FF:10405-106A9: Difference between revisions
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{{f5samples | {{f5samples | ||
|ancestors_in_anatomy_facet= | |DRA_sample_Accession=CAGE@SAMD00004824 | ||
|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003 | |accession_numbers=CAGE;DRX007815;DRR008687;DRZ000112;DRZ001497;DRZ011462;DRZ012847 | ||
|ancestors_in_anatomy_facet= | |||
|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000988,CL:0000548,CL:0000763,CL:0002371,CL:0000766,CL:0000219,CL:0000738,CL:0002087,CL:0000255,CL:0000576 | |||
|ancestors_in_disease_facet=DOID:4,DOID:0050686,DOID:162,DOID:2531,DOID:14566,DOID:0060083,DOID:1240,DOID:8692 | |ancestors_in_disease_facet=DOID:4,DOID:0050686,DOID:162,DOID:2531,DOID:14566,DOID:0060083,DOID:1240,DOID:8692 | ||
|ancestors_in_ff_facet=FF:0000102,FF:0000003,FF:0000210,FF:0000101,FF:0000001,FF:0100737,FF:0101370,FF:0101035,FF:0101883,FF:0102332,FF:0100740 | |||
|comment= | |comment= | ||
|created_by= | |created_by= | ||
|creation_date= | |creation_date= | ||
|data_phase=2 | |||
|datafreeze_phase=2 | |||
|def= | |def= | ||
|expression_enrichment_score=chr16:85932760..85932775,+!p1@IRF8!2.52!330.36!IRF8;;chr11:47400078..47400106,-!p1@SPI1!2.28!191.71!SPI1;;chr6:135502501..135502546,+!p1@MYB!2.04!130.64!MYB;;chr2:68592406..68592424,+!p1@PLEK!1.99!96.94!PLEK;;chr9:96717629..96717644,-!p1@BARX1!1.86!70.91!BARX1;;chr12:54778471..54778528,-!p1@ZNF385A!1.86!70.74!ZNF385A;;chr7:115670804..115670825,-!p1@TFEC!1.76!56.56!TFEC;;chr6:135502408..135502459,+!p2@MYB!1.72!58.73!MYB;;chr2:63277948..63277974,+!p1@OTX1!1.71!49.72!OTX1;;chr19:33793430..33793447,-!p1@CEBPA!1.69!194.38!CEBPA;;chr3:18486354..18486377,-!p2@SATB1!1.69!58.90!SATB1;;chr1:92951607..92951661,-!p1@GFI1!1.59!38.04!GFI1;;chr13:72441315..72441454,-!p1@DACH1!1.58!71.91!DACH1;;chr1:92949331..92949377,-!p2@GFI1!1.57!36.37!GFI1;;chr2:200322654..200322707,-!p2@SATB2!1.53!47.72!SATB2;;chr10:31288398..31288455,-!p2@ZNF438!1.50!35.87!ZNF438;;chr1:156460436..156460462,-!p7@MEF2D!1.50!30.87!MEF2D;;chr1:41157421..41157482,+!p2@NFYC!1.43!285.98!NFYC;;chr7:50344289..50344323,+!p1@IKZF1!1.43!26.03!IKZF1;;chr1:41157363..41157416,+!p1@NFYC!1.42!460.17!NFYC;;chr7:137620650..137620677,-!p3@CREB3L2!1.42!25.19!CREB3L2;;chr2:175199675..175199688,+!p1@SP9!1.41!24.86!SP9;;chr11:47400062..47400077,-!p2@SPI1!1.41!24.53!SPI1;;chr6:135516877..135516900,+!p5@MYB!1.39!23.36!MYB;;chr5:72744594..72744609,-!p1@FOXD1!1.37!99.11!FOXD1;;chr5:88178983..88179012,-!p1@MEF2C!1.35!160.34!MEF2C;;chr6:85473156..85473210,-!p2@TBX18!1.34!25.53!TBX18;;chr1:40997285..40997352,+!p1@ZNF684!1.33!70.58!ZNF684;;chr1:40942922..40942997,+!p1@ZNF642!1.33!52.39!ZNF642;;chr1:40997363..40997392,+!p2@ZNF684!1.32!25.69!ZNF684;;chr7:27205136..27205164,-!p1@HOXA9!1.32!19.86!HOXA9;;chr7:137620684..137620711,-!p4@CREB3L2!1.32!19.69!CREB3L2;;chr6:34204973..34204990,+!p4@HMGA1!1.29!236.76!HMGA1;;chr7:113726357..113726443,+!p1@FOXP2!1.29!31.87!FOXP2;;chr2:145277640..145277771,-!p1@ZEB2!1.28!235.59!ZEB2;;chr6:135502472..135502489,+!p3@MYB!1.28!18.02!MYB;;chr2:63277978..63277995,+!p2@OTX1!1.27!17.69!OTX1;;chr1:156470515..156470542,-!p2@MEF2D!1.26!87.93!MEF2D;;chr1:3569072..3569093,+!p1@TP73!1.26!17.35!TP73;;chr1:50889103..50889145,-!p1@DMRTA2!1.26!17.02!DMRTA2;;chr18:55102598..55102623,+!p1@ONECUT2!1.25!16.68!ONECUT2;;chr1:247171316..247171336,-!p3@ZNF695!1.24!24.19!ZNF695;;chr7:27205106..27205134,-!p2@HOXA9!1.24!16.52!HOXA9;;chr7:27213893..27213954,-!p1@HOXA10!1.24!16.52!HOXA10;;chr7:27224795..27224840,-!p2@HOXA11!1.24!16.35!HOXA11;;chr7:27224842..27224872,-!p1@HOXA11!1.23!16.02!HOXA11;;chr11:47399996..47400014,-!p4@SPI1!1.22!15.52!SPI1;;chr18:22932080..22932170,-!p1@ZNF521!1.21!63.40!ZNF521;;chr14:75988771..75988826,+!p1@BATF!1.21!20.36!BATF;;chr6:135516909..135516925,+!p6@MYB!1.21!15.18!MYB;;chr16:54319010..54319041,-!p8@IRX3!1.19!14.52!IRX3;;chr3:18480217..18480239,-!p3@SATB1!1.19!14.35!SATB1;;chr7:50343634..50343717,+!p2@IKZF1!1.18!14.02!IKZF1;;chr3:157824001..157824078,-!p2@SHOX2!1.17!13.85!SHOX2;;chr1:247242048..247242098,-!p1@ZNF670,p1@ZNF695!1.16!48.39!ZNF670;;chr7:128577972..128578047,+!p1@IRF5!1.16!21.36!IRF5;;chr18:22805268..22805280,-!p8@ZNF521!1.16!13.35!ZNF521;;chr1:92952473..92952489,-!p3@GFI1!1.15!13.01!GFI1;;chr3:157824202..157824211,-!p3@SHOX2!1.15!13.01!SHOX2;;chr2:68592394..68592405,+!p2@PLEK!1.14!12.68!PLEK;;chr1:156460473..156460486,-!p12@MEF2D!1.14!12.68!MEF2D;;chr10:31288370..31288393,-!p3@ZNF438!1.13!12.51!ZNF438;;chr13:41593425..41593480,-!p1@ELF1!1.11!75.75!ELF1;;chr20:42295745..42295765,+!p1@MYBL2!1.10!187.37!MYBL2;;chr11:47399947..47399961,-!p3@SPI1!1.09!11.35!SPI1;;chr16:54320646..54320672,-!p2@IRX3!1.07!16.52!IRX3;;chr18:55102628..55102646,+!p2@ONECUT2!1.06!10.51!ONECUT2;;chrY:21906594..21906622,-!p1@KDM5D!1.06!10.51!KDM5D;;chr17:41277372..41277418,-!p1@BRCA1!1.05!37.21!BRCA1;;chr2:175199697..175199706,+!p2@SP9!1.05!10.34!SP9;;chr20:42295713..42295738,+!p2@MYBL2!1.04!59.06!MYBL2;;chr1:167298300..167298319,+!p2@POU2F1!1.04!10.01!POU2F1;;chr2:200322229..200322251,-!p3@SATB2!1.04!9.84!SATB2;;chr17:79881332..79881348,-!p3@MAFG!1.03!14.18!MAFG;;chr16:54320617..54320643,-!p3@IRX3!1.03!12.68!IRX3;;chr17:48072574..48072597,-!p1@DLX3!1.02!9.51!DLX3;;chr7:50344251..50344288,+!p3@IKZF1!1.01!9.18!IKZF1;;chr2:100759037..100759058,-!p2@AFF3!1.00!9.01!AFF3;;chr13:72441074..72441172,-!p2@DACH1!0.99!8.84!DACH1;;chr1:167298384..167298412,+!p3@POU2F1!0.99!8.68!POU2F1;;chr1:40627038..40627071,+!p1@RLF!0.98!113.96!RLF;;chr15:57511609..57511651,+!p2@TCF12!0.98!14.52!TCF12;;chr11:128563