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{{f5samples
{{f5samples
|ancestors_in_anatomy_facet=UBERON:0002384,UBERON:0000479,UBERON:0000061,UBERON:0000465,UBERON:0001062
|DRA_sample_Accession=CAGE@SAMD00005980
|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000144,CL:0000723,CL:0000048,CL:0000988,CL:0000548,CL:0000034,CL:0002032,CL:0000763,CL:0000012,CL:0002320,CL:0000063,CL:0002371,CL:0000219,CL:0000004,CL:0000134,CL:0000255,CL:0000037,CL:0000566,CL:0000049,CL:0000837
|accession_numbers=CAGE;DRX007818;DRR008690;DRZ000115;DRZ001500;DRZ011465;DRZ012850
|ancestors_in_anatomy_facet=
|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000988,CL:0000548,CL:0000763,CL:0002371,CL:0000255
|ancestors_in_disease_facet=DOID:4,DOID:0050686,DOID:162,DOID:2531,DOID:14566,DOID:0060083,DOID:1240,DOID:8692
|ancestors_in_disease_facet=DOID:4,DOID:0050686,DOID:162,DOID:2531,DOID:14566,DOID:0060083,DOID:1240,DOID:8692
|ancestors_in_ff_facet=FF:0000102,FF:0000003,FF:0000210,FF:0000101,FF:0000001,FF:0100737,FF:0101035,FF:0101883,FF:0100740
|comment=
|comment=
|created_by=
|created_by=
|creation_date=
|creation_date=
|data_phase=2
|datafreeze_phase=2
|def=
|def=
|expression_enrichment_score=chr2:239148671..239148686,-!p1@HES6!2.44!960.08!HES6;;chr12:54694758..54694805,-!p1@NFE2!2.28!226.48!NFE2;;chr9:135854091..135854159,+!p1@GFI1B!2.24!174.78!GFI1B;;chr6:135502501..135502546,+!p1@MYB!2.00!116.93!MYB;;chrX:48644984..48645005,+!p1@GATA1!1.98!93.55!GATA1;;chr12:54694807..54694832,-!p3@NFE2!1.97!92.32!NFE2;;chr19:12998003..12998021,-!p1@KLF1!1.91!80.01!KLF1;;chr19:13213511..13213545,-!p2@LYL1!1.74!59.08!LYL1;;chr5:134369905..134369972,-!p1@PITX1!1.63!62.77!PITX1;;chr17:40441354..40441410,+!p2@STAT5A!1.58!36.93!STAT5A;;chr20:50159198..50159299,-!p1@NFATC2!1.52!46.77!NFATC2;;chr3:128206762..128206781,-!p2@GATA2!1.50!183.40!GATA2;;chr19:12203100..12203132,+!p1@ZNF788!1.48!57.85!ZNF788;;chr8:37963466..37963506,+!p3@ASH2L!1.47!35.70!ASH2L;;chr9:135854074..135854089,+!p2@GFI1B!1.47!28.31!GFI1B;;chr19:22193731..22193751,-!p1@ZNF208!1.41!24.62!ZNF208;;chr12:54785074..54785122,-!p2@ZNF385A!1.40!36.93!ZNF385A;;chr3:128212033..128212051,-!p1@GATA2!1.36!22.16!GATA2;;chr9:20382446..20382493,-!p4@MLLT3!1.34!20.92!MLLT3;;chr12:54689532..54689551,-!p4@NFE2!1.34!20.92!NFE2;;chr1:61548069..61548102,+!p3@NFIA!1.31!46.77!NFIA;;chr19:22235279..22235301,+!p1@ZNF257!1.29!34.46!ZNF257;;chr19:12146483..12146546,-!p1@ZNF433!1.27!64.01!ZNF433;;chr3:18486354..18486377,-!p2@SATB1!1.27!22.16!SATB1;;chr6:144385698..144385742,-!p2@PLAGL1!1.26!20.92!PLAGL1;;chr12:54694653..54694672,-!p2@NFE2!1.26!17.23!NFE2;;chr19:12267524..12267564,-!p1@ZNF20,p1@ZNF625!1.23!76.31!ZNF20;;chr11:31832807..31832823,-!p4@PAX6!1.20!14.77!PAX6;;chr10:94449703..94449718,+!p1@HHEX!1.19!55.39!HHEX;;chr19:11959532..11959593,+!p1@ZNF439!1.19!55.39!ZNF439;;chr19:10305581..10305646,-!p1@DNMT1!1.18!478.81!DNMT1;;chr19:12163769..12163798,-!p1@ZNF878!1.18!18.46!ZNF878;;chr19:54024251..54024305,+!p4@ZNF331!1.17!22.16!ZNF331;;chr19:12203069..12203094,+!p2@ZNF788!1.16!19.69!ZNF788;;chr17:38020392..38020477,-!p1@IKZF3!1.16!13.54!IKZF3;;chr1:47697881..47697910,-!p4@TAL1!1.16!13.54!TAL1;;chr11:47400045..47400060,-!p6@SPI1!1.16!13.54!SPI1;;chr2:25475120..25475176,-!p2@DNMT3A!1.14!17.23!DNMT3A;;chr19:11071685..11071798,+!p1@SMARCA4!1.13!352.03!SMARCA4;;chr3:69788576..69788648,+!p1@MITF!1.12!65.24!MITF;;chr5:134369879..134369898,-!p2@PITX1!1.12!12.31!PITX1;;chr11:47399996..47400014,-!p4@SPI1!1.12!12.31!SPI1;;chr19:11998584..11998649,+!p1@ZNF69!1.11!52.93!ZNF69;;chr2:185463247..185463263,+!p1@ZNF804A!1.11!20.92!ZNF804A;;chr19:11925071..11925113,+!p1@ZNF440!1.09!81.24!ZNF440;;chr20:42295713..42295738,+!p2@MYBL2!1.09!66.47!MYBL2;;chr10:94449675..94449694,+!p2@HHEX!1.09!30.77!HHEX;;chr1:61547894..61547968,+!p2@NFIA!1.08!32.00!NFIA;;chr20:31350184..31350200,+!p1@DNMT3B!1.08!23.39!DNMT3B;;chr19:54024313..54024361,+!p7@ZNF331!1.08!11.08!ZNF331;;chr12:54778471..54778528,-!p1@ZNF385A!1.08!11.08!ZNF385A;;chr7:137620684..137620711,-!p4@CREB3L2!1.08!11.08!CREB3L2;;chr10:94449649..94449664,+!p3@HHEX!1.07!16.00!HHEX;;chr6:135502408..135502459,+!p2@MYB!1.06!12.31!MYB;;chr8:145669791..145669834,-!p1@TONSL!1.05!29.54!TONSL;;chr8:128748308..128748324,+!p2@MYC!1.04!275.72!MYC;;chr5:88178983..88179012,-!p1@MEF2C!1.04!78.78!MEF2C;;chr7:50344289..50344323,+!p1@IKZF1!1.04!9.85!IKZF1;;chr19:46800289..46800327,+!p2@HIF3A!1.04!9.85!HIF3A;;chr19:12267577..12267593,-!p3@ZNF625!1.04!9.85!ZNF625;;chr11:31832658..31832681,-!p1@PAX6!1.04!9.85!PAX6;;chr12:54689552..54689574,-!p6@NFE2!1.04!9.85!NFE2;;chr19:11071652..11071682,+!p3@SMARCA4!1.03!34.46!SMARCA4;;chr3:24536253..24536328,-!p1@THRB!1.03!18.46!THRB;;chr7:27135591..27135658,-!p1@HOXA1!1.02!18.46!HOXA1;;chr19:12273866..12273935,+!p1@ZNF136!1.01!83.70!ZNF136;;chr19:11708311..11708332,+!p2@ZNF627!1.00!17.23!ZNF627;;chr12:54785054..54785072,-!p4@ZNF385A!0.98!9.85!ZNF385A;;chr7:50343634..50343717,+!p2@IKZF1!0.98!8.62!IKZF1;;chr19:13213465..13213478,-!p7@LYL1!0.98!8.62!LYL1;;chr19:12035913..12035933,+!p1@ZNF700,p1@ZNF763!0.95!51.70!ZNF700;;chr6:20402102..20402152,+!p1@E2F3!0.95!33.23!E2F3;;chr6:7108179..7108199,+!p4@RREB1!0.94!16.00!RREB1;;chr1:61548118..61548129,+!p9@NFIA!0.94!8.62!NFIA;;chr8:60031682..60031710,-!p2@TOX!0.93!12.31!TOX;;chr1:61548225..61548299,+!p1@NFIA!0.92!99.70!NFIA;;chr7:148581327..148581347,-!p2@EZH2!0.92!25.85!EZH2;;chr7:50344251..50344288,+!p3@IKZF1!0.92!7.39!IKZF1;;chr3:128207349..128207386,-!p3@GATA2!0.92!7.39!GATA2;;chr11:31833719..31833735,-!p15@PAX6!0.92!7.39!PAX6;;chr11:47400032..47400043,-!p5@SPI1!0.92!7.39!SPI1;;chrY:2803415..2803468,+!p1@ZFY!0.92!7.39!ZFY;;chrY:21906594..21906622,-!p1@KDM5D!0.92!7.39!KDM5D;;chr16:88519669..88519726,+!p1@ZFPM1!0.91!67.70!ZFPM1;;chr8:60031619..60031676,-!p1@TOX!0.91!16.00!TOX;;chr19:23299814..23299844,+!p1@ZNF730!0.90!8.62!ZNF730;;chr12:50479109..50479146,+!p2@SMARCD1!0.89!119.39!SMARCD1;;chr19:11708259..11708309,+!p1@ZNF627!0.88!68.93!ZNF627;;chr19:12035878..12035902,+!p2@ZNF700,p2@ZNF763!0.88!16.00!ZNF700;;chrX:131623982..131624011,-!p6@MBNL3!0.88!9.85!MBNL3;;chr19:57183114..57183145,-!p1@ZNF835!0.88!7.39!ZNF835;;chr20:42295745..42295765,+!p1@MYBL2!0.87!110.