FF:14311-155C9: Difference between revisions
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{{f5samples | {{f5samples | ||
|ancestors_in_anatomy_facet=UBERON:0000468 | |DRA_sample_Accession=CAGE@SAMD00005828 | ||
|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003 | |DRA_sample_Accession_RNASeq=sRNA-Seq@SAMD00005828 | ||
|accession_numbers=CAGE;DRX008034;DRR008906;DRZ000331;DRZ001716;DRZ011681;DRZ013066 | |||
|accession_numbers_RNASeq=sRNA-Seq;DRX036988;DRR041354;DRZ006996 | |||
|ancestors_in_anatomy_facet=UBERON:0000468,UBERON:0000947,UBERON:0001637,UBERON:0000483,UBERON:0002384,UBERON:0000479,UBERON:0000055,UBERON:0000064,UBERON:0000062,UBERON:0004111,UBERON:0004120,UBERON:0000061,UBERON:0000465,UBERON:0003914,UBERON:0000025,UBERON:0004923,UBERON:0000477,UBERON:0000467,UBERON:0000060,UBERON:0001062,UBERON:0000480,UBERON:0000119,UBERON:0004573,UBERON:0003509,UBERON:0007500,UBERON:0001981,UBERON:0002049,UBERON:0004797,UBERON:0010317,UBERON:0007798,UBERON:0000415,UBERON:0007240,UBERON:0005742,UBERON:0005734,UBERON:0004664,UBERON:0004535,UBERON:0004571,UBERON:0010191,UBERON:0004572,UBERON:0004537,UBERON:0001009,UBERON:0004663 | |||
|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000548,CL:0002320,CL:0002371,CL:0000255,CL:0000057,CL:1000306,CL:0002547 | |||
|ancestors_in_disease_facet= | |ancestors_in_disease_facet= | ||
|ancestors_in_ff_facet=FF:0000102,FF:0000210,FF:0000002,FF:0000101,FF:0000057,FF:0000001,FF:0000408,FF:0000350,FF:0000058,FF:0000406,FF:0000666 | |||
|comment= | |comment= | ||
|created_by= | |created_by= | ||
|creation_date= | |creation_date= | ||
|data_phase=2 | |||
|datafreeze_phase=2 | |||
|def= | |def= | ||
|expression_enrichment_score=chr2:19558373..19558392,-!p1@OSR1!1.67!121.91!OSR1;;chr1:170632285..170632309,+!p1@PRRX1!1.56!39.58!PRRX1;;chr18:19749541..19749557,+!p1@GATA6!1.53!99.53!GATA6;;chr18:19749386..19749404,+!p2@GATA6!1.53!46.47!GATA6;;chr8:55370487..55370503,+!p1@SOX17!1.52!31.84!SOX17;;chr7:44143925..44143970,+!p1@AEBP1!1.49!637.92!AEBP1;;chr11:46299539..46299620,+!p2@CREB3L1!1.43!43.60!CREB3L1;;chr7:44143978..44143989,+!p2@AEBP1!1.39!42.45!AEBP1;;chr9:16870659..16870675,-!p2@BNC2!1.33!24.67!BNC2;;chr4:174451370..174451387,-!p1@HAND2!1.32!19.79!HAND2;;chr6:134210243..134210257,+!p1@TCF21!1.29!18.64!TCF21;;chr1:170633348..170633399,+!p2@PRRX1!1.23!21.51!PRRX1;;chr11:46299199..46299233,+!p1@CREB3L1!1.20!75.72!CREB3L1;;chr7:44143997..44144008,+!p3@AEBP1!1.20!18.93!AEBP1;;chr8:106330656..106330684,+!p1@ZFPM2!1.18!36.72!ZFPM2;;chr1:170633262..170633285,+!p3@PRRX1!1.18!16.06!PRRX1;;chr3:169381183..169381205,-!p4@MECOM!1.17!13.77!MECOM;;chrX:2418949..2419024,-!p1@DHRSX,p1@ZBED1!1.15!13.19!ZBED1;;chr12:52445218..52445237,+!p1@NR4A1!1.14!161.49!NR4A1;;chr21:36260773..36260804,-!p7@RUNX1!1.13!16.92!RUNX1;;chr7:35293685..35293718,-!p1@TBX20!1.12!12.33!TBX20;;chr8:93074803..93074845,-!p1@RUNX1T1!1.12!12.05!RUNX1T1;;chr15:67430351..67430366,+!p10@SMAD3!1.11!11.76!SMAD3;;chr10:131762504..131762555,-!p1@EBF3!1.11!11.76!EBF3;;chr19:13134772..13134822,+!p2@NFIX!1.09!16.64!NFIX;;chr12:66218598..66218645,+!p2@HMGA2!1.08!51.34!HMGA2;;chr1:158979872..158979898,+!p3@IFI16!1.08!34.13!IFI16;;chr6:144329384..144329405,-!p1@PLAGL1!1.05!120.47!PLAGL1;;chr3:141105705..141105770,+!p4@ZBTB38!1.05!12.62!ZBTB38;;chr8:77593750..77593757,+!p3@ZFHX4!1.05!10.33!ZFHX4;;chr19:50432453..50432468,+!p1@ATF5!1.03!549.29!ATF5;;chr2:66662281..66662308,+!p1@MEIS1!1.03!34.13!MEIS1;;chr10:114710244..114710257,+!p3@TCF7L2!1.03!26.68!TCF7L2;;chr19:46801639..46801699,+!p1@HIF3A!1.03!9.75!HIF3A;;chr19:13135582..13135600,+!p3@NFIX!1.03!9.75!NFIX;;chr1:170632959..170632987,+!p4@PRRX1!1.02!10.33!PRRX1;;chr3:169381420..169381535,-!p1@MECOM!1.00!10.61!MECOM;;chr3:71630980..71631110,-!p3@FOXP1!0.99!31.55!FOXP1;;chr8:72756667..72756736,-!p2@MSC!0.99!14.05!MSC;;chr8:106330696..106330719,+!p2@ZFPM2!0.99!11.19!ZFPM2;;chr6:10415276..10415341,-!p2@TFAP2A!0.98!10.61!TFAP2A;;chr4:174450089..174450153,-!p2@HAND2!0.98!8.61!HAND2;;chr3:141087393..141087426,+!p3@ZBTB38!0.97!33.85!ZBTB38;;chr17:1959369..1959388,+!p2@HIC1!0.97!22.66!HIC1;;chr1:170632723..170632739,+!p8@PRRX1!0.97!8.32!PRRX1;;chr8:77593474..77593612,+!p1@ZFHX4!0.96!35.57!ZFHX4;;chr1:170633058..170633084,+!p5@PRRX1!0.96!8.03!PRRX1;;chr5:158526917..158526932,-!p1@EBF1!0.95!20.37!EBF1;;chr18:19749517..19749531,+!p3@GATA6!0.94!14.05!GATA6;;chr6:10412600..10412637,-!p1@TFAP2A!0.94!13.19!TFAP2A;;chr12:72056800..72056834,+!p1@THAP2!0.94!10.61!THAP2;;chr14:24837368..24837401,+!p1@NFATC4!0.93!18.36!NFATC4;;chr2:102091144..102091183,-!p2@RFX8!0.93!7.46!RFX8;;chr3:141087454..141087465,+!p19@ZBTB38!0.93!7.46!ZBTB38;;chr19:45971246..45971265,+!p1@FOSB!0.92!143.71!FOSB;;chr9:16870710..16870763,-!p1@BNC2!0.92!12.91!BNC2;;chr8:72756637..72756664,-!p3@MSC!0.92!8.32!MSC;;chr12:66218255..66218304,+!p3@HMGA2!0.91!20.08!HMGA2;;chr15:80843484..80843499,+!p5@ARNT2!0.91!7.17!ARNT2;;chr16:4366053..4366076,+!p@chr16:4366053..4366076,+!0.89!70.27!GLIS2;;chr3:114343768..114343822,-!p1@ZBTB20!0.89!30.98!ZBTB20;;chr17:46126136..46126152,+!p1@NFE2L1!0.88!355.39!NFE2L1;;chr9:102584262..102584276,+!p1@NR4A3!0.88!15.20!NR4A3;;chr7:150945754..150945789,-!p2@SMARCD3!0.87!20.94!SMARCD3;;chr7:19157248..19157268,-!p1@TWIST1!0.87!18.36!TWIST1;;chr7:113726357..113726443,+!p1@FOXP2!0.87!11.47!FOXP2;;chr9:14314566..14314618,-!p1@NFIB!0.86!79.17!NFIB;;chr17:26697276..26697303,-!p2@SEBOX,p2@VTN!0.86!6.31!SEBOX;;chr18:19749504..19749515,+!p5@GATA6!0.85!6.02!GATA6;;chr7:19157043..19157088,-!p2@TWIST1!0.84!15.78!TWIST1;;chr10:63809106..63809127,+!p1@ARID5B!0.83!83.47!ARID5B;;chr6:19837592..19837621,+!p1@ID4!0.83!37.86!ID4;;chr9:14314131..14314147,-!p2@NFIB!0.83!34.42!NFIB;;chr17:46132044..46132080,+!p4@NFE2L1!0.83!5.74!NFE2L1;;chr12:57504975..57505019,-!p2@STAT6!0.81!23.81!STAT6;;chr3:141121847..141121868,+!p5@ZBTB38!0.81!8.61!ZBTB38;;chr17:46655704..46655718,-!p2@HOXB4!0.81!8.32!HOXB4;;chr18:19749353..19749367,+!p4@GATA6!0.81!5.45!GATA6;;chr3:187463179..187463201,-!p2@BCL6!0.80!23.81!BCL6;;chr8:116681123..116681143,-!p4@TRPS1!0.80!10.90!TRPS1;;chr3:168864315..168864339,-!p2@MECOM!0.80!9.18!MECOM;;chr10:63809013..63809041,+!p3@ARID5B!0.79!31.27!ARID5B;;chr15:37392724..37392757,-!p1@MEIS2!0.79!25.53!MEIS2;;chr2:66662249..66662267,+!p2@MEIS1!0.79!21.51!MEIS1;;chr6:126102292..126102329,+!p3@NCOA7!0.79!18.07!NCOA7;;chr15:37392616..37392638,-!p2@MEIS2!0.79!17.21!MEIS2;;chr6:144289132..144289134,-!p3@PLAGL1!0.79!12.62!PLAGL1;;chr16:67881588..67881612,-!p2@CENPT!0.79!7.17!CENPT;;chr3:170076314..170076334,+!p2@SKIL!0.79!6.88!SKIL;;chr2:66662895..66662907,+!p3@MEIS1!0.79!6.60!MEIS1;;chr5:158527139..158527161,-!p5@EBF1!0.79!5.16!EBF1;;chr11:125034605..125034636,+!p2@PKNOX2!0.79!5.16!PKNOX2;;chr9:102584159..102584174,+!p2@NR4A3!0.78!9.47!NR4A3;;chr2:239756739..239756755,+!p2@TWIST2!0.78!8.89!TWIST2;;chr1:164528911..164528940,+!p7@PBX1!0.78!7.74!PBX1;;chr14:62162258..62162269,+!p2@HIF1A!0.77!52.20!HIF1A;;chr8:116680215..116680245,-!p6@TRPS1!0.77!8.03!TRPS1;;chr11:46299443..46299459,+!p4@CREB3L1!0.77!4.88!CREB3L1;;chr1:158979792..158979814,+!p2@IFI16!0.76!50.20!IFI16;;chr1:158979851..158979865,+!p5@IFI16!0.76!11.19!IFI16;;chr10:63809077..63809089,+!p5@ARID5B!0.76!10.90!ARID5B;;chr8:72756267..72756296,-!p4@MSC!0.76!7.17!MSC;;chr5:158526459..158526481,-!p2@EBF1!0.76!6.60!EBF1;;chr6:10412392..10412409,-!p4@TFAP2A!0.76!5.45!TFAP2A;;chr9:110252035..110252057,-!p1@KLF4!0.75!82.32!KLF4;;chr13:45151259..45151326,-!p2@TSC22D1!0.75!30.40!TSC22D1;;chr15:37391588..37391604,-!p11@MEIS2!0.75!6.02!MEIS2;;chr5:158527104..158527135,-!p4@EBF1!0.75!4.59!EBF1;;chr1:170632683..170632696,+!p12@PRRX1!0.75!4.59!PRRX1;;chr9:132427883..132427951,+!p2@PRRX2!0.75!4.59!PRRX2;;chr9:16727978..16728010,-!p6@BNC2!0.75!4.59!BNC2;;chr10:31610110..31610159,+!p2@ZEB1!0.75!4.59!ZEB1;;chr15:42749722..42749739,-!p2@ZFP106!0.74!8.61!ZFP106;;chr12:66218212..66218244,+!p5@HMGA2!0.74!6.88!HMGA2;;chrX:66763856..66763896,+!p1@AR!0.73!6.60!AR;;chr7:148959269..148959326,+!p1@ZNF783!0.72!38.72!ZNF783;;chr9:14313893..14313908,-!p7@NFIB!0.72!6.31!NFIB;;chr8:93074848..93074871,-!p3@RUNX1T1!0.72!4.30!RUNX1T1;;chr1:170632439..170632465,+!p11@PRRX1!0.72!4.30!PRRX1;;chr16:31076332..31076388,-!p3@ZNF668!0.72!4.30!ZNF668;;chr2:66662396..66662407,+!p4@MEIS1!0.72!4.30!MEIS1;;chr3:25470156..25470227,+!p2@RARB!0.72!4.30!RARB;;chr19:50435736..50435781,+!p3@ATF5!0.71!6.02!ATF5;;chr15:37390482..37390572,-!p7@MEIS2!0.70!5.74!MEIS2;;chrX:66763815..66763854,+!p2@AR!0.70!5.45!AR;;chr18:53068911..53068935,-!p4@TCF4!0.70!4.59!TCF4;;chr7:44143738..44143760,+!p4@AEBP1!0.70!4.59!AEBP1;;chr8:77593448..77593471,+!p2@ZFHX4!0.70!4.02!ZFHX4;;chr2:102091566..102091581,-!p1@RFX8!0.70!4.02!RFX8;;chr11:125034586..125034604,+!p3@PKNOX2!0.70!4.02!PKNOX2;;chr11:125034640..125034655,+!p1@PKNOX2!0.70!4.02!PKNOX2;;chr5:137801160..137801176,+!p1@EGR1!0.69!445.17!EGR1;;chr1:61548374..61548415,+!p4@NFIA!0.69!7.74!NFIA;;chr12:80085061..80085119,-!p6@PAWR!0.69!6.60!PAWR;;chr12:66218836..66218888,+!p1@HMGA2!0.68!40.16!HMGA2;;chr2:157198916..157198978,-!p2@NR4A2!0.68!14.92!NR4A2;;chr5:321810..321877,+!p1@AHRR!0.68!13.48!AHRR;;chr8:22550982..22550999,-!p1@EGR3!0.68!11.76!EGR3;;chr4:206390..206444,+!p1@ZNF876P!0.68!7.17!ZNF876P;;chr12:80085255..80085284,-!p9@PAWR!0.68!5.74!PAWR;;chr9:132427972..132428056,+!p1@PRRX2!0.68!5.16!PRRX2;;chr12:124873357..124873401,-!p1@NCOR2!0.67!48.76!NCOR2;;chr9:4300050..4300118,-!p1@GLIS3!0.67!27.54!GLIS3;;chr2:121493425..121493474,+!p1@GLI2!0.67!8.89!GLI2;;chr15:57511609..57511651,+!p2@TCF12!0.67!6.60!TCF12;;chr9:110251836..110251887,-!p4@KLF4!0.67!5.16!KLF4;;chr1:170632250..170632277,+!p7@PRRX1!0.67!3.73!PRRX1;;chr1:170632477..170632506,+!p6@PRRX1!0.67!3.73!PRRX1;;chr14:75745523..75745537,+!p1@FOS!0.66!496.80!FOS;;chr2:239756671..239756732,+!p1@TWIST2!0.66!12.91!TWIST2;;chr15:96874927..96874938,+!p8@NR2F2!0.66!8.32!NR2F2;;chr4:95128841..95128865,+!p4@SMARCAD1!0.66!8.03!SMARCAD1;;chr20:25677399..25677433,-!p3@ZNF337!0.66!7.46!ZNF337;;chr6:32095523..32095564,-!p2@ATF6B!0.66!5.16!ATF6B;;chr10:31608127..31608156,+!p1@ZEB1!0.65!75.44!ZEB1;;chr2:208031542..208031595,-!p2@KLF7!0.65!28.68!KLF7;;chr20:42543441..42543497,+!p1@TOX2!0.65!17.78!TOX2;;chr17:46125685..46125699,+!p3@NFE2L1!0.65!13.77!NFE2L1;;chr9:102584241..102584261,+!p4@NR4A3!0.65!5.74!NR4A3;;chr15:37392703..37392717,-!p8@MEIS2!0.65!5.16!MEIS2;;chr4:81118647..81118666,+!p1@PRDM8!0.65!4.88!PRDM8;;chr10:64134120..64134183,+!p1@ZNF365!0.65!4.30!ZNF365;;chr12:66218904..66218913,+!p11@HMGA2!0.65!3.44!HMGA2;;chr2:66662510..66662521,+!p6@MEIS1!0.65!3.44!MEIS1;;chr7:27142290..27142310,-!p1@HOXA2!0.65!3.44!HOXA2;;chr8:25902876..25902936,-!p1@EBF2!0.65!3.44!EBF2;;chr17:26697304..26697335,-!p1@SEBOX,p1@VTN!0.65!3.44!SEBOX;;chr19:13135386..13135435,+!p4@NFIX!0.65!3.44!NFIX;;chr14:62162224..62162254,+!p1@HIF1A!0.64!577.98!HIF1A;;chr12:56753869..56753930,-!p1@STAT2!0.64!176.40!STAT2;;chr1:161736102..161736123,+!p1@ATF6!0.64!106.13!ATF6;;chr12:77459306..77459365,-!p1@E2F7!0.64!49.05!E2F7;;chr15:37393449..37393528,-!p4@MEIS2!0.64!10.33!MEIS2;;chr6:1610293..1610310,