948..128564003,+!p1@FLI1!0.97!103.78!FLI1;;chr19:13213662..13213686,-!p1@LYL1!0.96!12.18!LYL1;;chr1:156470494..156470505,-!p3@MEF2D!0.96!12.01!MEF2D;;chr11:47400032..47400043,-!p5@SPI1!0.96!8.18!SPI1;;chr16:54320158..54320200,-!p5@IRX3!0.95!11.68!IRX3;;chr10:135044190..135044229,+!p3@UTF1!0.95!8.01!UTF1;;chr7:27239703..27239715,-!p1@HOXA13!0.95!8.01!HOXA13;;chr9:1050331..1050363,+!p1@DMRT2!0.95!8.01!DMRT2;;chr1:92949505..92949543,-!p5@GFI1!0.95!7.84!GFI1;;chr16:54320675..54320715,-!p1@IRX3!0.93!16.85!IRX3;;chr2:185463247..185463263,+!p1@ZNF804A!0.93!13.51!ZNF804A;;chr3:18467290..18467311,-!p8@SATB1!0.93!7.51!SATB1;;chr16:54320280..54320291,-!p9@IRX3!0.93!7.51!IRX3;;chr1:41157266..41157314,+!p3@NFYC!0.92!64.90!NFYC;;chr7:64838786..64838809,+!p2@ZNF92!0.92!43.21!ZNF92;;chr12:54694758..54694805,-!p1@NFE2!0.92!8.84!NFE2;;chr19:13213954..13214021,-!p4@LYL1!0.92!7.34!LYL1;;chr2:145277882..145277967,-!p3@ZEB2!0.90!12.35!ZEB2;;chr20:21378152..21378169,-!p1@NKX2-4!0.90!7.01!NKX2-4;;chr1:247171347..247171366,-!p2@ZNF695!0.89!12.68!ZNF695;;chrX:66763856..66763896,+!p1@AR!0.89!10.01!AR;;chr19:23299814..23299844,+!p1@ZNF730!0.89!8.34!ZNF730;;chr2:200320768..200320800,-!p4@SATB2!0.89!6.67!SATB2;;chr19:20011744..20011770,+!p1@ZNF93!0.88!26.70!ZNF93;;chr19:22605097..22605121,-!p2@ZNF98!0.88!6.51!ZNF98;;chr19:50922187..50922204,+!p1@SPIB!0.88!6.51!SPIB;;chr21:34442439..34442455,+!p1@OLIG1!0.88!6.51!OLIG1;;chr19:22817119..22817145,+!p1@ZNF492!0.87!11.01!ZNF492;;chr2:145275947..145275981,-!p10@ZEB2!0.87!6.34!ZEB2;;chr7:19157248..19157268,-!p1@TWIST1!0.86!18.19!TWIST1;;chr6:45390300..45390335,+!p4@RUNX2!0.86!10.01!RUNX2;;chr16:54320101..54320125,-!p4@IRX3!0.86!9.18!IRX3;;chr16:54320322..54320343,-!p7@IRX3!0.85!6.01!IRX3;;chr2:100759010..100759035,-!p1@AFF3!0.85!6.01!AFF3;;chr21:36421535..36421610,-!p2@RUNX1!0.84!22.52!RUNX1;;chr6:45390269..45390298,+!p5@RUNX2!0.84!10.18!RUNX2;;chr7:35293685..35293718,-!p1@TBX20!0.84!5.84!TBX20;;chrY:2803415..2803468,+!p1@ZFY!0.84!5.84!ZFY;;chr19:22605136..22605154,-!p1@ZNF98!0.84!5.84!ZNF98;;chr12:54694807..54694832,-!p3@NFE2!0.84!5.84!NFE2;;chr13:100623375..100623425,-!p1@ZIC5!0.84!5.84!ZIC5;;chr5:88179017..88179046,-!p2@MEF2C!0.83!24.86!MEF2C;;chr6:144385698..144385742,-!p2@PLAGL1!0.83!7.17!PLAGL1;;chr7:64363638..64363667,+!p1@ZNF273!0.82!30.20!ZNF273;;chr1:47779762..47779827,-!p1@STIL,p1@TAL1!0.82!27.53!TAL1;;chr3:157823517..157823562,-!p1@SHOX2!0.82!6.01!SHOX2;;chr1:167298425..167298440,+!p8@POU2F1!0.82!5.67!POU2F1;;chr5:71803177..71803255,-!p1@ZNF366!0.82!5.67!ZNF366;;chr7:113726226..113726245,+!p3@FOXP2!0.82!5.67!FOXP2;;chr7:27239740..27239759,-!p2@HOXA13!0.82!5.67!HOXA13;;chr11:44331576..44331650,-!p1@ALX4!0.82!5.67!ALX4;;chr11:47400045..47400060,-!p6@SPI1!0.82!5.67!SPI1;;chr13:100634031..100634045,+!p1@ZIC2!0.82!5.67!ZIC2;;chr1:156460402..156460417,-!p22@MEF2D!0.81!5.51!MEF2D;;chr3:71630980..71631110,-!p3@FOXP1!0.80!19.86!FOXP1;;chr19:13213704..13213726,-!p3@LYL1!0.80!7.17!LYL1;;chr1:41157641..41157665,+!p7@NFYC!0.80!7.01!NFYC;;chr18:22804637..22804660,-!p10@ZNF521!0.80!5.34!ZNF521;;chr5:122424918..122424944,+!p1@PRDM6!0.80!5.34!PRDM6;;chr2:200325204..200325243,-!p7@SATB2!0.80!5.34!SATB2;;chr2:200322711..200322722,-!p10@SATB2!0.79!5.17!SATB2;;chr13:41593392..41593403,-!p7@ELF1!0.79!5.17!ELF1;;chr7:114054885..114054910,+!p4@FOXP2!0.79!5.17!FOXP2;;chr9:126774018..126774055,+!p1@LHX2!0.78!5.01!LHX2;;chr1:43148059..43148108,+!p1@YBX1!0.77!342.87!YBX1;;chr1:45805872..45805900,+!p2@TOE1!0.77!12.68!TOE1;;chr1:40367530..40367597,-!p1@MYCL1!0.77!9.34!MYCL1;;chr10:22292591..22292606,-!p2@DNAJC1!0.77!8.34!DNAJC1;;chrY:21906761..21906810,-!p2@KDM5D!0.77!4.84!KDM5D;;chr18:22931979..22931992,-!p3@ZNF521!0.77!4.84!ZNF521;;chr19:3574330..3574393,+!p2@HMG20B!0.77!4.84!HMG20B;;chr2:145275982..145276003,-!p7@ZEB2!0.77!4.84!ZEB2;;chr6:135513595..135513617,+!p4@MYB!0.77!4.84!MYB;;chr19:45971246..45971265,+!p1@FOSB!0.76!97.61!FOSB;;chr1:41157671..41157695,+!p6@NFYC!0.76!7.01!NFYC;;chr1:221052994..221053008,+!p6@HLX!0.76!5.67!HLX;;chr11:19263160..19263176,-!p1@E2F8!0.75!5.51!E2F8;;chr1:40105347..40105358,-!p2@HEYL!0.75!4.67!HEYL;;chr2:60780607..60780624,-!p2@BCL11A!0.74!14.85!BCL11A;;chr1:41204530..41204541,+!p8@NFYC!0.74!5.51!NFYC;;chr16:88497018..88497035,+!p@chr16:88497018..88497035,+!0.74!4.50!ZNF469;;chr2:200322259..200322280,-!p5@SATB2!0.74!4.50!SATB2;;chr8:145669791..145669834,-!p1@TONSL!0.73!13.68!TONSL;;chr9:3525727..3525828,-!p2@RFX3!0.73!12.18!RFX3;;chr18:22932004..22932021,-!p2@ZNF521!0.73!4.34!ZNF521;;chr19:21950332..21950356,-!p2@ZNF100!0.72!9.68!ZNF100;;chr6:45390002..45390023,+!p6@RUNX2!0.72!7.84!RUNX2;;chr19:20011731..20011743,+!p3@ZNF93!0.72!5.67!ZNF93;;chr1:221052733..221052749,+!p2@HLX!0.72!5.67!HLX;;chr1:40105299..40105326,-!p1@HEYL!0.71!4.17!HEYL;;chr3:18480173..18480189,-!p6@SATB1!0.71!4.17!SATB1;;chr3:18487057..18487105,-!p4@SATB1!0.71!4.17!SATB1;;chr19:23433144..23433204,-!p1@ZNF724P!0.70!20.19!ZNF724P;;chr1:25256756..25256774,-!p1@RUNX3!0.70!8.18!RUNX3;;chr15:76629123..76629151,+!p1@ISL2!0.70!4.50!ISL2;;chr11:32457103..32457123,-!p3@WT1!0.70!4.00!WT1;;chr5:88120151..88120177,-!p6@MEF2C!0.70!4.00!MEF2C;;chr7:114054864..114054876,+!p11@FOXP2!0.70!4.00!FOXP2;;chr14:75745523..75745537,+!p1@FOS!0.69!537.42!FOS;;chr19:20011775..20011800,+!p2@ZNF93!0.69!7.51!ZNF93;;chrX:66763815..66763854,+!p2@AR!0.69!5.34!AR;;chr19:48774586..48774670,+!p1@ZNF114!0.69!5.01!ZNF114;;chr1:247267618..247267674,-!p1@ZNF669!0.68!34.20!ZNF669;;chr1:227751231..227751273,+!p1@ZNF678!0.68!27.70!ZNF678;;chr9:137217986..137218049,+!p3@RXRA!0.68!