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|expression_enrichment_score=chr2:239148671..239148686,-!p1@HES6!2.44!960.08!HES6;;chr12:54694758..54694805,-!p1@NFE2!2.28!226.48!NFE2;;chr9:135854091..135854159,+!p1@GFI1B!2.24!174.78!GFI1B;;chr6:135502501..135502546,+!p1@MYB!2.00!116.93!MYB;;chrX:48644984..48645005,+!p1@GATA1!1.98!93.55!GATA1;;chr12:54694807..54694832,-!p3@NFE2!1.97!92.32!NFE2;;chr19:12998003..12998021,-!p1@KLF1!1.91!80.01!KLF1;;chr19:13213511..13213545,-!p2@LYL1!1.74!59.08!LYL1;;chr5:134369905..134369972,-!p1@PITX1!1.63!62.77!PITX1;;chr17:40441354..40441410,+!p2@STAT5A!1.58!36.93!STAT5A;;chr20:50159198..50159299,-!p1@NFATC2!1.52!46.77!NFATC2;;chr3:128206762..128206781,-!p2@GATA2!1.50!183.40!GATA2;;chr19:12203100..12203132,+!p1@ZNF788!1.48!57.85!ZNF788;;chr8:37963466..37963506,+!p3@ASH2L!1.47!35.70!ASH2L;;chr9:135854074..135854089,+!p2@GFI1B!1.47!28.31!GFI1B;;chr19:22193731..22193751,-!p1@ZNF208!1.41!24.62!ZNF208;;chr12:54785074..54785122,-!p2@ZNF385A!1.40!36.93!ZNF385A;;chr3:128212033..128212051,-!p1@GATA2!1.36!22.16!GATA2;;chr9:20382446..20382493,-!p4@MLLT3!1.34!20.92!MLLT3;;chr12:54689532..54689551,-!p4@NFE2!1.34!20.92!NFE2;;chr1:61548069..61548102,+!p3@NFIA!1.31!46.77!NFIA;;chr19:22235279..22235301,+!p1@ZNF257!1.29!34.46!ZNF257;;chr19:12146483..12146546,-!p1@ZNF433!1.27!64.01!ZNF433;;chr3:18486354..18486377,-!p2@SATB1!1.27!22.16!SATB1;;chr6:144385698..144385742,-!p2@PLAGL1!1.26!20.92!PLAGL1;;chr12:54694653..54694672,-!p2@NFE2!1.26!17.23!NFE2;;chr19:12267524..12267564,-!p1@ZNF20,p1@ZNF625!1.23!76.31!ZNF20;;chr11:31832807..31832823,-!p4@PAX6!1.20!14.77!PAX6;;chr10:94449703..94449718,+!p1@HHEX!1.19!55.39!HHEX;;chr19:11959532..11959593,+!p1@ZNF439!1.19!55.39!ZNF439;;chr19:10305581..10305646,-!p1@DNMT1!1.18!478.81!DNMT1;;chr19:12163769..12163798,-!p1@ZNF878!1.18!18.46!ZNF878;;chr19:54024251..54024305,+!p4@ZNF331!1.17!22.16!ZNF331;;chr19:12203069..12203094,+!p2@ZNF788!1.16!19.69!ZNF788;;chr17:38020392..38020477,-!p1@IKZF3!1.16!13.54!IKZF3;;chr1:47697881..47697910,-!p4@TAL1!1.16!13.54!TAL1;;chr11:47400045..47400060,-!p6@SPI1!1.16!13.54!SPI1;;chr2:25475120..25475176,-!p2@DNMT3A!1.14!17.23!DNMT3A;;chr19:11071685..11071798,+!p1@SMARCA4!1.13!352.03!SMARCA4;;chr3:69788576..69788648,+!p1@MITF!1.12!65.24!MITF;;chr5:134369879..134369898,-!p2@PITX1!1.12!12.31!PITX1;;chr11:47399996..47400014,-!p4@SPI1!1.12!12.31!SPI1;;chr19:11998584..11998649,+!p1@ZNF69!1.11!52.93!ZNF69;;chr2:185463247..185463263,+!p1@ZNF804A!1.11!20.92!ZNF804A;;chr19:11925071..11925113,+!p1@ZNF440!1.09!81.24!ZNF440;;chr20:42295713..42295738,+!p2@MYBL2!1.09!66.47!MYBL2;;chr10:94449675..94449694,+!p2@HHEX!1.09!30.77!HHEX;;chr1:61547894..61547968,+!p2@NFIA!1.08!32.00!NFIA;;chr20:31350184..31350200,+!p1@DNMT3B!1.08!23.39!DNMT3B;;chr19:54024313..54024361,+!p7@ZNF331!1.08!11.08!ZNF331;;chr12:54778471..54778528,-!p1@ZNF385A!1.08!11.08!ZNF385A;;chr7:137620684..137620711,-!p4@CREB3L2!1.08!11.08!CREB3L2;;chr10:94449649..94449664,+!p3@HHEX!1.07!16.00!HHEX;;chr6:135502408..135502459,+!p2@MYB!1.06!12.31!MYB;;chr8:145669791..145669834,-!p1@TONSL!1.05!29.54!TONSL;;chr8:128748308..128748324,+!p2@MYC!1.04!275.72!MYC;;chr5:88178983..88179012,-!p1@MEF2C!1.04!78.78!MEF2C;;chr7:50344289..50344323,+!p1@IKZF1!1.04!9.85!IKZF1;;chr19:46800289..46800327,+!p2@HIF3A!1.04!9.85!HIF3A;;chr19:12267577..12267593,-!p3@ZNF625!1.04!9.85!ZNF625;;chr11:31832658..31832681,-!p1@PAX6!1.04!9.85!PAX6;;chr12:54689552..54689574,-!p6@NFE2!1.04!9.85!NFE2;;chr19:11071652..11071682,+!p3@SMARCA4!1.03!34.46!SMARCA4;;chr3:24536253..24536328,-!p1@THRB!1.03!18.46!THRB;;chr7:27135591..27135658,-!p1@HOXA1!1.02!18.46!HOXA1;;chr19:12273866..12273935,+!p1@ZNF136!1.01!83.70!ZNF136;;chr19:11708311..11708332,+!p2@ZNF627!1.00!17.23!ZNF627;;chr12:54785054..54785072,-!p4@ZNF385A!0.98!9.85!ZNF385A;;chr7:50343634..50343717,+!p2@IKZF1!0.98!8.62!IKZF1;;chr19:13213465..13213478,-!p7@LYL1!0.98!8.62!LYL1;;chr19:12035913..12035933,+!p1@ZNF700,p1@ZNF763!0.95!51.70!ZNF700;;chr6:20402102..20402152,+!p1@E2F3!0.95!33.23!E2F3;;chr6:7108179..7108199,+!p4@RREB1!0.94!16.00!RREB1;;chr1:61548118..61548129,+!p9@NFIA!0.94!8.62!NFIA;;chr8:60031682..60031710,-!p2@TOX!0.93!12.31!TOX;;chr1:61548225..61548299,+!p1@NFIA!0.92!99.70!NFIA;;chr7:148581327..148581347,-!p2@EZH2!0.92!25.85!EZH2;;chr7:50344251..50344288,+!p3@IKZF1!0.92!7.39!IKZF1;;chr3:128207349..128207386,-!p3@GATA2!0.92!7.39!GATA2;;chr11:31833719..31833735,-!p15@PAX6!0.92!7.39!PAX6;;chr11:47400032..47400043,-!p5@SPI1!0.92!7.39!SPI1;;chrY:2803415..2803468,+!p1@ZFY!0.92!7.39!ZFY;;chrY:21906594..21906622,-!p1@KDM5D!0.92!7.39!KDM5D;;chr16:88519669..88519726,+!p1@ZFPM1!0.91!67.70!ZFPM1;;chr8:60031619..60031676,-!p1@TOX!0.91!16.00!TOX;;chr19:23299814..23299844,+!p1@ZNF730!0.90!8.62!ZNF730;;chr12:50479109..50479146,+!p2@SMARCD1!0.89!119.39!SMARCD1;;chr19:11708259..11708309,+!p1@ZNF627!0.88!68.93!ZNF627;;chr19:12035878..12035902,+!p2@ZNF700,p2@ZNF763!0.88!16.00!ZNF700;;chrX:131623982..131624011,-!p6@MBNL3!0.88!9.85!MBNL3;;chr19:57183114..57183145,-!p1@ZNF835!0.88!7.39!ZNF835;;chr20:42295745..42295765,+!p1@MYBL2!0.87!110.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|ffid_belonging_in_development=CL:0000049,CL:0000134
|fonse_cell_line=FF:0101035
|fonse_cell_line=FF:0101035
|fonse_cell_line_closure=FF:0101035
|fonse_cell_line_closure=FF:0101035
Line 35: Line 41:
|fonse_treatment_closure=
|fonse_treatment_closure=
|has_quality=
|has_quality=
|hg19bam=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.cell_line.hCAGE/acute%2520myeloid%2520leukemia%2520%2528FAB%2520M6%2529%2520cell%2520line%253aF-36E.CNhs13060.10836-111D8.hg19.nobarcode.bam
|hg19ctss=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.cell_line.hCAGE/acute%2520myeloid%2520leukemia%2520%2528FAB%2520M6%2529%2520cell%2520line%253aF-36E.CNhs13060.10836-111D8.hg19.ctss.bed.gz
|hg19fasta=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.cell_line.hCAGE/acute%2520myeloid%2520leukemia%2520%2528FAB%2520M6%2529%2520cell%2520line%253aF-36E.CNhs13060.10836-111D8.hg19.nobarcode.rdna.fa.gz
|hg38bam=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.cell_line.hCAGE/acute%2520myeloid%2520leukemia%2520%2528FAB%2520M6%2529%2520cell%2520line%253aF-36E.CNhs13060.10836-111D8.hg38.nobarcode.bam
