FF:10604-108F1: Difference between revisions

Latest revision as of 14:30, 3 June 2020

Name:	embryonic pancreas cell line:1B2C6
Species:	Human (Homo sapiens)
Library ID:	CNhs11731
Sample type:	cell lines
Genomic View:	UCSC
RefEX:	Specific genes
CAGEd-oPOSSUM:	link
ZENBU report :	link

Additional information

Sample information

strain	NA
tissue	pancreas
dev stage	NA
sex	unknown
age	19 week embryo
cell type	unclassifiable
cell line	1B2C6
company	RIKEN Bioresource centre
collaboration	Yukio Nakamura (RIKEN BRC)
External link for information	[{{{sample_info_link}}} {{{sample_info_link}}}]

RNA information

lot number	NA
catalog number	NA
sample type	total RNA
extraction protocol (Details)	OP-RNA-extraction-totalRNA-miRNeasy_Mini-v1.0

CAGE Accession numbers

Method		Sample accession id
CAGE		SAMD00005594

Library accession numbers

Library id		Method		Exp. accession id		Run accession id
CNhs11731		CAGE		DRX007872		DRR008744

Accession ID Hg19

Library id		BAM		CTSS
CNhs11731		DRZ000169		DRZ001554

Accession ID Hg38

Library id		BAM		CTSS
CNhs11731		DRZ011519		DRZ012904

Download raw sequence, BAM & CTSS

Hg19

Fasta	BAM	CTSS
download	download	donwload

Hg38

BAM	CTSS
download	donwload

Relative expression to median (log10)

Transcription factors with enriched expression in this sampleRanked list of transcription factor promoter expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.

Co-expression clusters with enriched expression in this sampleRanked list of co-expression cluster expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed. Analyst:NA link to dataset. data

