD4!1.11!11.76!NEUROD4;;chr2:182545296..182545307,-!p3@NEUROD1!1.09!11.43!NEUROD1;;chr19:46800289..46800327,+!p2@HIF3A!1.07!10.77!HIF3A;;chr2:5832493..5832507,+!p2@SOX11!1.07!10.66!SOX11;;chr1:216896780..216896800,-!p2@ESRRG!1.06!10.44!ESRRG;;chr9:14314106..14314119,-!p5@NFIB!1.05!18.58!NFIB;;chr1:165414227..165414242,-!p2@RXRG!1.05!10.11!RXRG;;chr8:128748308..128748324,+!p2@MYC!1.04!276.61!MYC;;chr1:247171347..247171366,-!p2@ZNF695!1.04!18.36!ZNF695;;chr8:128748470..128748487,+!p1@MYC!1.03!1076.10!MYC;;chr18:56532100..56532130,+!p1@ZNF532!1.03!18.25!ZNF532;;chr3:24207220..24207235,-!p18@THRB!1.03!9.67!THRB;;chr8:28748099..28748141,+!p2@HMBOX1!1.01!29.35!HMBOX1;;chr18:55102628..55102646,+!p2@ONECUT2!1.01!9.13!ONECUT2;;chr14:21562671..21562702,-!p8@ZNF219!1.01!9.13!ZNF219;;chr2:60780753..60780800,-!p1@BCL11A!1.00!44.86!BCL11A;;chr2:166326200..166326216,+!p1@CSRNP3!1.00!13.30!CSRNP3;;chr17:8027418..8027432,-!p1@HES7!1.00!8.91!HES7;;chr8:128747661..128747703,+!p6@MYC!0.99!11.87!MYC;;chr12:85673977..85674015,+!p1@ALX1!0.99!8.80!ALX1;;chr2:16080659..16080685,+!p1@MYCN!0.99!8.80!MYCN;;chr8:10588174..10588200,-!p3@SOX7!0.99!8.69!SOX7;;chr14:29234581..29234601,+!p2@FOXG1!0.99!8.69!FOXG1;;chr7:148581327..148581347,-!p2@EZH2!0.98!29.68!EZH2;;chr2:25475120..25475176,-!p2@DNMT3A!0.98!11.65!DNMT3A;;chr12:54393880..54393962,+!p1@HOXC9!0.98!8.58!HOXC9;;chr15:57511589..57511608,+!p4@TCF12!0.98!8.47!TCF12;;chr2:45168959..45168990,+!p6@SIX3!0.98!8.47!SIX3;;chr21:34144157..34144175,-!p3@GCFC1!0.97!13.63!GCFC1;;chr1:10856639..10856662,-!p2@CASZ1!0.97!8.36!CASZ1;;chr4:41750020..41750029,-!p9@PHOX2B!0.97!8.36!PHOX2B;;chr12:54447637..54447659,+!p4@HOXC4!0.97!8.25!HOXC4;;chr1:165414259..165414273,-!p6@RXRG!0.97!8.25!RXRG;;chrX:84498989..84499003,+!p1@ZNF711!0.96!11.32!ZNF711;;chr12:54431720..54431732,+!p13@HOXC4!0.96!8.14!HOXC4;;chr2:95963052..95963106,+!p1@KCNIP3!0.96!8.03!KCNIP3;;chr19:37096139..37096170,-!p2@ZNF529!0.95!22.87!ZNF529;;chr12:3068466..3068495,+!p3@TEAD4!0.95!17.48!TEAD4;;chr12:66218183..66218209,+!p4@HMGA2!0.95!15.50!HMGA2;;chr10:111967345..111967422,+!p1@MXI1!0.94!128.85!MXI1;;chr11:71955210..71955227,-!p1@PHOX2A!0.94!7.81!PHOX2A;;chr5:2751762..2751784,-!p1@IRX2!0.94!7.81!IRX2;;chr1:40367530..40367597,-!p1@MYCL1!0.93!14.07!MYCL1;;chr8:93115584..93115642,-!p5@RUNX1T1!0.93!7.59!RUNX1T1;;chr15:76629064..76629073,+!p3@ISL2!0.93!7.59!ISL2;;chr21:45682336..45682380,-!p5@DNMT3L!0.93!7.59!DNMT3L;;chr8:40755333..40755352,-!p1@ZMAT4!0.93!7.48!ZMAT4;;chr6:20402102..20402152,+!p1@E2F3!0.92!31.11!E2F3;;chr9:128509663..128509715,+!p1@PBX3!0.92!25.84!PBX3;;chr14:36003363..36003378,+!p1@INSM2!0.92!7.37!INSM2;;chr14:24553835..24553850,-!p1@NRL!0.92!7.26!NRL;;chr14:57277163..57277168,-!p4@OTX2!0.92!7.26!OTX2;;chr7:96634850..96634874,+!p3@DLX6!0.92!7.26!DLX6;;chr20:42295713..42295738,+!p2@MYBL2!0.91!44.20!MYBL2;;chr1:151032922..151032951,+!p2@MLLT11!0.91!12.20!MLLT11;;chr13:37494391..37494406,-!p5@SMAD9!0.91!7.15!SMAD9;;chr1:8763463..8763499,-!p6@RERE!0.90!19.68!RERE;;chr17:42295777..42295816,-!p7@UBTF!0.89!8.36!UBTF;;chr8:93107451..93107468,-!p2@RUNX1T1!0.89!6.71!RUNX1T1;;chr8:128750654..128750793,+!p3@MYC!0.88!27.49!MYC;;chr2:74229812..74229867,+!p1@TET3!0.88!17.26!TET3;;chr12:66218152..66218174,+!p10@HMGA2!0.88!7.04!HMGA2;;chr21:34144115..34144138,-!p2@GCFC1!0.87!19.68!GCFC1;;chr19:9609272..9609297,-!p1@ZNF560!0.87!6.49!ZNF560;;chr5:124082548..124082571,-!p9@ZNF608!0.87!6.38!ZNF608;;chr16:51185318..51185348,-!p2@SALL1!0.87!6.38!SALL1;;chr12:55413694..55413703,+!p2@NEUROD4!0.87!6.38!NEUROD4;;chr15:60884747..60884774,-!p3@RORA!0.86!15.94!RORA;;chr8:28347737..28347785,-!p1@FBXO16,p2@ZNF395!0.86!13.96!ZNF395;;chr19:24097675..24097699,+!p1@ZNF726!0.85!21.33!ZNF726;;chr19:20150301..20150321,-!p1@ZNF682!0.85!16.38!ZNF682;;chr14:21566540..21566580,-!p2@ZNF219!0.85!8.36!ZNF219;;chr18:56531584..56531646,+!p4@ZNF532!0.85!8.14!ZNF532;;chr1:8763440..8763460,-!p2@RERE!0.84!31.55!RERE;;chr2:60780607..60780624,-!p2@BCL11A!0.84!19.24!BCL11A;;chr1:43148625..43148710,+!p3@YBX1!0.84!10.99!YBX1;;chr6:135502408..135502459,+!p2@MYB!0.84!6.93!MYB;;chr16:4322948..4322975,-!p3@TFAP4!0.83!11.98!TFAP4;;chr2:182543197..182543218,-!p4@NEUROD1!0.83!5.83!NEUROD1;;chr8:128747729..128747748,+!p14@MYC!0.83!5.72!MYC;;chr2:60778035..60778060,-!p4@BCL11A!0.82!6.82!BCL11A;;chr19:17356697..17356762,-!p1@NR2F6!0.81!79.93!NR2F6;;chr20:48599506..48599526,+!p1@SNAI1!0.81!37.60!SNAI1;;chr22:19748231..19748317,+!p1@TBX1!0.81!5.50!TBX1;;chr5:158526917..158526932,-!p1@EBF1!0.80!13.96!EBF1;;chr16:52581025..52581072,-!p1@TOX3!0.80!5.28!TOX3;;chr5:138609782..138609826,+!p5@MATR3!0.79!36.72!MATR3;;chr2:185463247..185463263,+!p1@ZNF804A!0.79!9.56!ZNF804A;;chr10:48355030..48355090,+!p1@ZNF488!0.79!6.93!ZNF488;;chr6:126070769..126070801,+!p1@HEY2!0.79!6.05!HEY2;;chr3:24207018..24207024,-!p22@THRB!0.79!5.17!THRB;;chr16:4323015..4323067,-!p2@TFAP4!0.78!14.73!TFAP4;;chr2:71127699..71127744,+!p1@VAX2!0.78!10.88!VAX2;;chr9:77112225..77112238,+!p2@RORB!0.78!5.06!RORB;;chr20:62795834..62795878,+!p2@MYT1!0.78!5.06!MYT1;;chr1:93544821..93544861,+!p1@MTF2!0.77!41.89!MTF2;;chr9:14313893..14313908,-!p7@NFIB!0.77!7.37!NFIB;;chr19:23299814..23299844,+!p1@ZNF730!0.77!6.16!ZNF730;;chr12:54431694..54431704,+!p17@HOXC4!0.77!4.95!HOXC4;;chr14:29236169..29236216,+!p6@FOXG1!0.77!4.95!FOXG1;;chr5:134871742..134871748,-!p2@NEUROG1!0.77!4.84!NEUROG1;;chr4:87928413..87928433,+!p3@AFF1!0.76!32.21!AFF1;;chr9:37465399..37465454,-!p1@ZBTB5!0.76!22.32!ZBTB5;;chr1:153940354..153940395,+!p1@CREB3L4!0.76!21.11!CREB3L4;;chr4:83821835..83821896,+!p1@THAP9!0.76!16.60!THAP9;;chr3:52001426..52001447,-!p3@PCBP4!0.76!14.40!PCBP4;;chr11:8102749..8102769,+!p2@TUB!0.76!9.67!TUB;;chr15:37391588..37391604,-!p11@MEIS2!0.76!6.27!MEIS2;;chr14:57277357..57277384,-!p5@OTX2!0.76!4.73!OTX2;;chr1:40367668..40367684,-!p2@MYCL1!0.76!4.73!MYCL1;;chr8:53166899..53166914,-!p3@ST18!0.75!4.62!ST18;;chr2:182543249..182543261,-!p5@NEUROD1!0.75!4.62!NEUROD1;;chr19:24269981..24270007,+!p2@ZNF254!0.74!31.99!ZNF254;;chr1:93544791..93544807,+!p2@MTF2!0.74!7.26!MTF2;;chr21:34144024..34144111,-!p1@GCFC1!0.73!100.93!GCFC1;;chr19:45971246..45971265,+!p1@FOSB!0.73!90.37!FOSB;;chr12:50479109..50479146,+!p2@SMARCD1!0.73!82.68!SMARCD1;;chr19:21264991..21265026,+!p1@ZNF714!0.73!31.77!ZNF714;;chr1:47779762..47779827,-!p1@STIL,p1@TAL1!0.73!21.88!TAL1;;chr21:47063625..47063658,+!p1@PCBP3!0.73!21.11!PCBP3;;chr9:128509635..128509658,+!p2@PBX3!0.73!9.02!PBX3;;chr15:37392703..37392717,-!p8@MEIS2!0.73!6.49!MEIS2;;chr11:66188503..66188511,+!p1@NPAS4!0.73!4.40!NPAS4;;chr3:57234000..57234014,-!p1@HESX1!0.73!4.40!HESX1;;chr1:212782094..21278210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| ||
|ffid_belonging_in_development=UBERON:0001041,UBERON:0008947,UBERON:0002532,UBERON:0006595,UBERON:0010316 | |||
|fonse_cell_line=FF:0100353,FF:0101120 | |fonse_cell_line=FF:0100353,FF:0101120 | ||
|fonse_cell_line_closure=FF:0100353,FF:0101120 | |fonse_cell_line_closure=FF:0100353,FF:0101120 | ||
| Line 35: | Line 43: | ||
|fonse_treatment_closure= | |fonse_treatment_closure= | ||
|has_quality= | |has_quality= | ||
|hg19bam=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.cell_line.hCAGE/small%2520cell%2520lung%2520carcinoma%2520cell%2520line%253aNCI-H82.CNhs12809.10842-111E5.hg19.nobarcode.bam | |||
|hg19ctss=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.cell_line.hCAGE/small%2520cell%2520lung%2520carcinoma%2520cell%2520line%253aNCI-H82.CNhs12809.10842-111E5.hg19.ctss.bed.gz | |||
|hg19fasta=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.cell_line.hCAGE/small%2520cell%2520lung%2520carcinoma%2520cell%2520line%253aNCI-H82.CNhs12809.10842-111E5.hg19.nobarcode.rdna.fa.gz | |||
|hg38bam=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.cell_line.hCAGE/small%2520cell%2520lung%2520carcinoma%2520cell%2520line%253aNCI-H82.CNhs12809.10842-111E5.hg38.nobarcode.bam | |||
|hg38ctss=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.cell_line.hCAGE/small%2520cell%2520lung%2520carcinoma%2520cell%2520line%253aNCI-H82.CNhs12809.10842-111E5.hg38.nobarcode.ctss.bed.gz | |||
|id=FF:10842-111E5 | |id=FF:10842-111E5 | ||
|is_a=EFO:0002091;;FF: | |is_a=EFO:0002091;;FF:0000210;;FF:0100189;;FF:0103026 | ||
|is_obsolete= | |||
|library_id=CNhs12809 | |||
|library_id_phase_based=2:CNhs12809 | |||
|microRNAs= | |||
|microRNAs_nn= | |||
|microRNAs_nonnovel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer/#/human#cage;sample;10842 | |||
|microRNAs_novel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer_novel/#/human#cage;sample;10842 | |||
|name=small cell lung carcinoma cell line:NCI-H82 | |name=small cell lung carcinoma cell line:NCI-H82 | ||
|namespace=FANTOM5 | |namespace=FANTOM5 | ||
| Line 42: | Line 62: | ||
|profile_cagescan=,,, | |profile_cagescan=,,, | ||
|profile_hcage=CNhs12809,LSID972,release012,COMPLETED | |profile_hcage=CNhs12809,LSID972,release012,COMPLETED | ||
|profile_rnaseq= | |profile_rnaseq= | ||
|profile_srnaseq=,,, | |profile_srnaseq=,,, | ||
|refex=http://refex.dbcls.jp/genelist.php?lang | |||