|hg38ctss=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.cell_line.hCAGE/acute%2520myeloid%2520leukemia%2520%2528FAB%2520M6%2529%2520cell%2520line%253aF-36E.CNhs13060.10836-111D8.hg38.nobarcode.ctss.bed.gz
|id=FF:10836-111D8
|id=FF:10836-111D8
|is_a=EFO:0002091;;FF:0000003;;FF:0000210;;FF:0101883
|is_a=EFO:0002091;;FF:0000210;;FF:0101883
|is_obsolete=
|library_id=CNhs13060
|library_id_phase_based=2:CNhs13060
|microRNAs=
|microRNAs_nn=
|microRNAs_nonnovel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer/#/human#cage;sample;10836
|microRNAs_novel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer_novel/#/human#cage;sample;10836
|name=acute myeloid leukemia (FAB M6) cell line:F-36E
|name=acute myeloid leukemia (FAB M6) cell line:F-36E
|namespace=FANTOM5
|namespace=FANTOM5
Line 42: Line 60:
|profile_cagescan=,,,
|profile_cagescan=,,,
|profile_hcage=CNhs13060,LSID1000,release012,COMPLETED
|profile_hcage=CNhs13060,LSID1000,release012,COMPLETED
|profile_rnaseq=,,,
|profile_rnaseq=
|profile_srnaseq=,,,
|profile_srnaseq=,,,
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Line 57: Line 78:
|rna_weight_ug=32
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|sample_age=unknown
|sample_age=unknown
|sample_category=cell lines
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|sample_cell_catalog=RCB0776
|sample_cell_line=F-36E
|sample_cell_line=F-36E
Line 77: Line 99:
|sample_tissue=blood
|sample_tissue=blood
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|top_motifs=GATA6:4.12608792857;RXR{A,B,G}_{NR1H2,PPAR}dimers:2.4613975821;STAT5{A,B}:2.14875817148;HOXA9_MEIS1:1.95263026207;PPARG:1.84869549259;MYB:1.75372174366;POU1F1:1.6572698862;RBPJ:1.51132184901;RORA:1.4472206239;E2F1..5:1.39972612704;POU6F1:1.38485006264;HOX{A4,D4}:1.20516537492;HOX{A6,A7,B6,B7}:1.1383825983;BREu{core}:1.09304982514;POU3F1..4:1.06238496149;CUX2:0.959266753715;POU2F1..3:0.949687866429;NR6A1:0.935693630728;PDX1:0.92105145339;PAX3,7:0.899822339807;NR5A1,2:0.887634487683;SOX{8,9,10}:0.870476651397;ZNF143:0.862243270157;VSX1,2:0.851232987345;HOX{A5,B5}:0.778128746534;NANOG:0.768773302625;NFY{A,B,C}:0.728082327804;IKZF2:0.697620224096;YY1:0.681172953641;PBX1:0.665798528054;FOXQ1:0.662876457327;OCT4_SOX2{dimer}:0.628846786945;FOX{F1,F2,J1}:0.592526959733;ESRRA:0.581328140953;PAX8:0.551178689743;NANOG{mouse}:0.549012111447;AR:0.544589462557;CDX1,2,4:0.515488708015;ZBTB16:0.499945820924;HES1:0.499150047611;PRRX1,2:0.491148205355;bHLH_family:0.474836361381;SPZ1:0.468842269909;NR1H4:0.450859027896;NKX2-1,4:0.437706988904;FOXA2:0.42012652329;T:0.403451606098;STAT1,3:0.396727453568;NRF1:0.383985730489;EN1,2:0.365927306744;NKX2-2,8:0.35584712229;CRX:0.346580034795;SOX17:0.282549651833;NFIX:0.269742386091;TFAP4:0.228168429347;POU5F1:0.225837379171;EVI1:0.22447476387;LEF1_TCF7_TCF7L1,2:0.214752178052;ALX1:0.212646028089;ELK1,4_GABP{A,B1}:0.203415136536;PAX6:0.153661677978;AHR_ARNT_ARNT2:0.150575656524;SMAD1..7,9:0.136256127836;MYOD1:0.133062391741;PITX1..3:0.121149774581;GFI1:0.116581138745;TGIF1:0.0884474432263;TFDP1:0.0734737643046;RUNX1..3:0.0290284809112;HAND1,2:0.0226522985837;LHX3,4:-0.00519845451745;AIRE:-0.00724660170211;BPTF:-0.0190440033021;SPI1:-0.0222817932818;SPIB:-0.0234664425237;SNAI1..3:-0.0456937127045;HNF1A:-0.0845612444501;ZEB1:-0.0913239339199;DBP:-0.102552686257;NFE2:-0.111080303992;ZNF148:-0.119973692277;PAX1,9:-0.126228786582;TOPORS:-0.126832248009;PAX4:-0.136381116275;RREB1:-0.147146206499;ELF1,2,4:-0.147676199861;PAX2:-0.150876980859;HNF4A_NR2F1,2:-0.164672851805;REST:-0.171244234641;FOXD3:-0.172727473482;RXRA_VDR{dimer}:-0.1742920885;ADNP_IRX_SIX_ZHX:-0.186722758947;HLF:-0.198076152995;STAT2,4,6:-0.200569386485;NKX2-3_NKX2-5:-0.217337479932;NHLH1,2:-0.217841719119;KLF4:-0.219306233089;CEBPA,B_DDIT3:-0.222829446975;NR3C1:-0.229493603998;ETS1,2:-0.248160986245;NFKB1_REL_RELA:-0.26018440473;ONECUT1,2:-0.26175582194;RXR{A,B,G}:-0.28822896735;DMAP1_NCOR{1,2}_SMARC:-0.295799380387;CDC5L:-0.319548330238;FOXN1:-0.338679656642;FOX{I1,J2}:-0.340000189837;FOXP3:-0.340819961081;FOSL2:-0.385234250315;IRF7:-0.385635645812;MED-1{core}:-0.409585328471;TBX4,5:-0.410160477122;MEF2{A,B,C,D}:-0.414585584116;SOX5:-0.420907534313;MYBL2:-0.425530414505;ATF4:-0.445419666211;IRF1,2:-0.451530329859;FOS_FOS{B,L1}_JUN{B,D}:-0.452601570011;BACH2:-0.461276739901;NFE2L1:-0.465336167758;NKX3-1:-0.472273020344;ATF5_CREB3:-0.47694953176;EGR1..3:-0.477471526685;FOXP1:-0.498625981336;HSF1,2:-0.508805312452;ZNF238:-0.510629876303;NKX3-2:-0.536719682719;NFE2L2:-0.538458135932;NKX6-1,2:-0.540264577094;MTF1:-0.541141151449;EBF1:-0.552493736208;SREBF1,2:-0.561299641281;TLX2:-0.568009260373;HMGA1,2:-0.576214576515;ZNF384:-0.583964561092;PATZ1:-0.600666924314;SOX2:-0.636034936026;GTF2I:-0.653633351222;HIC1:-0.673128684632;HBP1_HMGB_SSRP1_UBTF:-0.676849786308;GZF1:-0.686720451734;TAL1_TCF{3,4,12}:-0.692890951549;RFX1:-0.704534380686;NFIL3:-0.719228522995;FOX{D1,D2}:-0.726530544445;MZF1:-0.732943978263;MYFfamily:-0.738092843655;TFAP2{A,C}:-0.748876579778;LMO2:-0.755709577537;ZBTB6:-0.761249454324;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:-0.761902306687;TEF:-0.766384517312;TLX1..3_NFIC{dimer}:-0.770988645918;CREB1:-0.781283054464;RFX2..5_RFXANK_RFXAP:-0.782723100752;ESR1:-0.796599119147;UFEwm:-0.838945371802;GCM1,2:-0.851264106227;FOXM1:-0.861888525339;HMX1:-0.88178975269;ZNF423:-0.895274383701;ZFP161:-0.91179384316;GFI1B:-0.949013417151;ATF2:-0.956699193141;MAFB:-0.962304553834;IKZF1:-0.976346698174;TEAD1:-0.977593787608;GATA4:-0.993964483935;TFAP2B:-1.01260849037;NFATC1..3:-1.0139045981;ARID5B:-1.0636658127;FOXO1,3,4:-1.07461319475;ATF6:-1.0774755248;XBP1:-1.08754912331;ZIC1..3:-1.09555279866;TP53:-1.10870562753;MAZ:-1.17149912918;PRDM1:-1.23281604641;PAX5:-1.24402576345;GLI1..3:-1.27000931359;SRF:-1.34033005721;JUN:-1.36810969721;GTF2A1,2:-1.37366478303;ALX4:-1.39849462962;SP1:-1.50230343332;TFCP2:-1.506220805;TBP:-1.53455266505;XCPE1{core}:-1.54105781834;FOXL1:-1.54904593789;MTE{core}:-1.58577607757;EP300:-2.08755102673;HIF1A:-2.13800103744
|xref=
|zenbu_report=https://fantom.gsc.riken.jp/zenbu/reports/#miRNA_expression_atlas_human;search_select_hide=table111:FF:10836-111D8;search_select_hide=table117:FF:10836-111D8
}}
}}

