FF:11870-125B7: Difference between revisions
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{{f5samples | {{f5samples | ||
|ancestors_in_anatomy_facet= | |DRA_sample_Accession=CAGE@SAMD00004743 | ||
|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003 | |accession_numbers=CAGE;DRX008139;DRR009011;DRZ000436;DRZ001821;DRZ011786;DRZ013171 | ||
|ancestors_in_anatomy_facet= | |||
|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000988,CL:0000548,CL:0000763,CL:0002371,CL:0000766,CL:0000219,CL:0000325,CL:0000473,CL:0000234,CL:0000738,CL:0002087,CL:0000255,CL:0000576,CL:0000860,CL:0002057 | |||
|ancestors_in_disease_facet= | |ancestors_in_disease_facet= | ||
|ancestors_in_ff_facet=FF:0000102,FF:0000210,FF:0000002,FF:0000101,FF:0000001,FF:0000625,FF:0000350,FF:0000628,FF:0011103 | |||
|comment= | |comment= | ||
|created_by= | |created_by= | ||
|creation_date= | |creation_date= | ||
|data_phase=2 | |||
|datafreeze_phase=2 | |||
|def= | |def= | ||
|expression_enrichment_score=chr2:68592406..68592424,+!p1@PLEK!3.57!3718.43!PLEK;;chr16:85932760..85932775,+!p1@IRF8!3.09!1235.21!IRF8;;chr11:47400078..47400106,-!p1@SPI1!2.72!527.95!SPI1;;chr10:64576105..64576133,-!p1@EGR2!2.63!842.00!EGR2;;chr10:35484053..35484076,+!p1@CREM!2.55!849.43!CREM;;chr12:54778471..54778528,-!p1@ZNF385A!2.50!317.38!ZNF385A;;chr7:115670804..115670825,-!p1@TFEC!2.43!266.92!TFEC;;chr11:47399947..47399961,-!p3@SPI1!2.26!181.62!SPI1;;chr11:64764435..64764449,-!p1@BATF2!2.18!202.37!BATF2;;chr7:128577972..128578047,+!p1@IRF5!2.15!217.74!IRF5;;chr6:36355431..36355466,-!p1@ETV7!2.12!130.39!ETV7;;chr6:106534192..106534224,+!p1@PRDM1!2.11!346.33!PRDM1;;chr11:47400062..47400077,-!p2@SPI1!2.06!115.02!SPI1;;chr21:34442439..34442455,+!p1@OLIG1!2.05!110.15!OLIG1;;chr2:70142232..70142251,+!p1@MXD1!2.02!555.10!MXD1;;chr17:45810594..45810608,+!p1@TBX21!1.98!93.50!TBX21;;chr5:131826457..131826514,-!p1@IRF1!1.97!3358.78!IRF1;;chr20:39317868..39317884,-!p1@MAFB!1.97!1029.77!MAFB;;chr1:25256756..25256774,-!p1@RUNX3!1.96!165.74!RUNX3;;chr21:36260295..36260310,-!p3@RUNX1!1.93!131.41!RUNX1;;chr11:47399996..47400014,-!p4@SPI1!1.89!76.08!SPI1;;chr11:615942..615957,-!p1@IRF7!1.86!640.40!IRF7;;chr11:65430554..65430579,-!p3@RELA!1.84!168.81!RELA;;chr6:106534230..106534254,+!p2@PRDM1!1.84!163.69!PRDM1;;chr2:68592394..68592405,+!p2@PLEK!1.83!66.60!PLEK;;chr16:31885093..31885165,+!p1@ZNF267!1.80!894.00!ZNF267;;chr10:64018918..64018936,+!p2@ZNF365!1.80!62.25!ZNF365;;chr10:35484090..35484104,+!p6@CREM!1.79!60.97!CREM;;chr11:47400032..47400043,-!p5@SPI1!1.79!60.20!SPI1;;chr11:65430535..65430549,-!p4@RELA!1.78!67.88!RELA;;chr1:221052776..221052799,+!p1@HLX!1.77!100.67!HLX;;chr16:79634624..79634642,-!p1@MAF!1.76!210.56!MAF;;chr14:35872453..35872485,-!p2@NFKBIA!1.75!131.41!NFKBIA;;chr2:231084639..231084654,-!p2@SP110!1.73!85.30!SP110;;chr10:31288398..31288455,-!p2@ZNF438!1.73!60.71!ZNF438;;chr19:33793430..33793447,-!p1@CEBPA!1.72!205.70!CEBPA;;chr1:212782094..212782109,+!p1@ATF3!1.71!1287.72!ATF3;;chr22:38597987..38598021,+!p2@MAFF!1.70!285.88!MAFF;;chr12:54778351..54778378,-!p6@ZNF385A!1.70!49.18!ZNF385A;;chr19:45971246..45971265,+!p1@FOSB!1.69!844.05!FOSB;;chr2:97202480..97202499,+!p1@ARID5A!1.69!456.48!ARID5A;;chr19:50432132..50432217,+!p2@ATF5!1.69!57.12!ATF5;;chr14:75988831..75988847,+!p2@BATF!1.68!46.88!BATF;;chr12:72056749..72056767,+!p6@THAP2!1.66!49.18!THAP2;;chr6:391743..391759,+!p1@IRF4!1.66!44.57!IRF4;;chr14:75988771..75988826,+!p1@BATF!1.65!57.12!BATF;;chrX:153305787..153305807,-!p3@MECP2!1.63!41.75!MECP2;;chr2:145277640..145277771,-!p1@ZEB2!1.61!501.56!ZEB2;;chr2:145275162..145275202,-!p2@ZEB2!1.61!225.93!ZEB2;;chr21:36421535..36421610,-!p2@RUNX1!1.58!128.08!RUNX1;;chr21:30671690..30671762,+!p2@BACH1!1.58!122.44!BACH1;;chr14:35873947..35873965,-!p1@NFKBIA!1.57!2161.48!NFKBIA;;chr19:36391434..36391450,-!p1@NFKBID!1.57!68.91!NFKBID;;chr2:157189180..157189290,-!p1@NR4A2!1.56!176.24!NR4A2;;chr1:158979872..158979898,+!p3@IFI16!1.55!103.49!IFI16;;chr1:158985493..158985535,+!p4@IFI16!1.55!52.26!IFI16;;chr10:31288370..31288393,-!p3@ZNF438!1.55!34.84!ZNF438;;chr10:51572408..51572454,+!p3@NCOA4!1.54!189.05!NCOA4;;chr8:22550982..22550999,-!p1@EGR3!1.54!91.45!EGR3;;chr12:72056800..72056834,+!p1@THAP2!1.53!43.80!THAP2;;chr11:615570..615721,-!p2@IRF7!1.52!62.25!IRF7;;chr6:144385698..144385742,-!p2@PLAGL1!1.52!38.94!PLAGL1;;chr21:30671235..30671253,+!p1@BACH1!1.51!383.22!BACH1;;chr16:79634595..79634620,-!p2@MAF!1.51!56.36!MAF;;chr1:221052733..221052749,+!p2@HLX!1.51!39.96!HLX;;chr11:47400045..47400060,-!p6@SPI1!1.51!31.51!SPI1;;chr12:48298765..48298783,-!p2@VDR!1.50!62.25!VDR;;chrX:129244454..129244488,-!p1@ELF4!1.49!209.54!ELF4;;chr10:51572339..51572376,+!p4@NCOA4!1.49!66.09!NCOA4;;chr10:35484804..35484902,+!p2@CREM!1.48!108.87!CREM;;chr12:72056773..72056796,+!p3@THAP2!1.48!37.40!THAP2;;chr3:12329397..12329433,+!p2@PPARG!1.47!63.78!PPARG;;chr21:34398234..34398250,+!p1@OLIG2!1.47!28.18!OLIG2;;chr4:103422499..103422632