12.18!RXRA;;chr6:45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| |expression_enrichment_score=chr16:85932760..85932775,+!p1@IRF8!2.52!330.36!IRF8;;chr11:47400078..47400106,-!p1@SPI1!2.28!191.71!SPI1;;chr6:135502501..135502546,+!p1@MYB!2.04!130.64!MYB;;chr2:68592406..68592424,+!p1@PLEK!1.99!96.94!PLEK;;chr9:96717629..96717644,-!p1@BARX1!1.86!70.91!BARX1;;chr12:54778471..54778528,-!p1@ZNF385A!1.86!70.74!ZNF385A;;chr7:115670804..115670825,-!p1@TFEC!1.76!56.56!TFEC;;chr6:135502408..135502459,+!p2@MYB!1.72!58.73!MYB;;chr2:63277948..63277974,+!p1@OTX1!1.71!49.72!OTX1;;chr19:33793430..33793447,-!p1@CEBPA!1.69!194.38!CEBPA;;chr3:18486354..18486377,-!p2@SATB1!1.69!58.90!SATB1;;chr1:92951607..92951661,-!p1@GFI1!1.59!38.04!GFI1;;chr13:72441315..72441454,-!p1@DACH1!1.58!71.91!DACH1;;chr1:92949331..92949377,-!p2@GFI1!1.57!36.37!GFI1;;chr2:200322654..200322707,-!p2@SATB2!1.53!47.72!SATB2;;chr10:31288398..31288455,-!p2@ZNF438!1.50!35.87!ZNF438;;chr1:156460436..156460462,-!p7@MEF2D!1.50!30.87!MEF2D;;chr1:41157421..41157482,+!p2@NFYC!1.43!285.98!NFYC;;chr7:50344289..50344323,+!p1@IKZF1!1.43!26.03!IKZF1;;chr1:41157363..41157416,+!p1@NFYC!1.42!460.17!NFYC;;chr7:137620650..137620677,-!p3@CREB3L2!1.42!25.19!CREB3L2;;chr2:175199675..175199688,+!p1@SP9!1.41!24.86!SP9;;chr11:47400062..47400077,-!p2@SPI1!1.41!24.53!SPI1;;chr6:135516877..135516900,+!p5@MYB!1.39!23.36!MYB;;chr5:72744594..72744609,-!p1@FOXD1!1.37!99.11!FOXD1;;chr5:88178983..88179012,-!p1@MEF2C!1.35!160.34!MEF2C;;chr6:85473156..85473210,-!p2@TBX18!1.34!25.53!TBX18;;chr1:40997285..40997352,+!p1@ZNF684!1.33!70.58!ZNF684;;chr1:40942922..40942997,+!p1@ZNF642!1.33!52.39!ZNF642;;chr1:40997363..40997392,+!p2@ZNF684!1.32!25.69!ZNF684;;chr7:27205136..27205164,-!p1@HOXA9!1.32!19.86!HOXA9;;chr7:137620684..137620711,-!p4@CREB3L2!1.32!19.69!CREB3L2;;chr6:34204973..34204990,+!p4@HMGA1!1.29!236.76!HMGA1;;chr7:113726357..113726443,+!p1@FOXP2!1.29!31.87!FOXP2;;chr2:145277640..145277771,-!p1@ZEB2!1.28!235.59!ZEB2;;chr6:135502472..135502489,+!p3@MYB!1.28!18.02!MYB;;chr2:63277978..63277995,+!p2@OTX1!1.27!17.69!OTX1;;chr1:156470515..156470542,-!p2@MEF2D!1.26!87.93!MEF2D;;chr1:3569072..3569093,+!p1@TP73!1.26!17.35!TP73;;chr1:50889103..50889145,-!p1@DMRTA2!1.26!17.02!DMRTA2;;chr18:55102598..55102623,+!p1@ONECUT2!1.25!16.68!ONECUT2;;chr1:247171316..247171336,-!p3@ZNF695!1.24!24.19!ZNF695;;chr7:27205106..27205134,-!p2@HOXA9!1.24!16.52!HOXA9;;chr7:27213893..27213954,-!p1@HOXA10!1.24!16.52!HOXA10;;chr7:27224795..27224840,-!p2@HOXA11!1.24!16.35!HOXA11;;chr7:27224842..27224872,-!p1@HOXA11!1.23!16.02!HOXA11;;chr11:47399996..47400014,-!p4@SPI1!1.22!15.52!SPI1;;chr18:22932080..22932170,-!p1@ZNF521!1.21!63.40!ZNF521;;chr14:75988771..75988826,+!p1@BATF!1.21!20.36!BATF;;chr6:135516909..135516925,+!p6@MYB!1.21!15.18!MYB;;chr16:54319010..54319041,-!p8@IRX3!1.19!14.52!IRX3;;chr3:18480217..18480239,-!p3@SATB1!1.19!14.35!SATB1;;chr7:50343634..50343717,+!p2@IKZF1!1.18!14.02!IKZF1;;chr3:157824001..157824078,-!p2@SHOX2!1.17!13.85!SHOX2;;chr1:247242048..247242098,-!p1@ZNF670,p1@ZNF695!1.16!48.39!ZNF670;;chr7:128577972..128578047,+!p1@IRF5!1.16!21.36!IRF5;;chr18:22805268..22805280,-!p8@ZNF521!1.16!13.35!ZNF521;;chr1:92952473..92952489,-!p3@GFI1!1.15!13.01!GFI1;;chr3:157824202..157824211,-!p3@SHOX2!1.15!13.01!SHOX2;;chr2:68592394..68592405,+!p2@PLEK!1.14!12.68!PLEK;;chr1:156460473..156460486,-!p12@MEF2D!1.14!12.68!MEF2D;;chr10:31288370..31288393,-!p3@ZNF438!1.13!12.51!ZNF438;;chr13:41593425..41593480,-!p1@ELF1!1.11!75.75!ELF1;;chr20:42295745..42295765,+!p1@MYBL2!1.10!187.37!MYBL2;;chr11:47399947..47399961,-!p3@SPI1!1.09!11.35!SPI1;;chr16:54320646..54320672,-!p2@IRX3!1.07!16.52!IRX3;;chr18:55102628..55102646,+!p2@ONECUT2!1.06!10.51!ONECUT2;;chrY:21906594..21906622,-!p1@KDM5D!1.06!10.51!KDM5D;;chr17:41277372..41277418,-!p1@BRCA1!1.05!37.21!BRCA1;;chr2:175199697..175199706,+!p2@SP9!1.05!10.34!SP9;;chr20:42295713..42295738,+!p2@MYBL2!1.04!59.06!MYBL2;;chr1:167298300..167298319,+!p2@POU2F1!1.04!10.01!POU2F1;;chr2:200322229..200322251,-!p3@SATB2!1.04!9.84!SATB2;;chr17:79881332..79881348,-!p3@MAFG!1.03!14.18!MAFG;;chr16:54320617..54320643,-!p3@IRX3!1.03!12.68!IRX3;;chr17:48072574..48072597,-!p1@DLX3!1.02!9.51!DLX3;;chr7:50344251..50344288,+!p3@IKZF1!1.01!9.18!IKZF1;;chr2:100759037..100759058,-!p2@AFF3!1.00!9.01!AFF3;;chr13:72441074..72441172,-!p2@DACH1!0.99!8.84!DACH1;;chr1:167298384..167298412,+!p3@POU2F1!0.99!8.68!POU2F1;;chr1:40627038..40627071,+!p1@RLF!0.98!113.96!RLF;;chr15:57511609..57511651,+!p2@TCF12!0.98!14.52!TCF12;;chr11:128563948..128564003,+!p1@FLI1!0.97!103.78!FLI1;;chr19:13213662..13213686,-!p1@LYL1!0.96!12.18!LYL1;;chr1:156470494..156470505,-!p3@MEF2D!0.96!12.01!MEF2D;;chr11:47400032..47400043,-!p5@SPI1!0.96!8.18!SPI1;;chr16:54320158..54320200,-!p5@IRX3!0.95!11.68!IRX3;;chr10:135044190..135044229,+!p3@UTF1!0.95!8.01!UTF1;;chr7:27239703..27239715,-!p1@HOXA13!0.95!8.01!HOXA13;;chr9:1050331..1050363,+!p1@DMRT2!0.95!8.01!DMRT2;;chr1:92949505..92949543,-!p5@GFI1!0.95!7.84!GFI1;;chr16:54320675..54320715,-!p1@IRX3!0.93!16.85!IRX3;;chr2:185463247..185463263,+!p1@ZNF804A!0.93!13.51!ZNF804A;;chr3:18467290..18467311,-!p8@SATB1!0.93!7.51!SATB1;;chr16:54320280..54320291,-!p9@IRX3!0.93!7.51!IRX3;;chr1:41157266..41157314,+!p3@NFYC!0.92!64.90!NFYC;;chr7:64838786..64838809,+!p2@ZNF92!0.92!43.21!ZNF92;;chr12:54694758..54694805,-!p1@NFE2!0.92!8.84!NFE2;;chr19:13213954..13214021,-!p4@LYL1!0.92!7.34!LYL1;;chr2:145277882..145277967,-!p3@ZEB2!0.90!12.35!ZEB2;;chr20:21378152..21378169,-!p1@NKX2-4!0.90!7.01!NKX2-4;;chr1:247171347..247171366,-!p2@ZNF