Coexpression cluster	score
C0-CD14-Eosinophils-Neutrophils-Basophils-CD34-immature-Peripheral	0
C1-testis-epididymis-embryonic-medulla-pituitary-trachea-caudate	0
C10-occipital-temporal-parietal-brain-duodenum-Neurons-Neural	0
C100-rhabdomyosarcoma-gastric-pineal-Wilms-cervical-mesodermal-endometrial	0
C101-small-cerebellum-maxillary-colon-parietal-epididymis-merkel	0
C102-neuroblastoma-testicular-pituitary-carcinosarcoma-rectum-acantholytic-iPS	0
C103-CD4-CD8-Natural-Peripheral-Whole-Neutrophils-Basophils	0
C104-Mast-Basophils-immature-CD14-CD34-eye-Natural	0
C105-heart-skeletal-occipital-hippocampus-acute-Sebocyte-penis	-1.242954e-4
C106-Hep2-epitheloid-placenta-cervical-rectal-anaplastic-glassy	0
C107-Neutrophils-CD14-Eosinophils-Monocytederived-Whole-Peripheral-blood	0
C108-breast-hepatoblastoma-MCF7-parotid-salivary-submaxillary-prostate	0
C109-Reticulocytes-non-acute-Hodgkin-Burkitt-retinoblastoma-lymphoma	0.243
C11-cerebellum-medulla-pons-parietal-occipital-middle-medial	0
C110-leukemia-chronic-Eosinophils-acute-Whole-CD34-Lymphatic	0
C111-medulla-lung-trachea-testis-caudate-epididymis-throat	0
C112-gastric-pancreas-temporal-duodenum-small-extraskeletal-adrenal	0
C113-thyroid-throat-lung-lymph-small-colon-trachea	0
C114-teratocarcinoma-medulloblastoma-carcinosarcoma-iPS-anaplastic-acute-neuroblastoma	0
C115-pituitary-Neural-caudate-putamen-amygdala-medulla-hippocampus	0
C116-myeloma-xeroderma-tonsil-CD19-spleen-lymph-trachea	0
C117-serous-clear-kidney-neuroectodermal-mesothelioma-endometrial-Intestinal	0
C118-cerebellum-parietal-occipital-medial-middle-frontal-insula	0
C119-CD4-CD8-Natural-Neutrophils-CD14-Peripheral-CD19	0
C12-Mast-Basophils-immature-chorionic-mature-CD14-Eosinophils	0
C120-immature-salivary-tongue-skin-cervical-CD14-CD34	0
C121-NK-Natural-CD8-CD4-anaplastic-chronic-B	0
C122-chronic-Reticulocytes-skeletal-leukemia-acute-colon-Tracheal	0
C123-CD19-Natural-CD8-CD4-CD14-Peripheral-Basophils	0
C124-small-temporal-duodenum-colon-gall-signet-Hepatocyte	0
C125-mucinous-alveolar-mesothelioma-Smooth-lung-CD14-Nucleus	0
C126-gastrointestinal-argyrophil-smallcell-merkel-bile-insula-brain	0
C127-maxillary-small-hepatoblastoma-hepatocellular-alveolar-colon-argyrophil	0
C128-testicular-choriocarcinoma-H9-teratocarcinoma-pancreatic-iPS-HES3GFP	0
C129-liver-Hepatocyte-colon-duodenum-temporal-testicular-small	0
C13-Neutrophils-Eosinophils-CD14-Monocytederived-Whole-Peripheral-CD4	0
C130-iPS-HES3GFP-H9-teratocarcinoma-testicular-colon-Alveolar	0
C131-lung-trachea-Alveolar-thyroid-umbilical-throat-skin	0
C132-acute-small-Dendritic-Macrophage-CD14-Neutrophils-Monocytederived	0
C133-signet-gall-small-kidney-colon-ductal-adenocarcinoma	0
C134-skeletal-diaphragm-tongue-throat-Skeletal-skin-penis	0
C135-neuroblastoma-retinoblastoma-carcinoid-choriocarcinoma-testicular-acute-rectum	0
C136-Wilms-extraskeletal-anaplastic-rhabdomyosarcoma-cholangiocellular-nonsmall-neuroectodermal	0
C137-large-ductal-melanoma-cervical-Endothelial-Smooth-chronic	0
C138-diffuse-Burkitt-lymphangiectasia-lymphoma-acute-CD19-pineal	0
