FF:11869-125B6: Difference between revisions
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{{f5samples | {{f5samples | ||
|ancestors_in_anatomy_facet= | |DRA_sample_Accession=CAGE@SAMD00005846 | ||
|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003 | |accession_numbers=CAGE;DRX008135;DRR009007;DRZ000432;DRZ001817;DRZ011782;DRZ013167 | ||
|ancestors_in_anatomy_facet= | |||
|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000988,CL:0000548,CL:0000763,CL:0002371,CL:0000766,CL:0000219,CL:0000325,CL:0000473,CL:0000234,CL:0000738,CL:0002087,CL:0000255,CL:0000576,CL:0000860,CL:0002057 | |||
|ancestors_in_disease_facet= | |ancestors_in_disease_facet= | ||
|ancestors_in_ff_facet=FF:0000102,FF:0000210,FF:0000002,FF:0000101,FF:0000001,FF:0000625,FF:0000350,FF:0000630,FF:0011102 | |||
|comment= | |comment= | ||
|created_by= | |created_by= | ||
|creation_date= | |creation_date= | ||
|data_phase=2 | |||
|datafreeze_phase=2 | |||
|def= | |def= | ||
|expression_enrichment_score=chr2:68592406..68592424,+!p1@PLEK!3.08!1202.36!PLEK;;chr11:47400078..47400106,-!p1@SPI1!2.87!746.33!SPI1;;chr12:54778471..54778528,-!p1@ZNF385A!2.56!357.94!ZNF385A;;chr7:115670804..115670825,-!p1@TFEC!2.43!265.90!TFEC;;chr21:34442439..34442455,+!p1@OLIG1!2.40!249.16!OLIG1;;chr20:39317868..39317884,-!p1@MAFB!2.24!1930.79!MAFB;;chr10:64576105..64576133,-!p1@EGR2!2.19!305.41!EGR2;;chr11:47399947..47399961,-!p3@SPI1!2.18!150.85!SPI1;;chr11:47400062..47400077,-!p2@SPI1!2.09!122.26!SPI1;;chr16:85932760..85932775,+!p1@IRF8!2.04!107.85!IRF8;;chr2:70142232..70142251,+!p1@MXD1!1.99!510.88!MXD1;;chr6:106534192..106534224,+!p1@PRDM1!1.94!234.75!PRDM1;;chr11:47399996..47400014,-!p4@SPI1!1.92!82.51!SPI1;;chr11:47400032..47400043,-!p5@SPI1!1.88!74.61!SPI1;;chr2:145277640..145277771,-!p1@ZEB2!1.83!833.26!ZEB2;;chr19:50432132..50432217,+!p2@ATF5!1.81!75.77!ATF5;;chr1:25256756..25256774,-!p1@RUNX3!1.80!112.50!RUNX3;;chr14:35872453..35872485,-!p2@NFKBIA!1.77!139.22!NFKBIA;;chr10:31288398..31288455,-!p2@ZNF438!1.72!60.20!ZNF438;;chr19:45971246..45971265,+!p1@FOSB!1.68!826.05!FOSB;;chr12:72056749..72056767,+!p6@THAP2!1.68!51.60!THAP2;;chr12:54778351..54778378,-!p6@ZNF385A!1.68!47.18!ZNF385A;;chr10:35484053..35484076,+!p1@CREM!1.67!112.03!CREM;;chr10:51572408..51572454,+!p3@NCOA4!1.63!234.75!NCOA4;;chr12:72056800..72056834,+!p1@THAP2!1.63!55.55!THAP2;;chr6:106534230..106534254,+!p2@PRDM1!1.60!94.60!PRDM1;;chr14:35873947..35873965,-!p1@NFKBIA!1.59!2243.17!NFKBIA;;chr10:51572339..51572376,+!p4@NCOA4!1.59!82.51!NCOA4;;chr8:22550982..22550999,-!p1@EGR3!1.58!100.41!EGR3;;chr10:31288370..31288393,-!p3@ZNF438!1.58!36.96!ZNF438;;chr7:50344289..50344323,+!p1@IKZF1!1.56!35.56!IKZF1;;chr2:145275162..145275202,-!p2@ZEB2!1.55!194.54!ZEB2;;chr2:157189180..157189290,-!p1@NR4A2!1.55!173.86!NR4A2;;chr11:47400045..47400060,-!p6@SPI1!1.54!33.93!SPI1;;chr6:44233252..44233296,-!p1@NFKBIE!1.53!313.08!NFKBIE;;chr14:35872962..35873025,-!p3@NFKBIA!1.53!81.82!NFKBIA;;chr12:52445218..52445237,+!p1@NR4A1!1.52!382.58!NR4A1;;chr2:145277882..145277967,-!p3@ZEB2!1.52!55.09!ZEB2;;chr10:104155659..104155676,+!p4@NFKB2!1.52!39.51!NFKB2;;chr10:64018918..64018936,+!p2@ZNF365!1.52!31.84!ZNF365;;chr21:34442540..34442560,+!p2@OLIG1!1.50!30.68!OLIG1;;chr16:31885093..31885165,+!p1@ZNF267!1.49!434.64!ZNF267;;chr2:68592394..68592405,+!p2@PLEK!1.48!29.05!PLEK;;chr4:103422499..103422632,+!p1@NFKB1!1.47!564.80!NFKB1;;chr10:104155480..104155534,+!p2@NFKB2!1.47!176.88!NFKB2;;chr21:34398234..34398250,+!p1@OLIG2!1.47!28.36!OLIG2;;chr1:212782094..212782109,+!p1@ATF3!1.46!721.23!ATF3;;chr10:104154246..104154347,+!p3@NFKB2!1.46!163.17!NFKB2;;chr19:36391434..36391450,-!p1@NFKBID!1.46!53.23!NFKBID;;chr12:72056773..72056796,+!p3@THAP2!1.46!36.03!THAP2;;chr2:61108695..61108753,+!p1@REL!1.45!179.90!REL;;chr9:102584262..102584276,+!p1@NR4A3!1.45!59.73!NR4A3;;chr7:128577972..128578047,+!p1@IRF5!1.45!41.84!IRF5;;chr6:144385698..144385742,-!p2@PLAGL1!1.45!32.77!PLAGL1;;chr19:45252008..45252024,+!p2@BCL3!1.44!84.84!BCL3;;chrX:129244454..129244488,-!p1@ELF4!1.40!169.67!ELF4;;chr13:41593425..41593480,-!p1@ELF1!1.40!148.29!ELF1;;chr1:38325227..38325246,-!p2@MTF1!1.38!30.91!MTF1;;chr11:47399920..47399931,-!p7@SPI1!1.38!23.24!SPI1;;chr19:42636586..42636607,-!p1@POU2F2!1.37!60.90!POU2F2;;chr9:102584159..102584174,+!p2@NR4A3!1.37!39.51!NR4A3;;chr2:70314240..70314256,+!p4@PCBP1!1.36!44.39!PCBP1;;chr9:102584128..102584144,+!p3@NR4A3!1.36!41.14!NR4A3;;chr3:12330560..12330579,+!p1@PPARG!1.36!24.87!PPARG;;chr11:65430554..65430579,-!p3@RELA!1.35!53.46!RELA;;chrX:153305787..153305807,-!p3@MECP2!1.33!20.22!MECP2;;chr1:37940170..37940190,+!p1@ZC3H12A!1.31!231.73!ZC3H12A;;chr6:15246200..15246214,+!p2@JARID2!1.31!52.30!JARID2;;chr2:28618532..28618610,+!p4@FOSL2!1.31!33.00!FOSL2;;chr22:38597987..38598021,+!p2@MAFF!1.29!111.33!MAFF;;chr6:12012170..12012245,+!p1@HIVEP1!1.29!92.04!HIVEP1;;chr3:12329397..12329433,+!p2@PPARG!1.29!41.60!PPARG;;chr21:36260295..36260310,-!p3@RUNX1!1.29!29.52!RUNX1;;chr2:145277589..145277612,-!p12@ZEB2!1.29!18.59!ZEB2;;chr20:48599506..48599526,+!p1@SNAI1!1.28!113.19!SNAI1;;chr19:50432104..50432126,+!p6@ATF5!1.27!17.43!ATF5;;chr4:106068026..106068084,+!p1@TET2!1.26!152.47!TET2;;chr21:30671235..30671253,+!p1@BACH1!1.25!211.28!BACH1;;chr21:30671690..30671762,+!p2@BACH1!1.25!56.71!BACH1;;chr14:35872926..35872951,-!p4@NFKBIA!1.25!23.71!NFKBIA;;chr20:48807351..48807384,+!p1@CEBPB!1.24!1637.23!CEBPB;;chr12:48298765..48298783,-!p2@VDR!1.24!34.17!VDR;;chr2:70167296..70167306,+!p3@MXD1!1.23!24.17!MXD1;;chr3:101546827..101546847,+!p2@NFKBIZ!1.22!21.85!NFKBIZ;;chr17:38497662..38497713,+!p4@RARA!1.22!18.13!RARA;;chr7:17338266..17338282,+!p1@AHR!1.21!162.24!AHR;;chr1:221052776..221052799,+!p1@HLX!1.21!27.43!HLX;;chr19:45251395..45251432,+!p8@BCL3!1.21!15.11!BCL3;;chr4:103423079..103423112,+!p4@NFKB1!1.21!15.11!NFKB1;;chr2:28615716..28615733,+!p1@FOSL2!1.20!682.41!FOSL2;;chr10:104155455..104155479,+!p1@NFKB2!1.18!201.75!NFKB2;;chr19:45250948..45250998,+!p3@BCL3!1.18!35.79!BCL3;;chr14:35872494..35872511,-!p5@NFKBIA!1.18!18.59!NFKBIA;;chr3:101568349..101568365,+!p1@NFKBIZ!1.17!709.14!NFKBIZ;;chr9:129567282..129567353,+!p1@ZBTB43!1.17!179.90!ZBTB43;;chr2:238600933..238600985,+!p3@LRRFIP1!1.17!74.84!LRRFIP1;;chr7:17338324..17338341,+!p3@AHR!1.17!46.25!AHR;;chr8:123793988..123794016,+!p1@ZHX2!1.17!24.17!ZHX2;;chr6:106535598..106535637,+!p7@PRDM1!1.17!13.95!PRDM1;;chr8:53373491..53373506,-!p4@ST18!1.17!13.95!ST18;;chr2:97202480..97202499,+!p1@ARID5A!1.16!133.65!ARID5A;;chr12:11802753..11802834,+!p2@ETV6!1.16!65.31!ETV6;;chr21:36421535..36421610,-!p2@RUNX1!1.16!47.65!RUNX1;;chr6:12011943..12012015,+!p2@HIVEP1!1.16!42.77!HIVEP1;;chr18:3449720..3449749,+!p2@TGIF1!1.16!28.36!TGIF1;;chr19:19496539..19496576,+!p8@GATAD2A!1.16!23.71!GATAD2A;;chrX:129244430..129244442,-!p5@ELF4!1.16!13.48!ELF4;;chr21:30672433..30672464,+!p6@BACH1!1.16!13.48!BACH1;;chr11:65430535..65430549,-!p4@RELA!1.15!15.34!RELA;;chr13:41593392..41593403,-!p7@ELF1!1.15!13.25!ELF1;;chr2:145271342..145271377,-!p5@ZEB2!1.15!13.02!ZEB2;;chr18:3449618..3449634,+!p13@TGIF1!1.14!16.04!TGIF1;;chr1:25256439..25256476,-!p3@RUNX3!1.14!12.78!RUNX3;;chr10:31288329..31288353,-!p7@ZNF438!1.14!12.78!ZNF438;;chr1:157108130..157108173,-!p1@ETV3!1.13!90.88!ETV3;;chr12:48298785..48298828,-!p1@VDR!1.13!66.24!VDR;;chr11:615942..615957,-!p1@IRF7!1.12!115.28!IRF7;;chr7:115670792..115670797,-!p2@TFEC!1.12!12.32!TFEC;;chr9:110252035..110252057,-!p1@KLF4!1.11!189.43!KLF4;;chr19:13213662..13213686,-!p1@LYL1!1.11!17.66!LYL1;;chr2:238600998..238601013,+!p5@LRRFIP1!1.11!11.85!LRRFIP1;;chr19:45504688..45504782,+!p1@RELB!1.10!70.19!RELB;;chr1:156470515..156470542,-!p2@MEF2D!1.10!61.36!MEF2D;;chr20:48809000..48809053,+!p12@CEBPB!1.10!15.34!CEBPB;;chr6:391743..391759,+!p1@IRF4!1.10!11.62!IRF4;;chr6:15246261..15246312,+!p1@JARID2!1.09!275.89!JARID2;;chr3:170075436..170075520,+!p1@SKIL!1.09!243.59!SKIL;;chr5:88178983..88179012,-!p1@MEF2C!1.09!86.70!MEF2C;;chr12:96588279..96588299,+!p4@ELK3!1.09!53.92!ELK3;;chr18:3449586..3449617,+!p8@TGIF1!1.07!17.43!TGIF1;;chr14:64970670..64970712,-!p3@ZBTB25!1.06!23.01!ZBTB25;;chr18:3449527..3449582,+!p6@TGIF1!1.06!20.22!TGIF1;;chr12:96588219..96588263,+!p2@ELK3!1.05!74.14!ELK3;;chr12:54785074..54785122,-!p2@ZNF385A!1.05!15.81!ZNF385A;;chr2:145275228..145275241,-!p11@ZEB2!1.05!12.32!ZEB2;;chr9:117150254..117150271,-!p1@AKNA!1.04!27.43!AKNA;;chr4:81104895..81104920,+!p2@PRDM8!1.04!14.88!PRDM8;;chr19:45254529..45254561,+!p10@BCL3!1.04!13.71!BCL3;;chr6:15246741..15246765,+!p9@JARID2!1.04!9.99!JARID2;;chr3:39195037..39195069,-!p2@CSRNP1!1.03!61.13!CSRNP1;;chr19:33793430..33793447,-!p1@CEBPA!1.03!41.14!CEBPA;;chr6:12012249..12012266,+!p5@HIVEP1!1.03!16.97!HIVEP1;;chr8:71316428..71316459,-!p2@NCOA2!1.03!16.50!NCOA2;;chr12:54785054..54785072,-!p4@ZNF385A!1.03!10.92!ZNF385A;;chr9:88969303..88969335,-!p1@ZCCHC6!1.02!90.88!ZCCHC6;;chr2:208394817..208394834,+!p3@CREB1!1.02!39.05!CREB1;;chr17:38474489..38474548,+!p1@RARA!1.01!298.90!RARA;;chr19:45251943..45252006,+!p1@BCL3!1.01!250.09!BCL3;;chr10:3827371..3827386,-!p2@KLF6!1.01!80.19!KLF6;;chr18:3448455..3448480,+!p5@TGIF1!1.01!17.43!TGIF1;;chr9:102584241..102584261,+!p4@NR4A3!1.01!14.64!NR4A3;;chr2:113999360..113999386,-!p4@PAX8!1.01!9.30!PAX8;;chr10:35484090..35484104,+!p6@CREM!1.01!9.30!CREM;;chr2:70142189..70142223,+!p2@MXD1!1.00!66.01!MXD1;;chr7:149470641..149470694,-!p1@ZNF467!1.00!41.84!ZNF467;;chr19:19496624..19496660,+!p3@GATAD2A!1.00!41.84!GATAD2A;;chr2:192015701..192015743,-!p1@STAT4!1.00!12.55!STAT4;;chr14:35872414..35872425,-!p7@NFKBIA!1.00!9.99!NFKBIA;;chr2:231090433..231090469,+!p1@SP140!1.00!9.06!SP140;;chr21:40177845..40177863,+!p1@ETS2!0.99!532.03!ETS2;;chr3:37217736..37217753,-!p2@LRRFIP2!0.99!37.89!LRRFIP2;;chr4:185395633..185395651,-!p2@IRF2!0.99!14.18!IRF2;;chr2:61108771..61108789,+!p4@REL!0.99!13.48!REL;;chr3:39195139..39195150,-!p3@CSRNP1!0.99!11.16!CSRNP1;;chr19:47616992..47617011,-!p4@ZC3H4!0.98!18.83!ZC3H4;;chr20:48807456..48807475,+!p3@CEBPB!0.98!16.73!CEBPB;;chr2:61108808..61108821,+!p3@REL!0.98!10.92!REL;;chr14:35872542..35872553,-!p10@NFKBIA!0.98!8.60!NFKBIA;;chr6:20403916..20403965,+!p3@E2F3!0.97!38.58!E2F3;;chr17:38498594..38498661,+!p2@RARA!0.97!28.59!RARA;;chr12:96588368..96588394,+!p3@ELK3!0.97!23.01!ELK3;;chr8:116681150..116681164,-!p5@TRPS1!0.97!16.73!TRPS1;;chr19:12902289..12902307,+!p1@JUNB!0.96!1903.59!JUNB;;chr9:137217986..137218049,+!p3@RXRA!0.96!23.94!RXRA;;chr17:79885537..79885554,-!p2@MAFG!0.96!16.04!MAFG;;chr5:88179195..