Latest revision as of 15:08, 3 June 2020

Name:acute myeloid leukemia (FAB M6) cell line:F-36E
Species:Human (Homo sapiens)
Library ID:CNhs13060
Sample type:cell lines
Genomic View: UCSC
RefEX:Specific genes
CAGEd-oPOSSUM:link
ZENBU report :link
Additional information
Sample information
strainNA
tissueblood
dev stageNA
sexmale
ageunknown
cell typeerythroblast
cell lineF-36E
companyRIKEN Bioresource centre
collaborationYukio Nakamura (RIKEN BRC)
External link for information[{{{sample_info_link}}} {{{sample_info_link}}}]
RNA information
lot numberNA
catalog numberNA
sample typetotal RNA
extraction protocol (Details)OP-RNA-extraction-totalRNA-miRNeasy_Mini-v1.0

CAGE Accession numbers
MethodSample accession id
CAGE  SAMD00005980
Library accession numbers

Library idMethodExp. accession idRun accession id
CNhs13060 CAGE DRX007818 DRR008690
Accession ID Hg19

Library idBAMCTSS
CNhs13060 DRZ000115 DRZ001500
Accession ID Hg38

Library idBAMCTSS
CNhs13060 DRZ011465 DRZ012850
Download raw sequence, BAM & CTSS
Hg19
FastaBAMCTSS
downloaddownloaddonwload
Hg38
BAMCTSS
downloaddonwload


Relative expression to median (log10)

Transcription factors with enriched expression in this sampleRanked list of transcription factor promoter expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.



Co-expression clusters with enriched expression in this sampleRanked list of co-expression cluster expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed. <br>Analyst:NA <br><br>link to dataset.<br>data