695!0.89!12.68!ZNF695;;chrX:66763856..66763896,+!p1@AR!0.89!10.01!AR;;chr19:23299814..23299844,+!p1@ZNF730!0.89!8.34!ZNF730;;chr2:200320768..200320800,-!p4@SATB2!0.89!6.67!SATB2;;chr19:20011744..20011770,+!p1@ZNF93!0.88!26.70!ZNF93;;chr19:22605097..22605121,-!p2@ZNF98!0.88!6.51!ZNF98;;chr19:50922187..50922204,+!p1@SPIB!0.88!6.51!SPIB;;chr21:34442439..34442455,+!p1@OLIG1!0.88!6.51!OLIG1;;chr19:22817119..22817145,+!p1@ZNF492!0.87!11.01!ZNF492;;chr2:145275947..145275981,-!p10@ZEB2!0.87!6.34!ZEB2;;chr7:19157248..19157268,-!p1@TWIST1!0.86!18.19!TWIST1;;chr6:45390300..45390335,+!p4@RUNX2!0.86!10.01!RUNX2;;chr16:54320101..54320125,-!p4@IRX3!0.86!9.18!IRX3;;chr16:54320322..54320343,-!p7@IRX3!0.85!6.01!IRX3;;chr2:100759010..100759035,-!p1@AFF3!0.85!6.01!AFF3;;chr21:36421535..36421610,-!p2@RUNX1!0.84!22.52!RUNX1;;chr6:45390269..45390298,+!p5@RUNX2!0.84!10.18!RUNX2;;chr7:35293685..35293718,-!p1@TBX20!0.84!5.84!TBX20;;chrY:2803415..2803468,+!p1@ZFY!0.84!5.84!ZFY;;chr19:22605136..22605154,-!p1@ZNF98!0.84!5.84!ZNF98;;chr12:54694807..54694832,-!p3@NFE2!0.84!5.84!NFE2;;chr13:100623375..100623425,-!p1@ZIC5!0.84!5.84!ZIC5;;chr5:88179017..88179046,-!p2@MEF2C!0.83!24.86!MEF2C;;chr6:144385698..144385742,-!p2@PLAGL1!0.83!7.17!PLAGL1;;chr7:64363638..64363667,+!p1@ZNF273!0.82!30.20!ZNF273;;chr1:47779762..47779827,-!p1@STIL,p1@TAL1!0.82!27.53!TAL1;;chr3:157823517..157823562,-!p1@SHOX2!0.82!6.01!SHOX2;;chr1:167298425..167298440,+!p8@POU2F1!0.82!5.67!POU2F1;;chr5:71803177..71803255,-!p1@ZNF366!0.82!5.67!ZNF366;;chr7:113726226..113726245,+!p3@FOXP2!0.82!5.67!FOXP2;;chr7:27239740..27239759,-!p2@HOXA13!0.82!5.67!HOXA13;;chr11:44331576..44331650,-!p1@ALX4!0.82!5.67!ALX4;;chr11:47400045..47400060,-!p6@SPI1!0.82!5.67!SPI1;;chr13:100634031..100634045,+!p1@ZIC2!0.82!5.67!ZIC2;;chr1:156460402..156460417,-!p22@MEF2D!0.81!5.51!MEF2D;;chr3:71630980..71631110,-!p3@FOXP1!0.80!19.86!FOXP1;;chr19:13213704..13213726,-!p3@LYL1!0.80!7.17!LYL1;;chr1:41157641..41157665,+!p7@NFYC!0.80!7.01!NFYC;;chr18:22804637..22804660,-!p10@ZNF521!0.80!5.34!ZNF521;;chr5:122424918..122424944,+!p1@PRDM6!0.80!5.34!PRDM6;;chr2:200325204..200325243,-!p7@SATB2!0.80!5.34!SATB2;;chr2:200322711..200322722,-!p10@SATB2!0.79!5.17!SATB2;;chr13:41593392..41593403,-!p7@ELF1!0.79!5.17!ELF1;;chr7:114054885..114054910,+!p4@FOXP2!0.79!5.17!FOXP2;;chr9:126774018..126774055,+!p1@LHX2!0.78!5.01!LHX2;;chr1:43148059..43148108,+!p1@YBX1!0.77!342.87!YBX1;;chr1:45805872..45805900,+!p2@TOE1!0.77!12.68!TOE1;;chr1:40367530..40367597,-!p1@MYCL1!0.77!9.34!MYCL1;;chr10:22292591..22292606,-!p2@DNAJC1!0.77!8.34!DNAJC1;;chrY:21906761..21906810,-!p2@KDM5D!0.77!4.84!KDM5D;;chr18:22931979..22931992,-!p3@ZNF521!0.77!4.84!ZNF521;;chr19:3574330..3574393,+!p2@HMG20B!0.77!4.84!HMG20B;;chr2:145275982..145276003,-!p7@ZEB2!0.77!4.84!ZEB2;;chr6:135513595..135513617,+!p4@MYB!0.77!4.84!MYB;;chr19:45971246..45971265,+!p1@FOSB!0.76!97.61!FOSB;;chr1:41157671..41157695,+!p6@NFYC!0.76!7.01!NFYC;;chr1:221052994..221053008,+!p6@HLX!0.76!5.67!HLX;;chr11:19263160..19263176,-!p1@E2F8!0.75!5.51!E2F8;;chr1:40105347..40105358,-!p2@HEYL!0.75!4.67!HEYL;;chr2:60780607..60780624,-!p2@BCL11A!0.74!14.85!BCL11A;;chr1:41204530..41204541,+!p8@NFYC!0.74!5.51!NFYC;;chr16:88497018..88497035,+!p@chr16:88497018..88497035,+!0.74!4.50!ZNF469;;chr2:200322259..200322280,-!p5@SATB2!0.74!4.50!SATB2;;chr8:145669791..145669834,-!p1@TONSL!0.73!13.68!TONSL;;chr9:3525727..3525828,-!p2@RFX3!0.73!12.18!RFX3;;chr18:22932004..22932021,-!p2@ZNF521!0.73!4.34!ZNF521;;chr19:21950332..21950356,-!p2@ZNF100!0.72!9.68!ZNF100;;chr6:45390002..45390023,+!p6@RUNX2!0.72!7.84!RUNX2;;chr19:20011731..20011743,+!p3@ZNF93!0.72!5.67!ZNF93;;chr1:221052733..221052749,+!p2@HLX!0.72!5.67!HLX;;chr1:40105299..40105326,-!p1@HEYL!0.71!4.17!HEYL;;chr3:18480173..18480189,-!p6@SATB1!0.71!4.17!SATB1;;chr3:18487057..18487105,-!p4@SATB1!0.71!4.17!SATB1;;chr19:23433144..23433204,-!p1@ZNF724P!0.70!20.19!ZNF724P;;chr1:25256756..25256774,-!p1@RUNX3!0.70!8.18!RUNX3;;chr15:76629123..76629151,+!p1@ISL2!0.70!4.50!ISL2;;chr11:32457103..32457123,-!p3@WT1!0.70!4.00!WT1;;chr5:88120151..88120177,-!p6@MEF2C!0.70!4.00!MEF2C;;chr7:114054864..114054876,+!p11@FOXP2!0.70!4.00!FOXP2;;chr14:75745523..75745537,+!p1@FOS!0.69!537.42!FOS;;chr19:20011775..20011800,+!p2@ZNF93!0.69!7.51!ZNF93;;chrX:66763815..66763854,+!p2@AR!0.69!5.34!AR;;chr19:48774586..48774670,+!p1@ZNF114!0.69!5.01!ZNF114;;chr1:247267618..247267674,-!p1@ZNF669!0.68!34.20!ZNF669;;chr1:227751231..227751273,+!p1@ZNF678!0.68!27.70!ZNF678;;chr9:137217986..137218049,+!p3@RXRA!0.68!12.18!RXRA;;chr6:45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SRP1!0.21!69.41!SSRP1;;chr19:1863568..1863586,-!p1@KLF16!0.21!48.22!KLF16;;chr3:169491171..169491205,+!p1@MYNN!0.21!24.86!MYNN;;chr10:111967345..111967422,+!p1@MXI1!0.21!23.36!MXI1;;chr16:67226019..67226127,+!p1@E2F4!0.21!18.69!E2F4;;chr1:161015706..161015747,-!p1@USF1!0.21!16.85!USF1;;chr12:57916466..57916523,+!p2@MBD6!0.21!12.51!MBD6;;chr8:10697329..10697365,-!p2@PINX1,p2@SOX7!0.21!9.01!SOX7;;chr1:150849174..150849200,-!p2@ARNT!0.21!8.84!ARNT;;chr12:46123464..46123512,+!p1@ARID2!0.21!7.68!ARID2;;chr6:43139041..43139094,+!p3@SRF!0.21!7.51!SRF;;chr6:35227282..35227330,+!p2@ZNF76!0.21!4.67!ZNF76;;chr5:43121607..43121649,+!p4@ZNF131!0.21!3.34!ZNF131;;chr7:55955139..55955190,+!p1@ZNF713,p2@MRPS17!0.21!3.00!ZNF713;;chr10:44101902..44101932,+!p2@ZNF485!0.21!2.17!ZNF485;;chr11:130184311..130184362,-!p4@ZBTB44!0.21!1.84!ZBTB44;;chr5:43067583..43067606,+!p7@ZNF131!0.21!1.33!ZNF131;;chr15:42783258..42783270,-!p4@ZFP106!0.21!1.17!ZFP106;;chr14:58765