C139-astrocytoma-skin-salivary-gall-serous-Mallassezderived-renal	0
C14-Whole-blood-Reticulocytes-liver-Neutrophils-Eosinophils-spleen	0
C140-Renal-Endothelial-Hepatic-Lymphatic-heart-lung-spleen	0
C141-Hodgkin-acute-thymus-chronic-vein-CD4-B	0
C142-Preadipocyte-Fibroblast-hepatic-Ewing-Adipocyte-Olfactory-Hair	0
C143-Monocytederived-CD14-Macrophage-Dendritic-Basophils-CD14CD16-Osteoblast	0
C144-CD4-tonsil-NK-appendix-CD8-splenic-mycosis	0
C145-neuroblastoma-peripheral-neuroectodermal-neuroepithelioma-carcinoid-adult-extraskeletal	0
C146-lymphangiectasia-lymphoma-gall-lymph-tonsil-gastric-transitionalcell	0
C147-Neutrophils-Eosinophils-CD4-CD14-CD8-Natural-Peripheral	0
C148-kidney-small-epididymis-pancreas-serous-duodenum-temporal	0
C149-occipital-medial-brain-amygdala-parietal-cerebral-cerebellum	0
C15-anaplastic-small-skeletal-neuroblastoma-parietal-temporal-tongue	0
C150-merkel-carcinoid-nonsmall-gastrointestinal-argyrophil-pineal-small	0
C151-CD14-Natural-Basophils-CD8-Eosinophils-CD4-Mast	0
C152-peripheral-neuroectodermal-neuroepithelioma-neuroblastoma-testicular-carcinoid-lung	0
C153-rhabdomyosarcoma-liposarcoma-pancreatic-somatostatinoma-Reticulocytes-lymphoma-testicular	0
C154-adenocarcinoma-Mesenchymal-Cardiac-small-sacrococcigeal-Smooth-Prostate	0
C155-pituitary-placenta-nonsmall-cervical-smallcell-choriocarcinoma-epitheloid	0
C156-plasma-splenic-hereditary-B-large-xeroderma-b	0
C157-testicular-H9-testis-iPS-teratocarcinoma-colon-trachea	0
C158-adrenal-gastric-temporal-parietal-duodenum-caudate-putamen	0
C159-choriocarcinoma-pancreatic-placenta-chorionic-testicular-bronchioalveolar-seminal	0
C16-medial-amygdala-occipital-parietal-olfactory-putamen-brain	0
C160-medulla-Hepatocyte-retina-corpus-liver-pineal-cerebral	0
C161-mesothelioma-Mesothelial-acute-mesenchymal-extraskeletal-renal-placenta	0
C162-spinal-locus-medulla-substantia-thalamus-globus-diencephalon	0
C163-Skeletal-skeletal-Pericytes-Hepatic-rhabdomyosarcoma-throat-mesenchymal	0
C164-signet-corpus-optic-mucinous-substantia-salivary-choriocarcinoma	0
C165-epithelioid-Adipocyte-mesothelioma-myxofibrosarcoma-lung-gastric-Mesothelial	0
C166-Macrophage-Monocytederived-Dendritic-adipose-lymph-CD14-lung	0
C167-Basophils-Mast-Eosinophils-Neutrophils-Peripheral-Whole-CD4	0
C168-Mast-CD14-immature-Basophils-Eosinophils-CD34-Peripheral	0
C169-hereditary-adult-gall-lymphangiectasia-chronic-b-choriocarcinoma	0
C17-Mast-CD14-Monocytederived-Lymphatic-Smooth-mesenchymal-Macrophage	0
C170-epitheloid-cervical-Hep2-keratoacanthoma-adult-neuroblastoma-signet	0
C171-merkel-neuroblastoma-pineal-retinoblastoma-carcinoid-small-eye	0
C172-chorionic-skeletal-tongue-amniotic-liver-gastrointestinal-Pericytes	0
C173-Adipocyte-mature-skin-left-Hepatocyte-Osteoblast-adipose	0
C174-CD14-Neutrophils-Smooth-mesothelioma-embryonic-Monocytederived-Eosinophils	0
C175-Eosinophils-Neutrophils-CD4-Basophils-CD19-CD8-Natural	0
C176-Eosinophils-Neutrophils-Mast-CD14-CD4-Basophils-CD19	0.0311
C177-melanoma-Melanocyte-mesenchymal-retina-Mallassezderived-Gingival-squamous	0
C178-spleen-liver-Hepatocyte-b-lymph-vein-thymus	0