Coexpression clusterscore
C0-CD14-Eosinophils-Neutrophils-Basophils-CD34-immature-Peripheral0
C1-testis-epididymis-embryonic-medulla-pituitary-trachea-caudate0
C10-occipital-temporal-parietal-brain-duodenum-Neurons-Neural0
C100-rhabdomyosarcoma-gastric-pineal-Wilms-cervical-mesodermal-endometrial0
C101-small-cerebellum-maxillary-colon-parietal-epididymis-merkel0
C102-neuroblastoma-testicular-pituitary-carcinosarcoma-rectum-acantholytic-iPS0
C103-CD4-CD8-Natural-Peripheral-Whole-Neutrophils-Basophils0
C104-Mast-Basophils-immature-CD14-CD34-eye-Natural0
C105-heart-skeletal-occipital-hippocampus-acute-Sebocyte-penis0.184
C106-Hep2-epitheloid-placenta-cervical-rectal-anaplastic-glassy0
C107-Neutrophils-CD14-Eosinophils-Monocytederived-Whole-Peripheral-blood0
C108-breast-hepatoblastoma-MCF7-parotid-salivary-submaxillary-prostate0
C109-Reticulocytes-non-acute-Hodgkin-Burkitt-retinoblastoma-lymphoma0.554
C11-cerebellum-medulla-pons-parietal-occipital-middle-medial0
C110-leukemia-chronic-Eosinophils-acute-Whole-CD34-Lymphatic0
C111-medulla-lung-trachea-testis-caudate-epididymis-throat0
C112-gastric-pancreas-temporal-duodenum-small-extraskeletal-adrenal0
C113-thyroid-throat-lung-lymph-small-colon-trachea0
C114-teratocarcinoma-medulloblastoma-carcinosarcoma-iPS-anaplastic-acute-neuroblastoma0
C115-pituitary-Neural-caudate-putamen-amygdala-medulla-hippocampus0
C116-myeloma-xeroderma-tonsil-CD19-spleen-lymph-trachea0
C117-serous-clear-kidney-neuroectodermal-mesothelioma-endometrial-Intestinal0
C118-cerebellum-parietal-occipital-medial-middle-frontal-insula0
C119-CD4-CD8-Natural-Neutrophils-CD14-Peripheral-CD190
C12-Mast-Basophils-immature-chorionic-mature-CD14-Eosinophils0
C120-immature-salivary-tongue-skin-cervical-CD14-CD340
C121-NK-Natural-CD8-CD4-anaplastic-chronic-B0
C122-chronic-Reticulocytes-skeletal-leukemia-acute-colon-Tracheal0
C123-CD19-Natural-CD8-CD4-CD14-Peripheral-Basophils0
C124-small-temporal-duodenum-colon-gall-signet-Hepatocyte0
C125-mucinous-alveolar-mesothelioma-Smooth-lung-CD14-Nucleus0
C126-gastrointestinal-argyrophil-smallcell-merkel-bile-insula-brain0
C127-maxillary-small-hepatoblastoma-hepatocellular-alveolar-colon-argyrophil0
C128-testicular-choriocarcinoma-H9-teratocarcinoma-pancreatic-iPS-HES3GFP0
C129-liver-Hepatocyte-colon-duodenum-temporal-testicular-small0
C13-Neutrophils-Eosinophils-CD14-Monocytederived-Whole-Peripheral-CD40
C130-iPS-HES3GFP-H9-teratocarcinoma-testicular-colon-Alveolar0
C131-lung-trachea-Alveolar-thyroid-umbilical-throat-skin0
C132-acute-small-Dendritic-Macrophage-CD14-Neutrophils-Monocytederived0
C133-signet-gall-small-kidney-colon-ductal-adenocarcinoma0
C134-skeletal-diaphragm-tongue-throat-Skeletal-skin-penis0
C135-neuroblastoma-retinoblastoma-carcinoid-choriocarcinoma-testicular-acute-rectum0
C136-Wilms-extraskeletal-anaplastic-rhabdomyosarcoma-cholangiocellular-nonsmall-neuroectodermal0
C137-large-ductal-melanoma-cervical-Endothelial-Smooth-chronic0
C138-diffuse-Burkitt-lymphangiectasia-lymphoma-acute-CD19-pineal0
C139-astrocytoma-skin-salivary-gall-serous-Mallassezderived-renal0
C14-Whole-blood-Reticulocytes-liver-Neutrophils-Eosinophils-spleen0
C140-Renal-Endothelial-Hepatic-Lymphatic-heart-lung-spleen0
C141-Hodgkin-acute-thymus-chronic-vein-CD4-B0
C142-Preadipocyte-Fibroblast-hepatic-Ewing-Adipocyte-Olfactory-Hair0
C143-Monocytederived-CD14-Macrophage-Dendritic-Basophils-CD14CD16-Osteoblast0
C144-CD4-tonsil-NK-appendix-CD8-splenic-mycosis0
C145-neuroblastoma-peripheral-neuroectodermal-neuroepithelioma-carcinoid-adult-extraskeletal0
C146-lymphangiectasia-lymphoma-gall-lymph-tonsil-gastric-transitionalcell0
C147-Neutrophils-Eosinophils-CD4-CD14-CD8-Natural-Peripheral0
C148-kidney-small-epididymis-pancreas-serous-duodenum-temporal0
C149-occipital-medial-brain-amygdala-parietal-cerebral-cerebellum0
C15-anaplastic-small-skeletal-neuroblastoma-parietal-temporal-tongue0
C150-merkel-carcinoid-nonsmall-gastrointestinal-argyrophil-pineal-small0
C151-CD14-Natural-Basophils-CD8-Eosinophils-CD4-Mast0
C152-peripheral-neuroectodermal-neuroepithelioma-neuroblastoma-testicular-carcinoid-lung0
C153-rhabdomyosarcoma-liposarcoma-pancreatic-somatostatinoma-Reticulocytes-lymphoma-testicular0
C154-adenocarcinoma-Mesenchymal-Cardiac-small-sacrococcigeal-Smooth-Prostate0
C155-pituitary-placenta-nonsmall-cervical-smallcell-choriocarcinoma-epitheloid0
C156-plasma-splenic-hereditary-B-large-xeroderma-b0
C157-testicular-H9-testis-iPS-teratocarcinoma-colon-trachea0
C158-adrenal-gastric-temporal-parietal-duodenum-caudate-putamen0
C159-choriocarcinoma-pancreatic-placenta-chorionic-testicular-bronchioalveolar-seminal0
C16-medial-amygdala-occipital-parietal-olfactory-putamen-brain0
C160-medulla-Hepatocyte-retina-corpus-liver-pineal-cerebral0
C161-mesothelioma-Mesothelial-acute-mesenchymal-extraskeletal-renal-placenta0
C162-spinal-locus-medulla-substantia-thalamus-globus-diencephalon0
C163-Skeletal-skeletal-Pericytes-Hepatic-rhabdomyosarcoma-throat-mesenchymal0
C164-signet-corpus-optic-mucinous-substantia-salivary-choriocarcinoma0
C165-epithelioid-Adipocyte-mesothelioma-myxofibrosarcoma-lung-gastric-Mesothelial0
C166-Macrophage-Monocytederived-Dendritic-adipose-lymph-CD14-lung0
C167-Basophils-Mast-Eosinophils-Neutrophils-Peripheral-Whole-CD40
C168-Mast-CD14-immature-Basophils-Eosinophils-CD34-Peripheral0
C169-hereditary-adult-gall-lymphangiectasia-chronic-b-choriocarcinoma0
C17-Mast-CD14-Monocytederived-Lymphatic-Smooth-mesenchymal-Macrophage0
C170-epitheloid-cervical-Hep2-keratoacanthoma-adult-neuroblastoma-signet0
C171-merkel-neuroblastoma-pineal-retinoblastoma-carcinoid-small-eye0
C172-chorionic-skeletal-tongue-amniotic-liver-gastrointestinal-Pericytes0
C173-Adipocyte-mature-skin-left-Hepatocyte-Osteoblast-adipose0
C174-CD14-Neutrophils-Smooth-mesothelioma-embryonic-Monocytederived-Eosinophils0
C175-Eosinophils-Neutrophils-CD4-Basophils-CD19-CD8-Natural0
C176-Eosinophils-Neutrophils-Mast-CD14-CD4-Basophils-CD190.0632
C177-melanoma-Melanocyte-mesenchymal-retina-Mallassezderived-Gingival-squamous0
C178-spleen-liver-Hepatocyte-b-lymph-vein-thymus0
C179-CD19-Peripheral-lymphoma-blood-lymph-spleen-tonsil0
C18-CD4-CD8-thymus-Whole-Peripheral-Natural-blood0
C180-skeletal-heart-Hepatocyte-acute-occipital-hippocampus-middle0.339
C181-liposarcoma-somatostatinoma-neuroblastoma-mesothelioma-nonsmall-small-Alveolar0
C182-renal-mature-mesothelioma-lung-Mammary-Adipocyte-acute0
C183-acute-non-CD34-diffuse-CD133-myeloma-Burkitt0
C184-somatostatinoma-smallcell-nonsmall-small-gastrointestinal-pineal-thyroid0
C185-small-adrenal-gastric-Mesenchymal-acute-HES3GFP-testis0
C186-squamous-papillotubular-large-Tracheal-oral-Small-epidermoid0
C187-migratory-immature-Dendritic-CD19-CD14-Monocytederived-Macrophage0
C188-left-heart-tongue-skeletal-Skeletal-diaphragm-throat0