88179224,-!p3@MEF2C!0.96!13.25!MEF2C;;chr5:142782823..142782854,-!p3@NR3C1!0.96!11.85!NR3C1;;chr19:45254508..45254528,+!p12@BCL3!0.96!8.83!BCL3;;chr9:102584278..102584285,+!p5@NR4A3!0.96!8.14!NR4A3;;chr3:5020939..5020952,+!p2@BHLHE40!0.95!25.57!BHLHE40;;chr9:3525727..3525828,-!p2@RFX3!0.95!20.69!RFX3;;chr8:116681123..116681143,-!p4@TRPS1!0.95!15.81!TRPS1;;chr3:150126101..150126118,+!p6@TSC22D2!0.95!13.25!TSC22D2;;chr3:12392932..12392962,+!p8@PPARG!0.95!7.90!PPARG;;chr21:36260980..36261011,-!p1@RUNX1!0.94!232.89!RUNX1;;c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| |expression_enrichment_score=chr2:68592406..68592424,+!p1@PLEK!3.08!1202.36!PLEK;;chr11:47400078..47400106,-!p1@SPI1!2.87!746.33!SPI1;;chr12:54778471..54778528,-!p1@ZNF385A!2.56!357.94!ZNF385A;;chr7:115670804..115670825,-!p1@TFEC!2.43!265.90!TFEC;;chr21:34442439..34442455,+!p1@OLIG1!2.40!249.16!OLIG1;;chr20:39317868..39317884,-!p1@MAFB!2.24!1930.79!MAFB;;chr10:64576105..64576133,-!p1@EGR2!2.19!305.41!EGR2;;chr11:47399947..47399961,-!p3@SPI1!2.18!150.85!SPI1;;chr11:47400062..47400077,-!p2@SPI1!2.09!122.26!SPI1;;chr16:85932760..85932775,+!p1@IRF8!2.04!107.85!IRF8;;chr2:70142232..70142251,+!p1@MXD1!1.99!510.88!MXD1;;chr6:106534192..106534224,+!p1@PRDM1!1.94!234.75!PRDM1;;chr11:47399996..47400014,-!p4@SPI1!1.92!82.51!SPI1;;chr11:47400032..47400043,-!p5@SPI1!1.88!74.61!SPI1;;chr2:145277640..145277771,-!p1@ZEB2!1.83!833.26!ZEB2;;chr19:50432132..50432217,+!p2@ATF5!1.81!75.77!ATF5;;chr1:25256756..25256774,-!p1@RUNX3!1.80!112.50!RUNX3;;chr14:35872453..35872485,-!p2@NFKBIA!1.77!139.22!NFKBIA;;chr10:31288398..31288455,-!p2@ZNF438!1.72!60.20!ZNF438;;chr19:45971246..45971265,+!p1@FOSB!1.68!826.05!FOSB;;chr12:72056749..72056767,+!p6@THAP2!1.68!51.60!THAP2;;chr12:54778351..54778378,-!p6@ZNF385A!1.68!47.18!ZNF385A;;chr10:35484053..35484076,+!p1@CREM!1.67!112.03!CREM;;chr10:51572408..51572454,+!p3@NCOA4!1.63!234.75!NCOA4;;chr12:72056800..72056834,+!p1@THAP2!1.63!55.55!THAP2;;chr6:106534230..106534254,+!p2@PRDM1!1.60!94.60!PRDM1;;chr14:35873947..35873965,-!p1@NFKBIA!1.59!2243.17!NFKBIA;;chr10:51572339..51572376,+!p4@NCOA4!1.59!82.51!NCOA4;;chr8:22550982..22550999,-!p1@EGR3!1.58!100.41!EGR3;;chr10:31288370..31288393,-!p3@ZNF438!1.58!36.96!ZNF438;;chr7:50344289..50344323,+!p1@IKZF1!1.56!35.56!IKZF1;;chr2:145275162..145275202,-!p2@ZEB2!1.55!194.54!ZEB2;;chr2:157189180..157189290,-!p1@NR4A2!1.55!173.86!NR4A2;;chr11:47400045..47400060,-!p6@SPI1!1.54!33.93!SPI1;;chr6:44233252..44233296,-!p1@NFKBIE!1.53!313.08!NFKBIE;;chr14:35872962..35873025,-!p3@NFKBIA!1.53!81.82!NFKBIA;;chr12:52445218..52445237,+!p1@NR4A1!1.52!382.58!NR4A1;;chr2:145277882..145277967,-!p3@ZEB2!1.52!55.09!ZEB2;;chr10:104155659..104155676,+!p4@NFKB2!1.52!39.51!NFKB2;;chr10:64018918..64018936,+!p2@ZNF365!1.52!31.84!ZNF365;;chr21:34442540..34442560,+!p2@OLIG1!1.50!30.68!OLIG1;;chr16:31885093..31885165,+!p1@ZNF267!1.49!434.64!ZNF267;;chr2:68592394..68592405,+!p2@PLEK!1.48!29.05!PLEK;;chr4:103422499..103422632,+!p1@NFKB1!1.47!564.80!NFKB1;;chr10:104155480..104155534,+!p2@NFKB2!1.47!176.88!NFKB2;;chr21:34398234..34398250,+!p1@OLIG2!1.47!28.36!OLIG2;;chr1:212782094..212782109,+!p1@ATF3!1.46!721.23!ATF3;;chr10:104154246..104154347,+!p3@NFKB2!1.46!163.17!NFKB2;;chr19:36391434..36391450,-!p1@NFKBID!1.46!53.23!NFKBID;;chr12:72056773..72056796,+!p3@THAP2!1.46!36.03!THAP2;;chr2:61108695..61108753,+!p1@REL!1.45!179.90!REL;;chr9:102584262..102584276,+!p1@NR4A3!1.45!59.73!NR4A3;;chr7:128577972..128578047,+!p1@IRF5!1.45!41.84!IRF5;;chr6:144385698..144385742,-!p2@PLAGL1!1.45!32.77!PLAGL1;;chr19:45252008..45252024,+!p2@BCL3!1.44!84.84!BCL3;;chrX:129244454..129244488,-!p1@ELF4!1.40!169.67!ELF4;;chr13:41593425..41593480,-!p1@ELF1!1.40!148.29!ELF1;;chr1:38325227..38325246,-!p2@MTF1!1.38!30.91!MTF1;;chr11:47399920..47399931,-!p7@SPI1!1.38!23.24!SPI1;;chr19:42636586..42636607,-!p1@POU2F2!1.37!60.90!POU2F2;;chr9:102584159..102584174,+!p2@NR4A3!1.37!39.51!NR4A3;;chr2:70314240..70314256,+!p4@PCBP1!1.36!44.39!PCBP1;;chr9:102584128..102584144,+!p3@NR4A3!1.36!41.14!NR4A3;;chr3:12330560..12330579,+!p1@PPARG!1.36!24.87!PPARG;;chr11:65430554..65430579,-!p3@RELA!1.35!53.46!RELA;;chrX:153305787..153305807,-!p3@MECP2!1.33!20.22!MECP2;;chr1:37940170..37940190,+!p1@ZC3H12A!1.31!231.73!ZC3H12A;;chr6:15246200..15246214,+!p2@JARID2!1.31!52.30!JARID2;;chr2:28618532..28618610,+!p4@FOSL2!1.31!33.00!FOSL2;;chr22:38597987..38598021,+!p2@MAFF!1.29!111.33!MAFF;;chr6:12012170..12012245,+!p1@HIVEP1!1.29!92.04!HIVEP1;;chr3:12329397..12329433,+!p2@PPARG!1.29!41.60!PPARG;;chr21:36260295..36260310,-!p3@RUNX1!1.29!29.52!RUNX1;;chr2:145277589..145277612,-!p12@ZEB2!1.29!18.59!ZEB2;;chr20:48599506..48599526,+!p1@SNAI1!1.28!113.19!SNAI1;;chr19:50432104..50432126,+!p6@ATF5!1.27!17.43!ATF5;;chr4:106068026..106068084,+!p1@TET2!1.26!152.47!TET2;;chr21:30671235..30671253,+!p1@BACH1!1.25!211.28!BACH1;;chr21:30671690..30671762,+!p2@BACH1!1.25!56.71!BACH1;;chr14:35872926..35872951,-!p4@NFKBIA!1.25!23.71!NFKBIA;;chr20:48807351..48807384,+!p1@CEBPB!1.24!1637.23!CEBPB;;chr12:48298765..48298783,-!p2@VDR!1.24!34.17!VDR;;chr2:70167296..70167306,+!p3@MXD1!1.23!24.17!MXD1;;chr3:101546827..101546847,+!p2@NFKBIZ!1.22!21.85!NFKBIZ;;chr17:38497662..38497713,+!p4@RARA!1.22!18.13!RARA;;chr7:17338266..17338282,+!p1@AHR!1.21!162.24!AHR;;chr1:221052776..221052799,+!p1@HLX!1.21!27.43!HLX;;chr19:45251395..45251432,+!p8@BCL3!1.21!15.11!BCL3;;chr4:103423079..103423112,+!p4@NFKB1!1.21!15.11!NFKB1;;chr2:28615716..28615733,+!p1@FOSL2!1.20!682.41!FOSL2;;chr10:104155455..104155479,+!p1@NFKB2!1.18!201.75!NFKB2;;chr19:45250948..45250998,+!p3@BCL3!1.18!35.79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| ||
|fantom_cat=http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000222;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000234;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000576;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000738;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000763;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000766;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000860;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000988;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0002193;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0002390;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0002405 | |||
|ffid_belonging_in_development=CL:0000049,CL:0000134,CL:0002057 | |||
|fonse_cell_line= | |fonse_cell_line= | ||
|fonse_cell_line_closure= | |fonse_cell_line_closure= | ||
Line 35: | Line 42: | ||
|fonse_treatment_closure=EFO:0000369,FF:0000625,FF:0000630,FF:0011102,FF:11869-125B6 | |fonse_treatment_closure=EFO:0000369,FF:0000625,FF:0000630,FF:0011102,FF:11869-125B6 | ||
|has_quality= | |has_quality= | ||
|hg19bam=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/CD14%252b%2520monocytes%2520-%2520treated%2520with%2520B-glucan%252c%2520donor1.CNhs13474.11869-125B6.hg19.nobarcode.bam | |||
|hg19ctss=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/CD14%252b%2520monocytes%2520-%2520treated%2520with%2520B-glucan%252c%2520donor1.CNhs13474.11869-125B6.hg19.ctss.bed.gz | |||
|hg19fasta=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/CD14%252b%2520monocytes%2520-%2520treated%2520with%2520B-glucan%252c%2520donor1.CNhs13474.11869-125B6.hg19.nobarcode.rdna.fa.gz | |||
|hg38bam=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.primary_cell.hCAGE/CD14%252b%2520monocytes%2520-%2520treated%2520with%2520B-glucan%252c%2520donor1.CNhs13474.11869-125B6.hg38.nobarcode.bam | |||
|hg38ctss=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.primary_cell.hCAGE/CD14%252b%2520monocytes%2520-%2520treated%2520with%2520B-glucan%252c%2520donor1.CNhs13474.11869-125B6.hg38.nobarcode.ctss.bed.gz | |||
|id=FF:11869-125B6 | |id=FF:11869-125B6 | ||
|is_a=EFO:0002091;;FF: | |is_a=EFO:0002091;;FF:0011102 | ||
|is_obsolete= | |||
|library_id=CNhs13474 | |||
|library_id_phase_based=2:CNhs13474 | |||
|microRNAs= | |||
|microRNAs_nn= | |||
|microRNAs_nonnovel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer/#/human#cage;sample;11869 | |||
|microRNAs_novel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer_novel/#/human#cage;sample;11869 | |||
|name=CD14+ monocytes - treated with B-glucan, donor1 | |name=CD14+ monocytes - treated with B-glucan, donor1 | ||
|namespace= | |namespace= | ||
Line 42: | Line 61: | ||
|profile_cagescan=,,, | |profile_cagescan=,,, | ||
|profile_hcage=CNhs13474,LSID1024,release012,COMPLETED | |profile_hcage=CNhs13474,LSID1024,release012,COMPLETED | ||
|profile_rnaseq= | |profile_rnaseq= | ||
|profile_srnaseq=,,, | |profile_srnaseq=,,, | ||
|refex=http://refex.dbcls.jp/genelist.php?lang | |||
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| |||
|rna_box=125 | |rna_box=125 | ||
|rna_catalog_number= | |rna_catalog_number= | ||
Line 57: | Line 79: | ||
|rna_weight_ug=3.408615 | |rna_weight_ug=3.408615 | ||
|sample_age=51 | |sample_age=51 | ||
|sample_category=primary cells | |||
|sample_cell_catalog= | |sample_cell_catalog= | ||
|sample_cell_line= | |sample_cell_line= | ||
Line 69: | Line 92: | ||
|sample_ethnicity= | |sample_ethnicity= | ||
|sample_experimental_condition= | |sample_experimental_condition= | ||