+!p1@FOXC1!0.64!6.02!FOXC1;;chr6:1389789..1389821,+!p1@FOXF2!0.64!4.88!FOXF2;;chr3:168865194..168865245,-!p3@MECOM!0.64!4.59!MECOM;;chr5:88178983..88179012,-!p1@MEF2C!0.63!29.83!MEF2C;;chr2:208031943..208031978,-!p5@KLF7!0.63!4.59!KLF7;;chr4:81104958..81104981,+!p5@PRDM8!0.63!4.02!PRDM8;;chr11:46299186..46299195,+!p3@CREB3L1!0.63!3.73!CREB3L1;;chrX:128657457..128657475,-!p1@SMARCA1!0.62!43.60!SMARCA1;;chr5:176738887..176738934,-!p1@MXD3!0.62!25.24!MXD3;;chr1:161736038..161736056,+!p4@ATF6!0.62!8.32!ATF6;;chr2:121493492..121493537,+!p2@GLI2!0.62!5.74!GLI2;;chr1:151043070..151043110,+!p3@GABPB2!0.62!5.45!GABPB2;;chr5:43067636..4306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| |expression_enrichment_score=chr2:19558373..19558392,-!p1@OSR1!1.67!121.91!OSR1;;chr1:170632285..170632309,+!p1@PRRX1!1.56!39.58!PRRX1;;chr18:19749541..19749557,+!p1@GATA6!1.53!99.53!GATA6;;chr18:19749386..19749404,+!p2@GATA6!1.53!46.47!GATA6;;chr8:55370487..55370503,+!p1@SOX17!1.52!31.84!SOX17;;chr7:44143925..44143970,+!p1@AEBP1!1.49!637.92!AEBP1;;chr11:46299539..46299620,+!p2@CREB3L1!1.43!43.60!CREB3L1;;chr7:44143978..44143989,+!p2@AEBP1!1.39!42.45!AEBP1;;chr9:16870659..16870675,-!p2@BNC2!1.33!24.67!BNC2;;chr4:174451370..174451387,-!p1@HAND2!1.32!19.79!HAND2;;chr6:134210243..134210257,+!p1@TCF21!1.29!18.64!TCF21;;chr1:170633348..170633399,+!p2@PRRX1!1.23!21.51!PRRX1;;chr11:46299199..46299233,+!p1@CREB3L1!1.20!75.72!CREB3L1;;chr7:44143997..44144008,+!p3@AEBP1!1.20!18.93!AEBP1;;chr8:106330656..106330684,+!p1@ZFPM2!1.18!36.72!ZFPM2;;chr1:170633262..170633285,+!p3@PRRX1!1.18!16.06!PRRX1;;chr3:169381183..169381205,-!p4@MECOM!1.17!13.77!MECOM;;chrX:2418949..2419024,-!p1@DHRSX,p1@ZBED1!1.15!13.19!ZBED1;;chr12:52445218..52445237,+!p1@NR4A1!1.14!161.49!NR4A1;;chr21:36260773..36260804,-!p7@RUNX1!1.13!16.92!RUNX1;;chr7:35293685..35293718,-!p1@TBX20!1.12!12.33!TBX20;;chr8:93074803..93074845,-!p1@RUNX1T1!1.12!12.05!RUNX1T1;;chr15:67430351..67430366,+!p10@SMAD3!1.11!11.76!SMAD3;;chr10:131762504..131762555,-!p1@EBF3!1.11!11.76!EBF3;;chr19:13134772..13134822,+!p2@NFIX!1.09!16.64!NFIX;;chr12:66218598..66218645,+!p2@HMGA2!1.08!51.34!HMGA2;;chr1:158979872..158979898,+!p3@IFI16!1.08!34.13!IFI16;;chr6:144329384..144329405,-!p1@PLAGL1!1.05!120.47!PLAGL1;;chr3:141105705..141105770,+!p4@ZBTB38!1.05!12.62!ZBTB38;;chr8:77593750..77593757,+!p3@ZFHX4!1.05!10.33!ZFHX4;;chr19:50432453..50432468,+!p1@ATF5!1.03!549.29!ATF5;;chr2:66662281..66662308,+!p1@MEIS1!1.03!34.13!MEIS1;;chr10:114710244..114710257,+!p3@TCF7L2!1.03!26.68!TCF7L2;;chr19:46801639..46801699,+!p1@HIF3A!1.03!9.75!HIF3A;;chr19:13135582..13135600,+!p3@NFIX!1.03!9.75!NFIX;;chr1:170632959..170632987,+!p4@PRRX1!1.02!10.33!PRRX1;;chr3:169381420..169381535,-!p1@MECOM!1.00!10.61!MECOM;;chr3:71630980..71631110,-!p3@FOXP1!0.99!31.55!FOXP1;;chr8:72756667..72756736,-!p2@MSC!0.99!14.05!MSC;;chr8:106330696..106330719,+!p2@ZFPM2!0.99!11.19!ZFPM2;;chr6:10415276..10415341,-!p2@TFAP2A!0.98!10.61!TFAP2A;;chr4:174450089..174450153,-!p2@HAND2!0.98!8.61!HAND2;;chr3:141087393..141087426,+!p3@ZBTB38!0.97!33.85!ZBTB38;;chr17:1959369..1959388,+!p2@HIC1!0.97!22.66!HIC1;;chr1:170632723..170632739,+!p8@PRRX1!0.97!8.32!PRRX1;;chr8:77593474..77593612,+!p1@ZFHX4!0.96!35.57!ZFHX4;;chr1:170633058..170633084,+!p5@PRRX1!0.96!8.03!PRRX1;;chr5:158526917..158526932,-!p1@EBF1!0.95!20.37!EBF1;;chr18:19749517..19749531,+!p3@GATA6!0.94!14.05!GATA6;;chr6:10412600..10412637,-!p1@TFAP2A!0.94!13.19!TFAP2A;;chr12:72056800..72056834,+!p1@THAP2!0.94!10.61!THAP2;;chr14:24837368..24837401,+!p1@NFATC4!0.93!18.36!NFATC4;;chr2:102091144..102091183,-!p2@RFX8!0.93!7.46!RFX8;;chr3:141087454..141087465,+!p19@ZBTB38!0.93!7.46!ZBTB38;;chr19:45971246..45971265,+!p1@FOSB!0.92!143.71!FOSB;;chr9:16870710..16870763,-!p1@BNC2!0.92!12.91!BNC2;;chr8:72756637..72756664,-!p3@MSC!0.92!8.32!MSC;;chr12:66218255..66218304,+!p3@HMGA2!0.91!20.08!HMGA2;;chr15:80843484..80843499,+!p5@ARNT2!0.91!7.17!ARNT2;;chr16:4366053..4366076,+!p@chr16:4366053..4366076,+!0.89!70.27!GLIS2;;chr3:114343768..114343822,-!p1@ZBTB20!0.89!30.98!ZBTB20;;chr17:46126136..46126152,+!p1@NFE2L1!0.88!355.39!NFE2L1;;chr9:102584262..102584276,+!p1@NR4A3!0.88!15.20!NR4A3;;chr7:150945754..150945789,-!p2@SMARCD3!0.87!20.94!SMARCD3;;chr7:19157248..19157268,-!p1@TWIST1!0.87!18.36!TWIST1;;chr7:113726357..113726443,+!p1@FOXP2!0.87!11.47!FOXP2;;chr9:14314566..14314618,-!p1@NFIB!0.86!79.17!NFIB;;chr17:26697276..26697303,-!p2@SEBOX,p2@VTN!0.86!6.31!SEBOX;;chr18:19749504..19749515,+!p5@GATA6!0.85!6.02!GATA6;;chr7:19157043..19157088,-!p2@TWIST1!0.84!15.78!TWIST1;;chr10:63809106..63809127,+!p1@ARID5B!0.83!83.47!ARID5B;;chr6:19837592..19837621,+!p1@ID4!0.83!37.86!ID4;;chr9:14314131..14314147,-!p2@NFIB!0.83!34.42!NFIB;;chr17:46132044..46132080,+!p4@NFE2L1!0.83!5.74!NFE2L1;;chr12:57504975..57505019,-!p2@STAT6!0.81!23.81!STAT6;;chr3:141121847..141121868,+!p5@ZBTB38!0.81!8.61!ZBTB38;;chr17:46655704..46655718,-!p2@HOXB4!0.81!8.32!HOXB4;;chr18:19749353..19749367,+!p4@GATA6!0.81!5.45!GATA6;;chr3:187463179..187463201,-!p2@BCL6!0.80!23.81!BCL6;;chr8:116681123..116681143,-!p4@TRPS1!0.80!10.90!TRPS1;;chr3:168864315..168864339,-!p2@MECOM!0.80!9.18!MECOM;;chr10:63809013..63809041,+!p3@ARID5B!0.79!31.27!ARID5B;;chr15:37392724..37392757,-!p1@MEIS2!0.79!25.53!MEIS2;;chr2:66662249..66662267,+!p2@MEIS1!0.79!21.51!MEIS1;;chr6:126102292..126102329,+!p3@NCOA7!0.79!18.07!NCOA7;;chr15:37392616..37392638,-!p2@MEIS2!0.79!17.21!MEIS2;;chr6:144289132..144289134,-!p3@PLAGL1!0.79!12.62!PLAGL1;;chr16:67881588..67881612,-!p2@CENPT!0.79!7.17!CENPT;;chr3