305..58765324,+!p4@ARID4A!0.21!1.00!ARID4A;;chr11:47279248..47279264,+!p3@NR1H3!0.21!0.83!NR1H3;;chr12:27485733..27485742,+!p5@ARNTL2!0.21!0.83!ARNTL2;;chr17:17726892..17726903,-!p6@SREBF1!0.21!0.83!SREBF1;;chr3:170076223..170076242,+!p6@SKIL!0.21!0.83!SKIL;;chr1:35658736..35658754,-!p1@SFPQ!0.20!523.57!SFPQ;;chr10:60145155..60145206,+!p1@TFAM!0.20!61.73!TFAM;;chr19:33864600..33864732,+!p1@CEBPG!0.20!39.38!CEBPG;;chr6:56954919..56955000,+!p1@ZNF451!0.20!28.36!ZNF451;;chr1:27022164..27022220,+!p2@ARID1A!0.20!9.84!ARID1A;;chr6:35227480..35227546,+!p1@ZNF76!0.20!8.68!ZNF76;;chr19:58361185..58361235,+!p2@ZNF587!0.20!7.01!ZNF587;;chr19:9434841..9434886,+!p1@ZNF559!0.20!6.51!ZNF559;;chr16:67063211..67063240,+!p2@CBFB!0.20!6.17!CBFB;;chr17:42297028..42297056,-!p3@UBTF!0.20!5.01!UBTF;;chr14:89883412..89883478,-!p3@FOXN3!0.20!3.84!FOXN3;;chr9:2017063..2017144,+!p4@SMARCA2!0.20!3.67!SMARCA2;;chr19:37958318..37958365,-!p2@ZNF569!0.20!3.00!ZNF569;;chr12:48298765..48298783,-!p2@VDR!0.20!2.17!VDR;;chr8:124286670..124286702,-!p3@ZHX1!0.20!1.67!ZHX1;;chr6:45390442..45390479,+!p8@RUNX2!0.20!1.33!RUNX2;;chr16:67596356..67596367,+!p5@CTCF!0.20!1.17!CTCF;;chr19:53324884..53324886,-!p1@ZNF28!0.20!1.17!ZNF28;;chr6:42419290..42419314,-!p5@TRERF1!0.20!1.00!TRERF1;;chr8:116681247..116681261,-!p8@TRPS1!0.20!1.00!TRPS1;;chr10:105110720..105110744,-!p3@PCGF6!0.20!1.00!PCGF6;;chr16:29817199..29817222,+!p17@MAZ!0.20!1.00!MAZ;;chr2:176033066..176033087,-!p2@ATF2!0.20!1.00!ATF2;;chr2:219524193..219524205,-!p3@ZNF142!0.20!0.83!ZNF142;;chr6:20402070..20402082,+!p5@E2F3!0.20!0.83!E2F3;;chr19:58193388..58193411,+!p2@ZNF551,p4@ZNF776!0.20!0.83!ZNF551;;chr17:41623259..41623278,-!p7@ETV4!0.20!0.83!ETV4;;chr18:53255839..53255854,-!p13@TCF4!0.20!0.83!TCF4;;chr2:187350973..187351072,+!p1@ZC3H15!0.19!120.63!ZC3H15;;chr2:74374995..74375055,-!p1@BOLA3!0.19!61.90!BOLA3;;chr19:11071685..11071798,+!p1@SMARCA4!0.19!39.21!SMARCA4;;chr14:103058948..103059005,+!p1@RCOR1!0.19!37.87!RCOR1;;chr2:208394658..208394692,+!p1@CREB1!0.19!33.04!CREB1;;chr2:174828545..174828644,-!p1@SP3!0.19!20.86!SP3;;chr1:67390665..67390698,+!p1@MIER1!0.19!18.85!MIER1;;chr6:155635583..155635644,-!p1@TFB1M!0.19!17.69!TFB1M;;chr6:7107939..7107993,+!p1@RREB1!0.19!16.02!RREB1;;chr20:61493117..61493187,-!p1@TCFL5!0.19!15.35!TCFL5;;chr14:65569244..65569264,-!p2@MAX!0.19!15.35!MAX;;chr8:146052918..146052975,+!p1@ZNF7!0.19!14.85!ZNF7;;chr10:105110831..105110885,-!p1@PCGF6!0.19!13.01!PCGF6;;chr19:53141584..53141625,-!p2@ZNF83!0.19!10.51!ZNF83;;chr9:104161123..104161205,+!p1@ZNF189!0.19!9.18!ZNF189;; | ||
|ffid_belonging_in_development=CL:0000049,CL:0000134 | |||
|fonse_cell_line=FF:0101035 | |fonse_cell_line=FF:0101035 | ||
|fonse_cell_line_closure=FF:0101035 | |fonse_cell_line_closure=FF:0101035 | ||
| Line 35: | Line 41: | ||
|fonse_treatment_closure= | |fonse_treatment_closure= | ||
|has_quality= | |has_quality= | ||
|hg19bam=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.cell_line.hCAGE/acute%2520myeloid%2520leukemia%2520%2528FAB%2520M5%2529%2520cell%2520line%253aTHP-1%2520%2528thawed%2529.CNhs10724.10405-106A9.hg19.nobarcode.bam | |||
|hg19ctss=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.cell_line.hCAGE/acute%2520myeloid%2520leukemia%2520%2528FAB%2520M5%2529%2520cell%2520line%253aTHP-1%2520%2528thawed%2529.CNhs10724.10405-106A9.hg19.ctss.bed.gz | |||
|hg19fasta=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.cell_line.hCAGE/acute%2520myeloid%2520leukemia%2520%2528FAB%2520M5%2529%2520cell%2520line%253aTHP-1%2520%2528thawed%2529.CNhs10724.10405-106A9.hg19.nobarcode.rdna.fa.gz | |||
|hg38bam=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.cell_line.hCAGE/acute%2520myeloid%2520leukemia%2520%2528FAB%2520M5%2529%2520cell%2520line%253aTHP-1%2520%2528thawed%2529.CNhs10724.10405-106A9.hg38.nobarcode.bam | |||
|hg38ctss=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.cell_line.hCAGE/acute%2520myeloid%2520leukemia%2520%2528FAB%2520M5%2529%2520cell%2520line%253aTHP-1%2520%2528thawed%2529.CNhs10724.10405-106A9.hg38.nobarcode.ctss.bed.gz | |||
|id=FF:10405-106A9 | |id=FF:10405-106A9 | ||
|is_a=EFO:0002091;;FF:0000210;;FF:0101370;;FF:0101883 | |is_a=EFO:0002091;;FF:0000210;;FF:0101370;;FF:0101883 | ||
|is_obsolete= | |is_obsolete= | ||
|library_id=CNhs10724 | |||
|library_id_phase_based=2:CNhs10724 | |||
|microRNAs= | |||
|microRNAs_nn= | |||
|microRNAs_nonnovel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer/#/human#cage;sample;10405 | |||
|microRNAs_novel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer_novel/#/human#cage;sample;10405 | |||
|name=acute myeloid leukemia (FAB M5) cell line:THP-1 (thawed) | |name=acute myeloid leukemia (FAB M5) cell line:THP-1 (thawed) | ||
|namespace=FANTOM5 | |namespace=FANTOM5 | ||
| Line 43: | Line 60: | ||
|profile_cagescan=,,, | |profile_cagescan=,,, | ||
|profile_hcage=CNhs10724,LSID691,release008,COMPLETED | |profile_hcage=CNhs10724,LSID691,release008,COMPLETED | ||
|profile_rnaseq= | |profile_rnaseq= | ||
|profile_srnaseq=,,, | |profile_srnaseq=,,, | ||
|refex=http://refex.dbcls.jp/genelist.php?lang | |||
|repeat_enrich_byfamily=0,0,0,0,0,0.176249725951653,0,-0.0352604378856286,0,-0.207818587111127,-0.282403560576942,0,0,0,0,0,0,0,0,0,0.398225207466139,0,0,0,-0.153323010348428,0,0,0,0,0,-0.0979578962680575,0,0,-0.132956589778862,0,0,0,0,0,0,0.34231184730165,0,0,0.0670147110949639,0,0,-0.123696508934093,0,0,0,0,0,0,0,0,-0.0242150211128343,0,0,0,0.544407545496101,0,-0.0362307149805919,0,-0.0969923612426051,0,0,-0.097343627213097,0,0,0,0,0,0,0,0,0,0,0.740751550523135,0,0,0.222038902954069,0,0,0,0,0.062528796100379,0,0,0,0,0,-0.220257835801845,0,0,0,0.20753448815538,-0.06056356553088,0,0,0,0,-0.0980353512377064,-0.138477200800895,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0542800651537443,0.176249725951653,0,0,-0.154522154904233,-0.361117049541575,0,0,0,0,0,0 | |||