|repeat_enrich_byfamily=0,0,0,0.0452997049655463,0,0,0,-0.160318030086386,0.0863174790208902,-0.232062427227968,0.395372067111477,0,0,0,0,0,0,0,0,0,0,0,0.0452997049655463,0,-0.108023305382881,0,0,0,0,0,0.149913192682522,0,0,0.232397754297598,0,0,0,0,0,0,0,0,0,0,0.0452997049655463,0,-0.208021126317435,0.110068651901498,0,0,0,0,0,0,0,0.037681662172468,0,0,0,0,0,0,0,0.177055545386025,0,0,0.307347678072184,0,0,0,0,0,0,0,0,0.0452997049655463,0,0,0,0,0,0,0,0,0,0.0618966832853025,0,0.0721497373513406,0,0,0,-0.066881805050447,0.28692950595475,0.0452997049655463,0.00135801281342907,0.246213645248007,0.200344194604355,0,0,0,0,0.0922130058745086,0.317972413460147,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.140656504216026,0.27404790662863,0,0,-0.124307696593413,-0.247402585252914,0,0,0.0863174790208902,0,0,0.0452997049655463 | |||
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| |||
|rna_box=111 | |rna_box=111 | ||
|rna_catalog_number= | |rna_catalog_number= | ||
| Line 54: | Line 77: | ||
|rna_rin= | |rna_rin= | ||
|rna_sample_type=total RNA | |rna_sample_type=total RNA | ||
|rna_tube_id= | |rna_tube_id=1.11E+07 | ||
|rna_weight_ug=89.6236 | |rna_weight_ug=89.6236 | ||
|rnaseq_library_id=RDhi10091 | |||
|sample_age=40 | |sample_age=40 | ||
|sample_category=cell lines | |||
|sample_cell_catalog=HTB175 | |sample_cell_catalog=HTB175 | ||
|sample_cell_line=NCI-H82 | |sample_cell_line=NCI-H82 | ||
| Line 69: | Line 94: | ||
|sample_ethnicity=C | |sample_ethnicity=C | ||
|sample_experimental_condition= | |sample_experimental_condition= | ||
|sample_gostat=GO:0044464;cell part;0!GO:0005622;intracellular;0!GO:0044424;intracellular part;6.49162526833125e-294!GO:0043226;organelle;8.94585717768783e-259!GO:0043229;intracellular organelle;4.52645908075351e-258!GO:0043231;intracellular membrane-bound organelle;3.04349077244471e-255!GO:0043227;membrane-bound organelle;4.84328677588557e-255!GO:0044422;organelle part;2.05057779852364e-158!GO:0044446;intracellular organelle part;4.76805659873245e-157!GO:0005737;cytoplasm;1.51275559423332e-156!GO:0005634;nucleus;5.11284562600655e-142!GO:0032991;macromolecular complex;1.85014301354057e-112!GO:0044237;cellular metabolic process;5.6691749990368e-108!GO:0044238;primary metabolic process;2.54362819669096e-106!GO:0044444;cytoplasmic part;6.11571202047475e-104!GO:0043170;macromolecule metabolic process;4.08880093096621e-100!GO:0030529;ribonucleoprotein complex;5.09727405064678e-99!GO:0044428;nuclear part;1.69650709135157e-93!GO:0003723;RNA binding;1.05583650453545e-89!GO:0043233;organelle lumen;9.98881667617365e-85!GO:0031974;membrane-enclosed lumen;9.98881667617365e-85!GO:0006139;nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;4.56872450439368e-81!GO:0043283;biopolymer metabolic process;2.3280003233719e-78!GO:0010467;gene expression;6.83356820941377e-76!GO:0006396;RNA processing;1.04779970812042e-63!GO:0005739;mitochondrion;4.14892430654777e-61!GO:0003676;nucleic acid binding;1.21186439495466e-59!GO:0005515;protein binding;7.5648329200669e-57!GO:0043234;protein complex;5.24998289306032e-55!GO:0031981;nuclear lumen;1.99660246691335e-54!GO:0016043;cellular component organization and biogenesis;4.51406701960763e-54!GO:0005840;ribosome;1.43462593376981e-53!GO:0016071;mRNA metabolic process;7.16880577326816e-51!GO:0006412;translation;3.00233899437189e-46!GO:0016070;RNA metabolic process;4.90258369791757e-46!GO:0008380;RNA splicing;5.98483977575604e-46!GO:0006259;DNA metabolic process;5.6098709171323e-45!GO:0003735;structural constituent of ribosome;7.4081036619587e-45!GO:0006397;mRNA processing;9.65851462999776e-44!GO:0006996;organelle organization and biogenesis;1.46600486236746e-43!GO:0044429;mitochondrial part;2.6520146195577e-43!GO:0043228;non-membrane-bound organelle;5.99075769365448e-43!GO:0043232;intracellular non-membrane-bound organelle;5.99075769365448e-43!GO:0031967;organelle envelope;1.33242262243226e-41!GO:0031975;envelope;1.57567247369853e-41!GO:0033036;macromolecule localization;5.19596607586458e-41!GO:0015031;protein transport;5.88432390148561e-41!GO:0033279;ribosomal subunit;9.22091545418291e-40!GO:0031090;organelle membrane;1.33389396917866e-39!GO:0022613;ribonucleoprotein complex biogenesis and assembly;1.9928549521313e-38!GO:0045184;establishment of protein localization;5.90702993505429e-36!GO:0008104;protein localization;1.04803377757024e-35!GO:0007049;cell cycle;1.42465790990234e-35!GO:0046907;intracellular transport;3.19000078218842e-35!GO:0044249;cellular biosynthetic process;4.946159935721e-35!GO:0009058;biosynthetic process;1.57474161018667e-33!GO:0005681;spliceosome;2.20165360380198e-33!GO:0005654;nucleoplasm;1.08906143591991e-32!GO:0000166;nucleotide binding;2.29551311145192e-32!GO:0019538;protein metabolic process;1.44491418996109e-31!GO:0009059;macromolecule biosynthetic process;4.8563554129966e-31!GO:0065003;macromolecular complex assembly;5.46518960492014e-31!GO:0005830;cytosolic ribosome (sensu Eukaryota);1.1941961073246e-29!GO:0044267;cellular protein metabolic process;3.2881591757091e-29!GO:0044260;cellular macromolecule metabolic process;5.95486308306229e-29!GO:0005829;cytosol;1.42877210198415e-28!GO:0022607;cellular component assembly;5.30017138164927e-28!GO:0006886;intracellular protein transport;1.64699447876522e-27!GO:0051649;establishment of cellular localization;1.88252103939871e-27!GO:0022402;cell cycle process;2.34860926395489e-27!GO:0005694;chromosome;2.4524767517779e-27!GO:0044451;nucleoplasm part;2.52420340626408e-27!GO:0006974;response to DNA damage stimulus;4.02702496685129e-27!GO:0005740;mitochondrial envelope;4.41406000941753e-27!GO:0051641;cellular localization;1.3042238177315e-26!GO:0044445;cytosolic part;7.32354799944933e-26!GO:0019866;organelle inner membrane;1.807983343953e-25!GO:0031966;mitochondrial membrane;2.61186388872727e-25!GO:0000278;mitotic cell cycle;5.28848765249647e-25!GO:0006281;DNA repair;7.95824805266491e-25!GO:0000087;M phase of mitotic cell cycle;2.44830668309102e-23!GO:0044427;chromosomal part;2.44830668309102e-23!GO:0051276;chromosome organization and biogenesis;4.83091449933502e-23!GO:0005743;mitochondrial inner membrane;4.92414273052713e-23!GO:0016462;pyrophosphatase activity;5.78827011462506e-23!GO:0016818;hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides;7.05668663925528e-23!GO:0016817;hydrolase activity, acting on acid anhydrides;9.88220067590581e-23!GO:0007067;mitosis;1.00938209459572e-22!GO:0017111;nucleoside-triphosphatase activity;2.56423635350059e-22!GO:0032553;ribonucleotide binding;2.57484949274112e-22!GO:0032555;purine ribonucleotide binding;2.57484949274112e-22!GO:0005730;nucleolus;1.10397048804676e-21!GO:0016874;ligase activity;1.86176169608872e-21!GO:0022403;cell cycle phase;2.59256869964037e-21!GO:0015934;large ribosomal subunit;5.82557930540513e-21!GO:0022618;protein-RNA complex assembly;8.90187561528997e-21!GO:0044455;mitochondrial membrane part;1.16424305923496e-20!GO:0017076;purine nucleotide binding;2.14394041145071e-20!GO:0006457;protein folding;2.17816292466068e-20!GO:0006119;oxidative phosphorylation;2.91390932901619e-20!GO:0000279;M phase;3.14601324793873e-20!GO:0051301;cell division;6.04428386232007e-20!GO:0006512;ubiquitin cycle;6.14338087580169e-20!GO:0015935;small ribosomal subunit;6.64460660810417e-20!GO:0031980;mitochondrial lumen;2.04953772672613e-19!GO:0005759;mitochondrial matrix;2.04953772672613e-19!GO:0006260;DNA replication;3.94004734811849e-19!GO:0005524;ATP binding;4.51032397199641e-19!GO:0032559;adenyl ribonucleotide binding;5.78814363849326e-19!GO:0008135;translation factor activity, nucleic acid binding;1.15799026264029e-18!GO:0042254;ribosome biogenesis and assembly;1.90552690577399e-18!GO:0006325;establishment and/or maintenance of chromatin architecture;2.9676666548758e-17!GO:0008134;transcription factor binding;3.57561832067489e-17!GO:0030554;adenyl nucleotide binding;7.45463443816261e-17!GO:0000398;nuclear mRNA splicing, via spliceosome;1.37644844737871e-16!GO:0000375;RNA splicing, via transesterification reactions;1.37644844737871e-16!GO:0000377;RNA splicing, via transesterification reactions with bulged adenosine as nucleophile;1.37644844737871e-16!GO:0006323;DNA packaging;1.44905986722761e-16!GO:0044265;cellular macromolecule catabolic process;1.72144694010745e-16!GO:0009719;response to endogenous stimulus;2.40273425385408e-16!GO:0031965;nuclear membrane;2.40273425385408e-16!GO:0012505;endomembrane system;3.32929410703974e-16!GO:0015630;microtubule cytoskeleton;4.18408614394697e-16!GO:0005842;cytosolic large ribosomal subunit (sensu Eukaryota);9.268176356635e-16!GO:0005746;mitochondrial respiratory chain;2.09928435958671e-15!GO:0005635;nuclear envelope;2.13285348433633e-15!GO:0044453;nuclear membrane part;2.79162214399361e-15!GO:0016604;nuclear body;1.00959279554045e-14!GO:0050136;NADH dehydrogenase (quinone) activity;1.96296019861409e-14!GO:0003954;NADH dehydrogenase activity;1.96296019861409e-14!GO:0008137;NADH dehydrogenase (ubiquinone) activity;1.96296019861409e-14!GO:0006511;ubiquitin-dependent protein catabolic process;2.14505901638746e-14!GO:0005843;cytosolic small ribosomal subunit (sensu Eukaryota);2.35159884155463e-14!GO:0005761;mitochondrial ribosome;3.26681556052782e-14!GO:0000313;organellar ribosome;3.26681556052782e-14!GO:0016887;ATPase activity;3.37260080937281e-14!GO:0042623;ATPase activity, coupled;3.98316417345564e-14!GO:0051603;proteolysis involved in cellular protein catabolic process;5.2673402234748e-14!GO:0051082;unfolded protein