,+!p1@NFKB1!1.46!560.22!NFKB1;;chr7:50344289..50344323,+!p1@IKZF1!1.46!27.92!IKZF1;;chr4:185395590..185395627,-!p3@IRF2!1.45!33.30!IRF2;;chr7:150946376..150946389,-!p6@SMARCD3!1.44!26.38!SMARCD3;;chr19:45251395..45251432,+!p8@BCL3!1.43!25.62!BCL3;;chr12:11802753..11802834,+!p2@ETV6!1.42!120.40!ETV6;;chr9:110250697..110250738,-!p2@KLF4!1.41!28.95!KLF4;;chr9:110252035..110252057,-!p1@KLF4!1.40!368.87!KLF4;;chr22:38598086..38598105,+!p1@MAFF!1.40!250.01!MAFF;;chr21:36260343..36260402,-!p6@RUNX1!1.40!37.91!RUNX1;;chr2:231090471..231090504,+!p2@SP140!1.40!24.34!SP140;;chr12:56415246..56415286,+!p2@IKZF4!1.40!24.08!IKZF4;;chr6:106535598..106535637,+!p7@PRDM1!1.39!23.82!PRDM1;;chr1:25256439..25256476,-!p3@RUNX3!1.39!23.31!RUNX3;;chr10:104155480..104155534,+!p2@NFKB2!1.38!145.76!NFKB2;;chr11:47399920..47399931,-!p7@SPI1!1.38!22.80!SPI1;;chr20:48599506..48599526,+!p1@SNAI1!1.37!138.58!SNAI1;;chr9:102584159..102584174,+!p2@NR4A3!1.37!40.22!NR4A3;;chr4:185395633..185395651,-!p2@IRF2!1.37!35.61!IRF2;;chr3:39195037..39195069,-!p2@CSRNP1!1.36!132.18!CSRNP1;;chr17:38497662..38497713,+!p4@RARA!1.36!25.10!RARA;;chr13:41593425..41593480,-!p1@ELF1!1.35!133.46!ELF1;;chr14:35872962..35873025,-!p3@NFKBIA!1.35!53.03!NFKBIA;;chr2:61108695..61108753,+!p1@REL!1.34!138.07!REL;;chr18:3449720..3449749,+!p2@TGIF1!1.34!44.06!TGIF1;;chr21:36260325..36260341,-!p14@RUNX1!1.34!21.01!RUNX1;;chr20:48807351..48807384,+!p1@CEBPB!1.33!2004.97!CEBPB;;chr19:45252008..45252024,+!p2@BCL3!1.33!65.32!BCL3;;chr4:106068026..106068084,+!p1@TET2!1.31!168.30!TET2;;chrX:129244430..129244442,-!p5@ELF4!1.31!19.21!ELF4;;chr10:104154246..104154347,+!p3@NFKB2!1.29!109.64!NFKB2;;chr3:187463179..187463201,-!p2@BCL6!1.29!74.54!BCL6;;chr8:116681123..116681143,-!p4@TRPS1!1.29!35.09!TRPS1;;chr3:126191157..126191171,-!p4@ZXDC!1.29!18.70!ZXDC;;chr9:129567282..129567353,+!p1@ZBTB43!1.28!229.52!ZBTB43;;chr2:191885737..191885750,-!p4@STAT1!1.28!18.19!STAT1;;chr19:45250948..45250998,+!p3@BCL3!1.27!44.06!BCL3;;chr16:89787973..89788001,+!p3@ZNF276!1.27!33.56!ZNF276;;chr9:102584128..102584144,+!p3@NR4A3!1.27!33.56!NR4A3;;chr3:39195139..39195150,-!p3@CSRNP1!1.27!22.54!CSRNP1;;chr12:48298785..48298828,-!p1@VDR!1.26!88.89!VDR;;chr19:19496539..19496576,+!p8@GATAD2A!1.26!29.97!GATAD2A;;chr6:44233252..44233296,-!p1@NFKBIE!1.25!161.89!NFKBIE;;chr21:36260980..36261011,-!p1@RUNX1!1.24!462.37!RUNX1;;chr2:231084820..231084836,-!p5@SP110!1.24!18.96!SP110;;chr16:79634581..79634592,-!p4@MAF!1.24!16.39!MAF;;chr1:37940170..37940190,+!p1@ZC3H12A!1.23!191.10!ZC3H12A;;chr7:17338266..17338282,+!p1@AHR!1.23!168.04!AHR;;chr2:145277882..145277967,-!p3@ZEB2!1.23!27.67!ZEB2;;chr18:3449618..3449634,+!p13@TGIF1!1.23!19.98!TGIF1;;chr1:158979922..158979933,+!p13@IFI16!1.23!16.14!IFI16;;chr2:231090433..231090469,+!p1@SP140!1.23!16.14!SP140;;chr1:221054922..221054933,+!p16@HLX!1.23!15.88!HLX;;chr21:30672433..30672464,+!p6@BACH1!1.23!15.88!BACH1;;chr12:52445218..52445237,+!p1@NR4A1!1.22!193.66!NR4A1;;chr6:15246200..15246214,+!p2@JARID2!1.22!42.78!JARID2;;chr2:70314240..70314256,+!p4@PCBP1!1.22!32.28!PCBP1;;chr10:64576035..64576046,-!p2@EGR2!1.21!15.37!EGR2;;chr10:3827371..3827386,-!p2@KLF6!1.20!122.96!KLF6;;chr6:126240380..126240430,+!p2@NCOA7!1.20!38.68!NCOA7;;chr22:38598057..38598071,+!p3@MAFF!1.20!34.84!MAFF;;chr16:3285119..3285133,-!p2@ZNF200!1.20!29.46!ZNF200;;chr7:149470641..149470694,-!p1@ZNF467!1.19!64.81!ZNF467;;chr5:71803177..71803255,-!p1@ZNF366!1.19!14.60!ZNF366;;chr21:30672734..30672748,+!p11@BACH1!1.19!14.34!BACH1;;chr3:101568349..101568365,+!p1@NFKBIZ!1.18!730.83!NFKBIZ;;chr18:3449586..3449617,+!p8@TGIF1!1.18!22.54!TGIF1;;chr6:126240442..126240459,+!p4@NCOA7!1.18!17.93!NCOA7;;chr7:28725740..28725778,+!p1@CREB5!1.17!121.93!CREB5;;chr1:38325227..38325246,-!p2@MTF1!1.17!18.96!MTF1;;chr6:126240463..126240489,+!p6@NCOA7!1.17!15.37!NCOA7;;chr21:40177845..40177863,+!p1@ETS2!1.16!783.85!ETS2;;chr6:12012170..12012245,+!p1@HIVEP1!1.16!67.88!HIVEP1;;chr17:79885537..79885554,-!p2@MAFG!1.16!25.62!MAFG;;chr2:70167296..70167306,+!p3@MXD1!1.16!20.75!MXD1;;chr14:35872926..35872951,-!p4@NFKBIA!1.16!19.21!NFKBIA;;chr14:35872494..35872511,-!p5@NFKBIA!1.16!17.93!NFKBIA;;chr3:187455634..187455651,-!p7@BCL6!1.16!13.58!BCL6;;chr1:158979792..158979814,+!p2@IFI16!1.15!125.77!IFI16;;chr5:142782823..142782854,-!p3@NR3C1!1.15!18.70!NR3C1;;chr1:221052994..221053008,+!p6@HLX!1.15!15.63!HLX;;chr2:231084659..231084721,-!p1@SP110!1.14!298.17!SP110;;chr10:104155455..104155479,+!p1@NFKB2!1.14!185.20!NFKB2;;chr3:150126101..150126118,+!p6@TSC22D2!1.14!20.75!TSC22D2;;chr1:221052840..221052875,+!p4@HLX!1.14!15.37!HLX;;chr3:187455680..187455700,-!p4@BCL6!1.14!12.81!BCL6;;chrX:153305741..153305753,-!p4@MECP2!1.14!12.81!MECP2;;chr8:71316428..71316459,-!p2@NCOA2!1.13!21.01!NCOA2;;chr2:238600998..238601013,+!p5@LRRFIP1!1.13!12.55!LRRFIP1;;chr1:8484007..8484061,-!p13@RERE!1.12!15.63!RERE;;chr10:64575812..64575824,-!p4@EGR2!1.12!12.30!EGR2;;chr17:38497715..38497734,+!p8@RARA!1.12!12