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| |||
|rna_box=106 | |rna_box=106 | ||
|rna_catalog_number= | |rna_catalog_number= | ||
| Line 58: | Line 78: | ||
|rna_weight_ug=23.15984 | |rna_weight_ug=23.15984 | ||
|sample_age=1 | |sample_age=1 | ||
|sample_category=cell lines | |||
|sample_cell_catalog= | |sample_cell_catalog= | ||
|sample_cell_line=THP-1 | |sample_cell_line=THP-1 | ||
| Line 79: | Line 100: | ||
|top_motifs=MYB:2.63998255195;E2F1..5:1.80906952065;RFX2..5_RFXANK_RFXAP:1.67183807162;NANOG:1.57223595389;RXR{A,B,G}_{NR1H2,PPAR}dimers:1.52789902115;YY1:1.36654014483;NFY{A,B,C}:1.16071914605;RFX1:1.1299253532;PPARG:0.984219501914;NRF1:0.975943117023;DMAP1_NCOR{1,2}_SMARC:0.958658960557;ELK1,4_GABP{A,B1}:0.932791888862;NFIL3:0.896711437498;SPIB:0.887987536515;ELF1,2,4:0.875572859109;SPI1:0.852990434427;FOXA2:0.826095341395;POU5F1:0.702028783683;FOXP3:0.66568524008;PAX8:0.651517848546;NR5A1,2:0.62299320722;CUX2:0.613541862045;ZNF143:0.61279868658;BREu{core}:0.610799142601;AIRE:0.584513825808;NR6A1:0.559347125777;TEF:0.554888304548;STAT1,3:0.528137690202;ETS1,2:0.517404492597;NANOG{mouse}:0.507465360957;ARID5B:0.478556378942;POU2F1..3:0.46930038715;POU1F1:0.466853356703;CDX1,2,4:0.434410616262;EN1,2:0.424024297138;HOX{A6,A7,B6,B7}:0.392526986411;NKX3-2:0.360210893261;RUNX1..3:0.347986368718;NKX2-2,8:0.330938191408;PAX5:0.329146980682;CEBPA,B_DDIT3:0.32428077773;GATA6:0.30834896768;CRX:0.306421151221;PRRX1,2:0.271138266083;HBP1_HMGB_SSRP1_UBTF:0.263500434076;OCT4_SOX2{dimer}:0.261578656529;EP300:0.244588369965;MYOD1:0.236503544566;GCM1,2:0.219847915132;CREB1:0.211856550383;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:0.206175740226;HLF:0.169807268864;TFDP1:0.166899788817;GFI1:0.153909345566;bHLH_family:0.139826068423;ALX1:0.12134787299;HOX{A4,D4}:0.0601356343346;STAT5{A,B}:0.0586949230915;HOX{A5,B5}:0.0421151750894;HNF4A_NR2F1,2:0.0376955925269;DBP:0.0268031563888;NKX2-3_NKX2-5:0.0217641587194;FOXN1:0.0216441935106;AR:0.0163614635033;HES1:-0.000952374326074;FOXQ1:-0.0153460639999;MTF1:-0.0285894803716;NFE2L1:-0.0288863725854;SOX{8,9,10}:-0.0298771503831;ZNF238:-0.04365685459;IRF1,2:-0.0437942221507;RORA:-0.0447459736189;HNF1A:-0.0607573576838;PRDM1:-0.0614638913297;NFE2L2:-0.0703851533252;SOX17:-0.0786702691378;HIF1A:-0.0935956465229;MYBL2:-0.12540387011;RXRA_VDR{dimer}:-0.127606108368;TGIF1:-0.135778861938;IRF7:-0.147424383613;MEF2{A,B,C,D}:-0.149017389011;ESRRA:-0.157981332864;SRF:-0.161856988765;ATF5_CREB3:-0.164880076524;PBX1:-0.168454084957;PITX1..3:-0.177364616171;TAL1_TCF{3,4,12}:-0.181764974981;KLF4:-0.183470893841;SREBF1,2:-0.186266057486;SOX5:-0.190737459107;HSF1,2:-0.20329124708;PAX2:-0.210534361292;HAND1,2:-0.22190230822;ATF4:-0.224258834478;LEF1_TCF7_TCF7L1,2:-0.233636087754;POU6F1:-0.238918079673;IKZF2:-0.282561905024;FOSL2:-0.296032283198;AHR_ARNT_ARNT2:-0.297491873812;TLX2:-0.298812188281;REST:-0.301345437192;HOXA9_MEIS1:-0.310112046124;NFE2:-0.312451540129;NKX2-1,4:-0.341505933342;ZEB1:-0.346793295441;NFKB1_REL_RELA:-0.350485526277;PAX3,7:-0.355088342432;FOX{F1,F2,J1}:-0.355818575503;VSX1,2:-0.361235072812;NKX3-1:-0.37266930537;FOXP1:-0.391479383088;LMO2:-0.397888436368;XBP1:-0.418917048776;GATA4:-0.420797451609;ZFP161:-0.427036378677;FOXD3:-0.427400635548;TBX4,5:-0.433614304781;RBPJ:-0.435798952412;TOPORS:-0.438317369333;FOS_FOS{B,L1}_JUN{B,D}:-0.439664799942;ATF6:-0.440788534113;ZNF423:-0.451065104492;PDX1:-0.460550998409;PAX6:-0.460610462799;BACH2:-0.477987137834;IKZF1:-0.479823547299;NHLH1,2:-0.494893652047;TFAP2{A,C}:-0.496912248242;LHX3,4:-0.50940747353;FOX{I1,J2}:-0.511398349277;ATF2:-0.530168416802;POU3F1..4:-0.537314529429;TBP:-0.566517122559;MZF1:-0.579991626981;MTE{core}:-0.603037551811;T:-0.609340477878;ESR1:-0.611587900106;TFAP4:-0.611703655889;SNAI1..3:-0.61388494593;PAX4:-0.61511856862;MYFfamily:-0.650786073675;NR1H4:-0.656367978402;ZBTB16:-0.66821221206;NFIX:-0.683419857544;XCPE1{core}:-0.694111017386;RXR{A,B,G}:-0.706344616332;EVI1:-0.707444248024;HMGA1,2:-0.715439980851;MED-1{core}:-0.724824259463;ZNF148:-0.735263956639;MAFB:-0.766176421988;ADNP_IRX_SIX_ZHX:-0.771142907443;GZF1:-0.774836177217;TP53:-0.795334176304;ZNF384:-0.811626853372;FOXM1:-0.843889657838;UFEwm:-0.850649806717;NKX6-1,2:-0.877042988781;HIC1:-0.878765695993;ONECUT1,2:-0.885451396866;ZBTB6:-0.899416815761;PAX1,9:-0.906045550175;GTF2I:-0.915801502779;SPZ1:-0.928697160853;ZIC1..3:-0.958717975306;SOX2:-0.98548510449;STAT2,4,6:-1.00513352076;EGR1..3:-1.01623741481;JUN:-1.02034996198;TLX1..3_NFIC{dimer}:-1.0409378791;TFAP2B:-1.04133508346;TEAD1:-1.04174909318;SP1:-1.06955115389;GTF2A1,2:-1.07898736072;EBF1:-1.08143229755;NR3C1:-1.11565234374;TFCP2:-1.14474183492;HMX1:-1.14796450301;FOXO1,3,4:-1.14949981829;RREB1:-1.15866160343;MAZ:-1.18334155616;GFI1B:-1.24228199739;CDC5L:-1.24520010554;BPTF:-1.25378323696;FOX{D1,D2}:-1.25585976484;FOXL1:-1.26974303879;ALX4:-1.30833233115;GLI1..3:-1.32753243891;NFATC1..3:-1.32772848788;PATZ1:-1.32889904217;SMAD1..7,9:-1.52331595128 | |top_motifs=MYB:2.63998255195;E2F1..5:1.80906952065;RFX2..5_RFXANK_RFXAP:1.67183807162;NANOG:1.57223595389;RXR{A,B,G}_{NR1H2,PPAR}dimers:1.52789902115;YY1:1.36654014483;NFY{A,B,C}:1.16071914605;RFX1:1.1299253532;PPARG:0.984219501914;NRF1:0.975943117023;DMAP1_NCOR{1,2}_SMARC:0.958658960557;ELK1,4_GABP{A,B1}:0.932791888862;NFIL3:0.896711437498;SPIB:0.887987536515;ELF1,2,4:0.875572859109;SPI1:0.852990434427;FOXA2:0.826095341395;POU5F1:0.702028783683;FOXP3:0.66568524008;PAX8:0.651517848546;NR5A1,2:0.62299320722;CUX2:0.613541862045;ZNF143:0.61279868658;BREu{core}:0.610799142601;AIRE:0.584513825808;NR6A1:0.559347125777;TEF:0.554888304548;STAT1,3:0.528137690202;ETS1,2:0.517404492597;NANOG{mouse}:0.507465360957;ARID5B:0.478556378942;POU2F1..3:0.46930038715;POU1F1:0.466853356703;CDX1,2,4:0.434410616262;EN1,2:0.424024297138;HOX{A6,A7,B6,B7}:0.392526986411;NKX3-2:0.360210893261;RUNX1..3:0.347986368718;NKX2-2,8:0.330938191408;PAX5:0.329146980682;CEBPA,B_DDIT3:0.32428077773;GATA6:0.30834896768;CRX:0.306421151221;PRRX1,2:0.271138266083;HBP1_HMGB_SSRP1_UBTF:0.263500434076;OCT4_SOX2{dimer}:0.261578656529;EP300:0.244588369965;MYOD1:0.236503544566;GCM1,2:0.219847915132;CREB1:0.211856550383;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:0.206175740226;HLF:0.169807268864;TFDP1:0.166899788817;GFI1:0.153909345566;bHLH_family:0.139826068423;ALX1:0.12134787299;HOX{A4,D4}:0.0601356343346;STAT5{A,B}:0.0586949230915;HOX{A5,B5}:0.0421151750894;HNF4A_NR2F1,2:0.0376955925269;DBP:0.0268031563888;NKX2-3_NKX2-5:0.0217641587194;FOXN1:0.0216441935106;AR:0.0163614635033;HES1:-0.000952374326074;FOXQ1:-0.0153460639999;MTF1:-0.0285894803716;NFE2L1:-0.0288863725854;SOX{8,9,10}:-0.0298771503831;ZNF238:-0.04365685459;IRF1,2:-0.0437942221507;RORA:-0.0447459736189;HNF1A:-0.0607573576838;PRDM1:-0.0614638913297;NFE2L2:-0.0703851533252;SOX17:-0.0786702691378;HIF1A:-0.0935956465229;MYBL2:-0.12540387011;RXRA_VDR{dimer}:-0.127606108368;TGIF1:-0.135778861938;IRF7:-0.147424383613;MEF2{A,B,C,D}:-0.149017389011;ESRRA:-0.157981332864;SRF:-0.161856988765;ATF5_CREB3:-0.164880076524;PBX1:-0.168454084957;PITX1..3:-0.177364616171;TAL1_TCF{3,4,12}:-0.181764974981;KLF4:-0.183470893841;SREBF1,2:-0.186266057486;SOX5:-0.190737459107;HSF1,2:-0.20329124708;PAX2:-0.210534361292;HAND1,2:-0.22190230822;ATF4:-0.224258834478;LEF1_TCF7_TCF7L1,2:-0.233636087754;POU6F1:-0.238918079673;IKZF2:-0.282561905024;FOSL2:-0.296032283198;AHR_ARNT_ARNT2:-0.297491873812;TLX2:-0.298812188281;REST:-0.301345437192;HOXA9_MEIS1:-0.310112046124;NFE2:-0.312451540129;NKX2-1,4:-0.341505933342;ZEB1:-0.346793295441;NFKB1_REL_RELA:-0.350485526277;PAX3,7:-0.355088342432;FOX{F1,F2,J1}:-0.355818575503;VSX1,2:-0.361235072812;NKX3-1:-0.37266930537;FOXP1:-0.391479383088;LMO2:-0.397888436368;XBP1:-0.418917048776;GATA4:-0.420797451609;ZFP161:-0.427036378677;FOXD3:-0.427400635548;TBX4,5:-0.433614304781;RBPJ:-0.435798952412;TOPORS:-0.438317369333;FOS_FOS{B,L1}_JUN{B,D}:-0.439664799942;ATF6:-0.440788534113;ZNF423:-0.451065104492;PDX1:-0.460550998409;PAX6:-0.460610462799;BACH2:-0.477987137834;IKZF1:-0.479823547299;NHLH1,2:-0.494893652047;TFAP2{A,C}:-0.496912248242;LHX3,4:-0.50940747353;FOX{I1,J2}:-0.511398349277;ATF2:-0.530168416802;POU3F1..4:-0.537314529429;TBP:-0.566517122559;MZF1:-0.579991626981;MTE{core}:-0.603037551811;T:-0.609340477878;ESR1:-0.611587900106;TFAP4:-0.611703655889;SNAI1..3:-0.61388494593;PAX4:-0.61511856862;MYFfamily:-0.650786073675;NR1H4:-0.656367978402;ZBTB16:-0.66821221206;NFIX:-0.683419857544;XCPE1{core}:-0.694111017386;RXR{A,B,G}:-0.706344616332;EVI1:-0.707444248024;HMGA1,2:-0.715439980851;MED-1{core}:-0.724824259463;ZNF148:-0.735263956639;MAFB:-0.766176421988;ADNP_IRX_SIX_ZHX:-0.771142907443;GZF1:-0.774836177217;TP53:-0.795334176304;ZNF384:-0.811626853372;FOXM1:-0.843889657838;UFEwm:-0.850649806717;NKX6-1,2:-0.877042988781;HIC1:-0.878765695993;ONECUT1,2:-0.885451396866;ZBTB6:-0.899416815761;PAX1,9:-0.906045550175;GTF2I:-0.915801502779;SPZ1:-0.928697160853;ZIC1..3:-0.958717975306;SOX2:-0.98548510449;STAT2,4,6:-1.00513352076;EGR1..3:-1.01623741481;JUN:-1.02034996198;TLX1..3_NFIC{dimer}:-1.0409378791;TFAP2B:-1.04133508346;TEAD1:-1.04174909318;SP1:-1.06955115389;GTF2A1,2:-1.07898736072;EBF1:-1.08143229755;NR3C1:-1.11565234374;TFCP2:-1.14474183492;HMX1:-1.14796450301;FOXO1,3,4:-1.14949981829;RREB1:-1.15866160343;MAZ:-1.18334155616;GFI1B:-1.24228199739;CDC5L:-1.24520010554;BPTF:-1.25378323696;FOX{D1,D2}:-1.25585976484;FOXL1:-1.26974303879;ALX4:-1.30833233115;GLI1..3:-1.32753243891;NFATC1..3:-1.32772848788;PATZ1:-1.32889904217;SMAD1..7,9:-1.52331595128 | ||
|xref= | |xref= | ||
|zenbu_report=https://fantom.gsc.riken.jp/zenbu/reports/#miRNA_expression_atlas_human;search_select_hide=table111:FF:10405-106A9;search_select_hide=table117:FF:10405-106A9 | |||
}} | }} | ||
Latest revision as of 13:59, 3 June 2020
| Name: | acute myeloid leukemia (FAB M5) cell line:THP-1 (thawed) |
|---|---|
| Species: | Human (Homo sapiens) |
| Library ID: | CNhs10724 |
| Sample type: | cell lines |
| Genomic View: | UCSC |
| RefEX: | Specific genes |
| CAGEd-oPOSSUM: | link |
| ZENBU report : | link |
| Additional information | ||||||||||||||||||||||||||||
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Sample information
RNA information
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| CAGE Accession numbers | ||||||||||||||||||||||||||||||||||||||||||||||
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| Download raw sequence, BAM & CTSS | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
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Relative expression to median (log10)
Transcription factors with enriched expression in this sampleRanked list of transcription factor promoter expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.