|sample_gostat=GO:0044464;cell part;0!GO:0005622;intracellular;0!GO:0044424;intracellular part;1.41956048438664e-269!GO:0005737;cytoplasm;1.59299231469034e-126!GO:0043227;membrane-bound organelle;2.05099150277952e-120!GO:0043231;intracellular membrane-bound organelle;3.53924739605342e-120!GO:0043226;organelle;1.28429867874106e-111!GO:0043229;intracellular organelle;6.71803642742061e-111!GO:0044444;cytoplasmic part;1.67604309038275e-84!GO:0005515;protein binding;1.11637674527396e-70!GO:0044422;organelle part;1.21232350997113e-69!GO:0044446;intracellular organelle part;4.00800644774405e-68!GO:0044237;cellular metabolic process;2.61565733311398e-65!GO:0044238;primary metabolic process;2.63244468852784e-65!GO:0043170;macromolecule metabolic process;7.52503381216353e-63!GO:0032991;macromolecular complex;7.65156338565707e-59!GO:0003723;RNA binding;4.13357053430672e-52!GO:0030529;ribonucleoprotein complex;3.27992561776508e-49!GO:0005634;nucleus;8.80224310499525e-49!GO:0019538;protein metabolic process;1.72009887705461e-46!GO:0044428;nuclear part;9.10910854313667e-46!GO:0033036;macromolecule localization;1.07206923745714e-43!GO:0015031;protein transport;9.2800949820284e-43!GO:0045184;establishment of protein localization;1.13925767669996e-42!GO:0044267;cellular protein metabolic process;1.80383511487953e-42!GO:0044260;cellular macromolecule metabolic process;3.75835084635548e-42!GO:0008104;protein localization;1.07212070797832e-40!GO:0006412;translation;8.74134213708858e-40!GO:0043233;organelle lumen;1.07084719015422e-37!GO:0031974;membrane-enclosed lumen;1.07084719015422e-37!GO:0005829;cytosol;2.79036604771413e-35!GO:0031090;organelle membrane;4.0363274286096e-34!GO:0043283;biopolymer metabolic process;5.45636911123827e-34!GO:0010467;gene expression;6.73365031500809e-34!GO:0006915;apoptosis;2.21224107098574e-31!GO:0012501;programmed cell death;2.31115569445556e-31!GO:0016071;mRNA metabolic process;9.64143646319914e-31!GO:0043234;protein complex;2.2549237118582e-30!GO:0008219;cell death;5.82230636673933e-30!GO:0016265;death;5.82230636673933e-30!GO:0009059;macromolecule biosynthetic process;5.99749940570514e-30!GO:0006396;RNA processing;8.9145716391715e-30!GO:0031981;nuclear lumen;1.70696036278246e-29!GO:0016043;cellular component organization and biogenesis;2.27973065815119e-28!GO:0046907;intracellular transport;2.97316157017011e-28!GO:0006886;intracellular protein transport;2.99460221934525e-28!GO:0009058;biosynthetic process;8.01767492514157e-28!GO:0044249;cellular biosynthetic process;1.65719191919792e-27!GO:0008380;RNA splicing;2.94825916725402e-27!GO:0005739;mitochondrion;7.15410303141925e-27!GO:0005840;ribosome;1.29437789249257e-26!GO:0006397;mRNA processing;1.99122764293722e-26!GO:0031967;organelle envelope;5.88227640737773e-25!GO:0006139;nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;1.05915798526547e-24!GO:0031975;envelope;1.08610462257755e-24!GO:0003735;structural constituent of ribosome;1.26516997089048e-24!GO:0033279;ribosomal subunit;1.70379300065968e-23!GO:0005830;cytosolic ribosome (sensu Eukaryota);1.8014382695673e-23!GO:0065003;macromolecular complex assembly;7.03224845700419e-23!GO:0044445;cytosolic part;5.51347552272406e-22!GO:0005654;nucleoplasm;8.80515088563764e-22!GO:0051649;establishment of cellular localization;1.91443820689023e-21!GO:0042981;regulation of apoptosis;3.39751156336545e-21!GO:0008134;transcription factor binding;5.43369895980326e-21!GO:0043067;regulation of programmed cell death;6.98212197177208e-21!GO:0051641;cellular localization;7.80395480326874e-21!GO:0016192;vesicle-mediated transport;3.1338334773757e-20!GO:0044429;mitochondrial part;4.31145663922645e-20!GO:0005681;spliceosome;4.77210091988121e-20!GO:0022607;cellular component assembly;5.011675058848e-19!GO:0044451;nucleoplasm part;2.67859255368113e-18!GO:0007243;protein kinase cascade;5.79337519424189e-18!GO:0000166;nucleotide binding;8.45372041067566e-18!GO:0044265;cellular macromolecule catabolic process;3.04668914236251e-17!GO:0006119;oxidative phosphorylation;5.61796459135117e-17!GO:0048770;pigment granule;1.12091035336211e-16!GO:0042470;melanosome;1.12091035336211e-16!GO:0006512;ubiquitin cycle;1.19210155830611e-16!GO:0005740;mitochondrial envelope;2.61063201393553e-16!GO:0022613;ribonucleoprotein complex biogenesis and assembly;3.12629810262673e-16!GO:0005773;vacuole;3.75742167412711e-16!GO:0048523;negative regulation of cellular process;3.91544345351981e-16!GO:0043412;biopolymer modification;5.78070052216026e-16!GO:0031966;mitochondrial membrane;7.27196688034673e-16!GO:0019866;organelle inner membrane;4.66102591855132e-15!GO:0016818;hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides;5.04082608012279e-15!GO:0022618;protein-RNA complex assembly;5.16153591475886e-15!GO:0016462;pyrophosphatase activity;5.41887318348737e-15!GO:0016817;hydrolase activity, acting on acid anhydrides;6.37105500640784e-15!GO:0043285;biopolymer catabolic process;6.46147885618364e-15!GO:0007249;I-kappaB kinase/NF-kappaB cascade;6.740772585454e-15!GO:0006464;protein modification process;6.78488609977257e-15!GO:0007242;intracellular signaling cascade;7.39371008878103e-15!GO:0016070;RNA metabolic process;7.53685759262466e-15!GO:0003676;nucleic acid binding;7.53685759262466e-15!GO:0017111;nucleoside-triphosphatase activity;8.9340005639823e-15!GO:0019941;modification-dependent protein catabolic process;1.1322499992764e-14!GO:0043632;modification-dependent macromolecule catabolic process;1.1322499992764e-14!GO:0050794;regulation of cellular process;1.1495194873559e-14!GO:0006511;ubiquitin-dependent protein catabolic process;1.48414820502862e-14!GO:0051603;proteolysis involved in cellular protein catabolic process;1.48585085745386e-14!GO:0044257;cellular protein catabolic process;1.58831588573302e-14!GO:0000323;lytic vacuole;1.67384875988362e-14!GO:0005764;lysosome;1.67384875988362e-14!GO:0006605;protein targeting;2.44908168753986e-14!GO:0043687;post-translational protein modification;2.62367263827243e-14!GO:0048519;negative regulation of biological process;2.74157347032638e-14!GO:0043069;negative regulation of programmed cell death;3.21805690120341e-14!GO:0043066;negative regulation of apoptosis;3.68533978699929e-14!GO:0002376;immune system process;3.92359468183739e-14!GO:0009057;macromolecule catabolic process;6.44574738612357e-14!GO:0016604;nuclear body;1.29996647733544e-13!GO:0006913;nucleocytoplasmic transport;1.81273251605943e-13!GO:0003712;transcription cofactor activity;2.41502781183242e-13!GO:0006996;organelle organization and biogenesis;2.49657023736945e-13!GO:0051169;nuclear transport;3.49621389406891e-13!GO:0065009;regulation of a molecular function;6.96265118333621e-13!GO:0005794;Golgi apparatus;7.6118872594164e-13!GO:0015934;large ribosomal subunit;7.6118872594164e-13!GO:0043122;regulation of I-kappaB kinase/NF-kappaB cascade;8.03357182974229e-13!GO:0005743;mitochondrial inner membrane;1.08527356334295e-12!GO:0012505;endomembrane system;1.19329918049735e-12!GO:0044248;cellular catabolic process;1.23825302294489e-12!GO:0032553;ribonucleotide binding;1.37945275259911e-12!GO:0032555;purine ribonucleotide binding;1.37945275259911e-12!GO:0005768;endosome;1.6145011710972e-12!GO:0005842;cytosolic large ribosomal subunit (sensu Eukaryota);1.70841389274025e-12!GO:0008135;translation factor activity, nucleic acid binding;1.73737522252768e-12!GO:0000502;proteasome complex (sensu Eukaryota);2.46962729613302e-12!GO:0051246;regulation of protein metabolic process;3.32226599746756e-12!GO:0016607;nuclear speck;3.7274545141414e-12!GO:0006366;transcription from RNA polymerase II promoter;3.97930362218211e-12!GO:0017076;purine nucleotide binding;5.56425220089282e-12!GO:0006793;phosphorus metabolic process;6.50476019561076e-12!GO:0006796;phosphate metabolic process;6.50476019561076e-12!GO:0030163;protein catabolic process;7.70716762142816e-12!GO:0016874;ligase activity;8.39394992313463e-12!GO:0006950;response to stress;9.32133162376291e-12!GO:0050789;regulation of biological process;9.42896266657766e-12!GO:0005843;cytosolic small ribosomal subunit (sensu Eukaryota);1.08432189717605e-11!GO:0015935;small ribosomal subunit;1.21655310910217e-11!GO:0043123;positive regulation of I-kappaB kinase/NF-kappaB cascade;1.35236572404919e-11!GO:0006916;anti-apoptosis;1.617160117244e-11!GO:0006457;protein folding;1.79241233349721e-11!GO:0044455;mitochondrial membrane part;2.59126098983499e-11!GO:0003743;translation initiation factor activity;4.74433266070779e-11!GO:0006955;immune response;5.31623015910193e-11!GO:0016310;phosphorylation;1.766743574116e-10!GO:0006413;translational initiation;1.80703607184013e-10!GO:0006259;DNA metabolic process;1.84557893768046e-10!GO:0048193;Golgi vesicle transport;2.06490203376042e-10!GO:0065007;biological regulation;2.08022519525933e-10!GO:0048522;positive regulation of cellular process;4.04816202857596e-10!GO:0006446;regulation of translational initiation;4.54272608416775e-10!GO:0046961;hydrogen ion transporting ATPase activity, rotational mechanism;5.15836288959029e-10!GO:0051186;cofactor metabolic process;6.05342883121285e-10!GO:0005746;mitochondrial respiratory chain;1.48621154940715e-09!GO:0031324;negative regulation of cellular metabolic process;1.4999298670182e-09!GO:0019829;cation-transporting ATPase activity;1.86135393628315e-09!GO:0048518;positive regulation of biological process;2.00676776561148e-09!GO:0008639;small protein conjugating enzyme activity;2.41727999600684e-09!GO:0051082;unfolded protein binding;2.42648332017274e-09!GO:0046933;hydrogen ion transporting ATP synthase activity, rotational mechanism;2.42648332017274e-09!GO:0050790;regulation of catalytic activity;2.58920249655247e-09!GO:0016787;hydrolase activity;2.73090756287307e-09!GO:0015986;ATP synthesis coupled proton transport;4.02310788256971e-09!GO:0015985;energy coupled proton transport, down electrochemical gradient;4.02310788256971e-09!GO:0019787;small conjugating protein ligase activity;4.02310788256971e-09!GO:0004842;ubiquitin-protein ligase activity;4.07375491186672e-09!GO:0005783;endoplasmic reticulum;5.42983044609158e-09!GO:0006417;regulation of translation;5.46653010233973e-09!GO:0009967;positive regulation of signal transduction;5.54112389611882e-09!GO:0005524;ATP binding;5.83624178201453e-09!GO:0017038;protein import;5.89194887697522e-09!GO:0005635;nuclear envelope;6.97159430663126e-09!GO:0050136;NADH dehydrogenase (quinone) activity;7.12806057000378e-09!GO:0003954;NADH dehydrogenase activity;7.12806057000378e-09!GO:0008137;NADH dehydrogenase (ubiquinone) activity;7.12806057000378e-09!GO:0005770;late endosome;7.13129514525389e-09!GO:0016655;oxidoreductase activity, acting on NADH or NADPH, quinone or similar compound as acceptor;7.81290257282018e-09!GO:0006732;coenzyme metabolic process;7.88843504326861e-09!GO:0016564;transcription repressor activity;8.6213107447985e-09!GO:0000398;nuclear mRNA splicing, via spliceosome;9.31633574159192e-09!GO:0000375;RNA splicing, via transesterification reactions;9.31633574159192e-09!GO:0000377;RNA splicing, via transesterification reactions with bulged adenosine as nucleophile;9.31633574159192e-09!GO:0032559;adenyl ribonucleotide binding;9.85008990752413e-09!GO:0051170;nuclear import;1.33854808043382e-08!GO:0019899;enzyme binding;2.11197292546541e-08!GO:0043065;positive regulation of apoptosis;2.22807746139764e-08!GO:0009056;catabolic process;2.28366248520094e-08!GO:0009152;purine ribonucleotide biosynthetic process;3.02251527835592e-08!GO:0043068;positive regulation of programmed cell death;3.05251623643327e-08!GO:0009150;purine ribonucleotide metabolic process;3.07027922531905e-08!GO:0048468;cell development;3.07763834404017e-08!GO:0006606;protein