binding;5.2673402234748e-14!GO:0019941;modification-dependent protein catabolic process;5.91040747937144e-14!GO:0043632;modification-dependent macromolecule catabolic process;5.91040747937144e-14!GO:0016655;oxidoreductase activity, acting on NADH or NADPH, quinone or similar compound as acceptor;7.01402593949135e-14!GO:0019222;regulation of metabolic process;1.11201772701561e-13!GO:0006605;protein targeting;1.25393104662325e-13!GO:0044257;cellular protein catabolic process;1.25393104662325e-13!GO:0043285;biopolymer catabolic process;1.28104563293434e-13!GO:0006350;transcription;1.40850813678371e-13!GO:0003743;translation initiation factor activity;1.90297252834807e-13!GO:0006403;RNA localization;2.37364660310871e-13!GO:0005643;nuclear pore;2.52824674767055e-13!GO:0009057;macromolecule catabolic process;3.21232614611873e-13!GO:0050657;nucleic acid transport;6.20569979092049e-13!GO:0051236;establishment of RNA localization;6.20569979092049e-13!GO:0050658;RNA transport;6.20569979092049e-13!GO:0048770;pigment granule;7.35750572659717e-13!GO:0042470;melanosome;7.35750572659717e-13!GO:0006364;rRNA processing;8.02733114384899e-13!GO:0008565;protein transporter activity;1.06350572587862e-12!GO:0006413;translational initiation;1.31080025875384e-12!GO:0042775;organelle ATP synthesis coupled electron transport;1.31080025875384e-12!GO:0042773;ATP synthesis coupled electron transport;1.31080025875384e-12!GO:0043412;biopolymer modification;1.33020983160277e-12!GO:0016072;rRNA metabolic process;1.33339707572751e-12!GO:0004386;helicase activity;1.86563140169769e-12!GO:0030964;NADH dehydrogenase complex (quinone);2.1585309195011e-12!GO:0045271;respiratory chain complex I;2.1585309195011e-12!GO:0005747;mitochondrial respiratory chain complex I;2.1585309195011e-12!GO:0044248;cellular catabolic process;2.3060974438928e-12!GO:0016607;nuclear speck;2.59756592900761e-12!GO:0006446;regulation of translational initiation;3.13705242069489e-12!GO:0006120;mitochondrial electron transport, NADH to ubiquinone;6.94568277568462e-12!GO:0051726;regulation of cell cycle;8.54705077548044e-12!GO:0003712;transcription cofactor activity;8.63092148339518e-12!GO:0031323;regulation of cellular metabolic process;1.01122739984168e-11!GO:0000074;regulation of progression through cell cycle;1.07139898452224e-11!GO:0065004;protein-DNA complex assembly;1.27527682022741e-11!GO:0048193;Golgi vesicle transport;1.28379342433877e-11!GO:0006399;tRNA metabolic process;1.4629145074499e-11!GO:0015931;nucleobase, nucleoside, nucleotide and nucleic acid transport;1.67340740866611e-11!GO:0008026;ATP-dependent helicase activity;2.1372112541748e-11!GO:0050794;regulation of cellular process;2.21745246602701e-11!GO:0032774;RNA biosynthetic process;3.19497592642866e-11!GO:0016568;chromatin modification;3.45901456849691e-11!GO:0065002;intracellular protein transport across a membrane;4.13617944835085e-11!GO:0016192;vesicle-mediated transport;4.34626334798503e-11!GO:0000785;chromatin;4.57311969603321e-11!GO:0006351;transcription, DNA-dependent;4.59045786659636e-11!GO:0051186;cofactor metabolic process;5.28053585221558e-11!GO:0019219;regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;5.91449794338713e-11!GO:0006333;chromatin assembly or disassembly;6.49024691698372e-11!GO:0051028;mRNA transport;6.58325945066472e-11!GO:0010468;regulation of gene expression;6.88983750175005e-11!GO:0005794;Golgi apparatus;7.00998537520058e-11!GO:0009259;ribonucleotide metabolic process;7.39872710594364e-11!GO:0044432;endoplasmic reticulum part;7.92875268568975e-11!GO:0005783;endoplasmic reticulum;8.42258651481292e-11!GO:0006163;purine nucleotide metabolic process;1.05339822265904e-10!GO:0030163;protein catabolic process;1.82087555705886e-10!GO:0006913;nucleocytoplasmic transport;1.83442822169098e-10!GO:0000502;proteasome complex (sensu Eukaryota);1.84637451980261e-10!GO:0006464;protein modification process;1.90221327270085e-10!GO:0000775;chromosome, pericentric region;2.11180196035013e-10!GO:0043687;post-translational protein modification;2.28541906868432e-10!GO:0006164;purine nucleotide biosynthetic process;3.41911091583545e-10!GO:0016876;ligase activity, forming aminoacyl-tRNA and related compounds;4.00405554278055e-10!GO:0004812;aminoacyl-tRNA ligase activity;4.00405554278055e-10!GO:0016875;ligase activity, forming carbon-oxygen bonds;4.00405554278055e-10!GO:0051169;nuclear transport;5.39894702549898e-10!GO:0046930;pore complex;5.47409237306574e-10!GO:0030532;small nuclear ribonucleoprotein complex;5.84924226259105e-10!GO:0009260;ribonucleotide biosynthetic process;6.87618100896369e-10!GO:0043038;amino acid activation;8.17044022816877e-10!GO:0006418;tRNA aminoacylation for protein translation;8.17044022816877e-10!GO:0043039;tRNA aminoacylation;8.17044022816877e-10!GO:0006261;DNA-dependent DNA replication;8.28983790517095e-10!GO:0043566;structure-specific DNA binding;1.02649412156528e-09!GO:0003697;single-stranded DNA binding;1.07602941064666e-09!GO:0003677;DNA binding;1.17902058204333e-09!GO:0009150;purine ribonucleotide metabolic process;1.3136274145778e-09!GO:0005819;spindle;1.43890862982869e-09!GO:0016651;oxidoreductase activity, acting on NADH or NADPH;2.0024065490814e-09!GO:0045449;regulation of transcription;2.16557836305191e-09!GO:0006732;coenzyme metabolic process;3.18988888248809e-09!GO:0016591;DNA-directed RNA polymerase II, holoenzyme;4.0015094552064e-09!GO:0009152;purine ribonucleotide biosynthetic process;4.39610068501164e-09!GO:0016879;ligase activity, forming carbon-nitrogen bonds;4.92481600570203e-09!GO:0005874;microtubule;5.52293669561315e-09!GO:0006366;transcription from RNA polymerase II promoter;5.6072548111973e-09!GO:0007017;microtubule-based process;1.06684101066427e-08!GO:0016779;nucleotidyltransferase activity;1.12130014092463e-08!GO:0006355;regulation of transcription, DNA-dependent;1.50274010154403e-08!GO:0000245;spliceosome assembly;2.98081903458537e-08!GO:0008639;small protein conjugating enzyme activity;2.98661404700869e-08!GO:0005813;centrosome;3.02115836664572e-08!GO:0046961;hydrogen ion transporting ATPase activity, rotational mechanism;3.93196824721806e-08!GO:0016740;transferase activity;4.43175460200497e-08!GO:0004842;ubiquitin-protein ligase activity;4.71145797317451e-08!GO:0055086;nucleobase, nucleoside and nucleotide metabolic process;6.74132033550342e-08!GO:0046933;hydrogen ion transporting ATP synthase activity, rotational mechanism;6.93624827643182e-08!GO:0009199;ribonucleoside triphosphate metabolic process;8.59897903848259e-08!GO:0019787;small conjugating protein ligase activity;1.02122553284388e-07!GO:0005815;microtubule organizing center;1.09534711295593e-07!GO:0007051;spindle organization and biogenesis;1.11073380980537e-07!GO:0008094;DNA-dependent ATPase activity;1.16149558577713e-07!GO:0009141;nucleoside triphosphate metabolic process;1.16925501397487e-07!GO:0009142;nucleoside triphosphate biosynthetic process;1.2618693286279e-07!GO:0009201;ribonucleoside triphosphate biosynthetic process;1.2618693286279e-07!GO:0009060;aerobic respiration;1.39875927590429e-07!GO:0050789;regulation of biological process;1.60349311665605e-07!GO:0019829;cation-transporting ATPase activity;1.67059082641598e-07!GO:0045333;cellular respiration;1.89089010691431e-07!GO:0009205;purine ribonucleoside triphosphate metabolic process;1.89255417786052e-07!GO:0009144;purine nucleoside triphosphate metabolic process;1.89255417786052e-07!GO:0005657;replication fork;1.99836555365071e-07!GO:0031202;RNA splicing factor activity, transesterification mechanism;2.01544958036817e-07!GO:0042175;nuclear envelope-endoplasmic reticulum network;2.0845182437747e-07!GO:0017038;protein import;2.22620296699238e-07!GO:0009206;purine ribonucleoside triphosphate biosynthetic process;2.89170449903876e-07!GO:0009145;purine nucleoside triphosphate biosynthetic process;2.89170449903876e-07!GO:0005667;transcription factor complex;3.19743503511712e-07!GO:0000075;cell cycle checkpoint;3.37759370837455e-07!GO:0016853;isomerase activity;3.73299868251363e-07!GO:0015986;ATP synthesis coupled proton transport;4.47838013338106e-07!GO:0015985;energy coupled proton transport, down electrochemical gradient;4.47838013338106e-07!GO:0006334;nucleosome assembly;4.51077691184173e-07!GO:0016881;acid-amino acid ligase activity;4.66948182970846e-07!GO:0005789;endoplasmic reticulum membrane;4.69603339605079e-07!GO:0003924;GTPase activity;5.80671072191615e-07!GO:0031497;chromatin assembly;6.67909589945811e-07!GO:0003724;RNA helicase activity;9.29841195021297e-07!GO:0032446;protein modification by small protein conjugation;9.40444366572818e-07!GO:0009117;nucleotide metabolic process;1.24059062779434e-06!GO:0048475;coated membrane;1.37941220725051e-06!GO:0030117;membrane coat;1.37941220725051e-06!GO:0009055;electron carrier activity;1.39519822404123e-06!GO:0016772;transferase activity, transferring phosphorus-containing groups;1.42733556057916e-06!GO:0003899;DNA-directed RNA polymerase activity;1.45168305272612e-06!GO:0009056;catabolic process;1.57894526550971e-06!GO:0005793;ER-Golgi intermediate compartment;1.80477262618618e-06!GO:0003714;transcription corepressor activity;1.82369157419968e-06!GO:0016363;nuclear matrix;1.9034753108173e-06!GO:0006888;ER to Golgi vesicle-mediated