C179-CD19-Peripheral-lymphoma-blood-lymph-spleen-tonsil	0
C18-CD4-CD8-thymus-Whole-Peripheral-Natural-blood	0
C180-skeletal-heart-Hepatocyte-acute-occipital-hippocampus-middle	0.00573
C181-liposarcoma-somatostatinoma-neuroblastoma-mesothelioma-nonsmall-small-Alveolar	0
C182-renal-mature-mesothelioma-lung-Mammary-Adipocyte-acute	0
C183-acute-non-CD34-diffuse-CD133-myeloma-Burkitt	0
C184-somatostatinoma-smallcell-nonsmall-small-gastrointestinal-pineal-thyroid	0
C185-small-adrenal-gastric-Mesenchymal-acute-HES3GFP-testis	0
C186-squamous-papillotubular-large-Tracheal-oral-Small-epidermoid	0
C187-migratory-immature-Dendritic-CD19-CD14-Monocytederived-Macrophage	0
C188-left-heart-tongue-skeletal-Skeletal-diaphragm-throat	0
C189-b-splenic-tonsil-CD19-lymph-appendix-spleen	0
C19-embryonic-testis-cord-chronic-CD14-NK-mesothelioma	0
C190-colon-small-rectum-duodenum-appendix-temporal-oral	0
C191-leiomyoblastoma-Mast-parietal-acute-bone-neuroepithelioma-embryonic	0
C192-Neutrophils-CD14-Peripheral-Eosinophils-CD8-Natural-CD4	0
C193-Mesenchymal-Adipocyte-mature-Cardiac-heart-CD14CD16-CD14	0
C194-MCF7-breast-prostate-Intestinal-diffuse-Wilms-Alveolar	0
C195-Small-Gingival-Bronchial-Smooth-mesenchymal-Urothelial-Tracheal	0
C196-testicular-iPS-H9-teratocarcinoma-HES3GFP-choriocarcinoma-endometrial	0
C197-tongue-esophagus-tonsil-salivary-cervix-nasal-Gingival	0
C198-Mesenchymal-Hair-Hepatic-Fibroblast-Smooth-tenocyte-Pericytes	0
C199-glioblastoma-B-osteosarcoma-Fibroblast-heart-rhabdomyosarcoma-myxofibrosarcoma	0
C2-Eosinophils-Neutrophils-CD14-Whole-Basophils-Peripheral-Mast	0
C20-heart-left-skeletal-diaphragm-tongue-umbilical-throat	0
C200-seminal-Cardiac-Smooth-Hair-submaxillary-Neutrophils-mixed	0.0716
C201-colon-small-adenocarcinoma-duodenum-temporal-signet-gall	0
C202-salivary-skin-penis-tongue-uterus-cervical-immature	0
C203-acute-NK-chronic-CD133-lymphoma-immature-Dendritic	0
C204-Smooth-nasal-CD4-CD19-CD8-CD14-CD34	0
C205-mycosis-cord-hairy-xeroderma-CD4-B-b	0
C206-melanoma-somatostatinoma-nonsmall-small-neuroblastoma-smallcell-pituitary	0
C207-Corneal-Keratinocyte-Esophageal-Mammary-Bronchial-Urothelial-Sebocyte	0
C208-skin-amniotic-papillotubular-salivary-umbilical-Alveolar-serous	0
C209-acute-myelodysplastic-CD34-granulocyte-CD133-liver-spleen	0
C21-cord-mycosis-hairy-xeroderma-adult-CD4-anaplastic	0
C210-Burkitt-lymphoma-appendix-acute-diffuse-CD19-tonsil	0
C211-small-Hepatocyte-liver-colon-temporal-duodenum-kidney	0
C212-chronic-acute-Whole-Reticulocytes-leukemia-blood-CD34	0
C213-CD14-Natural-CD8-CD4-Basophils-Eosinophils-Peripheral	0
C214-Neurons-Neural-duodenum-temporal-occipital-parietal-brain	0
C215-chronic-acute-peripheral-Hepatocyte-osteosarcoma-NK-immature	0
C216-osteosarcoma-Smooth-Mesenchymal-large-neuroectodermal-acute-CD34	0
C217-carcinoid-neuroectodermal-mature-mesodermal-colon-acute-occipital	0
C218-tonsil-lymph-CD19-spleen-colon-appendix-salivary	0
C219-nasal-Basophils-amniotic-Melanocyte-CD14-Osteoblast-duodenum	0
C22-CD4-CD8-Natural-Basophils-CD14-Peripheral-CD19	0