import into nucleus;3.07763834404017e-08!GO:0009615;response to virus;3.10079302029599e-08!GO:0005730;nucleolus;3.21980167697211e-08!GO:0030554;adenyl nucleotide binding;3.86538718452736e-08!GO:0019222;regulation of metabolic process;3.89759752739866e-08!GO:0006163;purine nucleotide metabolic process;5.26244387856689e-08!GO:0006754;ATP biosynthetic process;5.26244387856689e-08!GO:0006753;nucleoside phosphate metabolic process;5.26244387856689e-08!GO:0009892;negative regulation of metabolic process;5.53434717055584e-08!GO:0006164;purine nucleotide biosynthetic process;5.83295009958781e-08!GO:0009889;regulation of biosynthetic process;5.83497407583045e-08!GO:0005774;vacuolar membrane;6.01537530577106e-08!GO:0008047;enzyme activator activity;6.0488472141027e-08!GO:0009259;ribonucleotide metabolic process;6.36697968831324e-08!GO:0016469;proton-transporting two-sector ATPase complex;7.72641195181291e-08!GO:0003713;transcription coactivator activity;8.50563997251411e-08!GO:0006461;protein complex assembly;9.2201107150998e-08!GO:0007049;cell cycle;9.74785689938534e-08!GO:0015078;hydrogen ion transmembrane transporter activity;9.81129292704148e-08!GO:0009607;response to biotic stimulus;1.07729209277864e-07!GO:0031326;regulation of cellular biosynthetic process;1.08034835787126e-07!GO:0016651;oxidoreductase activity, acting on NADH or NADPH;1.50184625375114e-07!GO:0045934;negative regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;1.50184625375114e-07!GO:0051726;regulation of cell cycle;1.5325462021172e-07!GO:0009260;ribonucleotide biosynthetic process;1.5325462021172e-07!GO:0042775;organelle ATP synthesis coupled electron transport;1.5640882320884e-07!GO:0042773;ATP synthesis coupled electron transport;1.5640882320884e-07!GO:0008565;protein transporter activity;1.66454958649626e-07!GO:0016881;acid-amino acid ligase activity;1.82557738679135e-07!GO:0016044;membrane organization and biogenesis;1.92636525007179e-07!GO:0016887;ATPase activity;1.92636525007179e-07!GO:0030964;NADH dehydrogenase complex (quinone);1.92923163983596e-07!GO:0045271;respiratory chain complex I;1.92923163983596e-07!GO:0005747;mitochondrial respiratory chain complex I;1.92923163983596e-07!GO:0044432;endoplasmic reticulum part;1.97163356770771e-07!GO:0000074;regulation of progression through cell cycle;1.97543671845016e-07!GO:0016481;negative regulation of transcription;2.05058241075118e-07!GO:0009055;electron carrier activity;2.20491040904171e-07!GO:0045786;negative regulation of progression through cell cycle;2.37260133140382e-07!GO:0046034;ATP metabolic process;2.43226232857628e-07!GO:0006917;induction of apoptosis;2.44710702517255e-07!GO:0042623;ATPase activity, coupled;2.5403833482847e-07!GO:0003924;GTPase activity;2.64229090369553e-07!GO:0031965;nuclear membrane;2.72246496441861e-07!GO:0007264;small GTPase mediated signal transduction;3.04572823404374e-07!GO:0044437;vacuolar part;3.04572823404374e-07!GO:0009206;purine ribonucleoside triphosphate biosynthetic process;3.37360204933624e-07!GO:0009145;purine nucleoside triphosphate biosynthetic process;3.37360204933624e-07!GO:0016879;ligase activity, forming carbon-nitrogen bonds;3.42945208056928e-07!GO:0044453;nuclear membrane part;3.59117352975015e-07!GO:0006325;establishment and/or maintenance of chromatin architecture;3.97207418379338e-07!GO:0012502;induction of programmed cell death;3.97207418379338e-07!GO:0006120;mitochondrial electron transport, NADH to ubiquinone;4.10854168515984e-07!GO:0044440;endosomal part;4.28738539821954e-07!GO:0010008;endosome membrane;4.28738539821954e-07!GO:0005765;lysosomal membrane;4.44582308613659e-07!GO:0009142;nucleoside triphosphate biosynthetic process;4.56900519297257e-07!GO:0009201;ribonucleoside triphosphate biosynthetic process;4.56900519297257e-07!GO:0043228;non-membrane-bound organelle;6.16954845048376e-07!GO:0043232;intracellular non-membrane-bound organelle;6.16954845048376e-07!GO:0031982;vesicle;7.06668402856961e-07!GO:0032446;protein modification by small protein conjugation;7.07074223764129e-07!GO:0009205;purine ribonucleoside triphosphate metabolic process;7.39075408920356e-07!GO:0009144;purine nucleoside triphosphate metabolic process;7.39075408920356e-07!GO:0005793;ER-Golgi intermediate compartment;7.41239550275453e-07!GO:0016568;chromatin modification;7.825857405608e-07!GO:0009199;ribonucleoside triphosphate metabolic process;9.53292248588066e-07!GO:0051188;cofactor biosynthetic process;1.14345137991948e-06!GO:0006323;DNA packaging;1.14345137991948e-06!GO:0005525;GTP binding;1.25892882872359e-06!GO:0016567;protein ubiquitination;1.37446881492307e-06!GO:0016563;transcription activator activity;1.75448028274716e-06!GO:0003714;transcription corepressor activity;2.04870801280994e-06!GO:0009108;coenzyme biosynthetic process;2.33014688081858e-06!GO:0042625;ATPase activity, coupled to transmembrane movement of ions;2.49741883969228e-06!GO:0009141;nucleoside triphosphate metabolic process;2.50178385773942e-06!GO:0050657;nucleic acid transport;2.8425597200174e-06!GO:0051236;establishment of RNA localization;2.8425597200174e-06!GO:0050658;RNA transport;2.8425597200174e-06!GO:0009966;regulation of signal transduction;3.11375857409016e-06!GO:0015077;monovalent inorganic cation transmembrane transporter activity;3.31136154248327e-06!GO:0048475;coated membrane;3.53369348788263e-06!GO:0030117;membrane coat;3.53369348788263e-06!GO:0006403;RNA localization;3.67106589492524e-06!GO:0006752;group transfer coenzyme metabolic process;3.80808994025712e-06!GO:0006888;ER to Golgi vesicle-mediated transport;3.81193884198945e-06!GO:0031410;cytoplasmic vesicle;4.31005434202102e-06!GO:0031323;regulation of cellular metabolic process;4.36287222198827e-06!GO:0005839;proteasome core complex (sensu Eukaryota);4.56551625979086e-06!GO:0006897;endocytosis;4.6927596383421e-06!GO:0010324;membrane invagination;4.6927596383421e-06!GO:0042175;nuclear envelope-endoplasmic reticulum network;4.92601910779888e-06!GO:0005789;endoplasmic reticulum membrane;5.16954778953011e-06!GO:0005643;nuclear pore;7.25877907635134e-06!GO:0030120;vesicle coat;7.64904506178594e-06!GO:0030662;coated vesicle membrane;7.64904506178594e-06!GO:0016591;DNA-directed RNA polymerase II, holoenzyme;8.03083806529704e-06!GO:0031980;mitochondrial lumen;8.15429116537987e-06!GO:0005759;mitochondrial matrix;8.15429116537987e-06!GO:0006357;regulation of transcription from RNA polymerase II promoter;8.99038423493358e-06!GO:0031988;membrane-bound vesicle;9.36348075312466e-06!GO:0015405;P-P-bond-hydrolysis-driven transmembrane transporter activity;9.36949724973822e-06!GO:0015399;primary active transmembrane transporter activity;9.36949724973822e-06!GO:0016197;endosome transport;1.28229171664759e-05!GO:0005769;early endosome;1.42037905243042e-05!GO:0031252;leading edge;1.58113970595821e-05!GO:0032561;guanyl ribonucleotide binding;2.1156574413288e-05!GO:0019001;guanyl nucleotide binding;2.1156574413288e-05!GO:0031902;late endosome membrane;2.2973783107146e-05!GO:0016772;transferase activity, transferring phosphorus-containing groups;2.33128007756499e-05!GO:0001816;cytokine production;2.4527566557065e-05!GO:0008026;ATP-dependent helicase activity;2.5923130981152e-05!GO:0004298;threonine endopeptidase activity;2.64417870775092e-05!GO:0006974;response to DNA damage stimulus;2.70506798804631e-05!GO:0016023;cytoplasmic membrane-bound vesicle;2.84501422539967e-05!GO:0051336;regulation of hydrolase activity;2.97415047394253e-05!GO:0008632;apoptotic program;2.97735416942662e-05!GO:0051028;mRNA transport;3.30466072496541e-05!GO:0009893;positive regulation of metabolic process;4.24868133815484e-05!GO:0004386;helicase activity;4.91206510747708e-05!GO:0030695;GTPase regulator activity;5.20213952284217e-05!GO:0030099;myeloid cell differentiation;5.20213952284217e-05!GO:0015931;nucleobase, nucleoside, nucleotide and nucleic acid transport;5.70754545932913e-05!GO:0046822;regulation of nucleocytoplasmic transport;5.81723651059739e-05!GO:0005096;GTPase activator activity;5.93519757279049e-05!GO:0006401;RNA catabolic process;6.19086143566227e-05!GO:0006954;inflammatory response;6.44891253150119e-05!GO:0010468;regulation of gene expression;6.456003858275e-05!GO:0046930;pore complex;6.66236700192418e-05!GO:0045259;proton-transporting ATP synthase complex;7.02612337785708e-05!GO:0055086;nucleobase, nucleoside and nucleotide metabolic process;7.13473963499225e-05!GO:0051276;chromosome organization and biogenesis;7.36483489762888e-05!GO:0051168;nuclear export;7.52668807985095e-05!GO:0043566;structure-specific DNA binding;7.71482026120256e-05!GO:0022402;cell cycle process;8.58641878256213e-05!GO:0051338;regulation of transferase activity;8.58641878256213e-05!GO:0009060;aerobic respiration;9.72967985248833e-05!GO:0000151;ubiquitin ligase complex;9.99491223523913e-05!GO:0032940;secretion by cell;0.000105204292737927!GO:0043492;ATPase activity, coupled to movement of substances;0.000106740349046294!GO:0003724;RNA helicase activity;0.000108581821624526!GO:0042626;ATPase activity, coupled to transmembrane movement of substances;0.000114808830531101!GO:0044431;Golgi apparatus part;0.000118108786066944!GO:0005798;Golgi-associated vesicle;0.000129517035570175!GO:0004674;protein serine/threonine kinase activity;0.000132899283843863!GO:0045935;positive regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;0.000138144255288797!GO:0006613;cotranslational protein targeting to membrane;0.000138238985901677!GO:0046519;sphingoid metabolic process;0.000154217873756514!GO:0016820;hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances;0.000157137933579388!GO:0006818;hydrogen transport;0.000165043350665245!GO:0030036;actin cytoskeleton organization and biogenesis;0.00019133414184015!GO:0043549;regulation of kinase activity;0.00019792500864269!GO:0051789;response to protein stimulus;0.00020913902280197!GO:0006986;response to unfolded protein;0.00020913902280197!GO:0001726;ruffle;0.000215860929626686!GO:0005885;Arp2/3 protein complex;0.000225009158568043!GO:0051427;hormone receptor binding;0.00022506976035621!GO:0015992;proton transport;0.000233516997777994!GO:0005057;receptor signaling protein activity;0.000236016142593608!GO:0043085;positive regulation of catalytic activity;0.000241609075573468!GO:0003697;single-stranded DNA binding;0.000245760230237681!GO:0006672;ceramide metabolic process;0.000270134341510154!GO:0007050;cell cycle arrest;0.000273334822039717!GO:0051223;regulation of