:170076314..170076334,+!p2@SKIL!0.79!6.88!SKIL;;chr2:66662895..66662907,+!p3@MEIS1!0.79!6.60!MEIS1;;chr5:158527139..158527161,-!p5@EBF1!0.79!5.16!EBF1;;chr11:125034605..125034636,+!p2@PKNOX2!0.79!5.16!PKNOX2;;chr9:102584159..102584174,+!p2@NR4A3!0.78!9.47!NR4A3;;chr2:239756739..239756755,+!p2@TWIST2!0.78!8.89!TWIST2;;chr1:164528911..164528940,+!p7@PBX1!0.78!7.74!PBX1;;chr14:62162258..62162269,+!p2@HIF1A!0.77!52.20!HIF1A;;chr8:116680215..116680245,-!p6@TRPS1!0.77!8.03!TRPS1;;chr11:46299443..46299459,+!p4@CREB3L1!0.77!4.88!CREB3L1;;chr1:158979792..158979814,+!p2@IFI16!0.76!50.20!IFI16;;chr1:158979851..158979865,+!p5@IFI16!0.76!11.19!IFI16;;chr10:63809077..63809089,+!p5@ARID5B!0.76!10.90!ARID5B;;chr8:72756267..72756296,-!p4@MSC!0.76!7.17!MSC;;chr5:158526459..158526481,-!p2@EBF1!0.76!6.60!EBF1;;chr6:10412392..10412409,-!p4@TFAP2A!0.76!5.45!TFAP2A;;chr9:110252035..110252057,-!p1@KLF4!0.75!82.32!KLF4;;chr13:45151259..45151326,-!p2@TSC22D1!0.75!30.40!TSC22D1;;chr15:37391588..37391604,-!p11@MEIS2!0.75!6.02!MEIS2;;chr5:158527104..158527135,-!p4@EBF1!0.75!4.59!EBF1;;chr1:170632683..170632696,+!p12@PRRX1!0.75!4.59!PRRX1;;chr9:132427883..132427951,+!p2@PRRX2!0.75!4.59!PRRX2;;chr9:16727978..16728010,-!p6@BNC2!0.75!4.59!BNC2;;chr10:31610110..31610159,+!p2@ZEB1!0.75!4.59!ZEB1;;chr15:42749722..42749739,-!p2@ZFP106!0.74!8.61!ZFP106;;chr12:66218212..66218244,+!p5@HMGA2!0.74!6.88!HMGA2;;chrX:66763856..66763896,+!p1@AR!0.73!6.60!AR;;chr7:148959269..148959326,+!p1@ZNF783!0.72!38.72!ZNF783;;chr9:14313893..14313908,-!p7@NFIB!0.72!6.31!NFIB;;chr8:93074848..93074871,-!p3@RUNX1T1!0.72!4.30!RUNX1T1;;chr1:170632439..170632465,+!p11@PRRX1!0.72!4.30!PRRX1;;chr16:31076332..31076388,-!p3@ZNF668!0.72!4.30!ZNF668;;chr2:66662396..66662407,+!p4@MEIS1!0.72!4.30!MEIS1;;chr3:25470156..25470227,+!p2@RARB!0.72!4.30!RARB;;chr19:50435736..50435781,+!p3@ATF5!0.71!6.02!ATF5;;chr15:37390482..37390572,-!p7@MEIS2!0.70!5.74!MEIS2;;chrX:66763815..66763854,+!p2@AR!0.70!5.45!AR;;chr18:53068911..53068935,-!p4@TCF4!0.70!4.59!TCF4;;chr7:44143738..44143760,+!p4@AEBP1!0.70!4.59!AEBP1;;chr8:77593448..77593471,+!p2@ZFHX4!0.70!4.02!ZFHX4;;chr2:102091566..102091581,-!p1@RFX8!0.70!4.02!RFX8;;chr11:125034586..125034604,+!p3@PKNOX2!0.70!4.02!PKNOX2;;chr11:125034640..125034655,+!p1@PKNOX2!0.70!4.02!PKNOX2;;chr5:137801160..137801176,+!p1@EGR1!0.69!445.17!EGR1;;chr1:61548374..61548415,+!p4@NFIA!0.69!7.74!NFIA;;chr12:80085061..80085119,-!p6@PAWR!0.69!6.60!PAWR;;chr12:66218836..66218888,+!p1@HMGA2!0.68!40.16!HMGA2;;chr2:157198916..157198978,-!p2@NR4A2!0.68!14.92!NR4A2;;chr5:321810..321877,+!p1@AHRR!0.68!13.48!AHRR;;chr8:22550982..22550999,-!p1@EGR3!0.68!11.76!EGR3;;chr4:206390..206444,+!p1@ZNF876P!0.68!7.17!ZNF876P;;chr12:80085255..80085284,-!p9@PAWR!0.68!5.74!PAWR;;chr9:132427972..132428056,+!p1@PRRX2!0.68!5.16!PRRX2;;chr12:124873357..124873401,-!p1@NCOR2!0.67!48.76!NCOR2;;chr9:4300050..4300118,-!p1@GLIS3!0.67!27.54!GLIS3;;chr2:121493425..121493474,+!p1@GLI2!0.67!8.89!GLI2;;chr15:57511609..57511651,+!p2@TCF12!0.67!6.60!TCF12;;chr9:110251836..110251887,-!p4@KLF4!0.67!5.16!KLF4;;chr1:170632250..170632277,+!p7@PRRX1!0.67!3.73!PRRX1;;chr1:170632477..170632506,+!p6@PRRX1!0.67!3.73!PRRX1;;chr14:75745523..75745537,+!p1@FOS!0.66!496.80!FOS;;chr2:239756671..239756732,+!p1@TWIST2!0.66!12.91!TWIST2;;chr15:96874927..96874938,+!p8@NR2F2!0.66!8.32!NR2F2;;chr4:95128841..95128865,+!p4@SMARCAD1!0.66!8.03!SMARCAD1;;chr20:25677399..25677433,-!p3@ZNF337!0.66!7.46!ZNF337;;chr6:32095523..32095564,-!p2@ATF6B!0.66!5.16!ATF6B;;chr10:31608127..31608156,+!p1@ZEB1!0.65!75.44!ZEB1;;chr2:208031542..208031595,-!p2@KLF7!0.65!28.68!KLF7;;chr20:42543441..42543497,+!p1@TOX2!0.65!17.78!TOX2;;chr17:46125685..46125699,+!p3@NFE2L1!0.65!13.77!NFE2L1;;chr9:102584241..102584261,+!p4@NR4A3!0.65!5.74!NR4A3;;chr15:37392703..37392717,-!p8@MEIS2!0.65!5.16!MEIS2;;chr4:81118647..81118666,+!p1@PRDM8!0.65!4.88!PRDM8;;chr10:64134120..64134183,+!p1@ZNF365!0.65!4.30!ZNF365;;chr12:66218904..66218913,+!p11@HMGA2!0.65!3.44!HMGA2;;chr2:66662510..66662521,+!p6@MEIS1!0.65!3.44!MEIS1;;chr7:27142290..27142310,-!p1@HOXA2!0.65!3.44!HOXA2;;chr8:25902876..25902936,-!p1@EBF2!0.65!3.44!EBF2;;chr17:26697304..26697335,-!p1@SEBOX,p1@VTN!0.65!3.44!SEBOX;;chr19:13135386..13135435,+!p4@NFIX!0.65!3.44!NFIX;;chr14:62162224..62162254,+!p1@HIF1A!0.64!577.98!HIF1A;;chr12:56753869..56753930,-!p1@STAT2!0.64!176.40!STAT2;;chr1:161736102..161736123,+!p1@ATF6!0.64!106.13!ATF6;;chr12:77459306..77459365,-!p1@E2F7!0.64!49.05!E2F7;;chr15:37393449..37393528,-!p4@MEIS2!0.64!10.33!MEIS2;;chr6:1610293..1610310,+!p1@FOXC1!0.64!6.02!FOXC1;;chr6:1389789..1389821,+!p1@FOXF2!0.64!4.88!FOXF2;;chr3:168865194..168865245,-!p3@MECOM!0.64!4.59!MECOM;;chr5:88178983..88179012,-!p1@MEF2C!0.63!29.83!MEF2C;;chr2:208031943..208031978,-!p5@KLF7!0.63!4.59!KLF7;;chr4:81104958..81104981,+!p5@PRDM8!0.63!4.02!PRDM8;;chr11:46299186..46299195,+!p3@CREB3L1!0.63!3.73!CREB3L1;;chrX:128657457..128657475,-!p1@SMARCA1!0.62!43.60!SMARCA1;;chr5:176738887..176738934,-!p1@MXD3!0.62!25.24!MXD3;;chr1:161736038..161736056,+!p4@ATF6!0.62!8.32!ATF6;;chr2:121493492..121493537,+!p2@GLI2!0.62!5.74!GLI2;;chr1:151043070..151043110,+!p3@GABPB2!0.62!5.45!GABPB2;;chr5:43067636..4306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| ||
|ffid_belonging_in_development=CL:0000134 | |||
|fonse_cell_line= | |fonse_cell_line= | ||
|fonse_cell_line_closure= | |fonse_cell_line_closure= | ||
| Line 35: | Line 43: | ||
|fonse_treatment_closure= | |fonse_treatment_closure= | ||
|has_quality= | |has_quality= | ||