C189-b-splenic-tonsil-CD19-lymph-appendix-spleen0
C19-embryonic-testis-cord-chronic-CD14-NK-mesothelioma0
C190-colon-small-rectum-duodenum-appendix-temporal-oral0
C191-leiomyoblastoma-Mast-parietal-acute-bone-neuroepithelioma-embryonic0
C192-Neutrophils-CD14-Peripheral-Eosinophils-CD8-Natural-CD40
C193-Mesenchymal-Adipocyte-mature-Cardiac-heart-CD14CD16-CD140
C194-MCF7-breast-prostate-Intestinal-diffuse-Wilms-Alveolar0
C195-Small-Gingival-Bronchial-Smooth-mesenchymal-Urothelial-Tracheal0
C196-testicular-iPS-H9-teratocarcinoma-HES3GFP-choriocarcinoma-endometrial0
C197-tongue-esophagus-tonsil-salivary-cervix-nasal-Gingival0
C198-Mesenchymal-Hair-Hepatic-Fibroblast-Smooth-tenocyte-Pericytes0
C199-glioblastoma-B-osteosarcoma-Fibroblast-heart-rhabdomyosarcoma-myxofibrosarcoma0
C2-Eosinophils-Neutrophils-CD14-Whole-Basophils-Peripheral-Mast0
C20-heart-left-skeletal-diaphragm-tongue-umbilical-throat0
C200-seminal-Cardiac-Smooth-Hair-submaxillary-Neutrophils-mixed-0.0688
C201-colon-small-adenocarcinoma-duodenum-temporal-signet-gall0
C202-salivary-skin-penis-tongue-uterus-cervical-immature0
C203-acute-NK-chronic-CD133-lymphoma-immature-Dendritic0
C204-Smooth-nasal-CD4-CD19-CD8-CD14-CD340
C205-mycosis-cord-hairy-xeroderma-CD4-B-b0
C206-melanoma-somatostatinoma-nonsmall-small-neuroblastoma-smallcell-pituitary0
C207-Corneal-Keratinocyte-Esophageal-Mammary-Bronchial-Urothelial-Sebocyte0
C208-skin-amniotic-papillotubular-salivary-umbilical-Alveolar-serous0
C209-acute-myelodysplastic-CD34-granulocyte-CD133-liver-spleen0
C21-cord-mycosis-hairy-xeroderma-adult-CD4-anaplastic0
C210-Burkitt-lymphoma-appendix-acute-diffuse-CD19-tonsil0
C211-small-Hepatocyte-liver-colon-temporal-duodenum-kidney0
C212-chronic-acute-Whole-Reticulocytes-leukemia-blood-CD340
C213-CD14-Natural-CD8-CD4-Basophils-Eosinophils-Peripheral0
C214-Neurons-Neural-duodenum-temporal-occipital-parietal-brain0
C215-chronic-acute-peripheral-Hepatocyte-osteosarcoma-NK-immature0
C216-osteosarcoma-Smooth-Mesenchymal-large-neuroectodermal-acute-CD340
C217-carcinoid-neuroectodermal-mature-mesodermal-colon-acute-occipital0
C218-tonsil-lymph-CD19-spleen-colon-appendix-salivary0
C219-nasal-Basophils-amniotic-Melanocyte-CD14-Osteoblast-duodenum0
C22-CD4-CD8-Natural-Basophils-CD14-Peripheral-CD190
C220-Adipocyte-mature-left-breast-skin-liver-adipose0
C221-alveolar-Osteoblast-Myoblast-mesenchymal-liposarcoma-Smooth-hepatocellular0
C222-Melanocyte-Tracheal-Neutrophils-seminal-Smooth-Hair-Chondrocyte0.091
C223-Chondrocyte-basal-renal-Fibroblast-Smooth-spindle-Synoviocyte0
C224-clear-serous-pleomorphic-choriocarcinoma-mesothelioma-amniotic-renal0
C225-ductal-alveolar-giant-prostate-salivary-squamous-Tracheal0
C226-Corneal-Keratinocyte-Esophageal-Urothelial-Mammary-Bronchial-Tracheal0
C227-chorionic-amniotic-Mesenchymal-Placental-gastric-diaphragm-tongue0
C228-colon-Intestinal-Prostate-hepatoblastoma-hepatocellular-testis-adult0
C229-Mesenchymal-CD4-Melanocyte-acute-skeletal-left-heart0
C23-CD4-CD8-Natural-Peripheral-Basophils-CD19-CD140
C230-aorta-normal-heart-penis-osteosarcoma-basal-lung0
C231-Mesothelial-mesenchymal-mesothelioma-Fibroblast-Preadipocyte-leiomyoma-mycosis0
C232-teratocarcinoma-HES3GFP-H9-iPS-testicular-neuroblastoma-cerebellum0
C233-uterus-cervix-ovary-epididymis-colon-rectum-MCF70
C234-oral-epidermoid-malignant-cervical-ductal-lung-keratoacanthoma0
C235-Intestinal-Prostate-liver-colon-small-kidney-pancreas0
C236-CD14-Neutrophils-Monocytederived-renal-Eosinophils-testis-mesothelioma0
C237-acute-breast-testicular-hepatoblastoma-chronic-argyrophil-Bronchial0
C238-stomach-gall-breast-duodenum-temporal-MCF7-smallcell0
C239-CD4-lymphangiectasia-CD8-NK-mycosis-Renal-hairy0
C24-pineal-eye-retina-retinoblastoma-medulloblastoma-small-cerebral0
C240-Adipocyte-Preadipocyte-Osteoblast-Chondrocyte-tenocyte-Synoviocyte-mesenchymal0
C241-Reticulocytes-chronic-Tracheal-Hodgkin-Endothelial-Hair-thymus0.572
C242-acute-Chondrocyte-myelodysplastic-granulocyte-biphenotypic-Fibroblast-stomach0
C243-Chondrocyte-trachea-Synoviocyte-mesodermal-renal-Fibroblast-Ewing0
C244-CD14-Monocytederived-Hepatocyte-heart-Neutrophils-acute-Macrophage0
C245-prostate-penis-salivary-esophagus-kidney-Neutrophils-Pancreatic0
C246-Neutrophils-Eosinophils-Whole-CD14-CD14CD16-Basophils-migratory0
C247-pons-locus-medulla-spinal-paracentral-medial-occipital0
C248-iPS-Aortic-Hep2-amygdala-acute-medial-Myoblast0
C249-nonsmall-small-smallcell-occipital-somatostatinoma-maxillary-medial0
C25-small-colon-temporal-duodenum-liver-Hepatocyte-gall0
C250-Mast-Neutrophils-CD14-Eosinophils-CD8-Peripheral-CD40
C251-gall-tonsil-trachea-CD14-salivary-throat-tongue0
C252-hepatic-Olfactory-sacrococcigeal-leiomyoma-normal-Synoviocyte-glioblastoma0
C253-spleen-rhabdomyosarcoma-Hepatocyte-small-uterus-liver-rectum0
C254-prostate-rhabdomyosarcoma-seminal-Fibroblast-transitionalcell-Smooth-Iris0
C255-Wilms-leiomyoblastoma-kidney-adrenal-MCF7-epithelioid-Mast0
C256-occipital-caudate-amygdala-medial-thalamus-hippocampus-medulla0
C257-pineal-insula-frontal-occipital-temporal-medial-paracentral0
C258-hepatoblastoma-hepatocellular-signet-colon-Intestinal-Prostate-gastric0
C259-Preadipocyte-Adipocyte-Fibroblast-Chondrocyte-tenocyte-normal-Ewing0
C26-Eosinophils-Neutrophils-CD14-CD14CD16-Basophils-Monocytederived-Whole0
C260-acute-chronic-Natural-NK-Basophils-biphenotypic-blood0
C261-locus-medial-parietal-pons-diencephalon-olfactory-spinal0
C262-breast-MCF7-skeletal-Reticulocytes-mucinous-hepatoblastoma-Wilms0
C263-cervical-keratoacanthoma-tongue-skin-esophagus-throat-tonsil0
C264-giant-keratoacanthoma-colon-fibrosarcoma-HES3GFP-Hep2-acute0
C265-CD4-Eosinophils-CD14-Natural-CD19-Basophils-CD8-0.0556
C266-acute-chronic-leukemia-small-choriocarcinoma-hepatoma-Mast0
C267-pancreatic-placenta-choriocarcinoma-testicular-teratocarcinoma-chorionic-clear0
C268-Mallassezderived-Urothelial-Gingival-Small-Bronchial-Tracheal-Prostate0
C269-Basophils-Mast-Eosinophils-mature-CD14-chorionic-CD40
C27-pancreas-temporal-duodenum-salivary-ductus-umbilical-lung0
C270-CD4-Fibroblast-acute-iPS-Aortic-CD34-Smooth-0.0311
C271-pineal-spinal-locus-globus-medulla-thalamus-cerebellum0
C272-CD19-CD4-CD8-Whole-Peripheral-lymph-tonsil0
C273-Neutrophils-CD14-Eosinophils-Monocytederived-CD4-Natural-Mast0
C274-CD14-Mast-immature-Basophils-mature-vagina-Hepatocyte0
C275-pons-medulla-cerebellum-locus-thalamus-diencephalon-spinal0
C276-mesothelioma-kidney-renal-small-clear-cerebellum-Renal0
C277-mesothelioma-epithelioid-thyroid-extraskeletal-alveolar-glioblastoma-adenocarcinoma0
C278-amygdala-hippocampus-insula-medial-putamen-temporal-olfactory0
C279-parietal-cerebellum-occipital-temporal-middle-duodenum-medial0
C28-thymus-acute-vein-Hodgkin-chronic-throat-Dendritic0