protein transport;0.000277430259971747!GO:0031202;RNA splicing factor activity, transesterification mechanism;0.000281079074698212!GO:0051707;response to other organism;0.000287649332376779!GO:0000245;spliceosome assembly;0.000307740911192215!GO:0045859;regulation of protein kinase activity;0.000321507956222796!GO:0022890;inorganic cation transmembrane transporter activity;0.000337730854252489!GO:0045333;cellular respiration;0.000348870190767825!GO:0008234;cysteine-type peptidase activity;0.000351616926768923!GO:0045892;negative regulation of transcription, DNA-dependent;0.000351616926768923!GO:0030532;small nuclear ribonucleoprotein complex;0.000354239630619192!GO:0006281;DNA repair;0.000361980779640954!GO:0035257;nuclear hormone receptor binding;0.000370809933955516!GO:0065002;intracellular protein transport across a membrane;0.000370809933955516!GO:0030097;hemopoiesis;0.000378844348196256!GO:0045941;positive regulation of transcription;0.000400031010285733!GO:0005852;eukaryotic translation initiation factor 3 complex;0.00040575867110946!GO:0007034;vacuolar transport;0.00043666948284146!GO:0006402;mRNA catabolic process;0.000474015210339936!GO:0006952;defense response;0.000479657680580877!GO:0033157;regulation of intracellular protein transport;0.000489598408257593!GO:0042306;regulation of protein import into nucleus;0.000489598408257593!GO:0007040;lysosome organization and biogenesis;0.00051129530229581!GO:0065004;protein-DNA complex assembly;0.000554349059670882!GO:0008654;phospholipid biosynthetic process;0.000561523142886583!GO:0005083;small GTPase regulator activity;0.000587045725055656!GO:0006350;transcription;0.000610682513831945!GO:0031325;positive regulation of cellular metabolic process;0.000625934360752514!GO:0043281;regulation of caspase activity;0.000634462803089939!GO:0009117;nucleotide metabolic process;0.000640829950701353!GO:0007005;mitochondrion organization and biogenesis;0.000642257333229495!GO:0006643;membrane lipid metabolic process;0.000657696156124295!GO:0006919;caspase activation;0.000674012421542317!GO:0030530;heterogeneous nuclear ribonucleoprotein complex;0.00070447797637436!GO:0007041;lysosomal transport;0.000722446266495285!GO:0002757;immune response-activating signal transduction;0.000728743604429121!GO:0046983;protein dimerization activity;0.000746252920788009!GO:0045321;leukocyte activation;0.000760994637504943!GO:0003729;mRNA binding;0.000786996861525291!GO:0016281;eukaryotic translation initiation factor 4F complex;0.000823387045411294!GO:0043280;positive regulation of caspase activity;0.000831733913731493!GO:0016740;transferase activity;0.000831733913731493!GO:0005667;transcription factor complex;0.000896532246848478!GO:0051090;regulation of transcription factor activity;0.000904853254249024!GO:0045893;positive regulation of transcription, DNA-dependent;0.000909844858421056!GO:0005761;mitochondrial ribosome;0.000909844858421056!GO:0000313;organellar ribosome;0.000909844858421056!GO:0007265;Ras protein signal transduction;0.000919905407109453!GO:0042254;ribosome biogenesis and assembly;0.000919917680684679!GO:0019221;cytokine and chemokine mediated signaling pathway;0.00096532512079031!GO:0008186;RNA-dependent ATPase activity;0.00100454722365682!GO:0007033;vacuole organization and biogenesis;0.00101996095817177!GO:0002764;immune response-regulating signal transduction;0.0010546275951082!GO:0033178;proton-transporting two-sector ATPase complex, catalytic domain;0.00108662441014322!GO:0060090;molecular adaptor activity;0.00111902401054336!GO:0033116;ER-Golgi intermediate compartment membrane;0.00130252378350486!GO:0002474;antigen processing and presentation of peptide antigen via MHC class I;0.00134034008700366!GO:0042990;regulation of transcription factor import into nucleus;0.00139580086623061!GO:0042991;transcription factor import into nucleus;0.00139580086623061!GO:0009719;response to endogenous stimulus;0.0014526750174493!GO:0043623;cellular protein complex assembly;0.00150943455732634!GO:0030029;actin filament-based process;0.00152117457474627!GO:0045637;regulation of myeloid cell differentiation;0.00153399792918838!GO:0006612;protein targeting to membrane;0.00158511518947428!GO:0045454;cell redox homeostasis;0.00162572457393078!GO:0022415;viral reproductive process;0.00165694085275195!GO:0002274;myeloid leukocyte activation;0.00169987205259779!GO:0008383;manganese superoxide dismutase activity;0.00191095426622495!GO:0001315;age-dependent response to reactive oxygen species;0.00191095426622495!GO:0000139;Golgi membrane;0.00201099890285046!GO:0016773;phosphotransferase activity, alcohol group as acceptor;0.00208920000019133!GO:0044262;cellular carbohydrate metabolic process;0.00211518447631063!GO:0019219;regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;0.00213492062169284!GO:0004437;inositol or phosphatidylinositol phosphatase activity;0.00214796965022625!GO:0005741;mitochondrial outer membrane;0.00226638832004071!GO:0030218;erythrocyte differentiation;0.00251588914010337!GO:0042110;T cell activation;0.00258670681111619!GO:0005637;nuclear inner membrane;0.00261819720463859!GO:0004004;ATP-dependent RNA helicase activity;0.00277420917420279!GO:0001817;regulation of cytokine production;0.0027853598339993!GO:0030149;sphingolipid catabolic process;0.00284244979562547!GO:0000122;negative regulation of transcription from RNA polymerase II promoter;0.0028703100714736!GO:0045261;proton-transporting ATP synthase complex, catalytic core F(1);0.00290308933330294!GO:0030658;transport vesicle membrane;0.00294737943470892!GO:0007259;JAK-STAT cascade;0.00296637050078201!GO:0045045;secretory pathway;0.00307181394925476!GO:0006099;tricarboxylic acid cycle;0.00308747199452289!GO:0046356;acetyl-CoA catabolic process;0.00308747199452289!GO:0016301;kinase activity;0.00317490086782208!GO:0019904;protein domain specific binding;0.00341614949544012!GO:0002429;immune response-activating cell surface receptor signaling pathway;0.00344093190858965!GO:0048487;beta-tubulin binding;0.00345238932245995!GO:0016251;general RNA polymerase II transcription factor activity;0.00351450725049211!GO:0006891;intra-Golgi vesicle-mediated transport;0.00367540343808994!GO:0046966;thyroid hormone receptor binding;0.00385892522189816!GO:0009165;nucleotide biosynthetic process;0.00389581658906312!GO:0006091;generation of precursor metabolites and energy;0.00413214323728465!GO:0043087;regulation of GTPase activity;0.00417005424071892!GO:0018193;peptidyl-amino acid modification;0.00419266877373012!GO:0005753;mitochondrial proton-transporting ATP synthase complex;0.00425402239636157!GO:0006352;transcription initiation;0.0043110746012701!GO:0051187;cofactor catabolic process;0.00441173145936571!GO:0002768;immune response-regulating cell surface receptor signaling pathway;0.00481278402638715!GO:0016679;oxidoreductase activity, acting on diphenols and related substances as donors;0.00484914755277513!GO:0016681;oxidoreductase activity, acting on diphenols and related substances as donors, cytochrome as acceptor;0.00484914755277513!GO:0008121;ubiquinol-cytochrome-c reductase activity;0.00484914755277513!GO:0051345;positive regulation of hydrolase activity;0.00502887035812198!GO:0009611;response to wounding;0.00502887035812198!GO:0019377;glycolipid catabolic process;0.00505357968068522!GO:0006333;chromatin assembly or disassembly;0.00505452285346277!GO:0031901;early endosome membrane;0.00510063484364365!GO:0031072;heat shock protein binding;0.00520202392776167!GO:0042802;identical protein binding;0.00520202392776167!GO:0032386;regulation of intracellular transport;0.00551707986311115!GO:0004185;serine carboxypeptidase activity;0.00576958838875515!GO:0016876;ligase activity, forming aminoacyl-tRNA and related compounds;0.00584125875325351!GO:0004812;aminoacyl-tRNA ligase activity;0.00584125875325351!GO:0016875;ligase activity, forming carbon-oxygen bonds;0.00584125875325351!GO:0030660;Golgi-associated vesicle membrane;0.00596709942438102!GO:0002520;immune system development;0.00618233328791566!GO:0030118;clathrin coat;0.00628885215084908!GO:0043021;ribonucleoprotein binding;0.00642354819870744!GO:0048471;perinuclear region of cytoplasm;0.00645197066519956!GO:0048534;hemopoietic or lymphoid organ development;0.00647376848918523!GO:0006399;tRNA metabolic process;0.00651554087579889!GO:0033367;protein localization in mast cell secretory granule;0.00651554087579889!GO:0033365;protein localization in organelle;0.00651554087579889!GO:0033371;T cell secretory granule organization and biogenesis;0.00651554087579889!GO:0033373;maintenance of protease localization in mast cell secretory granule;0.00651554087579889!GO:0033375;protease localization in T cell secretory granule;0.00651554087579889!GO:0042629;mast cell granule;0.00651554087579889!GO:0033377;maintenance of protein localization in T cell secretory granule;0.00651554087579889!GO:0033364;mast cell secretory granule organization and biogenesis;0.00651554087579889!GO:0033380;granzyme B localization in T cell secretory granule;0.00651554087579889!GO:0033379;maintenance of protease localization in T cell secretory granule;0.00651554087579889!GO:0033370;maintenance of protein localization in mast cell secretory granule;0.00651554087579889!GO:0033368;protease localization in mast cell secretory granule;0.00651554087579889!GO:0033366;protein localization in secretory granule;0.00651554087579889!GO:0033382;maintenance of granzyme B localization in T cell secretory granule;0.00651554087579889!GO:0033374;protein localization in T cell secretory granule;0.00651554087579889!GO:0030041;actin filament polymerization;0.00668846548775204!GO:0019867;outer membrane;0.00676912885830233!GO:0004197;cysteine-type endopeptidase activity;0.00716717341178202!GO:0001775;cell activation;0.0071732759673765!GO:0005099;Ras GTPase activator activity;0.00729994281401446!GO:0030134;ER to Golgi transport vesicle;0.00753740875122786!GO:0016791;phosphoric monoester hydrolase activity;0.00765314860845209!GO:0031968;organelle outer membrane;0.00765314860845209!GO:0006611;protein export from nucleus;0.00797811447734074!GO:0006084;acetyl-CoA metabolic process;0.00801655396903806!GO:0006458;'de novo' protein folding;0.00822681063707124!GO:0051084;'de novo' posttranslational protein folding;0.00822681063707124!GO:0005070;SH3/SH2 adaptor activity;0.00822681063707124!GO:0043433;negative regulation of transcription factor