.30!RARA;;chr17:38474489..38474548,+!p1@RARA!1.11!375.79!RARA;;chr1:221053049..221053075,+!p3@HLX!1.11!20.75!HLX;;chr2:192015701..192015743,-!p1@STAT4!1.11!16.39!STAT4;;chr3:12330560..12330579,+!p1@PPARG!1.11!13.58!PPARG;;chr3:39195075..39195088,-!p1@CSRNP1!1.10!73.26!CSRNP1;;chr19:42636586..42636607,-!p1@POU2F2!1.10!32.02!POU2F2;;chr20:48807456..48807475,+!p3@CEBPB!1.10!22.54!CEBPB;;chr12:11802690..11802704,+!p4@ETV6!1.10!16.65!ETV6;;chr7:115670792..115670797,-!p2@TFEC!1.10!11.53!TFEC;;chr19:54058073..54058088,+!p1@ZNF331!1.10!11.53!ZNF331;;chr3:170075436..170075520,+!p1@SKIL!1.09!243.10!SKIL;;chr2:238600933..238600985,+!p3@LRRFIP1!1.09!60.97!LRRFIP1;;chr18:3448455..3448480,+!p5@TGIF1!1.09!20.75!TGIF1;;chr2:145271342..145271377,-!p5@ZEB2!1.09!11.27!ZEB2;;chr2:70142189..70142223,+!p2@MXD1!1.08!79.41!MXD1;;chr9:102584262..102584276,+!p1@NR4A3!1.08!24.59!NR4A3;;chr9:3526360..3526421,-!p5@RFX3!1.08!20.49!RFX3;;chr12:54785074..54785122,-!p2@ZNF385A!1.08!17.16!ZNF385A;;chr4:185395191..185395226,-!p4@IRF2!1.08!15.63!IRF2;;chr3:107318229..107318239,+!p17@BBX!1.08!11.01!BB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| |expression_enrichment_score=chr2:68592406..68592424,+!p1@PLEK!3.57!3718.43!PLEK;;chr16:85932760..85932775,+!p1@IRF8!3.09!1235.21!IRF8;;chr11:47400078..47400106,-!p1@SPI1!2.72!527.95!SPI1;;chr10:64576105..64576133,-!p1@EGR2!2.63!842.00!EGR2;;chr10:35484053..35484076,+!p1@CREM!2.55!849.43!CREM;;chr12:54778471..54778528,-!p1@ZNF385A!2.50!317.38!ZNF385A;;chr7:115670804..115670825,-!p1@TFEC!2.43!266.92!TFEC;;chr11:47399947..47399961,-!p3@SPI1!2.26!181.62!SPI1;;chr11:64764435..64764449,-!p1@BATF2!2.18!202.37!BATF2;;chr7:128577972..128578047,+!p1@IRF5!2.15!217.74!IRF5;;chr6:36355431..36355466,-!p1@ETV7!2.12!130.39!ETV7;;chr6:106534192..106534224,+!p1@PRDM1!2.11!346.33!PRDM1;;chr11:47400062..47400077,-!p2@SPI1!2.06!115.02!SPI1;;chr21:34442439..34442455,+!p1@OLIG1!2.05!110.15!OLIG1;;chr2:70142232..70142251,+!p1@MXD1!2.02!555.10!MXD1;;chr17:45810594..45810608,+!p1@TBX21!1.98!93.50!TBX21;;chr5:131826457..131826514,-!p1@IRF1!1.97!3358.78!IRF1;;chr20:39317868..39317884,-!p1@MAFB!1.97!1029.77!MAFB;;chr1:25256756..25256774,-!p1@RUNX3!1.96!165.74!RUNX3;;chr21:36260295..36260310,-!p3@RUNX1!1.93!131.41!RUNX1;;chr11:47399996..47400014,-!p4@SPI1!1.89!76.08!SPI1;;chr11:615942..615957,-!p1@IRF7!1.86!640.40!IRF7;;chr11:65430554..65430579,-!p3@RELA!1.84!168.81!RELA;;chr6:106534230..106534254,+!p2@PRDM1!1.84!163.69!PRDM1;;chr2:68592394..68592405,+!p2@PLEK!1.83!66.60!PLEK;;chr16:31885093..31885165,+!p1@ZNF267!1.80!894.00!ZNF267;;chr10:64018918..64018936,+!p2@ZNF365!1.80!62.25!ZNF365;;chr10:35484090..35484104,+!p6@CREM!1.79!60.97!CREM;;chr11:47400032..47400043,-!p5@SPI1!1.79!60.20!SPI1;;chr11:65430535..65430549,-!p4@RELA!1.78!67.88!RELA;;chr1:221052776..221052799,+!p1@HLX!1.77!100.67!HLX;;chr16:79634624..79634642,-!p1@MAF!1.76!210.56!MAF;;chr14:35872453..35872485,-!p2@NFKBIA!1.75!131.41!NFKBIA;;chr2:231084639..231084654,-!p2@SP110!1.73!85.30!SP110;;chr10:31288398..31288455,-!p2@ZNF438!1.73!60.71!ZNF438;;chr19:33793430..33793447,-!p1@CEBPA!1.72!205.70!CEBPA;;chr1:212782094..212782109,+!p1@ATF3!1.71!1287.72!ATF3;;chr22:38597987..38598021,+!p2@MAFF!1.70!285.88!MAFF;;chr12:54778351..54778378,-!p6@ZNF385A!1.70!49.18!ZNF385A;;chr19:45971246..45971265,+!p1@FOSB!1.69!844.05!FOSB;;chr2:97202480..97202499,+!p1@ARID5A!1.69!456.48!ARID5A;;chr19:50432132..50432217,+!p2@ATF5!1.69!57.12!ATF5;;chr14:75988831..75988847,+!p2@BATF!1.68!46.88!BATF;;chr12:72056749..72056767,+!p6@THAP2!1.66!49.18!THAP2;;chr6:391743..391759,+!p1@IRF4!1.66!44.57!IRF4;;chr14:75988771..75988826,+!p1@BATF!1.65!57.12!BATF;;chrX:153305787..153305807,-!p3@MECP2!1.63!41.75!MECP2;;chr2:145277640..145277771,-!p1@ZEB2!1.61!501.56!ZEB2;;chr2:145275162..145275202,-!p2@ZEB2!1.61!225.93!ZEB2;;chr21:36421535..36421610,-!p2@RUNX1!1.58!128.08!RUNX1;;chr21:30671690..30671762,+!p2@BACH1!1.58!122.44!BACH1;;chr14:35873947..35873965,-!p1@NFKBIA!1.57!2161.48!NFKBIA;;chr19:36391434..36391450,-!p1@NFKBID!1.57!68.91!NFKBID;;chr2:157189180..157189290,-!p1@NR4A2!1.56!176.24!NR4A2;;chr1:158979872..158979898,+!p3@IFI16!1.55!103.49!IFI16;;chr1:158985493..158985535,+!p4@IFI16!1.55!52.26!IFI16;;chr10:31288370..31288393,-!p3@ZNF438!1.55!34.84!ZNF438;;chr10:51572408..51572454,+!p3@NCOA4!1.54!189.05!NCOA4;;chr8:22550982..22550999,-!p1@EGR3!1.54!91.45!EGR3;;chr12:72056800..72056834,+!p1@THAP2!1.53!43.80!THAP2;;chr11:615570..615721,-!p2@IRF7!1.52!62.25!IRF7;;chr6:144385698..144385742,-!p2@PLAGL1!1.52!38.94!PLAGL1;;chr21:30671235..30671253,+!p1@BACH1!1.51!383.22!BACH1;;chr16:79634595..79634620,-!p2@MAF!1.51!56.36!MAF;;chr1:221052733..221052749,+!p2@HLX!1.51!39.96!HLX;;chr11:47400045..47400060,-!p6@SPI1!1.51!31.51!SPI1;;chr12:48298765..48298783,-!p2@VDR!1.50!62.25!VDR;;chrX:129244454..129244488,-!p1@ELF4!1.49!209.54!ELF4;;chr10:51572339..51572376,+!p4@NCOA4!1.49!66.09!NCOA4;;chr10:35484804..35484902,+!p2@CREM!1.48!108.87!CREM;;chr12:72056773..