C280-Mast-Natural-CD19-CD8-Eosinophils-CD34-CD40
C281-Hodgkin-Reticulocytes-chronic-NK-acute-retinoblastoma-small0.528
C282-acute-B-tonsil-CD19-submaxillary-lymph-throat0
C283-tenocyte-Chondrocyte-mesenchymal-Macrophage-pleomorphic-Synoviocyte-cholangiocellular0
C284-parietal-occipital-medial-temporal-olfactory-locus-hippocampus0
C285-cervical-Hep2-small-colon-temporal-duodenum-bronchogenic0
C286-cerebellum-occipital-optic-parietal-globus-caudate-medial0
C287-Hepatocyte-Chondrocyte-Adipocyte-Synoviocyte-liver-tenocyte-mesenchymal0
C288-Chondrocyte-Renal-Pericytes-Fibroblast-aorta-Smooth-Meningeal0
C289-chorionic-skeletal-heart-Mast-amniotic-granulosa-left0
C29-mature-adipose-Adipocyte-breast-Lymphatic-vein-heart0
C290-Eosinophils-CD14-Basophils-Mast-CD4-CD8-immature0
C291-spinal-substantia-retina-medulla-tongue-skeletal-trachea0
C292-Mesenchymal-skin-umbilical-Adipocyte-mesenchymal-Chondrocyte-skeletal0
C293-CD14-CD14CD16-Basophils-Peripheral-immature-Eosinophils-CD340
C294-CD14-Macrophage-Monocytederived-CD14CD16-Neutrophils-Basophils-Peripheral0
C295-Fibroblast-Smooth-Myoblast-Chondrocyte-hepatic-Synoviocyte-Preadipocyte0
C296-gall-small-mesothelioma-acute-bronchioalveolar-epidermoid-mixed0
C297-Eosinophils-CD4-Basophils-Natural-Neutrophils-CD8-Peripheral0
C298-small-optic-substantia-thalamus-diencephalon-globus-occipital0
C299-CD14CD16-Eosinophils-Neutrophils-CD14-Whole-Basophils-blood0
C3-occipital-temporal-insula-medial-postcentral-frontal-amygdala0
C30-thyroid-throat-mesothelioma-mucinous-trachea-chorionic-mesenchymal0
C300-CD4-CD8-NK-Natural-blood-mycosis-Basophils0
C301-Smooth-mesenchymal-Endothelial-Hepatic-basal-hepatic-chorionic0
C302-acute-peripheral-Neutrophils-NK-myelodysplastic-CD34-carcinoid0
C303-CD14-Basophils-Peripheral-Eosinophils-CD14CD16-Neutrophils-Whole0
C305-heart-skeletal-smooth-left-bladder-penis-esophagus0
C31-skeletal-tongue-diaphragm-throat-penis-skin-trachea0
C32-middle-occipital-parietal-hippocampus-amygdala-medial-olfactory0
C33-Reticulocytes-liver-Whole-blood-chronic-acute-spleen0
C34-placenta-chorionic-choriocarcinoma-mesothelioma-Wilms-Smooth-bile0
C35-caudate-putamen-diencephalon-nucleus-globus-thalamus-insula0
C36-B-b-splenic-plasma-xeroderma-adrenal-Burkitt0
C37-salivary-submaxillary-parotid-seminal-tongue-ductus-trachea0
C38-extraskeletal-rhabdomyosarcoma-adrenal-rectal-mesothelioma-lung-Wilms0
C39-epididymis-ductus-seminal-testis-acute-thyroid-CD1330
C4-optic-corpus-substantia-medulla-spinal-thalamus-globus0
C40-eye-retina-Lens-pineal-tongue-retinoblastoma-small0
C41-retina-eye-medulla-Retinal-medulloblastoma-kidney-pineal0
C42-small-lung-maxillary-pharyngeal-Mesenchymal-Wilms-colon0
C43-ductus-seminal-duodenum-temporal-gall-prostate-bladder0
C44-Dendritic-CD19-CD133-granulocyte-acute-thymus-immature0
C45-testicular-choriocarcinoma-H9-teratocarcinoma-Wilms-pancreatic-iPS0
C46-acute-Hodgkin-thymus-CD8-chronic-CD4-merkel0
C47-CD19-Burkitt-acute-xeroderma-tonsil-lymphoma-appendix0
C48-smooth-bladder-esophagus-colon-penis-aorta-uterus0
C49-H9-iPS-testicular-HES3GFP-teratocarcinoma-hepatoblastoma-choriocarcinoma0
C5-Hepatocyte-liver-hepatocellular-Intestinal-kidney-small-pancreas0
C50-chorionic-placenta-amniotic-migratory-smallcell-chronic-choriocarcinoma0
C51-kidney-mesothelioma-renal-signet-gall-lung-pancreas0
C52-adult-NK-chronic-cord-testis-embryonic-myeloma0
C53-medulloblastoma-pineal-retinoblastoma-small-retina-eye-pituitary0
C54-Dendritic-Macrophage-Monocytederived-CD14-leiomyoma-adipose-immature0
C55-hepatocellular-Intestinal-liver-Prostate-fibrosarcoma-Hepatocyte-hepatoblastoma0
C56-heart-left-umbilical-skeletal-penis-diaphragm-tongue0
C57-Neutrophils-Eosinophils-Whole-CD4-CD8-CD19-Natural0
C58-Melanocyte-melanoma-retina-Retinal-eye-migratory-H90
C59-Smooth-Fibroblast-Mesenchymal-tenocyte-Ewing-skin-hepatic0
C6-CD14-Eosinophils-Basophils-Peripheral-CD34-Natural-immature0
C60-esophagus-tonsil-throat-tongue-uterus-cervix-cervical0
C61-migratory-Dendritic-immature-Macrophage-xeroderma-cord-b0
C62-Burkitt-tonsil-CD19-submaxillary-spleen-salivary-lymph0
C63-neuroectodermal-neuroblastoma-carcinoid-peripheral-chronic-neuroepithelioma-acute0
C64-Mast-chronic-acute-immature-chorionic-Basophils-Dendritic0
C65-CD14-Eosinophils-Monocytederived-Basophils-immature-Macrophage-Neutrophils0
C66-cerebellum-middle-occipital-parietal-medial-amygdala-hippocampus0
C67-CD14-Monocytederived-Macrophage-dura-Dendritic-spleen-lung0
C68-amniotic-chorionic-Placental-salivary-placenta-tongue-mesothelioma0
C69-anaplastic-CD14-cord-hairy-mycosis-adult-NK0
C7-CD14-Eosinophils-Neutrophils-Smooth-Basophils-Macrophage-Mast0
C70-parotid-submaxillary-salivary-throat-trachea-aorta-tongue0
C71-Monocytederived-Macrophage-CD14-Dendritic-Osteoblast-leiomyoma-Prostate0
C72-skeletal-tongue-throat-heart-diaphragm-penis-left0
C73-pineal-eye-retina-caudate-cerebellum-left-parietal0
C74-splenic-B-b-plasma-xeroderma-lymphoma-hairy0
C75-Eosinophils-Natural-CD8-Basophils-CD14-CD4-Peripheral0
C76-argyrophil-gastrointestinal-temporal-duodenum-neuroblastoma-merkel-smallcell0
C77-Saos2-osteosarcoma-Neutrophils-Natural-Chondrocyte-Basophils-CD80
C78-lymphoma-plasma-tonsil-appendix-lymph-seminal-trachea0
C79-chorionic-Chondrocyte-Cardiac-Smooth-Fibroblast-Preadipocyte-Mesenchymal0
C8-Natural-CD8-Basophils-CD4-CD14-Peripheral-CD340
C80-immature-migratory-CD14-Dendritic-splenic-cord-Mast0
C81-trachea-salivary-throat-aorta-eye-submaxillary-parotid0
C82-Basophils-CD14-Eosinophils-Natural-Peripheral-immature-CD340
C83-choriocarcinoma-pancreatic-placenta-chorionic-HES3GFP-testicular-amniotic0
C84-choriocarcinoma-pancreatic-Wilms-Mallassezderived-thymus-salivary-colon0
C85-neuroblastoma-carcinoid-retinoblastoma-small-pineal-rhabdomyosarcoma-medulloblastoma0
C86-colon-carcinoid-small-neuroectodermal-giant-large-neuroepithelioma0
C87-retinoblastoma-left-nonsmall-heart-small-diaphragm-bronchogenic0
C88-Melanocyte-melanoma-Macrophage-Mesenchymal-migratory-Dendritic-Monocytederived0
C89-small-retinoblastoma-medulloblastoma-iPS-acantholytic-eye-bronchogenic0
C9-skeletal-diaphragm-tongue-throat-penis-heart-left0
C90-neuroectodermal-peripheral-neuroepithelioma-neuroblastoma-carcinoid-parietal-putamen0
C91-Fibroblast-Smooth-mesenchymal-Mesothelial-Small-Preadipocyte-Hair0
C92-CD14CD16-CD14-Eosinophils-Basophils-Neutrophils-Macrophage-Whole0
C93-chronic-acute-leukemia-acantholytic-medulloblastoma-testis-papillotubular0
C94-smallcell-adrenal-lung-nonsmall-small-somatostatinoma-teratocarcinoma0
C95-lung-aorta-trachea-penis-Alveolar-throat-endometrioid0
C96-non-acute-tonsil-spleen-Burkitt-lymphoma-appendix0
C97-small-smallcell-gastrointestinal-argyrophil-putamen-duodenum-brain0
C98-CD8-Natural-Basophils-blood-CD4-Peripheral-Whole0
C99-hairy-mycosis-submaxillary-salivary-cord-kidney-parotid0