activity;0.00826876930227644!GO:0016779;nucleotidyltransferase activity;0.00826876930227644!GO:0031625;ubiquitin protein ligase binding;0.00827250201505475!GO:0003690;double-stranded DNA binding;0.00860518616995397!GO:0030127;COPII vesicle coat;0.00860518616995397!GO:0012507;ER to Golgi transport vesicle membrane;0.00860518616995397!GO:0043038;amino acid activation;0.00860518616995397!GO:0006418;tRNA aminoacylation for protein translation;0.00860518616995397!GO:0043039;tRNA aminoacylation;0.00860518616995397!GO:0051252;regulation of RNA metabolic process;0.00876592482141839!GO:0006607;NLS-bearing substrate import into nucleus;0.0088813836412687!GO:0005813;centrosome;0.00888732792017601!GO:0030133;transport vesicle;0.00893248851567854!GO:0005484;SNAP receptor activity;0.0093290752075933!GO:0046649;lymphocyte activation;0.0094918062369669!GO:0002237;response to molecule of bacterial origin;0.00961854989275818!GO:0006468;protein amino acid phosphorylation;0.0101485006425972!GO:0002521;leukocyte differentiation;0.0105754997585766!GO:0009109;coenzyme catabolic process;0.0105754997585766!GO:0005838;proteasome regulatory particle (sensu Eukaryota);0.0105928346911254!GO:0002504;antigen processing and presentation of peptide or polysaccharide antigen via MHC class II;0.0106263242717086!GO:0046479;glycosphingolipid catabolic process;0.0107414930336296!GO:0043621;protein self-association;0.0110302303484185!GO:0045449;regulation of transcription;0.0118280803924443!GO:0016363;nuclear matrix;0.0118748932200683!GO:0051092;activation of NF-kappaB transcription factor;0.0120929148134315!GO:0045646;regulation of erythrocyte differentiation;0.0125838475101286!GO:0008139;nuclear localization sequence binding;0.0127596070809415!GO:0005048;signal sequence binding;0.0128575340392216!GO:0016072;rRNA metabolic process;0.0135011922068318!GO:0019882;antigen processing and presentation;0.0136154711593864!GO:0000082;G1/S transition of mitotic cell cycle;0.0138607213672713!GO:0050851;antigen receptor-mediated signaling pathway;0.0139901363932377!GO:0046467;membrane lipid biosynthetic process;0.0139901363932377!GO:0006650;glycerophospholipid metabolic process;0.014238151349449!GO:0032763;regulation of mast cell cytokine production;0.0146262279436255!GO:0032762;mast cell cytokine production;0.0146262279436255!GO:0008624;induction of apoptosis by extracellular signals;0.0149048179823428!GO:0000785;chromatin;0.0149791262675386!GO:0019079;viral genome replication;0.0150791716940197!GO:0030176;integral to endoplasmic reticulum membrane;0.0154064528828234!GO:0000209;protein polyubiquitination;0.0154064528828234!GO:0008637;apoptotic mitochondrial changes;0.0154340250557093!GO:0006665;sphingolipid metabolic process;0.015509496135223!GO:0030258;lipid modification;0.0156117823323934!GO:0002822;regulation of adaptive immune response based on somatic recombination of immune receptors built from immunoglobulin superfamily domains.;0.0156117823323934!GO:0002819;regulation of adaptive immune response;0.0156117823323934!GO:0001819;positive regulation of cytokine production;0.0157679107947158!GO:0006351;transcription, DNA-dependent;0.0161157832773172!GO:0006364;rRNA processing;0.0165645271149458!GO:0003702;RNA polymerase II transcription factor activity;0.0166162175318414!GO:0032774;RNA biosynthetic process;0.0169112713374977!GO:0051059;NF-kappaB binding;0.0171460709807006!GO:0045792;negative regulation of cell size;0.0171552896255838!GO:0030518;steroid hormone receptor signaling pathway;0.0176030879426186!GO:0006368;RNA elongation from RNA polymerase II promoter;0.0176913320890132!GO:0005815;microtubule organizing center;0.0177979935852178!GO:0030521;androgen receptor signaling pathway;0.0177979935852178!GO:0048500;signal recognition particle;0.0178465412564971!GO:0002467;germinal center formation;0.0178718014537353!GO:0030503;regulation of cell redox homeostasis;0.0179797751772763!GO:0046466;membrane lipid catabolic process;0.0182378611903093!GO:0050811;GABA receptor binding;0.0183101761706874!GO:0006354;RNA elongation;0.0184855109310288!GO:0051098;regulation of binding;0.0185588528841935!GO:0019220;regulation of phosphate metabolic process;0.0191381889696883!GO:0051174;regulation of phosphorus metabolic process;0.0191381889696883!GO:0006749;glutathione metabolic process;0.01934224170666!GO:0033673;negative regulation of kinase activity;0.0196924557729881!GO:0006469;negative regulation of protein kinase activity;0.0196924557729881!GO:0019883;antigen processing and presentation of endogenous antigen;0.019914236720341!GO:0006367;transcription initiation from RNA polymerase II promoter;0.0201358271559199!GO:0030100;regulation of endocytosis;0.0201907263190474!GO:0002444;myeloid leukocyte mediated immunity;0.0202095035755099!GO:0005905;coated pit;0.0205756883460399!GO:0006644;phospholipid metabolic process;0.0208325111861861!GO:0002252;immune effector process;0.0209287370926533!GO:0030308;negative regulation of cell growth;0.0210233125557577!GO:0051247;positive regulation of protein metabolic process;0.0211249818305376!GO:0015631;tubulin binding;0.0212066507550832!GO:0004177;aminopeptidase activity;0.0217317128470665!GO:0043022;ribosome binding;0.0218624516738558!GO:0008361;regulation of cell size;0.0224801034586714!GO:0042613;MHC class II protein complex;0.0225407977003802!GO:0000165;MAPKKK cascade;0.0230224438429767!GO:0006914;autophagy;0.0230544206946229!GO:0032318;regulation of Ras GTPase activity;0.0231272556010886!GO:0002763;positive regulation of myeloid leukocyte differentiation;0.0231272556010886!GO:0000287;magnesium ion binding;0.0235145314808713!GO:0051348;negative regulation of transferase activity;0.0235265659367175!GO:0030867;rough endoplasmic reticulum membrane;0.0237522651207497!GO:0042348;NF-kappaB import into nucleus;0.023845808278209!GO:0042345;regulation of NF-kappaB import into nucleus;0.023845808278209!GO:0051085;chaperone cofactor-dependent protein folding;0.0238607156162543!GO:0050900;leukocyte migration;0.0239770128208608!GO:0017166;vinculin binding;0.024237016076105!GO:0045639;positive regulation of myeloid cell differentiation;0.0243367823324776!GO:0019901;protein kinase binding;0.0243676363016701!GO:0002224;toll-like receptor signaling pathway;0.0244372966386351!GO:0002221;pattern recognition receptor signaling pathway;0.0244372966386351!GO:0030663;COPI coated vesicle membrane;0.0244439299106061!GO:0030126;COPI vesicle coat;0.0244439299106061!GO:0004860;protein kinase inhibitor activity;0.02458412343113!GO:0051091;positive regulation of transcription factor activity;0.0246964126232916!GO:0000339;RNA cap binding;0.0249478682147429!GO:0030119;AP-type membrane coat adaptor complex;0.0251204981250696!GO:0051347;positive regulation of transferase activity;0.0251204981250696!GO:0015923;mannosidase activity;0.0251221223562856!GO:0002440;production of molecular mediator of immune response;0.025196744616077!GO:0030137;COPI-coated vesicle;0.0252988738279152!GO:0051049;regulation of transport;0.0253195437938244!GO:0043488;regulation of mRNA stability;0.0254889513248011!GO:0043487;regulation of RNA stability;0.0254889513248011!GO:0006405;RNA export from nucleus;0.0255910968890994!GO:0019843;rRNA binding;0.0256564087636232!GO:0045263;proton-transporting ATP synthase complex, coupling factor F(o);0.0260697754571654!GO:0033177;proton-transporting two-sector ATPase complex, proton-transporting domain;0.0260697754571654!GO:0048002;antigen processing and presentation of peptide antigen;0.0260697754571654!GO:0019318;hexose metabolic process;0.02660273735246!GO:0003725;double-stranded RNA binding;0.02660273735246!GO:0004702;receptor signaling protein serine/threonine kinase activity;0.027305304454313!GO:0006614;SRP-dependent cotranslational protein targeting to membrane;0.0274025659565544!GO:0045047;protein targeting to ER;0.0274025659565544!GO:0017091;AU-rich element binding;0.0274982419003104!GO:0050779;RNA destabilization;0.0274982419003104!GO:0000289;poly(A) tail shortening;0.0274982419003104!GO:0030384;phosphoinositide metabolic process;0.027588109183404!GO:0043300;regulation of leukocyte degranulation;0.0280909655566111!GO:0044255;cellular lipid metabolic process;0.0281009331840641!GO:0016311;dephosphorylation;0.0281271842955411!GO:0015036;disulfide oxidoreductase activity;0.0281271842955411!GO:0002250;adaptive immune response;0.0291052485799659!GO:0002460;adaptive immune response based on somatic recombination of immune receptors built from immunoglobulin superfamily domains;0.0291052485799659!GO:0004722;protein serine/threonine phosphatase activity;0.0291413927373777!GO:0035035;histone acetyltransferase binding;0.0298552599444233!GO:0008286;insulin receptor signaling pathway;0.0300576910740792!GO:0031327;negative regulation of cellular biosynthetic process;0.0302002387734268!GO:0033033;negative regulation of myeloid cell apoptosis;0.0302002387734268!GO:0001803;regulation of type III hypersensitivity;0.0302002387734268!GO:0032733;positive regulation of interleukin-10 production;0.0302002387734268!GO:0033025;regulation of mast cell apoptosis;0.0302002387734268!GO:0001805;positive regulation of type III hypersensitivity;0.0302002387734268!GO:0033023;mast cell homeostasis;0.0302002387734268!GO:0002431;Fc receptor mediated stimulatory signaling pathway;0.0302002387734268!GO:0033032;regulation of myeloid cell apoptosis;0.0302002387734268!GO:0001802;type III hypersensitivity;0.0302002387734268!GO:0033028;myeloid cell apoptosis;0.0302002387734268!GO:0042590;antigen processing and presentation of exogenous peptide antigen via MHC class I;0.0302002387734268!GO:0033026;negative regulation of mast cell apoptosis;0.0302002387734268!GO:0033024;mast cell apoptosis;0.0302002387734268!GO:0005869;dynactin complex;0.0302748106898839!GO:0006414;translational elongation;0.0310788283711398!GO:0003746;translation elongation factor activity;0.0312347261603185!GO:0008287;protein serine/threonine phosphatase complex;0.0312844880605808!GO:0030027;lamellipodium;0.0313315391032862!GO:0006689;ganglioside catabolic process;0.0313626464504979!GO:0005996;monosaccharide metabolic process;0.0314346655677483!GO:0032760;positive regulation of tumor necrosis factor production;0.0319589258499298!GO:0051101;regulation of DNA binding;0.0319718083537336!GO:0042221;response to chemical stimulus;0.0321923425867559!GO:0045576;mast cell activation;0.0323228801941238!GO:0051235;maintenance of localization;0.0326668443602263!GO:0005665;DNA-directed