|hg19bam=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.fractionation.hCAGE/Fibroblast%2520-%2520Aortic%2520Adventitial%252c%2520donor3%2520%2528nuclear%2520fraction%2529.CNhs12400.14311-155C9.hg19.nobarcode.bam | |||
|hg19ctss=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.fractionation.hCAGE/Fibroblast%2520-%2520Aortic%2520Adventitial%252c%2520donor3%2520%2528nuclear%2520fraction%2529.CNhs12400.14311-155C9.hg19.ctss.bed.gz | |||
|hg19fasta=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.fractionation.hCAGE/Fibroblast%2520-%2520Aortic%2520Adventitial%252c%2520donor3%2520%2528nuclear%2520fraction%2529.CNhs12400.14311-155C9.hg19.nobarcode.rdna.fa.gz | |||
|hg38bam=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.fractionation.hCAGE/Fibroblast%2520-%2520Aortic%2520Adventitial%252c%2520donor3%2520%2528nuclear%2520fraction%2529.CNhs12400.14311-155C9.hg38.nobarcode.bam | |||
|hg38ctss=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.fractionation.hCAGE/Fibroblast%2520-%2520Aortic%2520Adventitial%252c%2520donor3%2520%2528nuclear%2520fraction%2529.CNhs12400.14311-155C9.hg38.nobarcode.ctss.bed.gz | |||
|id=FF:14311-155C9 | |id=FF:14311-155C9 | ||
|is_a=EFO:0002091;;FF: | |is_a=EFO:0002091;;FF:0000666 | ||
|is_obsolete= | |||
|library_id=CNhs12400 | |||
|library_id_phase_based=2:CNhs12400 | |||
|microRNAs= | |||
|microRNAs_nn= | |||
|microRNAs_nonnovel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer/#/human#cage;sample;14311 | |||
|microRNAs_nonnovel_srna=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2016/vis_viewer/#/human#srna;sample;SRhi10015.GGTAGC.14311 | |||
|microRNAs_novel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer_novel/#/human#cage;sample;14311 | |||
|microRNAs_novel_srna=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2016/vis_viewer_novel/#/human#srna;sample;SRhi10015.GGTAGC.14311 | |||
|name=Fibroblast - Aortic Adventitial, donor3 (nuclear fraction) | |name=Fibroblast - Aortic Adventitial, donor3 (nuclear fraction) | ||
|namespace=FANTOM5 | |namespace=FANTOM5 | ||
| Line 42: | Line 64: | ||
|profile_cagescan=,,, | |profile_cagescan=,,, | ||
|profile_hcage=CNhs12400,LSID914,release011,COMPLETED | |profile_hcage=CNhs12400,LSID914,release011,COMPLETED | ||
|profile_rnaseq= | |profile_rnaseq= | ||
|profile_srnaseq=,,, | |profile_srnaseq=,,, | ||
|refex=http://refex.dbcls.jp/genelist.php?lang | |||
|repeat_enrich_byfamily=0,0,0.054761705771024,0,0,0,0,0.109313946398475,0,-0.165309886664043,0.895342414424625,0,0,0,0,0,0,0,0,0,0,0,0.196914560204395,0,0.0435915498559676,0,0,0,0,0,0.998029210579938,0,0,0.614407507731688,0,0,0,0,0,0,0,0,0,0,0.196914560204395,0,0.0472769048114813,0.724484715943237,0.196914560204395,0,0.109523411542048,0,0,0,0,0.074242258989363,0,0,0,0.587527580809895,0,0,0,0.23490976400982,0,0,0.337388062750184,0.196914560204395,0,0,0,0,0,0,0,0,0,0,0,0,0.109523411542048,0,0,0,0.091129737111791,0,0,0,0.054761705771024,0,0,0.0330942519325563,0.357364754455066,0,0,-0.0315154532117434,0.137328093480103,0,0.724484715943237,0.13481598824243,0,0.171596625247154,0.491680124153683,0,0,0,0,0,0,0.517814948705737,0,0,0,0,0,0,0,0,0,0,0.12099225105918,0,0,0,-0.0562622698659916,-0.176398633129525,0,0,0.35230719721652,0,0,0 | |||
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| |||
|rna_box=155 | |rna_box=155 | ||
|rna_catalog_number=N/A | |rna_catalog_number=N/A | ||
| Line 56: | Line 81: | ||
|rna_tube_id=155C9 | |rna_tube_id=155C9 | ||
|rna_weight_ug=43.67385 | |rna_weight_ug=43.67385 | ||
|rnaseq_library_id=SRhi10015.GGTAGC | |||
|sample_age=19 | |sample_age=19 | ||
|sample_category=fractionations and perturbations | |||
|sample_cell_catalog=CC-7014 | |sample_cell_catalog=CC-7014 | ||
|sample_cell_line= | |sample_cell_line= | ||
| Line 77: | Line 104: | ||
|sample_tissue=aorta | |sample_tissue=aorta | ||
|top_motifs=EN1,2:2.50636393251;ALX4:2.41201517532;TAL1_TCF{3,4,12}:2.32348209803;XBP1:2.25880822024;HIF1A:2.1534338928;NKX3-1:2.11716130093;MYBL2:2.0648902996;ESR1:1.98597532661;HOX{A5,B5}:1.90440291481;UFEwm:1.78699163606;HMX1:1.78229946014;EVI1:1.76957610503;TEAD1:1.61826354389;IKZF1:1.57366762766;EBF1:1.5635909017;GLI1..3:1.54380831069;GCM1,2:1.44275861548;RXR{A,B,G}:1.32269200995;NKX2-1,4:1.2703263704;TLX1..3_NFIC{dimer}:1.26709106059;TLX2:1.26139263158;RXRA_VDR{dimer}:1.25258042331;KLF4:1.23470211418;HOX{A4,D4}:1.2038458059;EP300:1.17778570664;ATF6:1.17348263083;PRDM1:1.15393255138;HMGA1,2:1.14126368406;SOX17:1.13929698489;NFE2L1:1.13441524406;HSF1,2:1.07528265069;GTF2A1,2:0.991714955517;MTE{core}:0.990392342127;GTF2I:0.987554625812;FOXL1:0.980180653158;NANOG{mouse}:0.964992123683;POU3F1..4:0.934727039176;MAZ:0.910105010875;SMAD1..7,9:0.903184975728;MAFB:0.897107148587;GATA4:0.890875484393;MZF1:0.890082395715;TP53:0.867569480587;ZNF384:0.835741075602;AHR_ARNT_ARNT2:0.83456809888;MYFfamily:0.798166373447;XCPE1{core}:0.786525500574;ZIC1..3:0.779906987746;SPZ1:0.776006336841;GZF1:0.758557206163;GFI1B:0.754664519726;PAX1,9:0.746525308545;ZNF423:0.683339585445;TOPORS:0.64810772007;CDC5L:0.642666582208;NR3C1:0.640608909855;SP1:0.630935571608;SRF:0.607979983234;SREBF1,2:0.603483722181;STAT1,3:0.586735982249;bHLH_family:0.580254265118;RREB1:0.571388449881;PATZ1:0.567237798328;LHX3,4:0.553717681439;NFATC1..3:0.549121577343;TEF:0.527789387678;HLF:0.523524089107;ELK1,4_GABP{A,B1}:0.522266425258;TFAP4:0.521369333126;SOX2:0.517718273655;ZNF238:0.512553004839;ZNF143:0.499830830393;NRF1:0.472012734842;MED-1{core}:0.459136771121;PAX5:0.426762428233;AIRE:0.421394979547;HOX{A