72056796,+!p3@THAP2!1.48!37.40!THAP2;;chr3:12329397..12329433,+!p2@PPARG!1.47!63.78!PPARG;;chr21:34398234..34398250,+!p1@OLIG2!1.47!28.18!OLIG2;;chr4:103422499..103422632,+!p1@NFKB1!1.46!560.22!NFKB1;;chr7:50344289..50344323,+!p1@IKZF1!1.46!27.92!IKZF1;;chr4:185395590..185395627,-!p3@IRF2!1.45!33.30!IRF2;;chr7:150946376..150946389,-!p6@SMARCD3!1.44!26.38!SMARCD3;;chr19:45251395..45251432,+!p8@BCL3!1.43!25.62!BCL3;;chr12:11802753..11802834,+!p2@ETV6!1.42!120.40!ETV6;;chr9:110250697..110250738,-!p2@KLF4!1.41!28.95!KLF4;;chr9:110252035..110252057,-!p1@KLF4!1.40!368.87!KLF4;;chr22:38598086..38598105,+!p1@MAFF!1.40!250.01!MAFF;;chr21:36260343..36260402,-!p6@RUNX1!1.40!37.91!RUNX1;;chr2:231090471..231090504,+!p2@SP140!1.40!24.34!SP140;;chr12:56415246..56415286,+!p2@IKZF4!1.40!24.08!IKZF4;;chr6:106535598..106535637,+!p7@PRDM1!1.39!23.82!PRDM1;;chr1:25256439..25256476,-!p3@RUNX3!1.39!23.31!RUNX3;;chr10:104155480..104155534,+!p2@NFKB2!1.38!145.76!NFKB2;;chr11:47399920..47399931,-!p7@SPI1!1.38!22.80!SPI1;;chr20:48599506..48599526,+!p1@SNAI1!1.37!138.58!SNAI1;;chr9:102584159..102584174,+!p2@NR4A3!1.37!40.22!NR4A3;;chr4:185395633..185395651,-!p2@IRF2!1.37!35.61!IRF2;;chr3:39195037..39195069,-!p2@CSRNP1!1.36!132.18!CSRNP1;;chr17:38497662..38497713,+!p4@RARA!1.36!25.10!RARA;;chr13:41593425..41593480,-!p1@ELF1!1.35!133.46!ELF1;;chr14:35872962..35873025,-!p3@NFKBIA!1.35!53.03!NFKBIA;;chr2:61108695..61108753,+!p1@REL!1.34!138.07!REL;;chr18:3449720..3449749,+!p2@TGIF1!1.34!44.06!TGIF1;;chr21:36260325..36260341,-!p14@RUNX1!1.34!21.01!RUNX1;;chr20:48807351..48807384,+!p1@CEBPB!1.33!2004.97!CEBPB;;chr19:45252008..45252024,+!p2@BCL3!1.33!65.32!BCL3;;chr4:106068026..106068084,+!p1@TET2!1.31!168.30!TET2;;chrX:129244430..129244442,-!p5@ELF4!1.31!19.21!ELF4;;chr10:104154246..104154347,+!p3@NFKB2!1.29!109.64!NFKB2;;chr3:187463179..187463201,-!p2@BCL6!1.29!74.54!BCL6;;chr8:116681123..116681143,-!p4@TRPS1!1.29!35.09!TRPS1;;chr3:126191157..126191171,-!p4@ZXDC!1.29!18.70!ZXDC;;chr9:129567282..129567353,+!p1@ZBTB43!1.28!229.52!ZBTB43;;chr2:191885737..191885750,-!p4@STAT1!1.28!18.19!STAT1;;chr19:45250948..45250998,+!p3@BCL3!1.27!44.06!BCL3;;chr16:89787973..89788001,+!p3@ZNF276!1.27!33.56!ZNF276;;chr9:102584128..102584144,+!p3@NR4A3!1.27!33.56!NR4A3;;chr3:39195139..39195150,-!p3@CSRNP1!1.27!22.54!CSRNP1;;chr12:48298785..48298828,-!p1@VDR!1.26!88.89!VDR;;chr19:19496539..19496576,+!p8@GATAD2A!1.26!29.97!GATAD2A;;chr6:44233252..44233296,-!p1@NFKBIE!1.25!161.89!NFKBIE;;chr21:36260980..36261011,-!p1@RUNX1!1.24!462.37!RUNX1;;chr2:231084820..231084836,-!p5@SP110!1.24!18.96!SP110;;chr16:79634581..79634592,-!p4@MAF!1.24!16.39!MAF;;chr1:37940170..37940190,+!p1@ZC3H12A!1.23!191.10!ZC3H12A;;chr7:17338266..17338282,+!p1@AHR!1.23!168.04!AHR;;chr2:145277882..145277967,-!p3@ZEB2!1.23!27.67!ZEB2;;chr18:3449618..3449634,+!p13@TGIF1!1.23!19.98!TGIF1;;chr1:158979922..158979933,+!p13@IFI16!1.23!16.14!IFI16;;chr2:231090433..231090469,+!p1@SP140!1.23!16.14!SP140;;chr1:221054922..221054933,+!p16@HLX!1.23!15.88!HLX;;chr21:30672433..30672464,+!p6@BACH1!1.23!15.88!BACH1;;chr12:52445218..52445237,+!p1@NR4A1!1.22!193.66!NR4A1;;chr6:15246200..15246214,+!p2@JARID2!1.22!42.78!JARID2;;chr2:70314240..70314256,+!p4@PCBP1!1.22!32.28!PCBP1;;chr10:64576035..64576046,-!p2@EGR2!1.21!15.37!EGR2;;chr10:3827371..3827386,-!p2@KLF6!1.20!122.96!KLF6;;chr6:126240380..126240430,+!p2@NCOA7!1.20!38.68!NCOA7;;chr22:38598057..38598071,+!p3@MAFF!1.20!34.84!MAFF;;chr16:3285119..3285133,-!p2@ZNF200!1.20!29.46!ZNF200;;chr7:149470641..149470694,-!p1@ZNF467!1.19!64.81!ZNF467;;chr5:71803177..71803255,-!p1@ZNF366!1.19!14.60!ZNF366;;chr21:30672734..30672748,+!p11@BACH1!1.19!14.34!BACH1;;chr3:101568349..101568365,+!p1@NFKBIZ!1.18!730.83!NFKBIZ;;chr18:3449586..3449617,+!p8@TGIF1!1.18!22.54!TGIF1;;chr6:126240442..126240459,+!p4@NCOA7!1.18!17.93!NCOA7;;chr7:28725740..28725778,+!p1@CREB5!1.17!121.93!CREB5;;chr1:38325227..38325246,-!p2@MTF1!1.17!18.96!MTF1;;chr6:126240463..126240489,+!p6@NCOA7!1.17!15.37!NCOA7;;chr21:40177845..40177863,+!p1@ETS2!1.16!783.85!ETS2;;chr6:12012170..12012245,+!p1@HIVEP1!1.16!67.88!HIVEP1;;chr17:79885537..79885554,-!p2@MAFG!1.16!25.62!MAFG;;chr2:70167296..70167306,+!p3@MXD1!1.16!20.75!MXD1;;chr14:35872926..35872951,-!p4@NFKBIA!1.16!19.21!NFKBIA;;chr14:35872494..35872511,-!p5@NFKBIA!1.16!17.93!NFKBIA;;chr3:187455634..187455651,-!p7@BCL6!1.16!13.58!BCL6;;chr1:158979792..158979814,+!p2@IFI16!1.15!125.77!IFI16;;chr5:142782823..142782854,-!p3@NR3C1!1.15!18.70!NR3C1;;chr1:221052994..221053008,+!p6@HLX!1.15!15.63!HLX;;chr2:231084659..231084721,-!p1@SP110!1.14!298.17!SP110;;chr10:104155455..104155479,+!p1@NFKB2!1.14!185.20!NFKB2;;chr3:150126101..150126118,+!p6@TSC22D2!1.14!20.75!TSC22D2;;chr1:221052840..221052875,+!p4@HLX!1.14!15.37!HLX;;chr3:187455680..187455700,-!p4@BCL6!1.14!12.81!BCL6;;chrX:153305741..153305753,-!p4@MECP2!1.14!12.81!MECP2;;chr8:71316428..71316459,-!p2@NCOA2!1.13!21.01!NCOA2;;chr2:238600998..238601013,+!p5@LRRFIP1!1.13!12.55!LRRFIP1;;chr1:8484007..8484061,-!p13@RERE!1.12!15.63!RERE;;chr10:64575812..64575824,-!p4@EGR2!1.12!12.30!EGR2;;chr17:38497715..38497734,+!p8@RARA!1.12!12.30!RARA;;chr17:38474489..38474548,+!p1@RARA!1.11!375.79!RARA;;chr1:221053049..221053075,+!p3@HLX!1.11!20.75!HLX;;chr2:192015701..192015743,-!p1@STAT4!1.11!16.39!STAT4;;chr3:12330560..12330579,+!p1@PPARG!1.11!13.58!PPARG;;chr3:39195075..39195088,-!p1@CSRNP1!1.10!73.26!CSRNP1;;chr19:42636586..42636607,-!p1@POU2F2!1.10!32.02!POU2F2;;chr20:48807456..48807475,+!p3@CEBPB!1.10!22.54!CEBPB;;chr12:11802690..11802704,+!p4@ETV6!1.10!16.65!ETV6;;chr7:115670792..115670797,-!p2@TFEC!1.10!11.53!TFEC;;chr19:54058073..54058088,+!p1@ZNF331!1.10!11.53!ZNF331;;chr3:170075436..170075520,+!p1@SKIL!1.09!243.10!SKIL;;chr2:238600933..238600985,+!p3@LRRFIP1!1.09!60.97!LRRFIP1;;chr18:3448455..3448480,+!p5@TGIF1!1.09!20.75!TGIF1;;chr2:145271342..145271377,-!p5@ZEB2!1.09!11.27!ZEB2;;chr2:70142189..70142223,+!p2@MXD1!1.08!79.41!MXD1;;chr9:102584262..102584276,+!p1@NR4A3!1.08!24.59!NR4A3;;chr9:3526360..3526421,-!p5@RFX3!1.08!20.49!RFX3;;chr12:54785074..54785122,-!p2@ZNF385A!1.08!17.16!ZNF385A;;chr4:185395191..185395226,-!p4@IRF2!1.08!15.63!IRF2;;chr3:107318229..107318239,+!p17@BBX!1.08!11.01!BB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| ||
|fantom_cat=http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000222;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000234;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000576;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000738;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000763;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000766;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000860;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000988;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0002193;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0002390;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0002405 | |||
|ffid_belonging_in_development=CL:0000049,CL:0000134,CL:0002057 | |||
|fonse_cell_line= | |fonse_cell_line= | ||
|fonse_cell_line_closure= | |fonse_cell_line_closure= | ||
Line 35: | Line 42: | ||
|fonse_treatment_closure=FF:0000625,FF:0000628,FF:0011103,FF:11870-125B7 | |fonse_treatment_closure=FF:0000625,FF:0000628,FF:0011103,FF:11870-125B7 | ||
|has_quality= | |has_quality= | ||
|hg19bam=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/CD14%252b%2520monocytes%2520-%2520treated%2520with%2520BCG%252c%2520donor2.CNhs13475.11870-125B7.hg19.nobarcode.bam | |||
|hg19ctss=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/CD14%252b%2520monocytes%2520-%2520treated%2520with%2520BCG%252c%2520donor2.CNhs13475.11870-125B7.hg19.ctss.bed.gz | |||
|hg19fasta=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/CD14%252b%2520monocytes%2520-%2520treated%2520with%2520BCG%252c%2520donor2.CNhs13475.11870-125B7.hg19.nobarcode.rdna.fa.gz | |||
|hg38bam=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.primary_cell.hCAGE/CD14%252b%2520monocytes%2520-%2520treated%2520with%2520BCG%252c%2520donor2.CNhs13475.11870-125B7.hg38.nobarcode.bam | |||
|hg38ctss=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.primary_cell.hCAGE/CD14%252b%2520monocytes%2520-%2520treated%2520with%2520BCG%252c%2520donor2.CNhs13475.11870-125B7.hg38.nobarcode.ctss.bed.gz | |||
|id=FF:11870-125B7 | |id=FF:11870-125B7 | ||
|is_a=EFO:0002091;;FF: | |is_a=EFO:0002091;;FF:0011103 | ||
|is_obsolete= | |||
|library_id=CNhs13475 | |||
|library_id_phase_based=2:CNhs13475 | |||
|microRNAs= | |||
|microRNAs_nn= | |||
|microRNAs_nonnovel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer/#/human#cage;sample;11870 | |||
|microRNAs_novel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer_novel/#/human#cage;sample;11870 | |||
|name=CD14+ monocytes - treated with BCG, donor2 | |name=CD14+ monocytes - treated with BCG, donor2 | ||
|namespace= | |namespace= | ||
Line 42: | Line 61: | ||
|profile_cagescan=,,, | |profile_cagescan=,,, | ||
|profile_hcage=CNhs13475,LSID1024,release012,COMPLETED | |profile_hcage=CNhs13475,LSID1024,release012,COMPLETED | ||
|profile_rnaseq= | |profile_rnaseq= | ||
|profile_srnaseq=,,, | |profile_srnaseq=,,, | ||
|refex=http://refex.dbcls.jp/genelist.php?lang | |||
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|rna_box=125 | |rna_box=125 | ||
|rna_catalog_number= | |rna_catalog_number= | ||
Line 57: | Line 79: | ||
|rna_weight_ug=2.851875 | |rna_weight_ug=2.851875 | ||
|sample_age=51 | |sample_age=51 | ||
|sample_category=primary cells | |||
|sample_cell_catalog= | |sample_cell_catalog= | ||
|sample_cell_line= | |sample_cell_line= | ||
Line 77: | Line 100: | ||
|sample_tissue= | |sample_tissue= | ||