RNA polymerase II, core complex;0.0328437465846373!GO:0006516;glycoprotein catabolic process;0.0335518367961318!GO:0002718;regulation of cytokine production during immune response;0.0337502603274587!GO:0002367;cytokine production during immune response;0.0337502603274587!GO:0002700;regulation of production of molecular mediator of immune response;0.0337502603274587!GO:0005669;transcription factor TFIID complex;0.0338251569721303!GO:0005694;chromosome;0.0338701423778525!GO:0045113;regulation of integrin biosynthetic process;0.0349977624185769!GO:0045112;integrin biosynthetic process;0.0349977624185769!GO:0016667;oxidoreductase activity, acting on sulfur group of donors;0.0355533159550406!GO:0030131;clathrin adaptor complex;0.035925428957305!GO:0000118;histone deacetylase complex;0.0364914098023328!GO:0008312;7S RNA binding;0.0366557648728415!GO:0006509;membrane protein ectodomain proteolysis;0.0367955707962679!GO:0033619;membrane protein proteolysis;0.0367955707962679!GO:0008656;caspase activator activity;0.0368892136815124!GO:0042611;MHC protein complex;0.0372814213644711!GO:0005149;interleukin-1 receptor binding;0.0376101744062195!GO:0008625;induction of apoptosis via death domain receptors;0.0391411211602333!GO:0019210;kinase inhibitor activity;0.0393442178873633!GO:0030433;ER-associated protein catabolic process;0.0395555793171113!GO:0006515;misfolded or incompletely synthesized protein catabolic process;0.0395555793171113!GO:0045746;negative regulation of Notch signaling pathway;0.0400301204134049!GO:0045309;protein phosphorylated amino acid binding;0.0402113421394893!GO:0005788;endoplasmic reticulum lumen;0.0402113421394893!GO:0007162;negative regulation of cell adhesion;0.040265217679182!GO:0019058;viral infectious cycle;0.0405308630637168!GO:0051329;interphase of mitotic cell cycle;0.0408027072384574!GO:0006376;mRNA splice site selection;0.0413299055907824!GO:0000389;nuclear mRNA 3'-splice site recognition;0.0413299055907824!GO:0043299;leukocyte degranulation;0.0413961671024211!GO:0005786;signal recognition particle, endoplasmic reticulum targeting;0.0417563190250956!GO:0042092;T-helper 2 type immune response;0.0421840237473687!GO:0051050;positive regulation of transport;0.0423976944419781!GO:0050727;regulation of inflammatory response;0.042496826337329!GO:0031347;regulation of defense response;0.042496826337329!GO:0000184;mRNA catabolic process, nonsense-mediated decay;0.0427950447498041!GO:0008270;zinc ion binding;0.0428171881229813!GO:0051052;regulation of DNA metabolic process;0.0428635169811924!GO:0002697;regulation of immune effector process;0.0429767288831582!GO:0048146;positive regulation of fibroblast proliferation;0.043027609631595!GO:0004704;NF-kappaB-inducing kinase activity;0.0433145856626645!GO:0016049;cell growth;0.0436937604057766!GO:0042108;positive regulation of cytokine biosynthetic process;0.0437741471146929!GO:0003727;single-stranded RNA binding;0.0437912716561642!GO:0004563;beta-N-acetylhexosaminidase activity;0.0443587615527525!GO:0032640;tumor necrosis factor production;0.044373033964486!GO:0008333;endosome to lysosome transport;0.0448096067903916!GO:0051325;interphase;0.0458297640658445!GO:0009306;protein secretion;0.0458297640658445!GO:0045944;positive regulation of transcription from RNA polymerase II promoter;0.0458297640658445!GO:0030374;ligand-dependent nuclear receptor transcription coactivator activity;0.0460888522242309!GO:0045603;positive regulation of endothelial cell differentiation;0.0461405477626081!GO:0048872;homeostasis of number of cells;0.0469100183532439!GO:0004218;cathepsin S activity;0.0471123724865458!GO:0006007;glucose catabolic process;0.0472682538166961!GO:0001562;response to protozoan;0.0472682538166961!GO:0048144;fibroblast proliferation;0.0473816120320379!GO:0048145;regulation of fibroblast proliferation;0.0473816120320379!GO:0046426;negative regulation of JAK-STAT cascade;0.0489019720732455!GO:0008629;induction of apoptosis by intracellular signals;0.0489707623150811 | |||
|sample_id=11869 | |sample_id=11869 | ||
|sample_note= | |sample_note= | ||
Line 76: | Line 100: | ||
|sample_tissue= | |sample_tissue= | ||
|top_motifs=NFE2L2:3.61166284728;NFE2:3.55104605596;CEBPA,B_DDIT3:3.40857250745;FOSL2:3.40709924997;BACH2:3.3017291014;FOS_FOS{B,L1}_JUN{B,D}:3.26888706741;SREBF1,2:3.19420498304;PAX2:3.17780067225;HLF:2.96531498198;SPIB:2.95486144479;SPI1:2.90705465126;NFE2L1:2.59025226645;ETS1,2:2.4068483029;NFKB1_REL_RELA:2.39216337574;EP300:2.36302804963;NFIL3:2.27954134901;NANOG{mouse}:2.27210607923;FOXP3:2.24142162368;DMAP1_NCOR{1,2}_SMARC:2.20395921315;ATF5_CREB3:2.13027638746;ATF4:2.04252961487;NR1H4:2.00196566377;FOXN1:1.93241994929;RXRA_VDR{dimer}:1.84556019065;RUNX1..3:1.76707608618;CREB1:1.63780376838;IRF1,2:1.5320736887;ATF6:1.50379210989;ELF1,2,4:1.33450629597;HMX1:1.31100552373;JUN:1.30977403314;MAFB:1.28643074997;PDX1:1.21002632295;TGIF1:1.13524989388;FOXD3:1.124219642;STAT2,4,6:1.08285832148;PPARG:1.06129465816;HMGA1,2:1.03056980438;PAX3,7:0.998401433916;IRF7:0.996765426132;BPTF:0.944664445439;ALX4:0.917199936237;PITX1..3:0.896884813662;HIF1A:0.837887252296;TFCP2:0.821042421757;ALX1:0.73136742442;HSF1,2:0.727124854331;GLI1..3:0.724448029159;ATF2:0.671488032631;ZBTB16:0.664503685516;NFATC1..3:0.589634605891;HES1:0.548245619042;HOX{A5,B5}:0.526691422911;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:0.519491934968;PAX8:0.509346423661;SMAD1..7,9:0.505376628025;HBP1_HMGB_SSRP1_UBTF:0.488919450891;ESR1:0.486798083613;CDX1,2,4:0.466592486954;ESRRA:0.464271014953;PAX1,9:0.428592868649;NR6A1:0.401401840655;XBP1:0.339959786669;NANOG:0.326620100725;EN1,2:0.253324517817;FOXO1,3,4:0.24862925849;GATA4:0.237906091387;TLX2:0.219187824053;SPZ1:0.218161940163;SRF:0.105956073187;MYB:0.103259189521;IKZF2:0.102918483796;PRDM1:0.102058865291;FOXM1:-0.00190186591304;FOXP1:-0.0324758902498;T:-0.0414813439201;RFX2..5_RFXANK_RFXAP:-0.0574820930814;FOX{D1,D2}:-0.0780638832302;TBP:-0.11718054424;AHR_ARNT_ARNT2:-0.158326063852;PAX4:-0.160275326485;DBP:-0.162078992935;FOXL1:-0.233049337615;HOXA9_MEIS1:-0.257829378694;MEF2{A,B,C,D}:-0.257996054461;NKX2-2,8:-0.306943014314;STAT5{A,B}:-0.313844463341;FOX{F1,F2,J1}:-0.31412976248;POU2F1..3:-0.330701333592;IKZF1:-0.352316832465;POU5F1:-0.394229539298;MZF1:-0.431203610423;OCT4_SOX2{dimer}:-0.437136566013;NFIX:-0.469722765633;TFAP4:-0.507119331724;EGR1..3:-0.521979497945;RXR{A,B,G}_{NR1H2,PPAR}dimers:-0.584794748406;TBX4,5:-0.585428783849;NKX3-1:-0.700558535369;RREB1:-0.706774783453;HNF4A_NR2F1,2:-0.721283512584;REST:-0.744140378108;MYFfamily:-0.780345708591;RXR{A,B,G}:-0.786298993411;NKX3-2:-0.80898577301;ZNF148:-0.852241138074;HNF1A:-0.856364690651;PAX6:-0.873526826051;VSX1,2:-0.874356213925;POU6F1:-0.876790227365;PATZ1:-0.879238077041;ZNF238:-0.886535768297;ZBTB6:-0.905790612311;TAL1_TCF{3,4,12}:-0.911029782722;SOX2:-0.955014699398;GZF1:-1.00035617283;NHLH1,2:-1.04594620284;MED-1{core}:-1.06906520564;MTE{core}:-1.10608345533;PRRX1,2:-1.12423027442;TFAP2{A,C}:-1.14470764251;GTF2A1,2:-1.1574068127;ZIC1..3:-1.1891720721;GATA6:-1.19115444561;NKX6-1,2:-1.1985081874;STAT1,3:-1.21202225984;ZFP161:-1.21900986693;MYOD1:-1.26067921393;TEF:-1.2688009253;CUX2:-1.30327716411;GCM1,2:-1.320386283;TLX1..3_NFIC{dimer}:-1.36427603105;RFX1:-1.38706517703;UFEwm:-1.38819980441;TOPORS:-1.38944873748;MTF1:-1.39854978357;SOX5:-1.40467833191;XCPE1{core}:-1.41780896499;FOXA2:-1.43595114705;RBPJ:-1.45068366206;TFAP2B:-1.46422459567;SP1:-1.46828606297;NR3C1:-1.47894641476;TEAD1:-1.4798095954;TFDP1:-1.51053064238;TP53:-1.51116108276;ONECUT1,2:-1.52080382856;AIRE:-1.52258867188;EBF1:-1.52913652078;SOX{8,9,10}:-1.53205399507;ZEB1:-1.54729889048;ZNF384:-1.54847997971;E2F1..5:-1.56323009308;KLF4:-1.56458766563;GTF2I:-1.57030226706;ZNF423:-1.57072865057;MAZ:-1.57705200378;CRX:-1.58865636449;ARID5B:-1.59062872419;POU3F1..4:-1.59572232044;RORA:-1.62751802108;NKX2-1,4:-1.63411047257;HOX{A4,D4}:-1.64707570367;EVI1:-1.71743249275;ELK1,4_GABP{A,B1}:-1.74300240721;SNAI1..3:-1.78915629408;HOX{A6,A7,B6,B7}:-1.79926235533;HIC1:-1.8030398169;BREu{core}:-1.83239204245;ADNP_IRX_SIX_ZHX:-1.8615717442;NKX2-3_NKX2-5:-1.87534940053;CDC5L:-1.9603260806;LMO2:-2.01830929016;MYBL2:-2.06874930295;FOX{I1,J2}:-2.0843753093;PAX5:-2.10908980943;AR:-2.17842156428;POU1F1:-2.26311869721;SOX17:-2.27511709747;NR5A1,2:-2.29375348657;bHLH_family:-2.29669033371;GFI1B:-2.31755028792;FOXQ1:-2.36686121165;NFY{A,B,C}:-2.48001614935;YY1:-2.48197780544;PBX1:-2.48821924873;LHX3,4:-2.64153840148;HAND1,2:-2.71457709503;GFI1:-2.7360234283;NRF1:-2.78062441828;ZNF143:-3.21365850472;LEF1_TCF7_TCF7L1,2:-3.43315726121 | |top_motifs=NFE2L2:3.61166284728;NFE2:3.55104605596;CEBPA,B_DDIT3:3.40857250745;FOSL2:3.40709924997;BACH2:3.3017291014;FOS_FOS{B,L1}_JUN{B,D}:3.26888706741;SREBF1,2:3.19420498304;PAX2:3.17780067225;HLF:2.96531498198;SPIB:2.95486144479;SPI1:2.90705465126;NFE2L1:2.59025226645;ETS1,2:2.4068483029;NFKB1_REL_RELA:2.39216337574;EP300:2.36302804963;NFIL3:2.27954134901;NANOG{mouse}:2.27210607923;FOXP3:2.24142162368;DMAP1_NCOR{1,2}_SMARC:2.20395921315;ATF5_CREB3:2.13027638746;ATF4:2.04252961487;NR1H4:2.00196566377;FOXN1:1.93241994929;RXRA_VDR{dimer}:1.84556019065;RUNX1..3:1.76707608618;CREB1:1.63780376838;IRF1,2:1.5320736887;ATF6:1.50379210989;ELF1,2,4:1.33450629597;HMX1:1.31100552373;JUN:1.30977403314;MAFB:1.28643074997;PDX1:1.21002632295;TGIF1:1.13524989388;FOXD3:1.124219642;STAT2,4,6:1.08285832148;PPARG:1.06129465816;HMGA1,2:1.03056980438;PAX3,7:0.998401433916;IRF7:0.996765426132;BPTF:0.944664445439;ALX4:0.917199936237;PITX1..3:0.896884813662;HIF1A:0.837887252296;TFCP2:0.821042421757;ALX1:0.73136742442;HSF1,2:0.727124854331;GLI1..3:0.724448029159;ATF2:0.671488032631;ZBTB16:0.664503685516;NFATC1..3:0.589634605891;HES1:0.548245619042;HOX{A5,B5}:0.526691422911;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:0.519491934968;PAX8:0.509346423661;SMAD1..7,9:0.505376628025;HBP1_HMGB_SSRP1_UBTF:0.488919450891;ESR1:0.486798083613;CDX1,2,4:0.466592486954;ESRRA:0.464271014953;PAX1,9:0.428592868649;NR6A1:0.401401840655;XBP1:0.339959786669;NANOG:0.326620100725;EN1,2:0.253324517817;FOXO1,3,4:0.24862925849;GATA4:0.237906091387;TLX2:0.219187824053;SPZ1:0.218161940163;SRF:0.105956073187;MYB:0.103259189521;IKZF2:0.102918483796;PRDM1:0.102058865291;FOXM1:-0.00190186591304;FOXP1:-0.0324758902498;T:-0.0414813439201;RFX2..5_RFXANK_RFXAP:-0.0574820930814;FOX{D1,D2}:-0.0780638832302;TBP:-0.11718054424;AHR_ARNT_ARNT2:-0.158326063852;PAX4:-0.160275