6,A7,B6,B7}:0.412645951948;ZBTB6:0.409875734713;GFI1:0.386080329137;PAX4:0.383561009611;MYB:0.376004552641;CREB1:0.310302158382;STAT2,4,6:0.30927061486;PAX3,7:0.259348484068;NKX3-2:0.258693243473;CEBPA,B_DDIT3:0.258123624661;DBP:0.22165016237;HES1:0.201744449254;FOXN1:0.196165224658;NFY{A,B,C}:0.191350697424;TFAP2B:0.17534783734;ZFP161:0.171096007086;FOSL2:0.154988933599;AR:0.152090284727;PAX8:0.15022639386;NKX2-2,8:0.127251774739;RFX1:0.122456168773;PAX2:0.122303970593;ARID5B:0.121381074845;ADNP_IRX_SIX_ZHX:0.108992558294;HIC1:0.0870361423493;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:0.0846763832379;ZNF148:0.084549131163;TBX4,5:0.0801737171224;BPTF:0.0760568901477;ZBTB16:0.0633241668797;NHLH1,2:0.0507562370892;NFE2L2:0.036328081737;TFAP2{A,C}:0.0267379030765;FOXP1:0.0165204446476;FOXD3:0.00152431110469;FOS_FOS{B,L1}_JUN{B,D}:-0.0100085489528;YY1:-0.0136147090772;ATF5_CREB3:-0.0173634579613;E2F1..5:-0.0381345098384;TFDP1:-0.0455427280598;BACH2:-0.046350975426;ATF4:-0.0648868197166;SOX{8,9,10}:-0.0727766165302;HNF1A:-0.0919281262238;HBP1_HMGB_SSRP1_UBTF:-0.0923879918441;FOXO1,3,4:-0.097551070688;IRF1,2:-0.152182050798;NFIX:-0.187396905474;ELF1,2,4:-0.194132976412;NFE2:-0.224872936905;POU1F1:-0.235652944757;VSX1,2:-0.245322462562;ATF2:-0.264713774047;NR1H4:-0.271085546371;RUNX1..3:-0.281514328598;POU5F1:-0.311374292206;TBP:-0.339633824189;PPARG:-0.340669160887;IRF7:-0.342576106251;EGR1..3:-0.353527392585;LEF1_TCF7_TCF7L1,2:-0.366543267477;FOX{D1,D2}:-0.371981987978;HOXA9_MEIS1:-0.394284364151;MEF2{A,B,C,D}:-0.406933377512;HAND1,2:-0.420752951893;ONECUT1,2:-0.422119570795;LMO2:-0.432798238996;ALX1:-0.434640303799;SPI1:-0.469107883785;HNF4A_NR2F1,2:-0.470043721704;SOX5:-0.482765723459;TGIF1:-0.493909737214;CDX1,2,4:-0.496032706119;RBPJ:-0.518726779234;TFCP2:-0.529194007758;GATA6:-0.542168971304;NFKB1_REL_RELA:-0.545456060932;REST:-0.579096335677;PAX6:-0.633571826347;ETS1,2:-0.646542121882;FOXA2:-0.650382380163;SPIB:-0.679592352245;NFIL3:-0.743714730979;NR6A1:-0.754445595014;FOX{I1,J2}:-0.781462657878;PITX1..3:-0.817529884657;BREu{core}:-0.862756975991;NKX6-1,2:-0.874268866378;FOXP3:-0.876446212368;PBX1:-0.881021006717;MTF1:-0.885342344658;CRX:-0.933738955043;POU6F1:-0.998345891869;JUN:-1.00118645749;RFX2..5_RFXANK_RFXAP:-1.03660078638;ESRRA:-1.05407514195;DMAP1_NCOR{1,2}_SMARC:-1.05679546644;SNAI1..3:-1.11271379249;ZEB1:-1.19306389847;NANOG:-1.2286190027;STAT5{A,B}:-1.30387882031;NKX2-3_NKX2-5:-1.36109052085;PRRX1,2:-1.38384588557;CUX2:-1.38920767702;NR5A1,2:-1.39283412505;POU2F1..3:-1.44419157472;OCT4_SOX2{dimer}:-1.4691240292;IKZF2:-1.47391223327;MYOD1:-1.48704947604;RXR{A,B,G}_{NR1H2,PPAR}dimers:-1.56113208187;FOX{F1,F2,J1}:-1.6402652683;RORA:-1.70047037866;FOXM1:-1.86232708379;PDX1:-1.87014265199;T:-2.46593517676;FOXQ1:-2.57385225708 | |top_motifs=EN1,2:2.50636393251;ALX4:2.41201517532;TAL1_TCF{3,4,12}:2.32348209803;XBP1:2.25880822024;HIF1A:2.1534338928;NKX3-1:2.11716130093;MYBL2:2.0648902996;ESR1:1.98597532661;HOX{A5,B5}:1.90440291481;UFEwm:1.78699163606;HMX1:1.78229946014;EVI1:1.76957610503;TEAD1:1.61826354389;IKZF1:1.57366762766;EBF1:1.5635909017;GLI1..3:1.54380831069;GCM1,2:1.44275861548;RXR{A,B,G}:1.32269200995;NKX2-1,4:1.2703263704;TLX1..3_NFIC{dimer}:1.26709106059;TLX2:1.26139263158;RXRA_VDR{dimer}:1.25258042331;KLF4:1.23470211418;HOX{A4,D4}:1.2038458059;EP300:1.17778570664;ATF6:1.17348263083;PRDM1:1.15393255138;HMGA1,2:1.14126368406;SOX17:1.13929698489;NFE2L1:1.13441524406;HSF1,2:1.07528265069;GTF2A1,2:0.991714955517;MTE{core}:0.990392342127;GTF2I:0.987554625812;FOXL1:0.980180653158;NANOG{mouse}:0.964992123683;POU3F1..4:0.934727039176;MAZ:0.910105010875;SMAD1..7,9:0.903184975728;MAFB:0.897107148587;GATA4:0.890875484393;MZF1:0.890082395715;TP53:0.867569480587;ZNF384:0.835741075602;AHR_ARNT_ARNT2:0.83456809888;MYFfamily:0.798166373447;XCPE1{core}:0.786525500574;ZIC1..3:0.779906987746;SPZ1:0.776006336841;GZF1:0.758557206163;GFI1B:0.754664519726;PAX1,9:0.746525308545;ZNF423:0.683339585445;TOPORS:0.64810772007;CDC5L:0.642666582208;NR3C1:0.640608909855;SP1:0.630935571608;SRF:0.607979983234;SREBF1,2:0.603483722181;STAT1,3:0.586735982249;bHLH_family:0.580254265118;RREB1:0.571388449881;PATZ1:0.567237798328;LHX3,4:0.553717681439;NFATC1..3:0.549121577343;TEF:0.527789387678;HLF:0.523524089107;ELK1,4_GABP{A,B1}:0.522266425258;TFAP4:0.521369333126;SOX2:0.517718273655;ZNF238:0.512553004839;ZNF143:0.499830830393;NRF1:0.472012734842;MED-1{core}:0.459136771121;PAX5:0.426762428233;AIRE:0.421394979547;HOX{A6,A7,B6,B7}:0.412645951948;ZBTB6:0.409875734713;GFI1:0.386080329137;PAX4:0.383561009611;MYB:0.376004552641;CREB1:0.310302158382;STAT2,4,6:0.30927061486;PAX3,7:0.259348484068;NKX3-2:0.258693243473;CEBPA,B_DDIT3:0.258123624661;DBP:0.22165016237;HES1:0.201744449254;FOXN1:0.196165224658;NFY{A,B,C}:0.191350697424;TFAP2B:0.17534783734;ZFP161:0.171096007086;FOSL2:0.154988933599;AR:0.152090284727;PAX8:0.15022639386;NKX2-2,8:0.127251774739;RFX1:0.122456168773;PAX2:0.122303970593;ARID5B:0.121381074845;ADNP_IRX_SIX_ZHX:0.108992558294;HIC1:0.0870361423493;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:0.0846763832379;ZNF148:0.084549131163;TBX4,5:0.0801737171224;BPTF:0.0760568901477;ZBTB16:0.0633241668797;NHLH1,2:0.0507562370892;NFE2L2:0.036328081737;TFAP2{A,C}:0.0267379030765;FOXP1:0.0165204446476;FOXD3:0.00152431110469;FOS_FOS{B,L1}_JUN{B,D}:-0.0100085489528;YY1:-0.0136147090772;ATF5_CREB3:-0.0173634579613;E2F1..5:-0.0381345098384;TFDP1:-0.0455427280598;BACH2:-0.046350975426;ATF4:-0.0648868197166;SOX{8,9,10}:-0.0727