|top_motifs=STAT2,4,6:5.6873180702;STAT5{A,B}:5.0760598675;NFE2:4.65898972643;FOSL2:4.51699774424;IRF7:4.37666428933;STAT1,3:4.35731913977;NFE2L2:4.30464233454;CEBPA,B_DDIT3:4.25343635409;IRF1,2:4.04942952684;BACH2:4.04449793903;FOS_FOS{B,L1}_JUN{B,D}:3.93877530274;PAX2:3.81814875974;HLF:3.75394877891;SPIB:3.15935565633;NANOG{mouse}:2.91180948729;SREBF1,2:2.88191990142;SPI1:2.87026886345;ETS1,2:2.6609524874;NFKB1_REL_RELA:2.6520852099;NFIL3:2.61402352228;NR1H4:2.59670030543;FOXP3:2.45582888747;DMAP1_NCOR{1,2}_SMARC:2.43026700202;EP300:2.42204088476;ATF4:2.30299643723;ATF5_CREB3:2.30063116651;NFE2L1:2.18351912136;ATF6:2.16998033433;RUNX1..3:1.96582741093;FOXN1:1.93005147584;HSF1,2:1.87487964078;CREB1:1.86743276206;JUN:1.71762497471;ATF2:1.59887352137;TGIF1:1.54147464543;NFATC1..3:1.45861019126;ELF1,2,4:1.45519624723;ALX4:1.32733870701;HIF1A:1.28042868529;CDX1,2,4:1.27045570132;PDX1:1.23989793587;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:1.20438362811;MAFB:1.10730731647;PAX8:1.06146334655;XBP1:0.879268800458;GLI1..3:0.811849149249;PAX3,7:0.706019063101;ZBTB16:0.65421279013;PPARG:0.632979141294;RXRA_VDR{dimer}:0.597746605104;TLX2:0.491696046027;SRF:0.480293920921;BPTF:0.378394826692;HOX{A5,B5}:0.362230512703;NR6A1:0.359261286569;TFCP2:0.2706289965;FOXD3:0.254445309164;PRDM1:0.240655049559;HMGA1,2:0.213372334137;HMX1:0.173184400016;ESRRA:0.152242075381;AHR_ARNT_ARNT2:0.132044413194;TBP:0.131300247182;SMAD1..7,9:0.10401074364;HBP1_HMGB_SSRP1_UBTF:0.0903711470538;GATA4:0.0609816963918;NANOG:0.0308285279103;SPZ1:-0.0340430392294;IKZF1:-0.0537015508883;ESR1:-0.119762955786;EN1,2:-0.129168588362;HOXA9_MEIS1:-0.147854964283;MEF2{A,B,C,D}:-0.158855206145;PITX1..3:-0.189901984093;PAX4:-0.236961034429;RBPJ:-0.285108842133;EGR1..3:-0.2898250058;FOXO1,3,4:-0.293444446195;FOXM1:-0.301112159967;IKZF2:-0.303323878275;VSX1,2:-0.334305959497;RFX2..5_RFXANK_RFXAP:-0.349683894424;HES1:-0.363505246943;FOX{D1,D2}:-0.384115098271;MYB:-0.431102294032;OCT4_SOX2{dimer}:-0.469608004519;POU2F1..3:-0.62755594224;NKX6-1,2:-0.667491822794;FOXL1:-0.700410062435;MZF1:-0.712075369692;RORA:-0.746490856563;FOXP1:-0.825871659475;HOX{A6,A7,B6,B7}:-0.829429625931;FOX{F1,F2,J1}:-0.858882804135;TFAP4:-0.859939776446;POU5F1:-0.889720753217;DBP:-0.912120662464;RXR{A,B,G}:-0.947159205991;ALX1:-0.950573598829;PAX1,9:-0.950948549814;NHLH1,2:-0.955030893442;TAL1_TCF{3,4,12}:-1.00253623467;SOX2:-1.01374005283;HNF4A_NR2F1,2:-1.01398211579;REST:-1.0313278966;PAX6:-1.04660947468;HNF1A:-1.08437701441;MED-1{core}:-1.12999793335;NKX2-2,8:-1.13289677107;MYFfamily:-1.14624260247;ZNF238:-1.19868210379;PRRX1,2:-1.21835112174;POU6F1:-1.22304536787;MTE{core}:-1.23061295819;RXR{A,B,G}_{NR1H2,PPAR}dimers:-1.25476172027;NKX3-2:-1.30726290505;NR3C1:-1.32733655755;NKX3-1:-1.39151050107;SOX5:-1.40585256815;GCM1,2:-1.41576984373;GZF1:-1.45047621508;RREB1:-1.4516845404;GATA6:-1.50029763425;ZBTB6:-1.50462194843;TFAP2B:-1.51169339269;PATZ1:-1.52066178947;CUX2:-1.547762325;MTF1:-1.55945446376;NFIX:-1.59383003143;ZFP161:-1.60716535541;NKX2-1,4:-1.61257058626;NKX2-3_NKX2-5:-1.62305034824;TEAD1:-1.63264209622;XCPE1{core}:-1.64580942982;E2F1..5:-1.66828898113;MYOD1:-1.67059816496;GTF2A1,2:-1.67177462065;TFDP1:-1.68599113809;CDC5L:-1.70862361806;POU3F1..4:-1.73333201266;GTF2I:-1.74644792137;BREu{core}:-1.74788534426;ZEB1:-1.75609424618;TP53:-1.7768962541;RFX1:-1.78668197341;ZNF148:-1.78987490168;TLX1..3_NFIC{dimer}:-1.79771632203;SP1:-1.81194192504;MAZ:-1.81292007886;POU1F1:-1.81480209425;T:-1.8242021726;MYBL2:-1.8642772328;ONECUT1,2:-1.86710117046;FOXA2:-1.8842027459;SOX{8,9,10}:-1.88639226273;ZNF384:-1.91273898361;SNAI1..3:-1.91499472415;UFEwm:-1.98441838156;TBX4,5:-1.99062227175;GFI1B:-2.03147721014;TFAP2{A,C}:-2.03876623886;CRX:-2.052388287;HIC1:-2.05243308785;ELK1,4_GABP{A,B1}:-2.07874640024;KLF4:-2.14460350378;ADNP_IRX_SIX_ZHX:-2.14592994191;HAND1,2:-2.21748932401;TOPORS:-2.24570760513;ZIC1..3:-2.30588304011;bHLH_family:-2.33877411188;EBF1:-2.38805943486;AIRE:-2.39217826611;FOXQ1:-2.40082984548;LMO2:-2.41217477326;TEF:-2.41474953284;NFY{A,B,C}:-2.41949473486;HOX{A4,D4}:-2.42485636677;EVI1:-2.48451690127;ZNF423:-2.50825688284;NR5A1,2:-2.5316145125;SOX17:-2.81051809799;PBX1:-2.8237568587;PAX5:-2.84440624067;FOX{I1,J2}:-2.84560689051;NRF1:-2.90392398663;GFI1:-2.92367719122;YY1:-2.95224115534;ARID5B:-2.95583080236;AR:-3.03204708775;LHX3,4:-3.47895277897;ZNF143:-3.56623490009;LEF1_TCF7_TCF7L1,2:-3.56988756597 | |top_motifs=STAT2,4,6:5.6873180702;STAT5{A,B}:5.0760598675;NFE2:4.65898972643;FOSL2:4.51699774424;IRF7:4.37666428933;STAT1,3:4.35731913977;NFE2L2:4.30464233454;CEBPA,B_DDIT3:4.25343635409;IRF1,2:4.04942952684;BACH2:4.04449793903;FOS_FOS{B,L1}_JUN{B,D}:3.93877530274;PAX2:3.81814875974;HLF:3.75394877891;SPIB:3.15935565633;NANOG{mouse}:2.91180948729;SREBF1,2:2.88191990142;SPI1:2.87026886345;ETS1,2:2.6609524874;NFKB1_REL_RELA:2.6520852099;NFIL3:2.61402352228;NR1H4:2.59670030543;FOXP3:2.45582888747;DMAP1_NCOR{1,2}_SMARC:2.43026700202;EP300:2.42204088476;ATF4:2.30299643723;ATF5_CREB3:2.30063116651;NFE2L1:2.18351912136;ATF6:2.16998033433;RUNX1..3:1.96582741093;FOXN1:1.93005147584;HSF1,2:1.87487964078;CREB1:1.86743276206;JUN:1.71762497471;ATF2:1.59887352137;TGIF1:1.54147464543;NFATC1..3:1.45861019126;ELF1,2,4:1.45519624723;ALX4:1.32733870701;HIF1A:1.28042868529;CDX1,2,4:1.27045570132;PDX1:1.23989793587;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:1.20438362811;MAFB:1.10730731647;PAX8:1.06146334655;XBP1:0.879268800458;GLI1..3:0.811849149249;PAX3,7:0.706019063101;ZBTB16:0.65421279013;PPARG:0.632979141294;RXRA_VDR{dimer}:0.597746605104;TLX2:0.491696046027;SRF:0.480293920921;BPTF:0.378394826692;HOX{A5,B5}:0.362230512703;NR6A1:0.359261286569;TFCP2:0.2706289965;FOXD3:0.254445309164;PRDM1:0.240655049559;HMGA1,2:0.213372334137;HMX1:0.173184400016;ESRRA:0.152242075381;AHR_ARNT_ARNT2:0.132044413194;TBP:0.131300247182;SMAD1..7,9:0.10401074364;HBP1_HMGB_SSRP1_UBTF:0.0903711470538;GATA4:0.0609816963918;NANOG:0.0308285279103;SPZ1:-0.0340430392294;IKZF1:-0.0537015508883;ESR1:-0.119762955786;EN1,2:-0.129168588362;HOXA9_MEIS1:-0.147854964283;MEF2{A,B,C,D}:-0.158855206145;PITX1..3:-0.189901984093;PAX4:-0.236961034429;RBPJ:-0.285108842133;EGR1..3:-0.2898250058;FOXO1,3,4:-0.293444446195;FOXM1:-0.301112159967;IKZF2:-0.303323878275;VSX1,2:-0.334305959497;RFX2..5_RFXANK_RFXAP:-0.349683894424;HES1:-0.363505246943;FOX{D1,D2}:-0.384115098271;MYB:-0.431102294032;OCT4_SOX2{dimer}:-0.469608004519;POU2F1..3:-0.62755594224;NKX6-1,2:-0.667491822794;FOXL1:-0.700410062435;MZF1:-0.712075369692;RORA:-0.746490856563;FOXP1:-0.825871659475;HOX{A6,A7,B6,B7}:-0.829429625931;FOX{F1,F2,J1}:-0.858882804135;TFAP4:-0.859939776446;POU5F1:-0.889720753217;DBP:-0.912120662464;RXR{A,B,G}:-0.947159205991;ALX1:-0.950573598829;PAX1,9:-0.950948549814;NHLH1,2:-0.955030893442;TAL1_TCF{3,4,12}:-1.00253623467;SOX2:-1.01374005283;HNF4A_NR2F1,2:-1.01398211579;REST:-1.0313278966;PAX6:-1.04660947468;HNF1A:-1.08437701441;MED-1{core}:-1.12999793335;NKX2-2,8:-1.13289677107;MYFfamily:-1.14624260247;ZNF238:-1.19868210379;PRRX1,2:-1.21835112174;POU6F1:-1.22304536787;MTE{core}:-1.23061295819;RXR{A,B,G}_{NR1H2,PPAR}dimers:-1.25476172027;NKX3-2:-1.30726290505;NR3C1:-1.32733655755;NKX3-1:-1.39151050107;SOX5:-1.40585256815;GCM1,2:-1.41576984373;GZF1:-1.45047621508;RREB1:-1.4516845404;GATA6:-1.50029763425;ZBTB6:-1.50462194843;TFAP2B:-1.51169339269;PATZ1:-1.52066178947;CUX2:-1.547762325;MTF1:-1.55945446376;NFIX:-1.59383003143;ZFP161:-1.60716535541;NKX2-1,4:-1.61257058626;NKX2-3_NKX2-5:-1.62305034824;TEAD1:-1.63264209622;XCPE1{core}:-1.64580942982;E2F1..5:-1.66828898113;MYOD1:-1.67059816496;GTF2A1,2:-1.67177462065;TFDP1:-1.68599113809;CDC5L:-1.70862361806;POU3F1..4:-1.73333201266;GTF2I:-1.74644792137;BREu{core}:-1.74788534426;ZEB1:-1.75609424618;TP53:-1.7768962541;RFX1:-1.78668197341;ZNF148:-1.78987490168;TLX1..3_NFIC{dimer}:-1.79771632203;SP1:-1.81194192504;MAZ:-1.81292007886;POU1F1:-1.81480209425;T:-1.8242021726;MYBL2:-1.8642772328;ONECUT1,2:-1.86710117046;FOXA2:-1.8842027459;SOX{8,9,10}:-1.88639226273;ZNF384:-1.91273898361;SNAI1..3:-1.91499472415;UFEwm:-1.98441838156;TBX4,5:-1.99062227175;GFI1B:-2.03147721014;TFAP2{A,C}:-2.03876623886;CRX:-2.052388287;HIC1:-2.05243308785;ELK1,4_GABP{A,B1}:-2.07874640024;KLF4:-2.14460350378;ADNP_IRX_SIX_ZHX:-2.14592994191;HAND1,2:-2.21748932401;TOPORS:-2.24570760513;ZIC1..3:-2.30588304011;bHLH_family:-2.33877411188;EBF1:-2.38805943486;AIRE:-2.39217826611;FOXQ1:-2.40082984548;LMO2:-2.41217477326;TEF:-2.41474953284;NFY{A,B,C}:-2.41949473486;HOX{A4,D4}:-2.42485636677;EVI1:-2.48451690127;ZNF423:-2.50825688284;NR5A1,2:-2.5316145125;SOX17:-2.81051809799;PBX1:-2.8237568587;PAX5:-2.84440624067;FOX{I1,J2}:-2.84560689051;NRF1:-2.90392398663;GFI1:-2.92367719122;YY1:-2.95224115534;ARID5B:-2.95583080236;AR:-3.03204708775;LHX3,4:-3.47895277897;ZNF143:-3.56623490009;LEF1_TCF7_TCF7L1,2:-3.56988756597 | ||
|xref= | |||
|zenbu_report=https://fantom.gsc.riken.jp/zenbu/reports/#miRNA_expression_atlas_human;search_select_hide=table111:FF:11870-125B7;search_select_hide=table117:FF:11870-125B7 | |||
}} | }} |
Latest revision as of 18:25, 4 June 2020
Name: | CD14+ monocytes - treated with BCG, donor2 |
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Species: | Human (Homo sapiens) |
Library ID: | CNhs13475 |
Sample type: | primary cells |
Genomic View: | UCSC |
RefEX: | Specific genes |
FANTOM CAT: | 1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11 |
CAGEd-oPOSSUM: | link |
ZENBU report : | link |
Additional information | ||||||||||||||||||||||||||||
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Sample information
RNA information
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CAGE Accession numbers | ||||||||||||||||||||||||||||||||||||||||||||||
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Download raw sequence, BAM & CTSS | ||||||||||||||
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Relative expression to median (log10)
Transcription factors with enriched expression in this sampleRanked list of transcription factor promoter expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.