transport;1.91628773936999e-06!GO:0051188;cofactor biosynthetic process;2.12257277519148e-06!GO:0045259;proton-transporting ATP synthase complex;2.39860211887799e-06!GO:0031982;vesicle;2.94848381536978e-06!GO:0006461;protein complex assembly;3.02893424719342e-06!GO:0016567;protein ubiquitination;3.1349853213108e-06!GO:0000226;microtubule cytoskeleton organization and biogenesis;3.54537707365378e-06!GO:0031988;membrane-bound vesicle;3.6701100118875e-06!GO:0006099;tricarboxylic acid cycle;3.86985108300062e-06!GO:0046356;acetyl-CoA catabolic process;3.86985108300062e-06!GO:0046034;ATP metabolic process;3.94254027217111e-06!GO:0045045;secretory pathway;4.32026013535012e-06!GO:0007005;mitochondrion organization and biogenesis;4.53001581580145e-06!GO:0016741;transferase activity, transferring one-carbon groups;4.72150935580887e-06!GO:0031410;cytoplasmic vesicle;5.04171143784161e-06!GO:0016023;cytoplasmic membrane-bound vesicle;5.30753741024439e-06!GO:0016469;proton-transporting two-sector ATPase complex;5.33781874477705e-06!GO:0006613;cotranslational protein targeting to membrane;5.4214967806538e-06!GO:0008168;methyltransferase activity;5.59761989538278e-06!GO:0006754;ATP biosynthetic process;5.59761989538278e-06!GO:0006753;nucleoside phosphate metabolic process;5.59761989538278e-06!GO:0005788;endoplasmic reticulum lumen;6.0931347452385e-06!GO:0006084;acetyl-CoA metabolic process;6.98771025157853e-06!GO:0000776;kinetochore;7.79469191339482e-06!GO:0051168;nuclear export;8.75967218428988e-06!GO:0043623;cellular protein complex assembly;9.45265900854573e-06!GO:0006793;phosphorus metabolic process;9.80430886288162e-06!GO:0006796;phosphate metabolic process;9.80430886288162e-06!GO:0016564;transcription repressor activity;1.10927675729113e-05!GO:0003682;chromatin binding;1.18612402990315e-05!GO:0006752;group transfer coenzyme metabolic process;1.24707515021822e-05!GO:0007010;cytoskeleton organization and biogenesis;1.30232923218671e-05!GO:0003690;double-stranded DNA binding;1.56689062964109e-05!GO:0015078;hydrogen ion transmembrane transporter activity;1.58132001754618e-05!GO:0009108;coenzyme biosynthetic process;1.69826395177896e-05!GO:0015631;tubulin binding;1.90017117148954e-05!GO:0003713;transcription coactivator activity;2.04204503347387e-05!GO:0007059;chromosome segregation;2.47661019270266e-05!GO:0003729;mRNA binding;2.57415363030468e-05!GO:0030120;vesicle coat;2.61691259121234e-05!GO:0030662;coated vesicle membrane;2.61691259121234e-05!GO:0043021;ribonucleoprotein binding;2.76513002727751e-05!GO:0006302;double-strand break repair;3.04383236187198e-05!GO:0008186;RNA-dependent ATPase activity;3.14571601316961e-05!GO:0051329;interphase of mitotic cell cycle;3.22603431961591e-05!GO:0004674;protein serine/threonine kinase activity;4.01975905493457e-05!GO:0008654;phospholipid biosynthetic process;5.0175974364054e-05!GO:0044431;Golgi apparatus part;5.10881598877353e-05!GO:0045454;cell redox homeostasis;5.10881598877353e-05!GO:0006414;translational elongation;5.46502218326821e-05!GO:0003755;peptidyl-prolyl cis-trans isomerase activity;5.80206980717527e-05!GO:0030530;heterogeneous nuclear ribonucleoprotein complex;6.16943126646171e-05!GO:0007088;regulation of mitosis;6.16943126646171e-05!GO:0009109;coenzyme catabolic process;6.2647523959102e-05!GO:0005525;GTP binding;6.84324070832225e-05!GO:0000151;ubiquitin ligase complex;6.8844216623194e-05!GO:0016859;cis-trans isomerase activity;7.00453674770097e-05!GO:0005762;mitochondrial large ribosomal subunit;7.44562935439735e-05!GO:0000315;organellar large ribosomal subunit;7.44562935439735e-05!GO:0006606;protein import into nucleus;7.87964984975527e-05!GO:0009165;nucleotide biosynthetic process;8.2855926413517e-05!GO:0004004;ATP-dependent RNA helicase activity;9.86508368924891e-05!GO:0015077;monovalent inorganic cation transmembrane transporter activity;0.000106028268760927!GO:0045786;negative regulation of progression through cell cycle;0.000106506541729097!GO:0000314;organellar small ribosomal subunit;0.000106506541729097!GO:0005763;mitochondrial small ribosomal subunit;0.000106506541729097!GO:0051170;nuclear import;0.000107325637151148!GO:0006402;mRNA catabolic process;0.000107752392410138!GO:0006310;DNA recombination;0.000108388168281345!GO:0007093;mitotic cell cycle checkpoint;0.000108536500626659!GO:0006352;transcription initiation;0.000112345220066621!GO:0032508;DNA duplex unwinding;0.000112997807093208!GO:0032392;DNA geometric change;0.000112997807093208!GO:0044452;nucleolar part;0.000116279223530592!GO:0016310;phosphorylation;0.00012011903679023!GO:0005876;spindle microtubule;0.000121988469300647!GO:0051187;cofactor catabolic process;0.000128539855580806!GO:0003678;DNA helicase activity;0.000131191172361569!GO:0051325;interphase;0.000133817644234389!GO:0005768;endosome;0.000135652684882318!GO:0006357;regulation of transcription from RNA polymerase II promoter;0.000141246690486859!GO:0006383;transcription from RNA polymerase III promoter;0.000167826805227422!GO:0005798;Golgi-associated vesicle;0.000176645937276277!GO:0016281;eukaryotic translation initiation factor 4F complex;0.000189445084195563!GO:0051427;hormone receptor binding;0.000198608036858557!GO:0045934;negative regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;0.000198800214112351!GO:0003684;damaged DNA binding;0.00020675475719413!GO:0006612;protein targeting to membrane;0.000219924906124646!GO:0006891;intra-Golgi vesicle-mediated transport;0.000219924906124646!GO:0000228;nuclear chromosome;0.000220459794612897!GO:0032561;guanyl ribonucleotide binding;0.000231880048214789!GO:0019001;guanyl nucleotide binding;0.000231880048214789!GO:0007052;mitotic spindle organization and biogenesis;0.000240595740604111!GO:0031324;negative regulation of cellular metabolic process;0.000241958923880719!GO:0006268;DNA unwinding during replication;0.000241958923880719!GO:0006401;RNA catabolic process;0.000321157027555809!GO:0006626;protein targeting to mitochondrion;0.000331979066601002!GO:0043681;protein import into mitochondrion;0.000351150253169577!GO:0000059;protein import into nucleus, docking;0.000351150253169577!GO:0000184;mRNA catabolic process, nonsense-mediated decay;0.000354512677151675!GO:0016251;general RNA polymerase II transcription factor activity;0.000359891909591862!GO:0035257;nuclear hormone receptor binding;0.000385345044469707!GO:0006338;chromatin remodeling;0.00039204632825337!GO:0031072;heat shock protein binding;0.000426177971493373!GO:0005684;U2-dependent spliceosome;0.000439654234123814!GO:0005753;mitochondrial proton-transporting ATP synthase complex;0.000450341754336388!GO:0032259;methylation;0.000498860632458482!GO:0016563;transcription activator activity;0.000527191666939896!GO:0005048;signal sequence binding;0.000537169043171254!GO:0003746;translation elongation factor activity;0.000552354559020705!GO:0042625;ATPase activity, coupled to transmembrane movement of ions;0.000556935010620256!GO:0044440;endosomal part;0.000570827442584131!GO:0010008;endosome membrane;0.000570827442584131!GO:0007018;microtubule-based movement;0.000602124540569814!GO:0000287;magnesium ion binding;0.000614500744122185!GO:0045261;proton-transporting ATP synthase complex, catalytic core F(1);0.000616347109802148!GO:0051052;regulation of DNA metabolic process;0.000616582188579621!GO:0065007;biological regulation;0.00062264585066675!GO:0008250;oligosaccharyl transferase complex;0.000686882139752024!GO:0000139;Golgi membrane;0.000696979521340613!GO:0033178;proton-transporting two-sector ATPase complex, catalytic domain;0.000749676235498768!GO:0004576;oligosaccharyl transferase activity;0.00080107449189274!GO:0019867;outer membrane;0.000825315844955657!GO:0032200;telomere organization and biogenesis;0.00083287598617964!GO:0000723;telomere maintenance;0.00083287598617964!GO:0008017;microtubule binding;0.000846215865533897!GO:0031968;organelle outer membrane;0.000851604383494655!GO:0006405;RNA export from nucleus;0.00085450883926875!GO:0006839;mitochondrial transport;0.000869094457603199!GO:0000049;tRNA binding;0.000876761443397474!GO:0048471;perinuclear region of cytoplasm;0.000894188968912411!GO:0015980;energy derivation by oxidation of organic compounds;0.000896389963585029!GO:0048487;beta-tubulin binding;0.000900692533284597!GO:0004527;exonuclease activity;0.000909380999149299!GO:0044450;microtubule organizing center part;0.000997022469817708!GO:0016679;oxidoreductase activity, acting on diphenols and related substances as donors;0.00103095324836179!GO:0016681;oxidoreductase activity, acting on diphenols and related substances as donors, cytochrome as acceptor;0.00103095324836179!GO:0008121;ubiquinol-cytochrome-c reductase activity;0.00103095324836179!GO:0030137;COPI-coated vesicle;0.00103437563673452!GO:0016481;negative regulation of transcription;0.0010467477808737!GO:0051539;4 iron, 4 sulfur cluster binding;0.0010518246561757!GO:0008033;tRNA processing;0.00105915122914794!GO:0046467;membrane lipid biosynthetic process;0.00107003245163538!GO:0016272;prefoldin complex;0.00111226313770459!GO:0000079;regulation of cyclin-dependent protein kinase activity;0.00113503746494499!GO:0006144;purine base metabolic process;0.0012024663165853!GO:0003711;transcription elongation regulator activity;0.00120343154258983!GO:0005852;eukaryotic