C220-Adipocyte-mature-left-breast-skin-liver-adipose	0
C221-alveolar-Osteoblast-Myoblast-mesenchymal-liposarcoma-Smooth-hepatocellular	0
C222-Melanocyte-Tracheal-Neutrophils-seminal-Smooth-Hair-Chondrocyte	0.0716
C223-Chondrocyte-basal-renal-Fibroblast-Smooth-spindle-Synoviocyte	0
C224-clear-serous-pleomorphic-choriocarcinoma-mesothelioma-amniotic-renal	0
C225-ductal-alveolar-giant-prostate-salivary-squamous-Tracheal	0
C226-Corneal-Keratinocyte-Esophageal-Urothelial-Mammary-Bronchial-Tracheal	0
C227-chorionic-amniotic-Mesenchymal-Placental-gastric-diaphragm-tongue	0
C228-colon-Intestinal-Prostate-hepatoblastoma-hepatocellular-testis-adult	0
C229-Mesenchymal-CD4-Melanocyte-acute-skeletal-left-heart	0
C23-CD4-CD8-Natural-Peripheral-Basophils-CD19-CD14	0
C230-aorta-normal-heart-penis-osteosarcoma-basal-lung	0
C231-Mesothelial-mesenchymal-mesothelioma-Fibroblast-Preadipocyte-leiomyoma-mycosis	0
C232-teratocarcinoma-HES3GFP-H9-iPS-testicular-neuroblastoma-cerebellum	0
C233-uterus-cervix-ovary-epididymis-colon-rectum-MCF7	0
C234-oral-epidermoid-malignant-cervical-ductal-lung-keratoacanthoma	0
C235-Intestinal-Prostate-liver-colon-small-kidney-pancreas	0
C236-CD14-Neutrophils-Monocytederived-renal-Eosinophils-testis-mesothelioma	0
C237-acute-breast-testicular-hepatoblastoma-chronic-argyrophil-Bronchial	0
C238-stomach-gall-breast-duodenum-temporal-MCF7-smallcell	0
C239-CD4-lymphangiectasia-CD8-NK-mycosis-Renal-hairy	0
C24-pineal-eye-retina-retinoblastoma-medulloblastoma-small-cerebral	0
C240-Adipocyte-Preadipocyte-Osteoblast-Chondrocyte-tenocyte-Synoviocyte-mesenchymal	0
C241-Reticulocytes-chronic-Tracheal-Hodgkin-Endothelial-Hair-thymus	-0.024
C242-acute-Chondrocyte-myelodysplastic-granulocyte-biphenotypic-Fibroblast-stomach	0
C243-Chondrocyte-trachea-Synoviocyte-mesodermal-renal-Fibroblast-Ewing	0
C244-CD14-Monocytederived-Hepatocyte-heart-Neutrophils-acute-Macrophage	0
C245-prostate-penis-salivary-esophagus-kidney-Neutrophils-Pancreatic	0
C246-Neutrophils-Eosinophils-Whole-CD14-CD14CD16-Basophils-migratory	0
C247-pons-locus-medulla-spinal-paracentral-medial-occipital	0
C248-iPS-Aortic-Hep2-amygdala-acute-medial-Myoblast	0
C249-nonsmall-small-smallcell-occipital-somatostatinoma-maxillary-medial	0
C25-small-colon-temporal-duodenum-liver-Hepatocyte-gall	0
C250-Mast-Neutrophils-CD14-Eosinophils-CD8-Peripheral-CD4	0
C251-gall-tonsil-trachea-CD14-salivary-throat-tongue	0
C252-hepatic-Olfactory-sacrococcigeal-leiomyoma-normal-Synoviocyte-glioblastoma	0
C253-spleen-rhabdomyosarcoma-Hepatocyte-small-uterus-liver-rectum	0
C254-prostate-rhabdomyosarcoma-seminal-Fibroblast-transitionalcell-Smooth-Iris	0
C255-Wilms-leiomyoblastoma-kidney-adrenal-MCF7-epithelioid-Mast	0
C256-occipital-caudate-amygdala-medial-thalamus-hippocampus-medulla	0
C257-pineal-insula-frontal-occipital-temporal-medial-paracentral	0
C258-hepatoblastoma-hepatocellular-signet-colon-Intestinal-Prostate-gastric	0
C259-Preadipocyte-Adipocyte-Fibroblast-Chondrocyte-tenocyte-normal-Ewing	0
C26-Eosinophils-Neutrophils-CD14-CD14CD16-Basophils-Monocytederived-Whole	0
C260-acute-chronic-Natural-NK-Basophils-biphenotypic-blood	0