766165302;HNF1A:-0.0919281262238;HBP1_HMGB_SSRP1_UBTF:-0.0923879918441;FOXO1,3,4:-0.097551070688;IRF1,2:-0.152182050798;NFIX:-0.187396905474;ELF1,2,4:-0.194132976412;NFE2:-0.224872936905;POU1F1:-0.235652944757;VSX1,2:-0.245322462562;ATF2:-0.264713774047;NR1H4:-0.271085546371;RUNX1..3:-0.281514328598;POU5F1:-0.311374292206;TBP:-0.339633824189;PPARG:-0.340669160887;IRF7:-0.342576106251;EGR1..3:-0.353527392585;LEF1_TCF7_TCF7L1,2:-0.366543267477;FOX{D1,D2}:-0.371981987978;HOXA9_MEIS1:-0.394284364151;MEF2{A,B,C,D}:-0.406933377512;HAND1,2:-0.420752951893;ONECUT1,2:-0.422119570795;LMO2:-0.432798238996;ALX1:-0.434640303799;SPI1:-0.469107883785;HNF4A_NR2F1,2:-0.470043721704;SOX5:-0.482765723459;TGIF1:-0.493909737214;CDX1,2,4:-0.496032706119;RBPJ:-0.518726779234;TFCP2:-0.529194007758;GATA6:-0.542168971304;NFKB1_REL_RELA:-0.545456060932;REST:-0.579096335677;PAX6:-0.633571826347;ETS1,2:-0.646542121882;FOXA2:-0.650382380163;SPIB:-0.679592352245;NFIL3:-0.743714730979;NR6A1:-0.754445595014;FOX{I1,J2}:-0.781462657878;PITX1..3:-0.817529884657;BREu{core}:-0.862756975991;NKX6-1,2:-0.874268866378;FOXP3:-0.876446212368;PBX1:-0.881021006717;MTF1:-0.885342344658;CRX:-0.933738955043;POU6F1:-0.998345891869;JUN:-1.00118645749;RFX2..5_RFXANK_RFXAP:-1.03660078638;ESRRA:-1.05407514195;DMAP1_NCOR{1,2}_SMARC:-1.05679546644;SNAI1..3:-1.11271379249;ZEB1:-1.19306389847;NANOG:-1.2286190027;STAT5{A,B}:-1.30387882031;NKX2-3_NKX2-5:-1.36109052085;PRRX1,2:-1.38384588557;CUX2:-1.38920767702;NR5A1,2:-1.39283412505;POU2F1..3:-1.44419157472;OCT4_SOX2{dimer}:-1.4691240292;IKZF2:-1.47391223327;MYOD1:-1.48704947604;RXR{A,B,G}_{NR1H2,PPAR}dimers:-1.56113208187;FOX{F1,F2,J1}:-1.6402652683;RORA:-1.70047037866;FOXM1:-1.86232708379;PDX1:-1.87014265199;T:-2.46593517676;FOXQ1:-2.57385225708 | ||
|xref= | |||
|zenbu_report=https://fantom.gsc.riken.jp/zenbu/reports/#miRNA_expression_atlas_human;search_select_hide=table111:FF:14311-155C9;search_select_hide=table117:FF:14311-155C9 | |||
}} | }} | ||
Latest revision as of 19:06, 4 June 2020
| Name: | Fibroblast - Aortic Adventitial, donor3 (nuclear fraction) |
|---|---|
| Species: | Human (Homo sapiens) |
| Library ID: | CNhs12400 |
| Sample type: | fractionations and perturbations |
| Genomic View: | UCSC |
| RefEX: | Specific genes |
| CAGEd-oPOSSUM: | link |
| ZENBU report : | link |
| Additional information | ||||||||||||||||||||||||||||
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Sample information
RNA information
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| CAGE Accession numbers | ||||||||||||||||||||||||||||||||||||||||||||||
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| Download raw sequence, BAM & CTSS | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
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| RNA-Seq Accession numbers | ||||||||||||||||||||||||||||||||
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Relative expression to median (log10)
Transcription factors with enriched expression in this sampleRanked list of transcription factor promoter expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.
Co-expression clusters with enriched expression in this sampleRanked list of co-expression cluster expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed. <br>Analyst:NA <br><br>link to dataset.<br>data
Repeat families with enriched expression in this sample<b>Summary:</b>Ranked list of repeat family expression in this sample relative tothe median expression in the FANTOM5 collection is shown. Value is log10transformed.<br><b>Analyst:</b>NA<br><br>link to dataset.<br>data
TFBS(DNA)motifs over-represented in proximal region of promoters active in this sample
JASPAR motifs<b>Summary:</b>Association of JASPAR motif to the promoter expression in thissample. Pearson's correlation between the number of TFBSs estimated byusing the position-weight matrix for each promoter and its expression isexpressed as Z-score by taking the ones based on random position-weightmatrix, and the tail probability of the normal distribution correspondingto the Z-score is taken as the resulting P-value. Lower P-value indicatesmore (non-random) association of the motif to promoter expression<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data
library id: CNhs12400
FANTOM5 phase1 novel unique motifs<b>Summary:</b>Association of the 169 novel and unique motifs discovered in FANTOM5 phase1 in this sample. Among the de-novo motifs discovered by DMF, HOMER,ChIPMunk, and ScanAll, only novel motifs are selected after comparison with known motif sets, and their clustering based on MACRO-APE resulted in169 novel and unique motifs. Their association to the promoter expression is evaluated in the same way to the JASPAR motif above<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data
library id: CNhs12400
| Novel motif | Logo | P-value |
|---|---|---|
| 1 | 1 | 0.0759 |
| 10 | 10 | 0.338 |
| 100 | 100 | 0.929 |
| 101 | 101 | 0.405 |
| 102 | 102 | 0.358 |
| 103 | 103 | 0.372 |
| 104 | 104 | 0.994 |
| 105 | 105 | 0.0536 |
| 106 | 106 | 0.0131 |
| 107 | 107 | 0.607 |
| 108 | 108 | 0.591 |
| 109 | 109 | 0.119 |
| 11 | 11 | 0.145 |
| 110 | 110 | 0.803 |
| 111 | 111 | 0.0193 |
| 112 | 112 | 0.42 |
| 113 | 113 | 0.0483 |
| 114 | 114 | 0.103 |
| 115 | 115 | 0.098 |
| 116 | 116 | 0.912 |
| 117 | 117 | 0.354 |
| 118 | 118 | 0.44 |
| 119 | 119 | 0.0738 |
| 12 | 12 | 0.416 |
| 120 | 120 | 0.965 |
| 121 | 121 | 0.93 |
| 122 | 122 | 0.061 |
| 123 | 123 | 0.00559 |
| 124 | 124 | 0.0348 |
| 125 | 125 | 0.174 |