translation initiation factor 3 complex;0.0012277993350632!GO:0051920;peroxiredoxin activity;0.0012277993350632!GO:0005637;nuclear inner membrane;0.00125202951115811!GO:0005875;microtubule associated complex;0.00129452502231561!GO:0004579;dolichyl-diphosphooligosaccharide-protein glycotransferase activity;0.001312706462398!GO:0008022;protein C-terminus binding;0.00142376442923777!GO:0008139;nuclear localization sequence binding;0.00144918486735857!GO:0008757;S-adenosylmethionine-dependent methyltransferase activity;0.00148857215670037!GO:0005741;mitochondrial outer membrane;0.00148857215670037!GO:0030135;coated vesicle;0.00148857215670037!GO:0007006;mitochondrial membrane organization and biogenesis;0.00154801668696179!GO:0006611;protein export from nucleus;0.00155480839819461!GO:0009892;negative regulation of metabolic process;0.00158358793541715!GO:0051087;chaperone binding;0.00165618847891396!GO:0048500;signal recognition particle;0.00165684687186775!GO:0015405;P-P-bond-hydrolysis-driven transmembrane transporter activity;0.00179681183720946!GO:0015399;primary active transmembrane transporter activity;0.00179681183720946!GO:0030867;rough endoplasmic reticulum membrane;0.00186710385890686!GO:0031970;organelle envelope lumen;0.00192398120578213!GO:0030880;RNA polymerase complex;0.00195243024720758!GO:0006270;DNA replication initiation;0.00201821803283829!GO:0005669;transcription factor TFIID complex;0.00207284632658962!GO:0016862;intramolecular oxidoreductase activity, interconverting keto- and enol-groups;0.00209423578565764!GO:0043596;nuclear replication fork;0.0022333932661308!GO:0030663;COPI coated vesicle membrane;0.00231552080801188!GO:0030126;COPI vesicle coat;0.00231552080801188!GO:0000786;nucleosome;0.00240028126136558!GO:0005839;proteasome core complex (sensu Eukaryota);0.0024031539989146!GO:0000922;spindle pole;0.00244743617610984!GO:0032940;secretion by cell;0.00245299904468423!GO:0008312;7S RNA binding;0.00246384925311927!GO:0008276;protein methyltransferase activity;0.00268243474357185!GO:0019899;enzyme binding;0.00272701751827681!GO:0000910;cytokinesis;0.00274274515171592!GO:0046474;glycerophospholipid biosynthetic process;0.00287399321151175!GO:0005758;mitochondrial intermembrane space;0.00299189355151318!GO:0016790;thiolester hydrolase activity;0.00319636419372725!GO:0009112;nucleobase metabolic process;0.00324722242510039!GO:0033116;ER-Golgi intermediate compartment membrane;0.00342672450778658!GO:0006607;NLS-bearing substrate import into nucleus;0.00347052639501418!GO:0009116;nucleoside metabolic process;0.00356869361092567!GO:0031124;mRNA 3'-end processing;0.00365249027118351!GO:0006284;base-excision repair;0.0036575220609232!GO:0000725;recombinational repair;0.00367661942935027!GO:0000724;double-strand break repair via homologous recombination;0.00367661942935027!GO:0055029;nuclear DNA-directed RNA polymerase complex;0.00374978703423472!GO:0000428;DNA-directed RNA polymerase complex;0.00374978703423472!GO:0030176;integral to endoplasmic reticulum membrane;0.00375423971486786!GO:0044454;nuclear chromosome part;0.00375778865552861!GO:0019783;small conjugating protein-specific protease activity;0.00382676173768545!GO:0006614;SRP-dependent cotranslational protein targeting to membrane;0.0039284478242654!GO:0045047;protein targeting to ER;0.0039284478242654!GO:0008270;zinc ion binding;0.00403481503435975!GO:0045263;proton-transporting ATP synthase complex, coupling factor F(o);0.00403481503435975!GO:0033177;proton-transporting two-sector ATPase complex, proton-transporting domain;0.00403481503435975!GO:0016126;sterol biosynthetic process;0.00406880826769311!GO:0007004;telomere maintenance via telomerase;0.00417065816357051!GO:0043414;biopolymer methylation;0.00419268294263139!GO:0030134;ER to Golgi transport vesicle;0.00432416708200564!GO:0000178;exosome (RNase complex);0.00435822721962525!GO:0000792;heterochromatin;0.00435833816894473!GO:0018196;peptidyl-asparagine modification;0.00436091723961644!GO:0018279;protein amino acid N-linked glycosylation via asparagine;0.00436091723961644!GO:0042393;histone binding;0.00460987660607513!GO:0006595;polyamine metabolic process;0.00461075818063973!GO:0000339;RNA cap binding;0.00477898950134356!GO:0019205;nucleobase, nucleoside, nucleotide kinase activity;0.004800501621452!GO:0031570;DNA integrity checkpoint;0.00489875555324247!GO:0006007;glucose catabolic process;0.0050054250732199!GO:0000781;chromosome, telomeric region;0.00504512708751462!GO:0004843;ubiquitin-specific protease activity;0.00512557024980351!GO:0004221;ubiquitin thiolesterase activity;0.00541078350006725!GO:0005786;signal recognition particle, endoplasmic reticulum targeting;0.00542700248241792!GO:0000793;condensed chromosome;0.0055184973219638!GO:0016765;transferase activity, transferring alkyl or aryl (other than methyl) groups;0.00552801365406216!GO:0030127;COPII vesicle coat;0.00554673776630408!GO:0012507;ER to Golgi transport vesicle membrane;0.00554673776630408!GO:0046489;phosphoinositide biosynthetic process;0.00562514156458315!GO:0003702;RNA polymerase II transcription factor activity;0.00565473059952535!GO:0009124;nucleoside monophosphate biosynthetic process;0.00584884556772316!GO:0009123;nucleoside monophosphate metabolic process;0.00584884556772316!GO:0045947;negative regulation of translational initiation;0.00587950573741976!GO:0005770;late endosome;0.00587950573741976!GO:0043601;nuclear replisome;0.00599862739721533!GO:0030894;replisome;0.00599862739721533!GO:0043284;biopolymer biosynthetic process;0.00640363048003742!GO:0006220;pyrimidine nucleotide metabolic process;0.00671678097290251!GO:0006541;glutamine metabolic process;0.00675064137055416!GO:0051540;metal cluster binding;0.00697560192196911!GO:0051536;iron-sulfur cluster binding;0.00697560192196911!GO:0004003;ATP-dependent DNA helicase activity;0.00700211927657601!GO:0006378;mRNA polyadenylation;0.00705651772286565!GO:0048523;negative regulation of cellular process;0.00716694781985687!GO:0005663;DNA replication factor C complex;0.00722374348353296!GO:0006695;cholesterol biosynthetic process;0.00728441179025586!GO:0004298;threonine endopeptidase activity;0.00729758564086122!GO:0030496;midbody;0.00739592228083703!GO:0003756;protein disulfide isomerase activity;0.00794296587775448!GO:0016864;intramolecular oxidoreductase activity, transposing S-S bonds;0.00794296587775448!GO:0005838;proteasome regulatory particle (sensu Eukaryota);0.00820948557585881!GO:0005853;eukaryotic translation elongation factor 1 complex;0.00848600147478173!GO:0043022;ribosome binding;0.0085260607306656!GO:0005832;chaperonin-containing T-complex;0.0085260607306656!GO:0035258;steroid hormone receptor binding;0.00875028516226535!GO:0031123;RNA 3'-end processing;0.00887208281966255!GO:0005769;early endosome;0.00910823550734415!GO:0006376;mRNA splice site selection;0.00946112593967525!GO:0000389;nuclear mRNA 3'-splice site recognition;0.00946112593967525!GO:0007264;small GTPase mediated signal transduction;0.00980905461623734!GO:0016584;nucleosome positioning;0.00998856664518003!GO:0000726;non-recombinational repair;0.0100269764342257!GO:0016787;hydrolase activity;0.010721173155898!GO:0008097;5S rRNA binding;0.0109476615311338!GO:0000819;sister chromatid segregation;0.0111421881318824!GO:0003887;DNA-directed DNA polymerase activity;0.0111421881318824!GO:0006730;one-carbon compound metabolic process;0.0112978038310513!GO:0009451;RNA modification;0.0114648394388737!GO:0000096;sulfur amino acid metabolic process;0.0115429391060357!GO:0009161;ribonucleoside monophosphate metabolic process;0.0115429391060357!GO:0009156;ribonucleoside monophosphate biosynthetic process;0.0115429391060357!GO:0004532;exoribonuclease activity;0.0115429391060357!GO:0016896;exoribonuclease activity, producing 5'-phosphomonoesters;0.0115429391060357!GO:0051246;regulation of protein metabolic process;0.0115429391060357!GO:0030118;clathrin coat;0.0115429391060357!GO:0031577;spindle checkpoint;0.011913573183995!GO:0006367;transcription initiation from RNA polymerase II promoter;0.0122089841203682!GO:0022884;macromolecule transmembrane transporter activity;0.0122784829641818!GO:0015450;P-P-bond-hydrolysis-driven protein transmembrane transporter activity;0.0122784829641818!GO:0006278;RNA-dependent DNA replication;0.0124958861020069!GO:0007021;tubulin folding;0.012522787423521!GO:0008610;lipid biosynthetic process;0.0126090740740146!GO:0008180;signalosome;0.0129334316014073!GO:0009303;rRNA transcription;0.0131746511630156!GO:0051297;centrosome organization and biogenesis;0.0133457021854703!GO:0031023;microtubule organizing center organization and biogenesis;0.0133457021854703!GO:0022890;inorganic cation transmembrane transporter activity;0.0133764964736335!GO:0016676;oxidoreductase activity, acting on heme group of donors, oxygen as acceptor;0.0135979477600634!GO:0015002;heme-copper terminal oxidase activity;0.0135979477600634!GO:0016675;oxidoreductase activity, acting on heme group of donors;0.0135979477600634!GO:0004129;cytochrome-c oxidase activity;0.0135979477600634!GO:0000070;mitotic sister chromatid segregation;0.0137275264598738!GO:0006096;glycolysis;0.0140795246181252!GO:0030145;manganese ion binding;0.0147297260473327!GO:0016407;acetyltransferase