Co-expression clusters with enriched expression in this sampleRanked list of co-expression cluster expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed. <br>Analyst:NA <br><br>link to dataset.<br>data
Repeat families with enriched expression in this sample<b>Summary:</b>Ranked list of repeat family expression in this sample relative tothe median expression in the FANTOM5 collection is shown. Value is log10transformed.<br><b>Analyst:</b>NA<br><br>link to dataset.<br>data
TFBS(DNA)motifs over-represented in proximal region of promoters active in this sample
JASPAR motifs<b>Summary:</b>Association of JASPAR motif to the promoter expression in thissample. Pearson's correlation between the number of TFBSs estimated byusing the position-weight matrix for each promoter and its expression isexpressed as Z-score by taking the ones based on random position-weightmatrix, and the tail probability of the normal distribution correspondingto the Z-score is taken as the resulting P-value. Lower P-value indicatesmore (non-random) association of the motif to promoter expression<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data
library id: CNhs13475
FANTOM5 phase1 novel unique motifs<b>Summary:</b>Association of the 169 novel and unique motifs discovered in FANTOM5 phase1 in this sample. Among the de-novo motifs discovered by DMF, HOMER,ChIPMunk, and ScanAll, only novel motifs are selected after comparison with known motif sets, and their clustering based on MACRO-APE resulted in169 novel and unique motifs. Their association to the promoter expression is evaluated in the same way to the JASPAR motif above<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data
library id: CNhs13475
Novel motif | Logo | P-value |
---|---|---|
1 | 1 | 0.0831 |
10 | 10 | 0.0227 |
100 | 100 | 0.989 |
101 | 101 | 0.816 |
102 | 102 | 0.803 |
103 | 103 | 0.274 |
104 | 104 | 0.533 |
105 | 105 | 0.152 |
106 | 106 | 7.61515e-4 |
107 | 107 | 0.21 |
108 | 108 | 0.87 |
109 | 109 | 0.248 |
11 | 11 | 0.164 |
110 | 110 | 0.138 |
111 | 111 | 0.0371 |
112 | 112 | 0.38 |
113 | 113 | 0.561 |
114 | 114 | 0.0171 |
115 | 115 | 0.231 |
116 | 116 | 0.873 |
117 | 117 | 0.0723 |
118 | 118 | 0.203 |
119 | 119 | 0.141 |
12 | 12 | 0.347 |
120 | 120 | 0.783 |
121 | 121 | 0.524 |
122 | 122 | 0.556 |
123 | 123 | 0.218 |
124 | 124 | 0.795 |
125 | 125 | 0.387 |
126 | 126 | 0.267 |
127 | 127 | 0.439 |
128 | 128 | 0.0377 |
129 | 129 | 0.41 |
13 | 13 | 0.108 |
130 | 130 | 0.17 |
131 | 131 | 0.771 |
132 | 132 | 0.0624 |
133 | 133 | 0.563 |
134 | 134 | 0.689 |
135 | 135 | 0.633 |
136 | 136 | 0.917 |
137 | 137 | 0.0313 |
138 | 138 | 0.213 |
139 | 139 | 0.0627 |
14 | 14 | 0.439 |
140 | 140 | 0.332 |
141 | 141 | 0.226 |
142 | 142 | 0.0571 |
143 | 143 | 0.0239 |
144 | 144 | 0.655 |
145 | 145 | 0.294 |
146 | 146 | 0.752 |
147 | 147 | 0.595 |
148 | 148 | 0.013 |
149 | 149 | 0.876 |
15 | 15 | 0.166 |
150 | 150 | 0.416 |
151 | 151 | 0.392 |
152 | 152 | 0.243 |
153 | 153 | 0.819 |
154 | 154 | 0.504 |
155 | 155 | 0.911 |
156 | 156 | 0.499 |
157 | 157 | 0.613 |
158 | 158 | 0.0386 |
159 | 159 | 0.504 |
16 | 16 | 0.3 |
160 | 160 | 0.361 |
161 | 161 | 0.456 |
162 | 162 | 0.21 |
163 | 163 | 0.0778 |
164 | 164 | 0.114 |
165 | 165 | 0.137 |
166 | 166 | 0.691 |
167 | 167 | 0.147 |
168 | 168 | 0.219 |
169 | 169 | 0.00733 |
17 | 17 | 0.192 |
18 | 18 | 0.125 |
19 | 19 | 0.453 |
2 | 2 | 0.657 |
20 | 20 | 0.26 |
21 | 21 | 0.567 |
22 | 22 | 0.31 |
23 | 23 | 0.04 |
24 | 24 | 0.322 |
25 | 25 | 0.409 |
26 | 26 | 0.066 |
27 | 27 | 0.762 |
28 | 28 | 0.487 |
29 | 29 | 0.254 |
3 | 3 | 0.11 |
30 | 30 | 0.539 |
31 | 31 | 0.789 |
32 | 32 | 0.803 |
33 | 33 | 0.284 |
34 | 34 | 0.646 |
35 | 35 | 0.183 |
36 | 36 | 0.0816 |
37 | 37 | 0.0714 |
38 | 38 | 0.394 |
39 | 39 | 0.813 |
4 | 4 | 0.921 |
40 | 40 | 0.223 |
41 | 41 | 0.016 |
42 | 42 | 0.369 |
43 | 43 | 0.0308 |
44 | 44 | 0.898 |
45 | 45 | 0.791 |
46 | 46 | 0.183 |
47 | 47 | 0.528 |
48 | 48 | 0.476 |
49 | 49 | 0.133 |
5 | 5 | 0.286 |
50 | 50 | 0.994 |
51 | 51 | 0.419 |
52 | 52 | 0.377 |
53 | 53 | 0.497 |
54 | 54 | 0.371 |
55 | 55 | 0.403 |
56 | 56 | 0.675 |
57 | 57 | 0.778 |
58 | 58 | 0.145 |
59 | 59 | 0.218 |
6 | 6 | 0.877 |
60 | 60 | 0.0463 |
61 | 61 | 0.672 |
62 | 62 | 0.0754 |
63 | 63 | 0.488 |
64 | 64 | 0.439 |
65 | 65 | 0.229 |
66 | 66 | 0.281 |
67 | 67 | 0.547 |
68 | 68 | 0.867 |
69 | 69 | 0.449 |
7 | 7 | 0.265 |
70 | 70 | 0.0381 |
71 | 71 | 0.0379 |
72 | 72 | 0.164 |
73 | 73 | 0.171 |
74 | 74 | 0.11 |
75 | 75 | 0.131 |
76 | 76 | 0.192 |
77 | 77 | 0.511 |
78 | 78 | 0.111 |
79 | 79 | 0.401 |
8 | 8 | 0.357 |
80 | 80 | 0.215 |
81 | 81 | 0.331 |
82 | 82 | 0.189 |
83 | 83 | 0.0255 |
84 | 84 | 0.226 |
85 | 85 | 0.0206 |
86 | 86 | 0.052 |
87 | 87 | 0.658 |
88 | 88 | 0.619 |
89 | 89 | 0.233 |
9 | 9 | 0.362 |
90 | 90 | 0.0926 |
91 | 91 | 0.296 |
92 | 92 | 0.273 |
93 | 93 | 0.387 |
94 | 94 | 0.0802 |
95 | 95 | 0.363 |
96 | 96 | 0.45 |
97 | 97 | 0.66 |
98 | 98 | 0.101 |
99 | 99 | 0.0761 |
de novo motifs identified by HOMER in promoters active in this sample<b>Summary:</b>The result of HOMER in this sample is shown.<br><b>Analyst:</b>NA <br>
library id: CNhs13475
FANTOM5 (FF) ontology
Direct parent terms
is_a relathionship
EFO:0002091 biological replicate
FF:0011103 human CD14-positive monocytes - treated with BCG sample
Ancestor terms (non development)<b>Summary:</b>Connected ontology terms with is_a, part_of or located_in relationship <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source data<br>data
CL: Cell type
0000000 (cell), 0000000 (cell)
0000003 (native cell)
0000988 (hematopoietic cell)
0000548 (animal cell)
0000763 (myeloid cell)
0002371 (somatic cell)
0000766 (myeloid leukocyte)
0000219 (motile cell)
0000325 (stuff accumulating cell)
0000473 (defensive cell)
0000234 (phagocyte)
0000738 (leukocyte)
0002087 (nongranular leukocyte)
0000255 (eukaryotic cell)
0000576 (monocyte)
0000860 (classical monocyte)
0002057 (CD14-positive, CD16-negative classical monocyte)
FF: FANTOM5
0000102 (sample by type)
0000210 (human sample)
0000002 (in vivo cell sample)
0000101 (sample by species)
0000001 (sample)
0000625 (experimental infection sample)
0000350 (experimentally modified sample)
0000628 (Bacillus Calmette-Guerin treatment sample)
0011103 (human CD14-positive monocytes - treated with BCG sample)
Ancestor terms (development)<b>Summary:</b>Connected ontology terms with develops_from, derives_from or preceded_by relationship <br><b>Analyst:</b> Hideya Kawaji <br><br>link to source data<br>data
CL:0000049 (common myeloid progenitor)
CL:0000134 (mesenchymal cell)
CL:0002057 (CD14-positive, CD16-negative classical monocyte)