Repeat families with enriched expression in this sample<b>Summary:</b>Ranked list of repeat family expression in this sample relative tothe median expression in the FANTOM5 collection is shown. Value is log10transformed.<br><b>Analyst:</b>NA<br><br>link to dataset.<br>data



TFBS(DNA)motifs over-represented in proximal region of promoters active in this sample

JASPAR motifs<b>Summary:</b>Association of JASPAR motif to the promoter expression in thissample. Pearson's correlation between the number of TFBSs estimated byusing the position-weight matrix for each promoter and its expression isexpressed as Z-score by taking the ones based on random position-weightmatrix, and the tail probability of the normal distribution correspondingto the Z-score is taken as the resulting P-value. Lower P-value indicatesmore (non-random) association of the motif to promoter expression<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data

library id: CNhs13060

Jaspar motifP-value
MA0002.20.324
MA0003.10.829
MA0004.10.157
MA0006.10.325
MA0007.10.679
MA0009.10.269
MA0014.10.345
MA0017.10.0242
MA0018.24.53685e-4
MA0019.10.375
MA0024.14.66494e-5
MA0025.10.209
MA0027.10.432
MA0028.10.0801
MA0029.10.0581
MA0030.10.438
MA0031.10.903
MA0035.22.41967e-18
MA0038.10.388
MA0039.20.239
MA0040.10.402
MA0041.10.605
MA0042.10.949
MA0043.10.0109
MA0046.10.834
MA0047.20.251
MA0048.10.697
MA0050.10.081
MA0051.10.0862
MA0052.11.40205e-4
MA0055.10.131
MA0057.10.374
MA0058.10.138
MA0059.10.0024
MA0060.17.18234e-7
MA0061.10.659
MA0062.20.0584
MA0065.28.13813e-4
MA0066.10.367
MA0067.10.46
MA0068.10.00296
MA0069.10.195
MA0070.10.426
MA0071.10.152
MA0072.10.228
MA0073.10.998
MA0074.10.285
MA0076.10.121
MA0077.10.932
MA0078.10.779
MA0079.20.423
MA0080.20.875
MA0081.10.587
MA0083.12.80973e-4
MA0084.10.719
MA0087.10.184
MA0088.10.00284
MA0090.10.0348
MA0091.10.504
MA0092.10.336
MA0093.10.193
MA0099.20.174
MA0100.10.00434
MA0101.10.851
MA0102.20.138
MA0103.10.306
MA0104.28.56882e-4
MA0105.18.12442e-4
MA0106.10.493
MA0107.10.409
MA0108.22.55158e-8
MA0111.10.208
MA0112.20.144
MA0113.10.651
MA0114.10.00494
MA0115.10.00584
MA0116.17.66743e-4
MA0117.10.654
MA0119.10.144
MA0122.10.513
MA0124.10.468
MA0125.10.734
MA0131.10.678
MA0135.10.0896
MA0136.10.199
MA0137.20.102
MA0138.20.479
MA0139.10.349
MA0140.14.4466e-28
MA0141.10.00866
MA0142.10.0936
MA0143.10.499
MA0144.10.993
MA0145.10.728
MA0146.10.29
MA0147.17.08098e-5
MA0148.10.201
MA0149.10.00364
MA0150.10.636
MA0152.10.809
MA0153.10.436
MA0154.10.0773
MA0155.10.38
MA0156.10.273
MA0157.10.373
MA0159.10.901
MA0160.10.00299
MA0162.10.687
MA0163.11.10789e-6
MA0164.10.817
MA0258.10.149
MA0259.10.133



FANTOM5 phase1 novel unique motifs<b>Summary:</b>Association of the 169 novel and unique motifs discovered in FANTOM5 phase1 in this sample. Among the de-novo motifs discovered by DMF, HOMER,ChIPMunk, and ScanAll, only novel motifs are selected after comparison with known motif sets, and their clustering based on MACRO-APE resulted in169 novel and unique motifs. Their association to the promoter expression is evaluated in the same way to the JASPAR motif above<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data

library id: CNhs13060

Novel motifP-value
10.00577
100.0606
1000.642
1010.637
1020.286
1030.0201
1040.992
1050.305
1060.612
1070.554
1080.723
1090.0537
110.0928
1100.156
1110.0447
1120.837
1130.63
1140.0176
1150.0189
1160.344
1170.0599
1180.835
1190.74
120.836
1200.793
1210.724
1220.351
1230.0617
1240.0375
1250.724
1260.195
1270.15
1280.66
1290.117
130.0753
1300.171
1310.972
1320.163
1330.0024
1340.885
1350.742
1360.757
1370.834
1380.899
1390.039
140.945
1400.151
1410.0265
1420.819
1430.818
1440.951
1450.943
1460.922
1470.225
1480.102
1490.182
150.0655
1500.889
1510.721
1520.152
1530.276
1540.872
1550.0778
1560.575
1570.601
1580.0683
1590.479
160.594
1600.102
1610.0508
1620.968
1630.663
1640.78
1650.583
1660.312
1670.0272
1680.972
1690.834
170.144
180.152
190.78
20.432
200.818
210.548
220.674
230.679
240.609
250.27
260.0575
270.989
280.539
290.0881
30.288
300.204
310.797
320.335
330.872
340.958
350.0942
360.0304
370.465
380.662
390.622
40.202
400.379
410.441
420.235
430.256
440.844
450.743
460.0623
470.0513
480.468
490.0338
50.154
500.666
510.304
520.659
530.709
540.85
550.762
560.493
570.0937
580.219
590.637
60.976
600.746
610.439
620.064
630.841
640.134
650.851
660.0202
670.844
680.352
690.328
70.101
700.66
710.091
720.934
730.575
740.0947
750.0237
760.704
770.876
780.0196
790.0973
80.0865
800.698
810.463
820.551
830.221
840.198
850.933
860.89
870.93
880.949
890.459
90.695
900.0127
910.5
920.832
930.263
940.049
950.288
960.369
970.923
980.0629
990.426



de novo motifs identified by HOMER in promoters active in this sample<b>Summary:</b>The result of HOMER in this sample is shown.<br><b>Analyst:</b>NA <br> library id: CNhs13060


FANTOM5 (FF) ontology

Direct parent terms


Ancestor terms (non development)<b>Summary:</b>Connected ontology terms with is_a, part_of or located_in relationship <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source data<br>data

CL: Cell type
0000000 (cell), 0000000 (cell)
0000003 (native cell)
0000988 (hematopoietic cell)
0000548 (animal cell)
0000763 (myeloid cell)
0002371 (somatic cell)
0000255 (eukaryotic cell)

DOID: Disease
4 (disease)
0050686 (organ system cancer)
162 (cancer)
2531 (hematologic cancer)
14566 (disease of cellular proliferation)
0060083 (immune system cancer)
1240 (leukemia)
8692 (myeloid leukemia)

FF: FANTOM5
0000102 (sample by type)
0000003 (cell line sample)
0000210 (human sample)
0000101 (sample by species)
0000001 (sample)
0100737 (leukemia cell line sample)
0101035 (hematopoietic cell line sample)
0101883 (acute myeloid leukemia cell line sample)
0100740 (myeloid leukemia cell line sample)

Ancestor terms (development)<b>Summary:</b>Connected ontology terms with develops_from, derives_from or preceded_by relationship <br><b>Analyst:</b> Hideya Kawaji <br><br>link to source data<br>data
CL:0000049 (common myeloid progenitor)
CL:0000134 (mesenchymal cell)

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