activity;0.0148432788192315!GO:0006289;nucleotide-excision repair;0.0155421900911912!GO:0051059;NF-kappaB binding;0.0157264999271096!GO:0008320;protein transmembrane transporter activity;0.0157264999271096!GO:0030521;androgen receptor signaling pathway;0.0157264999271096!GO:0030658;transport vesicle membrane;0.0157264999271096!GO:0030705;cytoskeleton-dependent intracellular transport;0.0158359306071993!GO:0008287;protein serine/threonine phosphatase complex;0.0160790226784389!GO:0016891;endoribonuclease activity, producing 5'-phosphomonoesters;0.0163997302382822!GO:0006275;regulation of DNA replication;0.0164214456026454!GO:0006497;protein amino acid lipidation;0.016742869989754!GO:0008092;cytoskeletal protein binding;0.0173667389793085!GO:0035267;NuA4 histone acetyltransferase complex;0.0180578169872381!GO:0046128;purine ribonucleoside metabolic process;0.0180596782624771!GO:0042278;purine nucleoside metabolic process;0.0180596782624771!GO:0005850;eukaryotic translation initiation factor 2 complex;0.0185554440474858!GO:0007050;cell cycle arrest;0.0185665361481952!GO:0046112;nucleobase biosynthetic process;0.0186362141554283!GO:0000077;DNA damage checkpoint;0.0197336870149245!GO:0006400;tRNA modification;0.02023010765718!GO:0046483;heterocycle metabolic process;0.0203601197759694!GO:0043492;ATPase activity, coupled to movement of substances;0.0211715285663339!GO:0016311;dephosphorylation;0.0212686603031143!GO:0004518;nuclease activity;0.0217068099998626!GO:0004722;protein serine/threonine phosphatase activity;0.0218255610016059!GO:0042158;lipoprotein biosynthetic process;0.0224624889693856!GO:0043631;RNA polyadenylation;0.0225265367321539!GO:0005869;dynactin complex;0.0226610284730442!GO:0040029;regulation of gene expression, epigenetic;0.022860854371227!GO:0016301;kinase activity;0.0230329941848894!GO:0016893;endonuclease activity, active with either ribo- or deoxyribonucleic acids and producing 5'-phosphomonoesters;0.0231724890648651!GO:0051789;response to protein stimulus;0.02330122827554!GO:0006986;response to unfolded protein;0.02330122827554!GO:0008170;N-methyltransferase activity;0.0245847346935066!GO:0031369;translation initiation factor binding;0.0245950173569784!GO:0030133;transport vesicle;0.0245950173569784!GO:0009113;purine base biosynthetic process;0.0250435265904646!GO:0033170;DNA-protein loading ATPase activity;0.0251808184622001!GO:0003689;DNA clamp loader activity;0.0251808184622001!GO:0030660;Golgi-associated vesicle membrane;0.0257344472890079!GO:0006301;postreplication repair;0.0258024575693!GO:0042626;ATPase activity, coupled to transmembrane movement of substances;0.0264423004535342!GO:0005784;translocon complex;0.026591840325315!GO:0043189;H4/H2A histone acetyltransferase complex;0.0270592464405826!GO:0019843;rRNA binding;0.0270592464405826!GO:0008408;3'-5' exonuclease activity;0.0271604990249764!GO:0051287;NAD binding;0.02788766939911!GO:0030518;steroid hormone receptor signaling pathway;0.0291877250307214!GO:0016820;hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances;0.0309092845637802!GO:0030427;site of polarized growth;0.0309092845637802!GO:0060052;neurofilament cytoskeleton organization and biogenesis;0.0312650454349218!GO:0005814;centriole;0.0312848143695586!GO:0046365;monosaccharide catabolic process;0.0317189917535336!GO:0000790;nuclear chromatin;0.031999482474787!GO:0051252;regulation of RNA metabolic process;0.032134552598754!GO:0000097;sulfur amino acid biosynthetic process;0.0322545295738783!GO:0009127;purine nucleoside monophosphate biosynthetic process;0.0322545295738783!GO:0009167;purine ribonucleoside monophosphate metabolic process;0.0322545295738783!GO:0009126;purine nucleoside monophosphate metabolic process;0.0322545295738783!GO:0009168;purine ribonucleoside monophosphate biosynthetic process;0.0322545295738783!GO:0006818;hydrogen transport;0.032605853687063!GO:0004523;ribonuclease H activity;0.0326618235678158!GO:0046914;transition metal ion binding;0.0327523323196912!GO:0030384;phosphoinositide metabolic process;0.0329354002988099!GO:0004721;phosphoprotein phosphatase activity;0.0336108590694132!GO:0030119;AP-type membrane coat adaptor complex;0.0336866309818902!GO:0007007;inner mitochondrial membrane organization and biogenesis;0.0336866309818902!GO:0016860;intramolecular oxidoreductase activity;0.0340173874107733!GO:0003730;mRNA 3'-UTR binding;0.034109619596776!GO:0050178;phenylpyruvate tautomerase activity;0.0351092202606743!GO:0000123;histone acetyltransferase complex;0.0355200594706486!GO:0000086;G2/M transition of mitotic cell cycle;0.0355477128550714!GO:0005791;rough endoplasmic reticulum;0.0358700026866994!GO:0007094;mitotic cell cycle spindle assembly checkpoint;0.0359066684595645!GO:0005881;cytoplasmic microtubule;0.0359066684595645!GO:0005885;Arp2/3 protein complex;0.0360631511013433!GO:0008190;eukaryotic initiation factor 4E binding;0.0376359168789151!GO:0007019;microtubule depolymerization;0.0382701177351956!GO:0006406;mRNA export from nucleus;0.0384565211442765!GO:0042054;histone methyltransferase activity;0.0387034343549884!GO:0000152;nuclear ubiquitin ligase complex;0.0390815662206674!GO:0015992;proton transport;0.0395746356460952!GO:0022406;membrane docking;0.0403358900203891!GO:0048278;vesicle docking;0.0403358900203891!GO:0043624;cellular protein complex disassembly;0.0410212069978075!GO:0003985;acetyl-CoA C-acetyltransferase activity;0.041030243929167!GO:0007096;regulation of exit from mitosis;0.0413151628161965!GO:0010458;exit from mitosis;0.0413151628161965!GO:0006221;pyrimidine nucleotide biosynthetic process;0.0413151628161965!GO:0004310;farnesyl-diphosphate farnesyltransferase activity;0.0415868473183707!GO:0008652;amino acid biosynthetic process;0.0419804773144484!GO:0000209;protein polyubiquitination;0.0419804773144484!GO:0005905;coated pit;0.0422460937547505!GO:0032981;mitochondrial respiratory chain complex I assembly;0.0422460937547505!GO:0010257;NADH dehydrogenase complex assembly;0.0422460937547505!GO:0033108;mitochondrial respiratory chain complex assembly;0.0422460937547505!GO:0006505;GPI anchor metabolic process;0.0423813037879674!GO:0016417;S-acyltransferase activity;0.0423813037879674!GO:0031111;negative regulation of microtubule polymerization or depolymerization;0.0429756067083406!GO:0012501;programmed cell death;0.0430495256549975!GO:0005844;polysome;0.0434840904020446!GO:0004239;methionyl aminopeptidase activity;0.0434840904020446!GO:0000062;acyl-CoA binding;0.0437405667395932!GO:0019320;hexose catabolic process;0.043950930856875!GO:0046164;alcohol catabolic process;0.0439971286311963!GO:0006915;apoptosis;0.044229706481797!GO:0045815;positive regulation of gene expression, epigenetic;0.0443376617803405!GO:0005689;U12-dependent spliceosome;0.0444450243237055!GO:0006266;DNA ligation;0.0444450243237055!GO:0030131;clathrin adaptor complex;0.0445908145648531!GO:0045892;negative regulation of transcription, DNA-dependent;0.0446154209328657!GO:0031536;positive regulation of exit from mitosis;0.0447339888988879!GO:0031252;leading edge;0.0454724520300832!GO:0005652;nuclear lamina;0.0454840621111896!GO:0016796;exonuclease activity, active with either ribo- or deoxyribonucleic acids and producing 5'-phosphomonoesters;0.0455442528918577!GO:0045502;dynein binding;0.0458622104244136!GO:0042706;eye photoreceptor cell fate commitment;0.0459954372253442!GO:0046552;photoreceptor cell fate commitment;0.0459954372253442!GO:0000118;histone deacetylase complex;0.046196516238952!GO:0008088;axon cargo transport;0.0462458995422438!GO:0032039;integrator complex;0.0465294883812634!GO:0005658;alpha DNA polymerase:primase complex;0.0468448423859727!GO:0006506;GPI anchor biosynthetic process;0.0475494605127896!GO:0042770;DNA damage response, signal transduction;0.0479334908689158!GO:0050811;GABA receptor binding;0.0479543709238335!GO:0005732;small nucleolar ribonucleoprotein complex;0.0480968919457245!GO:0051053;negative regulation of DNA metabolic process;0.048944128239057!GO:0012506;vesicle membrane;0.0496912991420811!GO:0030865;cortical cytoskeleton organization and biogenesis;0.0498388474999486 | |||
|sample_id=10842 | |sample_id=10842 | ||
|sample_note= | |sample_note= | ||
| Line 76: | Line 102: | ||
|sample_tissue=lung | |sample_tissue=lung | ||