Co-expression clusters with enriched expression in this sampleRanked list of co-expression cluster expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed. <br>Analyst:NA <br><br>link to dataset.<br>data
Repeat families with enriched expression in this sample<b>Summary:</b>Ranked list of repeat family expression in this sample relative tothe median expression in the FANTOM5 collection is shown. Value is log10transformed.<br><b>Analyst:</b>NA<br><br>link to dataset.<br>data
TFBS(DNA)motifs over-represented in proximal region of promoters active in this sample
JASPAR motifs<b>Summary:</b>Association of JASPAR motif to the promoter expression in thissample. Pearson's correlation between the number of TFBSs estimated byusing the position-weight matrix for each promoter and its expression isexpressed as Z-score by taking the ones based on random position-weightmatrix, and the tail probability of the normal distribution correspondingto the Z-score is taken as the resulting P-value. Lower P-value indicatesmore (non-random) association of the motif to promoter expression<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data
library id: CNhs10724
FANTOM5 phase1 novel unique motifs<b>Summary:</b>Association of the 169 novel and unique motifs discovered in FANTOM5 phase1 in this sample. Among the de-novo motifs discovered by DMF, HOMER,ChIPMunk, and ScanAll, only novel motifs are selected after comparison with known motif sets, and their clustering based on MACRO-APE resulted in169 novel and unique motifs. Their association to the promoter expression is evaluated in the same way to the JASPAR motif above<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data
library id: CNhs10724
| Novel motif | Logo | P-value |
|---|---|---|
| 1 | 1 | 0.129 |
| 10 | 10 | 0.0336 |
| 100 | 100 | 0.177 |
| 101 | 101 | 0.292 |
| 102 | 102 | 0.982 |
| 103 | 103 | 0.357 |
| 104 | 104 | 0.655 |
| 105 | 105 | 0.808 |
| 106 | 106 | 0.0423 |
| 107 | 107 | 0.0337 |
| 108 | 108 | 0.216 |
| 109 | 109 | 0.0313 |
| 11 | 11 | 0.271 |
| 110 | 110 | 0.375 |
| 111 | 111 | 0.635 |
| 112 | 112 | 0.746 |
| 113 | 113 | 0.164 |
| 114 | 114 | 0.496 |
| 115 | 115 | 0.757 |
| 116 | 116 | 0.865 |
| 117 | 117 | 0.0546 |
| 118 | 118 | 0.128 |
| 119 | 119 | 0.141 |
| 12 | 12 | 0.695 |
| 120 | 120 | 0.502 |
| 121 | 121 | 0.667 |
| 122 | 122 | 0.161 |
| 123 | 123 | 0.241 |
| 124 | 124 | 0.277 |
| 125 | 125 | 0.624 |
| 126 | 126 | 0.583 |
| 127 | 127 | 0.0698 |
| 128 | 128 | 0.0644 |
| 129 | 129 | 0.826 |
| 13 | 13 | 0.00159 |
| 130 | 130 | 0.489 |
| 131 | 131 | 0.00307 |
| 132 | 132 | 0.655 |
| 133 | 133 | 0.332 |
| 134 | 134 | 0.466 |
| 135 | 135 | 0.0594 |
| 136 | 136 | 0.101 |
| 137 | 137 | 0.182 |
| 138 | 138 | 0.89 |
| 139 | 139 | 0.697 |
| 14 | 14 | 0.835 |
| 140 | 140 | 0.0774 |
| 141 | 141 | 0.973 |
| 142 | 142 | 0.584 |
| 143 | 143 | 0.15 |
| 144 | 144 | 0.611 |
| 145 | 145 | 0.427 |
| 146 | 146 | 0.82 |
| 147 | 147 | 0.0568 |
| 148 | 148 | 0.0174 |
| 149 | 149 | 0.0845 |
| 15 | 15 | 0.467 |
| 150 | 150 | 0.594 |
| 151 | 151 | 0.446 |
| 152 | 152 | 0.0509 |
| 153 | 153 | 0.47 |
| 154 | 154 | 0.64 |
| 155 | 155 | 0.0689 |
| 156 | 156 | 0.968 |
| 157 | 157 | 0.449 |
| 158 | 158 | 0.479 |
| 159 | 159 | 0.385 |
| 16 | 16 | 0.577 |
| 160 | 160 | 0.792 |
| 161 | 161 | 0.134 |
| 162 | 162 | 0.351 |
| 163 | 163 | 0.518 |
| 164 | 164 | 0.502 |
| 165 | 165 | 0.0138 |
| 166 | 166 | 0.256 |
| 167 | 167 | 0.389 |
| 168 | 168 | 0.873 |
| 169 | 169 | 0.712 |
| 17 | 17 | 0.391 |
| 18 | 18 | 0.514 |
| 19 | 19 | 0.986 |
| 2 | 2 | 0.112 |
| 20 | 20 | 0.375 |
| 21 | 21 | 0.597 |
| 22 | 22 | 0.866 |
| 23 | 23 | 0.00478 |
| 24 | 24 | 0.0573 |
| 25 | 25 | 0.238 |
| 26 | 26 | 0.941 |
| 27 | 27 | 0.849 |
| 28 | 28 | 0.928 |
| 29 | 29 | 0.0217 |
| 3 | 3 | 0.0625 |
| 30 | 30 | 0.108 |
| 31 | 31 | 0.252 |
| 32 | 32 | 0.0377 |
| 33 | 33 | 0.279 |
| 34 | 34 | 0.406 |
| 35 | 35 | 0.699 |
| 36 | 36 | 0.0463 |
| 37 | 37 | 0.477 |
| 38 | 38 | 0.527 |
| 39 | 39 | 0.123 |
| 4 | 4 | 0.344 |
| 40 | 40 | 0.376 |
| 41 | 41 | 0.745 |
| 42 | 42 | 0.116 |
| 43 | 43 | 0.996 |
| 44 | 44 | 0.821 |
| 45 | 45 | 0.256 |
| 46 | 46 | 0.404 |
| 47 | 47 | 0.0821 |
| 48 | 48 | 0.146 |
| 49 | 49 | 0.973 |
| 5 | 5 | 0.845 |
| 50 | 50 | 0.955 |
| 51 | 51 | 0.88 |
| 52 | 52 | 0.118 |
| 53 | 53 | 0.906 |
| 54 | 54 | 0.418 |
| 55 | 55 | 0.396 |
| 56 | 56 | 0.586 |
| 57 | 57 | 0.497 |
| 58 | 58 | 0.303 |
| 59 | 59 | 0.982 |
| 6 | 6 | 0.248 |
| 60 | 60 | 0.431 |
| 61 | 61 | 0.121 |
| 62 | 62 | 0.498 |
| 63 | 63 | 0.616 |
| 64 | 64 | 0.503 |
| 65 | 65 | 0.411 |
| 66 | 66 | 0.0145 |
| 67 | 67 | 0.856 |
| 68 | 68 | 0.322 |
| 69 | 69 | 0.738 |
| 7 | 7 | 0.111 |
| 70 | 70 | 0.0781 |
| 71 | 71 | 0.153 |
| 72 | 72 | 0.995 |
| 73 | 73 | 0.846 |
| 74 | 74 | 0.93 |
| 75 | 75 | 0.0436 |
| 76 | 76 | 0.337 |
| 77 | 77 | 0.245 |
| 78 | 78 | 0.609 |
| 79 | 79 | 0.198 |
| 8 | 8 | 0.394 |
| 80 | 80 | 0.439 |
| 81 | 81 | 0.65 |
| 82 | 82 | 0.517 |
| 83 | 83 | 0.501 |
| 84 | 84 | 0.538 |
| 85 | 85 | 0.0337 |
| 86 | 86 | 0.763 |
| 87 | 87 | 0.0322 |
| 88 | 88 | 0.406 |
| 89 | 89 | 0.325 |
| 9 | 9 | 0.557 |
| 90 | 90 | 0.0814 |
| 91 | 91 | 0.222 |
| 92 | 92 | 0.0339 |
| 93 | 93 | 0.802 |
| 94 | 94 | 0.95 |
| 95 | 95 | 0.0042 |
| 96 | 96 | 0.758 |
| 97 | 97 | 0.67 |
| 98 | 98 | 0.758 |
| 99 | 99 | 0.146 |
de novo motifs identified by HOMER in promoters active in this sample<b>Summary:</b>The result of HOMER in this sample is shown.<br><b>Analyst:</b>NA <br>
library id: CNhs10724
FANTOM5 (FF) ontology
Direct parent terms
is_a relathionship
EFO:0002091 biological replicate
FF:0000210 human sample
FF:0101370 THP-1 cell sample
FF:0101883 acute myeloid leukemia cell line sample
Ancestor terms (non development)<b>Summary:</b>Connected ontology terms with is_a, part_of or located_in relationship <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source data<br>data
CL: Cell type
0000000 (cell), 0000000 (cell)
0000003 (native cell)
0000988 (hematopoietic cell)
0000548 (animal cell)
0000763 (myeloid cell)
0002371 (somatic cell)
0000766 (myeloid leukocyte)
0000219 (motile cell)
0000738 (leukocyte)
0002087 (nongranular leukocyte)
0000255 (eukaryotic cell)
0000576 (monocyte)
DOID: Disease
4 (disease)
0050686 (organ system cancer)
162 (cancer)
2531 (hematologic cancer)
14566 (disease of cellular proliferation)
0060083 (immune system cancer)
1240 (leukemia)
8692 (myeloid leukemia)
FF: FANTOM5
0000102 (sample by type)
0000003 (cell line sample)
0000210 (human sample)
0000101 (sample by species)
0000001 (sample)
0100737 (leukemia cell line sample)
0101370 (THP-1 cell sample)
0101035 (hematopoietic cell line sample)
0101883 (acute myeloid leukemia cell line sample)
0102332 (monocytic leukemia cell line sample)
0100740 (myeloid leukemia cell line sample)
Ancestor terms (development)<b>Summary:</b>Connected ontology terms with develops_from, derives_from or preceded_by relationship <br><b>Analyst:</b> Hideya Kawaji <br><br>link to source data<br>data
CL:0000049 (common myeloid progenitor)
CL:0000134 (mesenchymal cell)