326485;DBP:-0.162078992935;FOXL1:-0.233049337615;HOXA9_MEIS1:-0.257829378694;MEF2{A,B,C,D}:-0.257996054461;NKX2-2,8:-0.306943014314;STAT5{A,B}:-0.313844463341;FOX{F1,F2,J1}:-0.31412976248;POU2F1..3:-0.330701333592;IKZF1:-0.352316832465;POU5F1:-0.394229539298;MZF1:-0.431203610423;OCT4_SOX2{dimer}:-0.437136566013;NFIX:-0.469722765633;TFAP4:-0.507119331724;EGR1..3:-0.521979497945;RXR{A,B,G}_{NR1H2,PPAR}dimers:-0.584794748406;TBX4,5:-0.585428783849;NKX3-1:-0.700558535369;RREB1:-0.706774783453;HNF4A_NR2F1,2:-0.721283512584;REST:-0.744140378108;MYFfamily:-0.780345708591;RXR{A,B,G}:-0.786298993411;NKX3-2:-0.80898577301;ZNF148:-0.852241138074;HNF1A:-0.856364690651;PAX6:-0.873526826051;VSX1,2:-0.874356213925;POU6F1:-0.876790227365;PATZ1:-0.879238077041;ZNF238:-0.886535768297;ZBTB6:-0.905790612311;TAL1_TCF{3,4,12}:-0.911029782722;SOX2:-0.955014699398;GZF1:-1.00035617283;NHLH1,2:-1.04594620284;MED-1{core}:-1.06906520564;MTE{core}:-1.10608345533;PRRX1,2:-1.12423027442;TFAP2{A,C}:-1.14470764251;GTF2A1,2:-1.1574068127;ZIC1..3:-1.1891720721;GATA6:-1.19115444561;NKX6-1,2:-1.1985081874;STAT1,3:-1.21202225984;ZFP161:-1.21900986693;MYOD1:-1.26067921393;TEF:-1.2688009253;CUX2:-1.30327716411;GCM1,2:-1.320386283;TLX1..3_NFIC{dimer}:-1.36427603105;RFX1:-1.38706517703;UFEwm:-1.38819980441;TOPORS:-1.38944873748;MTF1:-1.39854978357;SOX5:-1.40467833191;XCPE1{core}:-1.41780896499;FOXA2:-1.43595114705;RBPJ:-1.45068366206;TFAP2B:-1.46422459567;SP1:-1.46828606297;NR3C1:-1.47894641476;TEAD1:-1.4798095954;TFDP1:-1.51053064238;TP53:-1.51116108276;ONECUT1,2:-1.52080382856;AIRE:-1.52258867188;EBF1:-1.52913652078;SOX{8,9,10}:-1.53205399507;ZEB1:-1.54729889048;ZNF384:-1.54847997971;E2F1..5:-1.56323009308;KLF4:-1.56458766563;GTF2I:-1.57030226706;ZNF423:-1.57072865057;MAZ:-1.57705200378;CRX:-1.58865636449;ARID5B:-1.59062872419;POU3F1..4:-1.59572232044;RORA:-1.62751802108;NKX2-1,4:-1.63411047257;HOX{A4,D4}:-1.64707570367;EVI1:-1.71743249275;ELK1,4_GABP{A,B1}:-1.74300240721;SNAI1..3:-1.78915629408;HOX{A6,A7,B6,B7}:-1.79926235533;HIC1:-1.8030398169;BREu{core}:-1.83239204245;ADNP_IRX_SIX_ZHX:-1.8615717442;NKX2-3_NKX2-5:-1.87534940053;CDC5L:-1.9603260806;LMO2:-2.01830929016;MYBL2:-2.06874930295;FOX{I1,J2}:-2.0843753093;PAX5:-2.10908980943;AR:-2.17842156428;POU1F1:-2.26311869721;SOX17:-2.27511709747;NR5A1,2:-2.29375348657;bHLH_family:-2.29669033371;GFI1B:-2.31755028792;FOXQ1:-2.36686121165;NFY{A,B,C}:-2.48001614935;YY1:-2.48197780544;PBX1:-2.48821924873;LHX3,4:-2.64153840148;HAND1,2:-2.71457709503;GFI1:-2.7360234283;NRF1:-2.78062441828;ZNF143:-3.21365850472;LEF1_TCF7_TCF7L1,2:-3.43315726121 | ||
|xref= | |||
|zenbu_report=https://fantom.gsc.riken.jp/zenbu/reports/#miRNA_expression_atlas_human;search_select_hide=table111:FF:11869-125B6;search_select_hide=table117:FF:11869-125B6 | |||
}} | }} |
Latest revision as of 18:25, 4 June 2020
Name: | CD14+ monocytes - treated with B-glucan, donor1 |
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Species: | Human (Homo sapiens) |
Library ID: | CNhs13474 |
Sample type: | primary cells |
Genomic View: | UCSC |
RefEX: | Specific genes |
FANTOM CAT: | 1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11 |
CAGEd-oPOSSUM: | link |
ZENBU report : | link |
Additional information | ||||||||||||||||||||||||||||
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Sample information
RNA information
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CAGE Accession numbers | ||||||||||||||||||||||||||||||||||||||||||||||
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Download raw sequence, BAM & CTSS | ||||||||||||||
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Relative expression to median (log10)
Transcription factors with enriched expression in this sampleRanked list of transcription factor promoter expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.
Co-expression clusters with enriched expression in this sampleRanked list of co-expression cluster expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed. <br>Analyst:NA <br><br>link to dataset.<br>data
Repeat families with enriched expression in this sample<b>Summary:</b>Ranked list of repeat family expression in this sample relative tothe median expression in the FANTOM5 collection is shown. Value is log10transformed.<br><b>Analyst:</b>NA<br><br>link to dataset.<br>data
TFBS(DNA)motifs over-represented in proximal region of promoters active in this sample
JASPAR motifs<b>Summary:</b>Association of JASPAR motif to the promoter expression in thissample. Pearson's correlation between the number of TFBSs estimated byusing the position-weight matrix for each promoter and its expression isexpressed as Z-score by taking the ones based on random position-weightmatrix, and the tail probability of the normal distribution correspondingto the Z-score is taken as the resulting P-value. Lower P-value indicatesmore (non-random) association of the motif to promoter expression<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data
library id: CNhs13474
FANTOM5 phase1 novel unique motifs<b>Summary:</b>Association of the 169 novel and unique motifs discovered in FANTOM5 phase1 in this sample. Among the de-novo motifs discovered by DMF, HOMER,ChIPMunk, and ScanAll, only novel motifs are selected after comparison with known motif sets, and their clustering based on MACRO-APE resulted in169 novel and unique motifs. Their association to the promoter expression is evaluated in the same way to the JASPAR motif above<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data
library id: CNhs13474
Novel motif | Logo | P-value |
---|---|---|
1 | 1 | 0.118 |
10 | 10 | 0.0212 |
100 | 100 | 0.899 |
101 | 101 | 0.849 |
102 | 102 | 0.726 |
103 | 103 | 0.273 |
104 | 104 | 0.562 |
105 | 105 | 0.182 |
106 | 106 | 5.28675e-4 |
107 | 107 | 0.168 |
108 | 108 | 0.935 |
109 | 109 | 0.241 |
11 | 11 | 0.136 |
110 | 110 | 0.24 |
111 | 111 | 0.0283 |
112 | 112 | 0.305 |
113 | 113 | 0.517 |
114 | 114 | 0.0107 |
115 | 115 | 0.23 |
116 | 116 | 0.786 |
117 | 117 | 0.0415 |
118 | 118 | 0.179 |
119 | 119 | 0.123 |
12 | 12 | 0.311 |
120 | 120 | 0.948 |
121 | 121 | 0.623 |
122 | 122 | 0.7 |
123 | 123 | 0.0762 |
124 | 124 | 0.544 |
125 | 125 | 0.374 |
126 | 126 | 0.171 |
127 | 127 | 0.358 |
128 | 128 | 0.0241 |
129 | 129 | 0.447 |
13 | 13 | 0.154 |
130 | 130 | 0.16 |
131 | 131 | 0.76 |
132 | 132 | 0.0719 |
133 | 133 | 0.805 |
134 | 134 | 0.495 |
135 | 135 | 0.584 |
136 | 136 | 0.934 |
137 | 137 | 0.0121 |
138 | 138 | 0.269 |
139 | 139 | 0.0385 |
14 | 14 | 0.433 |
140 | 140 | 0.117 |
141 | 141 | 0.266 |
142 | 142 | 0.0907 |
143 | 143 | 0.0157 |
144 | 144 | 0.564 |
145 | 145 | 0.365 |
146 | 146 | 0.545 |
147 | 147 | 0.544 |
148 | 148 | 0.00776 |
149 | 149 | 0.651 |
15 | 15 | 0.169 |
150 | 150 | 0.463 |
151 | 151 | 0.333 |
152 | 152 | 0.157 |
153 | 153 | 0.514 |
154 | 154 | 0.635 |
155 | 155 | 0.619 |
156 | 156 | 0.528 |
157 | 157 | 0.368 |
158 | 158 | 0.038 |
159 | 159 | 0.473 |
16 | 16 | 0.319 |
160 | 160 | 0.373 |
161 | 161 | 0.521 |
162 | 162 | 0.412 |
163 | 163 | 0.14 |
164 | 164 | 0.073 |
165 | 165 | 0.196 |
166 | 166 | 0.614 |
167 | 167 | 0.219 |
168 | 168 | 0.263 |
169 | 169 | 0.00637 |
17 | 17 | 0.164 |
18 | 18 | 0.113 |
19 | 19 | 0.336 |
2 | 2 | 0.838 |
20 | 20 | 0.284 |
21 | 21 | 0.525 |
22 | 22 | 0.242 |
23 | 23 | 0.042 |
24 | 24 | 0.322 |
25 | 25 | 0.425 |
26 | 26 | 0.035 |
27 | 27 | 0.795 |
28 | 28 | 0.458 |
29 | 29 | 0.24 |
3 | 3 | 0.0916 |
30 | 30 | 0.49 |
31 | 31 | 0.714 |
32 | 32 | 0.933 |
33 | 33 | 0.334 |
34 | 34 | 0.547 |
35 | 35 | 0.116 |
36 | 36 | 0.124 |
37 | 37 | 0.0729 |
38 | 38 | 0.348 |
39 | 39 | 0.782 |
4 | 4 | 0.975 |
40 | 40 | 0.172 |
41 | 41 | 0.00682 |
42 | 42 | 0.378 |
43 | 43 | 0.0315 |
44 | 44 | 0.942 |
45 | 45 | 0.672 |
46 | 46 | 0.14 |
47 | 47 | 0.518 |
48 | 48 | 0.439 |
49 | 49 | 0.106 |
5 | 5 | 0.259 |
50 | 50 | 0.969 |
51 | 51 | 0.398 |
52 | 52 | 0.315 |
53 | 53 | 0.391 |
54 | 54 | 0.339 |
55 | 55 | 0.43 |
56 | 56 | 0.607 |
57 | 57 | 0.814 |
58 | 58 | 0.141 |
59 | 59 | 0.134 |
6 | 6 | 0.541 |
60 | 60 | 0.0447 |
61 | 61 | 0.636 |
62 | 62 | 0.0649 |
63 | 63 | 0.472 |
64 | 64 | 0.4 |
65 | 65 | 0.206 |
66 | 66 | 0.212 |
67 | 67 | 0.454 |
68 | 68 | 0.666 |
69 | 69 | 0.556 |
7 | 7 | 0.275 |
70 | 70 | 0.0219 |
71 | 71 | 0.0285 |
72 | 72 | 0.283 |
73 | 73 | 0.134 |
74 | 74 | 0.0798 |
75 | 75 | 0.0915 |
76 | 76 | 0.181 |
77 | 77 | 0.401 |
78 | 78 | 0.102 |
79 | 79 | 0.344 |
8 | 8 | 0.336 |
80 | 80 | 0.311 |
81 | 81 | 0.364 |
82 | 82 | 0.107 |
83 | 83 | 0.0518 |
84 | 84 | 0.233 |
85 | 85 | 0.0115 |
86 | 86 | 0.051 |
87 | 87 | 0.523 |
88 | 88 | 0.641 |
89 | 89 | 0.164 |
9 | 9 | 0.37 |
90 | 90 | 0.0615 |
91 | 91 | 0.313 |
92 | 92 | 0.219 |
93 | 93 | 0.579 |
94 | 94 | 0.0399 |
95 | 95 | 0.315 |
96 | 96 | 0.36 |
97 | 97 | 0.809 |
98 | 98 | 0.109 |
99 | 99 | 0.0996 |
de novo motifs identified by HOMER in promoters active in this sample<b>Summary:</b>The result of HOMER in this sample is shown.<br><b>Analyst:</b>NA <br>
library id: CNhs13474
FANTOM5 (FF) ontology
Direct parent terms
is_a relathionship
EFO:0002091 biological replicate
FF:0011102 human CD14-positive monocytes - treated with B-glucan sample
Ancestor terms (non development)<b>Summary:</b>Connected ontology terms with is_a, part_of or located_in relationship <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source data<br>data
CL: Cell type
0000000 (cell), 0000000 (cell)
0000003 (native cell)
0000988 (hematopoietic cell)
0000548 (animal cell)
0000763 (myeloid cell)
0002371 (somatic cell)
0000766 (myeloid leukocyte)
0000219 (motile cell)
0000325 (stuff accumulating cell)
0000473 (defensive cell)
0000234 (phagocyte)
0000738 (leukocyte)
0002087 (nongranular leukocyte)
0000255 (eukaryotic cell)
0000576 (monocyte)
0000860 (classical monocyte)
0002057 (CD14-positive, CD16-negative classical monocyte)
FF: FANTOM5
0000102 (sample by type)
0000210 (human sample)
0000002 (in vivo cell sample)
0000101 (sample by species)
0000001 (sample)
0000625 (experimental infection sample)
0000350 (experimentally modified sample)
0000630 (beta-glucan treatment sample)
0011102 (human CD14-positive monocytes - treated with B-glucan sample)
Ancestor terms (development)<b>Summary:</b>Connected ontology terms with develops_from, derives_from or preceded_by relationship <br><b>Analyst:</b> Hideya Kawaji <br><br>link to source data<br>data
CL:0000049 (common myeloid progenitor)
CL:0000134 (mesenchymal cell)
CL:0002057 (CD14-positive, CD16-negative classical monocyte)