|top_motifs=CRX:4.36477954637;NANOG:3.29997853223;POU6F1:3.10311779936;VSX1,2:2.77848897349;PITX1..3:2.59487338469;NFY{A,B,C}:2.19840839167;AHR_ARNT_ARNT2:2.11727886659;NKX2-3_NKX2-5:2.02193876659;PAX8:1.98745347992;ADNP_IRX_SIX_ZHX:1.98575310233;BREu{core}:1.97170296338;POU1F1:1.96256366754;ZBTB16:1.91671021939;TOPORS:1.87180433538;TAL1_TCF{3,4,12}:1.81141245812;HOX{A6,A7,B6,B7}:1.78612966557;TEF:1.71505436692;GFI1:1.67316857931;LHX3,4:1.63770727821;NKX2-1,4:1.60667206452;E2F1..5:1.56555732981;PAX3,7:1.50752693519;FOXM1:1.4795605899;NRF1:1.45182642102;OCT4_SOX2{dimer}:1.4475094349;PATZ1:1.34490600076;RORA:1.31062801572;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:1.3084272642;TFDP1:1.27612572903;AIRE:1.26666488206;STAT5{A,B}:1.26621564749;RREB1:1.25562281135;YY1:1.24416026282;SOX{8,9,10}:1.22866201757;PDX1:1.19835135403;FOXP1:1.19371102493;ZNF143:1.18016156692;ZIC1..3:1.10203824904;ZFP161:1.10159914466;POU3F1..4:1.09853640982;MYOD1:1.09035391104;PBX1:1.05095744667;PRRX1,2:1.00473420805;MYB:0.990656617193;FOXQ1:0.905966414708;BPTF:0.902373282008;POU2F1..3:0.846935199517;EVI1:0.801097107363;CREB1:0.770455387974;GATA4:0.750890844663;PAX1,9:0.746411311557;ONECUT1,2:0.740691374546;FOX{F1,F2,J1}:0.684627754018;RFX1:0.674886848279;NR6A1:0.671975389695;CDX1,2,4:0.659990341906;CUX2:0.638805517176;CDC5L:0.615228618932;HIF1A:0.583734786638;ELK1,4_GABP{A,B1}:0.535874958949;HMGA1,2:0.534182732283;SOX17:0.525543906581;PAX5:0.51654166935;ARID5B:0.515399739796;MZF1:0.499678756278;ZNF384:0.483386321245;EN1,2:0.461512362197;RBPJ:0.454052408105;IKZF2:0.452260481242;PAX4:0.443842164194;JUN:0.434297562888;FOX{I1,J2}:0.425034674417;NKX6-1,2:0.418182305038;ATF4:0.409043936357;ATF5_CREB3:0.405331530665;ALX1:0.374203498213;FOXA2:0.363961577431;REST:0.361242151285;HOX{A4,D4}:0.351145951936;HOX{A5,B5}:0.34750049711;GATA6:0.320007114698;FOXP3:0.307091476912;LEF1_TCF7_TCF7L1,2:0.275486189661;ZBTB6:0.269142507889;ALX4:0.240786840929;HBP1_HMGB_SSRP1_UBTF:0.230720313587;SP1:0.217668463975;HOXA9_MEIS1:0.191941353661;PAX6:0.1858660048;NFIL3:0.179689639783;KLF4:0.166046485091;UFEwm:0.124634824618;MEF2{A,B,C,D}:0.122801866616;PRDM1:0.122469413075;SNAI1..3:0.0774079465515;RFX2..5_RFXANK_RFXAP:0.0770947843821;bHLH_family:0.0757371399054;XBP1:0.0527096105115;NHLH1,2:0.0511209276205;GTF2I:0.0127352842251;LMO2:0.0116266358904;NKX3-1:-0.0240431167322;AR:-0.0299646242357;MYFfamily:-0.0310839805874;NR1H4:-0.0358398473252;PAX2:-0.0480209486595;HNF1A:-0.0842916697796;FOXD3:-0.111978496465;NKX2-2,8:-0.120341548642;MED-1{core}:-0.145457781499;ZNF423:-0.183983671993;ESRRA:-0.217439952733;TFAP2B:-0.218531708361;SOX2:-0.256000501344;POU5F1:-0.271912134619;XCPE1{core}:-0.29651205554;MTF1:-0.315042100359;HES1:-0.316086333111;DBP:-0.327747862703;FOSL2:-0.343311260426;ZEB1:-0.350272379993;HNF4A_NR2F1,2:-0.350459062142;GFI1B:-0.385123095732;HAND1,2:-0.418179229321;FOX{D1,D2}:-0.419168867585;SOX5:-0.427218220652;NR5A1,2:-0.442844012024;T:-0.449841514683;TGIF1:-0.487356031226;EGR1..3:-0.49024696085;FOXN1:-0.492179192461;HSF1,2:-0.49760210339;NKX3-2:-0.530637116041;HIC1:-0.532746031251;MTE{core}:-0.540567092756;GCM1,2:-0.550812136853;NFKB1_REL_RELA:-0.589011588469;TBX4,5:-0.59585116697;ATF2:-0.596022128838;TBP:-0.598692716038;NFE2:-0.600285514861;NR3C1:-0.613416085238;MAZ:-0.617814292017;IKZF1:-0.625316542902;ATF6:-0.632530007633;SMAD1..7,9:-0.669474730127;NFE2L1:-0.689763480428;FOS_FOS{B,L1}_JUN{B,D}:-0.736374251692;CEBPA,B_DDIT3:-0.740902129924;SPI1:-0.741886250496;SPIB:-0.754039621842;BACH2:-0.773137130734;STAT1,3:-0.775374286104;GTF2A1,2:-0.792757210771;RUNX1..3:-0.81209038258;GZF1:-0.830924138263;NFE2L2:-0.836239523436;MYBL2:-0.852769325451;HLF:-0.852842667452;RXRA_VDR{dimer}:-0.858870945515;MAFB:-0.889643015702;TLX1..3_NFIC{dimer}:-0.901674676631;PPARG:-0.911563217422;TP53:-0.924056771887;RXR{A,B,G}:-0.927256223963;FOXL1:-0.928936898462;FOXO1,3,4:-0.99207026839;TFAP2{A,C}:-1.02483635687;SREBF1,2:-1.02681896321;ELF1,2,4:-1.03126296751;RXR{A,B,G}_{NR1H2,PPAR}dimers:-1.07139344028;SPZ1:-1.09448791655;DMAP1_NCOR{1,2}_SMARC:-1.10545432918;TLX2:-1.11208768688;TEAD1:-1.16309366206;EBF1:-1.17865372108;NANOG{mouse}:-1.23608028345;ZNF148:-1.27565798124;ZNF238:-1.3195619881;ETS1,2:-1.33638467859;IRF7:-1.44374020153;GLI1..3:-1.44551873596;IRF1,2:-1.50797731613;TFAP4:-1.50917067792;SRF:-1.57563656168;EP300:-1.6862174409;HMX1:-1.76130123002;NFATC1..3:-1.78419888108;NFIX:-1.86405856772;STAT2,4,6:-1.89432560545;ESR1:-1.96136570833;TFCP2:-2.33761972468 | |top_motifs=CRX:4.36477954637;NANOG:3.29997853223;POU6F1:3.10311779936;VSX1,2:2.77848897349;PITX1..3:2.59487338469;NFY{A,B,C}:2.19840839167;AHR_ARNT_ARNT2:2.11727886659;NKX2-3_NKX2-5:2.02193876659;PAX8:1.98745347992;ADNP_IRX_SIX_ZHX:1.98575310233;BREu{core}:1.97170296338;POU1F1:1.96256366754;ZBTB16:1.91671021939;TOPORS:1.87180433538;TAL1_TCF{3,4,12}:1.81141245812;HOX{A6,A7,B6,B7}:1.78612966557;TEF:1.71505436692;GFI1:1.67316857931;LHX3,4:1.63770727821;NKX2-1,4:1.60667206452;E2F1..5:1.56555732981;PAX3,7:1.50752693519;FOXM1:1.4795605899;NRF1:1.45182642102;OCT4_SOX2{dimer}:1.4475094349;PATZ1:1.34490600076;RORA:1.31062801572;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:1.3084272642;TFDP1:1.27612572903;AIRE:1.26666488206;STAT5{A,B}:1.26621564749;RREB1:1.25562281135;YY1:1.24416026282;SOX{8,9,10}:1.22866201757;PDX1:1.19835135403;FOXP1:1.19371102493;ZNF143:1.18016156692;ZIC1..3:1.10203824904;ZFP161:1.10159914466;POU3F1..4:1.09853640982;MYOD1:1.09035391104;PBX1:1.05095744667;PRRX1,2:1.00473420805;MYB:0.990656617193;FOXQ1:0.905966414708;BPTF:0.902373282008;POU2F1..3:0.846935199517;EVI1:0.801097107363;CREB1:0.770455387974;GATA4:0.750890844663;PAX1,9:0.746411311557;ONECUT1,2:0.740691374546;FOX{F1,F2,J1}:0.684627754018;RFX1:0.674886848279;NR6A1:0.671975389695;CDX1,2,4:0.659990341906;CUX2:0.638805517176;CDC5L:0.615228618932;HIF1A:0.583734786638;ELK1,4_GABP{A,B1}:0.535874958949;HMGA1,2:0.534182732283;SOX17:0.525543906581;PAX5:0.51654166935;ARID5B:0.515399739796;MZF1:0.499678756278;ZNF384:0.483386321245;EN1,2:0.461512362197;RBPJ:0.454052408105;IKZF2:0.452260481242;PAX4:0.443842164194;JUN:0.434297562888;FOX{I1,J2}:0.425034674417;NKX6-1,2:0.418182305038;ATF4:0.409043936357;ATF5_CREB3:0.405331530665;ALX1:0.374203498213;FOXA2:0.363961577431;REST:0.361242151285;HOX{A4,D4}:0.351145951936;HOX{A5,B5}:0.34750049711;GATA6:0.320007114698;FOXP3:0.307091476912;LEF1_TCF7_TCF7L1,2:0.275486189661;ZBTB6:0.269142507889;ALX4:0.240786840929;HBP1_HMGB_SSRP1_UBTF:0.230720313587;SP1:0.217668463975;HOXA9_MEIS1:0.191941353661;PAX6:0.1858660048;NFIL3:0.179689639783;KLF4:0.166046485091;UFEwm:0.124634824618;MEF2{A,B,C,D}:0.122801866616;PRDM1:0.122469413075;SNAI1..3:0.0774079465515;RFX2..5_RFXANK_RFXAP:0.0770947843821;bHLH_family:0.0757371399054;XBP1:0.0527096105115;NHLH1,2:0.0511209276205;GTF2I:0.0127352842251;LMO2:0.0116266358904;NKX3-1:-0.0240431167322;AR:-0.0299646242357;MYFfamily:-0.0310839805874;NR1H4:-0.0358398473252;PAX2:-0.0480209486595;HNF1A:-0.0842916697796;FOXD3:-0.111978496465;NKX2-2,8:-0.120341548642;MED-1{core}:-0.145457781499;ZNF423:-0.183983671993;ESRRA:-0.217439952733;TFAP2B:-0.218531708361;SOX2:-0.256000501344;POU5F1:-0.271912134619;XCPE1{core}:-0.29651205554;MTF1:-0.315042100359;HES1:-0.316086333111;DBP:-0.327747862703;FOSL2:-0.343311260426;ZEB1:-0.350272379993;HNF4A_NR2F1,2:-0.350459062142;GFI1B:-0.385123095732;HAND1,2:-0.418179229321;FOX{D1,D2}:-0.419168867585;SOX5:-0.427218220652;NR5A1,2:-0.442844012024;T:-0.449841514683;TGIF1:-0.487356031226;EGR1..3:-0.49024696085;FOXN1:-0.492179192461;HSF1,2:-0.49760210339;NKX3-2:-0.530637116041;HIC1:-0.532746031251;MTE{core}:-0.540567092756;GCM1,2:-0.550812136853;NFKB1_REL_RELA:-0.589011588469;TBX4,5:-0.59585116697;ATF2:-0.596022128838;TBP:-0.598692716038;NFE2:-0.600285514861;NR3C1:-0.613416085238;MAZ:-0.617814292017;IKZF1:-0.625316542902;ATF6:-0.632530007633;SMAD1..7,9:-0.669474730127;NFE2L1:-0.689763480428;FOS_FOS{B,L1}_JUN{B,D}:-0.736374251692;CEBPA,B_DDIT3:-0.740902129924;SPI1:-0.741886250496;SPIB:-0.754039621842;BACH2:-0.773137130734;STAT1,3:-0.775374286104;GTF2A1,2:-0.792757210771;RUNX1..3:-0.81209038258;GZF1:-0.830924138263;NFE2L2:-0.836239523436;MYBL2:-0.852769325451;HLF:-0.852842667452;RXRA_VDR{dimer}:-0.858870945515;MAFB:-0.889643015702;TLX1..3_NFIC{dimer}:-0.901674676631;PPARG:-0.911563217422;TP53:-0.924056771887;RXR{A,B,G}:-0.927256223963;FOXL1:-0.928936898462;FOXO1,3,4:-0.99207026839;TFAP2{A,C}:-1.02483635687;SREBF1,2:-1.02681896321;ELF1,2,4:-1.03126296751;RXR{A,B,G}_{NR1H2,PPAR}dimers:-1.07139344028;SPZ1:-1.09448791655;DMAP1_NCOR{1,2}_SMARC:-1.10545432918;TLX2:-1.11208768688;TEAD1:-1.16309366206;EBF1:-1.17865372108;NANOG{mouse}:-1.23608028345;ZNF148:-1.27565798124;ZNF238:-1.3195619881;ETS1,2:-1.33638467859;IRF7:-1.44374020153;GLI1..3:-1.44551873596;IRF1,2:-1.50797731613;TFAP4:-1.50917067792;SRF:-1.57563656168;EP300:-1.6862174409;HMX1:-1.76130123002;NFATC1..3:-1.78419888108;NFIX:-1.86405856772;STAT2,4,6:-1.89432560545;ESR1:-1.96136570833;TFCP2:-2.33761972468 | ||
|xref= | |||
|zenbu_report=https://fantom.gsc.riken.jp/zenbu/reports/#miRNA_expression_atlas_human;search_select_hide=table111:FF:10842-111E5;search_select_hide=table117:FF:10842-111E5 | |||
}} | }} | ||
Latest revision as of 15:09, 3 June 2020
| Name: | small cell lung carcinoma cell line:NCI-H82 |
|---|---|
| Species: | Human (Homo sapiens) |
| Library ID: | CNhs12809 |
| Sample type: | cell lines |
| Genomic View: | UCSC |
| RefEX: | Specific genes |
| CAGEd-oPOSSUM: | link |
| ZENBU report : | link |
| Additional information | ||||||||||||||||||||||||||||
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Sample information
RNA information
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| CAGE Accession numbers | ||||||||||||||||||||||||||||||||||||||||||||||
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| Download raw sequence, BAM & CTSS | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
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| RNA-Seq Accession numbers | ||||||||||||||||||||||||||||||||
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Relative expression to median (log10)
Transcription factors with enriched expression in this sampleRanked list of transcription factor promoter expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.