| 126 | 126 | 0.203 |
| 127 | 127 | 0.0217 |
| 128 | 128 | 0.0424 |
| 129 | 129 | 0.213 |
| 13 | 13 | 0.335 |
| 130 | 130 | 0.974 |
| 131 | 131 | 0.893 |
| 132 | 132 | 0.503 |
| 133 | 133 | 0.853 |
| 134 | 134 | 0.866 |
| 135 | 135 | 0.312 |
| 136 | 136 | 0.896 |
| 137 | 137 | 0.564 |
| 138 | 138 | 0.419 |
| 139 | 139 | 0.175 |
| 14 | 14 | 0.348 |
| 140 | 140 | 0.485 |
| 141 | 141 | 0.783 |
| 142 | 142 | 0.649 |
| 143 | 143 | 0.0394 |
| 144 | 144 | 0.809 |
| 145 | 145 | 0.309 |
| 146 | 146 | 0.459 |
| 147 | 147 | 0.191 |
| 148 | 148 | 0.0503 |
| 149 | 149 | 0.279 |
| 15 | 15 | 0.0716 |
| 150 | 150 | 0.82 |
| 151 | 151 | 0.21 |
| 152 | 152 | 0.173 |
| 153 | 153 | 0.328 |
| 154 | 154 | 0.902 |
| 155 | 155 | 0.0406 |
| 156 | 156 | 0.119 |
| 157 | 157 | 0.562 |
| 158 | 158 | 0.0583 |
| 159 | 159 | 0.937 |
| 16 | 16 | 0.917 |
| 160 | 160 | 0.0456 |
| 161 | 161 | 0.742 |
| 162 | 162 | 0.949 |
| 163 | 163 | 0.718 |
| 164 | 164 | 0.387 |
| 165 | 165 | 0.724 |
| 166 | 166 | 0.036 |
| 167 | 167 | 0.192 |
| 168 | 168 | 0.207 |
| 169 | 169 | 0.425 |
| 17 | 17 | 0.461 |
| 18 | 18 | 0.553 |
| 19 | 19 | 0.602 |
| 2 | 2 | 0.624 |
| 20 | 20 | 0.864 |
| 21 | 21 | 0.899 |
| 22 | 22 | 0.662 |
| 23 | 23 | 0.756 |
| 24 | 24 | 0.199 |
| 25 | 25 | 0.0994 |
| 26 | 26 | 0.971 |
| 27 | 27 | 0.342 |
| 28 | 28 | 0.58 |
| 29 | 29 | 0.694 |
| 3 | 3 | 0.301 |
| 30 | 30 | 0.745 |
| 31 | 31 | 0.806 |
| 32 | 32 | 6.61488e-10 |
| 33 | 33 | 0.604 |
| 34 | 34 | 0.741 |
| 35 | 35 | 0.27 |
| 36 | 36 | 0.0137 |
| 37 | 37 | 0.404 |
| 38 | 38 | 0.225 |
| 39 | 39 | 0.919 |
| 4 | 4 | 0.135 |
| 40 | 40 | 0.0525 |
| 41 | 41 | 0.0442 |
| 42 | 42 | 0.146 |
| 43 | 43 | 0.234 |
| 44 | 44 | 0.792 |
| 45 | 45 | 0.48 |
| 46 | 46 | 0.323 |
| 47 | 47 | 0.155 |
| 48 | 48 | 0.402 |
| 49 | 49 | 0.0481 |
| 5 | 5 | 0.373 |
| 50 | 50 | 0.943 |
| 51 | 51 | 0.28 |
| 52 | 52 | 0.351 |
| 53 | 53 | 0.144 |
| 54 | 54 | 0.439 |
| 55 | 55 | 0.679 |
| 56 | 56 | 0.243 |
| 57 | 57 | 0.364 |
| 58 | 58 | 0.123 |
| 59 | 59 | 0.352 |
| 6 | 6 | 0.833 |
| 60 | 60 | 0.152 |
| 61 | 61 | 0.22 |
| 62 | 62 | 0.0609 |
| 63 | 63 | 0.488 |
| 64 | 64 | 0.182 |
| 65 | 65 | 0.255 |
| 66 | 66 | 0.244 |
| 67 | 67 | 0.814 |
| 68 | 68 | 0.584 |
| 69 | 69 | 0.589 |
| 7 | 7 | 0.0864 |
| 70 | 70 | 0.0575 |
| 71 | 71 | 0.398 |
| 72 | 72 | 0.355 |
| 73 | 73 | 0.201 |
| 74 | 74 | 0.422 |
| 75 | 75 | 0.287 |
| 76 | 76 | 0.701 |
| 77 | 77 | 0.717 |
| 78 | 78 | 0.0248 |
| 79 | 79 | 0.0714 |
| 8 | 8 | 0.204 |
| 80 | 80 | 0.187 |
| 81 | 81 | 0.431 |
| 82 | 82 | 0.0906 |
| 83 | 83 | 0.0537 |
| 84 | 84 | 0.558 |
| 85 | 85 | 0.391 |
| 86 | 86 | 0.784 |
| 87 | 87 | 0.838 |
| 88 | 88 | 0.522 |
| 89 | 89 | 0.652 |
| 9 | 9 | 0.9 |
| 90 | 90 | 0.0337 |
| 91 | 91 | 0.538 |
| 92 | 92 | 0.55 |
| 93 | 93 | 0.286 |
| 94 | 94 | 0.127 |
| 95 | 95 | 0.104 |
| 96 | 96 | 0.0426 |
| 97 | 97 | 0.258 |
| 98 | 98 | 0.00615 |
| 99 | 99 | 0.501 |
de novo motifs identified by HOMER in promoters active in this sample<b>Summary:</b>The result of HOMER in this sample is shown.<br><b>Analyst:</b>NA <br>
library id: CNhs12400
FANTOM5 (FF) ontology
Direct parent terms
is_a relathionship
EFO:0002091 biological replicate
FF:0000666 human Fibroblast - Aortic Adventitial, nuclear fraction sample
Ancestor terms (non development)<b>Summary:</b>Connected ontology terms with is_a, part_of or located_in relationship <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source data<br>data
CL: Cell type
0000000 (cell), 0000000 (cell)
0000003 (native cell)
0000548 (animal cell)
0002320 (connective tissue cell)
0002371 (somatic cell)
0000255 (eukaryotic cell)
0000057 (fibroblast)
1000306 (fibroblast of tunica adventitia of artery)
0002547 (fibroblast of the aortic adventitia)
UBERON: Anatomy
0000468 (multi-cellular organism)
0000947 (aorta)
0001637 (artery)
0000483 (epithelium)
0002384 (connective tissue)
0000479 (tissue)
0000055 (vessel)
0000064 (organ part)
0000062 (organ)
0004111 (anatomical conduit)
0004120 (mesoderm-derived structure)
0000061 (anatomical structure)
0000465 (material anatomical entity)
0003914 (epithelial tube)
0000025 (tube)
0004923 (organ component layer)
0000477 (anatomical cluster)
0000467 (anatomical system)
0000060 (anatomical wall)
0001062 (anatomical entity)
0000480 (anatomical group)
0000119 (cell layer)
0004573 (systemic artery)
0003509 (arterial blood vessel)
0007500 (epithelial tube open at both ends)
0001981 (blood vessel)
0002049 (vasculature)
0004797 (blood vessel layer)
0010317 (germ layer / neural crest derived structure)
0007798 (vascular system)
0000415 (artery wall)
0007240 (tunica adventitia of artery)
0005742 (adventitia)
0005734 (tunica adventitia of blood vessel)
0004664 (aorta tunica adventitia)
0004535 (cardiovascular system)
0004571 (systemic arterial system)
0010191 (aortic system)
0004572 (arterial system)
0004537 (blood vasculature)
0001009 (circulatory system)
0004663 (aorta wall)
FF: FANTOM5
0000102 (sample by type)
0000210 (human sample)
0000002 (in vivo cell sample)
0000101 (sample by species)
0000057 (fibroblast sample)
0000001 (sample)
0000408 (cellular fractionation sample)
0000350 (experimentally modified sample)
0000058 (human fibroblast of the aortic adventitia sample)
0000406 (nuclear fraction sample)
0000666 (human Fibroblast - Aortic Adventitial, nuclear fraction sample)
Ancestor terms (development)<b>Summary:</b>Connected ontology terms with develops_from, derives_from or preceded_by relationship <br><b>Analyst:</b> Hideya Kawaji <br><br>link to source data<br>data
CL:0000134 (mesenchymal cell)