Co-expression clusters with enriched expression in this sampleRanked list of co-expression cluster expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed. <br>Analyst:NA <br><br>link to dataset.<br>data
Repeat families with enriched expression in this sample<b>Summary:</b>Ranked list of repeat family expression in this sample relative tothe median expression in the FANTOM5 collection is shown. Value is log10transformed.<br><b>Analyst:</b>NA<br><br>link to dataset.<br>data
TFBS(DNA)motifs over-represented in proximal region of promoters active in this sample
JASPAR motifs<b>Summary:</b>Association of JASPAR motif to the promoter expression in thissample. Pearson's correlation between the number of TFBSs estimated byusing the position-weight matrix for each promoter and its expression isexpressed as Z-score by taking the ones based on random position-weightmatrix, and the tail probability of the normal distribution correspondingto the Z-score is taken as the resulting P-value. Lower P-value indicatesmore (non-random) association of the motif to promoter expression<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data
library id: CNhs12809
FANTOM5 phase1 novel unique motifs<b>Summary:</b>Association of the 169 novel and unique motifs discovered in FANTOM5 phase1 in this sample. Among the de-novo motifs discovered by DMF, HOMER,ChIPMunk, and ScanAll, only novel motifs are selected after comparison with known motif sets, and their clustering based on MACRO-APE resulted in169 novel and unique motifs. Their association to the promoter expression is evaluated in the same way to the JASPAR motif above<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data
library id: CNhs12809
| Novel motif | Logo | P-value |
|---|---|---|
| 1 | 1 | 0.818 |
| 10 | 10 | 0.339 |
| 100 | 100 | 0.615 |
| 101 | 101 | 0.763 |
| 102 | 102 | 0.4 |
| 103 | 103 | 0.05 |
| 104 | 104 | 0.717 |
| 105 | 105 | 0.46 |
| 106 | 106 | 0.00434 |
| 107 | 107 | 0.00295 |
| 108 | 108 | 0.797 |
| 109 | 109 | 0.0622 |
| 11 | 11 | 0.328 |
| 110 | 110 | 0.734 |
| 111 | 111 | 0.999 |
| 112 | 112 | 0.281 |
| 113 | 113 | 0.696 |
| 114 | 114 | 0.22 |
| 115 | 115 | 0.521 |
| 116 | 116 | 0.952 |
| 117 | 117 | 0.359 |
| 118 | 118 | 0.967 |
| 119 | 119 | 0.408 |
| 12 | 12 | 0.499 |
| 120 | 120 | 0.477 |
| 121 | 121 | 0.876 |
| 122 | 122 | 0.939 |
| 123 | 123 | 0.165 |
| 124 | 124 | 0.637 |
| 125 | 125 | 0.454 |
| 126 | 126 | 0.419 |
| 127 | 127 | 0.703 |
| 128 | 128 | 0.0875 |
| 129 | 129 | 0.593 |
| 13 | 13 | 0.869 |
| 130 | 130 | 0.575 |
| 131 | 131 | 0.463 |
| 132 | 132 | 0.181 |
| 133 | 133 | 0.853 |
| 134 | 134 | 0.935 |
| 135 | 135 | 0.016 |
| 136 | 136 | 0.415 |
| 137 | 137 | 0.138 |
| 138 | 138 | 0.276 |
| 139 | 139 | 0.054 |
| 14 | 14 | 0.386 |
| 140 | 140 | 0.618 |
| 141 | 141 | 0.181 |
| 142 | 142 | 0.814 |
| 143 | 143 | 0.266 |
| 144 | 144 | 0.649 |
| 145 | 145 | 0.495 |
| 146 | 146 | 0.436 |
| 147 | 147 | 0.935 |
| 148 | 148 | 0.0189 |
| 149 | 149 | 0.0616 |
| 15 | 15 | 0.32 |
| 150 | 150 | 0.38 |
| 151 | 151 | 0.168 |
| 152 | 152 | 0.00463 |
| 153 | 153 | 0.858 |
| 154 | 154 | 0.729 |
| 155 | 155 | 0.923 |
| 156 | 156 | 0.805 |
| 157 | 157 | 0.224 |
| 158 | 158 | 0.257 |
| 159 | 159 | 0.0351 |
| 16 | 16 | 0.132 |
| 160 | 160 | 0.684 |
| 161 | 161 | 0.294 |
| 162 | 162 | 0.537 |
| 163 | 163 | 0.238 |
| 164 | 164 | 0.195 |
| 165 | 165 | 0.106 |
| 166 | 166 | 0.616 |
| 167 | 167 | 0.719 |
| 168 | 168 | 0.0541 |
| 169 | 169 | 0.02 |
| 17 | 17 | 0.386 |
| 18 | 18 | 0.484 |
| 19 | 19 | 0.299 |
| 2 | 2 | 0.0708 |
| 20 | 20 | 0.391 |
| 21 | 21 | 0.798 |
| 22 | 22 | 0.0713 |
| 23 | 23 | 0.00859 |
| 24 | 24 | 0.238 |
| 25 | 25 | 0.555 |
| 26 | 26 | 0.408 |
| 27 | 27 | 0.0342 |
| 28 | 28 | 0.952 |
| 29 | 29 | 0.424 |
| 3 | 3 | 0.239 |
| 30 | 30 | 0.15 |
| 31 | 31 | 0.535 |
| 32 | 32 | 0.00656 |
| 33 | 33 | 0.211 |
| 34 | 34 | 0.281 |
| 35 | 35 | 0.374 |
| 36 | 36 | 0.882 |
| 37 | 37 | 0.0873 |
| 38 | 38 | 0.352 |
| 39 | 39 | 0.148 |
| 4 | 4 | 0.474 |
| 40 | 40 | 0.958 |
| 41 | 41 | 0.133 |
| 42 | 42 | 0.651 |
| 43 | 43 | 0.157 |
| 44 | 44 | 0.93 |
| 45 | 45 | 0.245 |
| 46 | 46 | 0.415 |
| 47 | 47 | 0.828 |
| 48 | 48 | 0.64 |
| 49 | 49 | 0.534 |
| 5 | 5 | 0.113 |
| 50 | 50 | 0.442 |
| 51 | 51 | 0.367 |
| 52 | 52 | 0.17 |
| 53 | 53 | 0.896 |
| 54 | 54 | 0.323 |
| 55 | 55 | 0.0492 |
| 56 | 56 | 0.434 |
| 57 | 57 | 0.581 |
| 58 | 58 | 0.407 |
| 59 | 59 | 0.0569 |
| 6 | 6 | 0.76 |
| 60 | 60 | 0.0224 |
| 61 | 61 | 0.645 |
| 62 | 62 | 0.183 |
| 63 | 63 | 0.179 |
| 64 | 64 | 0.962 |
| 65 | 65 | 0.075 |
| 66 | 66 | 0.155 |
| 67 | 67 | 0.866 |
| 68 | 68 | 0.944 |
| 69 | 69 | 0.852 |
| 7 | 7 | 0.548 |
| 70 | 70 | 0.0162 |
| 71 | 71 | 0.109 |
| 72 | 72 | 0.0651 |
| 73 | 73 | 0.00261 |
| 74 | 74 | 0.0919 |
| 75 | 75 | 0.404 |
| 76 | 76 | 0.793 |
| 77 | 77 | 0.0457 |
| 78 | 78 | 0.99 |
| 79 | 79 | 0.672 |
| 8 | 8 | 0.386 |
| 80 | 80 | 0.0157 |
| 81 | 81 | 0.472 |
| 82 | 82 | 0.125 |
| 83 | 83 | 0.418 |
| 84 | 84 | 0.239 |
| 85 | 85 | 0.0292 |
| 86 | 86 | 0.506 |
| 87 | 87 | 0.219 |
| 88 | 88 | 0.989 |
| 89 | 89 | 0.00881 |
| 9 | 9 | 0.0881 |
| 90 | 90 | 0.723 |
| 91 | 91 | 0.324 |
| 92 | 92 | 0.0438 |
| 93 | 93 | 0.645 |
| 94 | 94 | 0.236 |
| 95 | 95 | 0.236 |
| 96 | 96 | 0.104 |
| 97 | 97 | 0.41 |
| 98 | 98 | 0.489 |
| 99 | 99 | 0.859 |
de novo motifs identified by HOMER in promoters active in this sample<b>Summary:</b>The result of HOMER in this sample is shown.<br><b>Analyst:</b>NA <br>
library id: CNhs12809
FANTOM5 (FF) ontology
Direct parent terms
is_a relathionship
EFO:0002091 biological replicate
FF:0000210 human sample
FF:0100189 small cell lung cancer cell sample
FF:0103026 NCI-H82 cell sample
Ancestor terms (non development)<b>Summary:</b>Connected ontology terms with is_a, part_of or located_in relationship <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source data<br>data
CL: Cell type
0000000 (cell), 0000000 (cell)
0000003 (native cell)
0000548 (animal cell)
0000066 (epithelial cell)
0000082 (epithelial cell of lung)
0000255 (eukaryotic cell)
DOID: Disease
4 (disease)
0050686 (organ system cancer)
0050615 (respiratory system cancer)
162 (cancer)
14566 (disease of cellular proliferation)
0050687 (cell type cancer)
1324 (lung cancer)
305 (carcinoma)
1325 (bronchus cancer)
3905 (lung carcinoma)
5409 (lung small cell carcinoma)
3904 (bronchogenic carcinoma)
UBERON: Anatomy
0000468 (multi-cellular organism)
0002048 (lung)
0002100 (trunk)
0000483 (epithelium)
0000479 (tissue)
0000064 (organ part)
0004119 (endoderm-derived structure)
0000466 (immaterial anatomical entity)
0000062 (organ)
0004111 (anatomical conduit)
0000475 (organism subdivision)
0000061 (anatomical structure)
0000465 (material anatomical entity)
0000063 (organ segment)
0004802 (respiratory tract epithelium)
0000025 (tube)
0005911 (endo-epithelium)
0000477 (anatomical cluster)
0000467 (anatomical system)
0001062 (anatomical entity)
0000480 (anatomical group)
0000119 (cell layer)
0009569 (subdivision of trunk)
0005178 (thoracic cavity element)
0000072 (segment of respiratory tract)
0005177 (trunk region element)
0004807 (respiratory system epithelium)
0000117 (respiratory tube)
0000171 (respiration organ)
0000115 (lung epithelium)
0000464 (anatomical space)
0005181 (thoracic segment organ)
0010317 (germ layer / neural crest derived structure)
0000065 (respiratory tract)
0000170 (pair of lungs)
0001004 (respiratory system)
0002224 (thoracic cavity)
0000915 (thoracic segment of trunk)
FF: FANTOM5
0000102 (sample by type)
0000003 (cell line sample)
0000210 (human sample)
0000101 (sample by species)
0000001 (sample)
0100297 (carcinoma cell line sample)
0100353 (lung cell line sample)
0102061 (bronchogenic carcinoma cell sample)
0101120 (epithelial cell line sample)
0100762 (lung cancer cell line sample)
0102206 (small cell lung cancer cell line sample)
0100189 (small cell lung cancer cell sample)
0103026 (NCI-H82 cell sample)
Ancestor terms (development)<b>Summary:</b>Connected ontology terms with develops_from, derives_from or preceded_by relationship <br><b>Analyst:</b> Hideya Kawaji <br><br>link to source data<br>data
UBERON:0001041 (foregut)
UBERON:0008947 (respiratory primordium)
UBERON:0002532 (epiblast (generic))
UBERON:0006595 (presumptive endoderm)
UBERON:0010316 (germ layer / neural crest)