C261-locus-medial-parietal-pons-diencephalon-olfactory-spinal	0
C262-breast-MCF7-skeletal-Reticulocytes-mucinous-hepatoblastoma-Wilms	0
C263-cervical-keratoacanthoma-tongue-skin-esophagus-throat-tonsil	0
C264-giant-keratoacanthoma-colon-fibrosarcoma-HES3GFP-Hep2-acute	0
C265-CD4-Eosinophils-CD14-Natural-CD19-Basophils-CD8	0
C266-acute-chronic-leukemia-small-choriocarcinoma-hepatoma-Mast	0
C267-pancreatic-placenta-choriocarcinoma-testicular-teratocarcinoma-chorionic-clear	0
C268-Mallassezderived-Urothelial-Gingival-Small-Bronchial-Tracheal-Prostate	0
C269-Basophils-Mast-Eosinophils-mature-CD14-chorionic-CD4	0
C27-pancreas-temporal-duodenum-salivary-ductus-umbilical-lung	0
C270-CD4-Fibroblast-acute-iPS-Aortic-CD34-Smooth	0
C271-pineal-spinal-locus-globus-medulla-thalamus-cerebellum	0
C272-CD19-CD4-CD8-Whole-Peripheral-lymph-tonsil	0
C273-Neutrophils-CD14-Eosinophils-Monocytederived-CD4-Natural-Mast	0
C274-CD14-Mast-immature-Basophils-mature-vagina-Hepatocyte	0
C275-pons-medulla-cerebellum-locus-thalamus-diencephalon-spinal	0
C276-mesothelioma-kidney-renal-small-clear-cerebellum-Renal	0
C277-mesothelioma-epithelioid-thyroid-extraskeletal-alveolar-glioblastoma-adenocarcinoma	0
C278-amygdala-hippocampus-insula-medial-putamen-temporal-olfactory	0
C279-parietal-cerebellum-occipital-temporal-middle-duodenum-medial	0
C28-thymus-acute-vein-Hodgkin-chronic-throat-Dendritic	0
C280-Mast-Natural-CD19-CD8-Eosinophils-CD34-CD4	0
C281-Hodgkin-Reticulocytes-chronic-NK-acute-retinoblastoma-small	0.271
C282-acute-B-tonsil-CD19-submaxillary-lymph-throat	0
C283-tenocyte-Chondrocyte-mesenchymal-Macrophage-pleomorphic-Synoviocyte-cholangiocellular	0
C284-parietal-occipital-medial-temporal-olfactory-locus-hippocampus	0
C285-cervical-Hep2-small-colon-temporal-duodenum-bronchogenic	0
C286-cerebellum-occipital-optic-parietal-globus-caudate-medial	0
C287-Hepatocyte-Chondrocyte-Adipocyte-Synoviocyte-liver-tenocyte-mesenchymal	0
C288-Chondrocyte-Renal-Pericytes-Fibroblast-aorta-Smooth-Meningeal	0
C289-chorionic-skeletal-heart-Mast-amniotic-granulosa-left	0
C29-mature-adipose-Adipocyte-breast-Lymphatic-vein-heart	0
C290-Eosinophils-CD14-Basophils-Mast-CD4-CD8-immature	0
C291-spinal-substantia-retina-medulla-tongue-skeletal-trachea	0
C292-Mesenchymal-skin-umbilical-Adipocyte-mesenchymal-Chondrocyte-skeletal	0
C293-CD14-CD14CD16-Basophils-Peripheral-immature-Eosinophils-CD34	0
C294-CD14-Macrophage-Monocytederived-CD14CD16-Neutrophils-Basophils-Peripheral	0
C295-Fibroblast-Smooth-Myoblast-Chondrocyte-hepatic-Synoviocyte-Preadipocyte	0
C296-gall-small-mesothelioma-acute-bronchioalveolar-epidermoid-mixed	0
C297-Eosinophils-CD4-Basophils-Natural-Neutrophils-CD8-Peripheral	0
C298-small-optic-substantia-thalamus-diencephalon-globus-occipital	0
C299-CD14CD16-Eosinophils-Neutrophils-CD14-Whole-Basophils-blood	0
C3-occipital-temporal-insula-medial-postcentral-frontal-amygdala	0
C30-thyroid-throat-mesothelioma-mucinous-trachea-chorionic-mesenchymal	0
C300-CD4-CD8-NK-Natural-blood-mycosis-Basophils	0
C301-Smooth-mesenchymal-Endothelial-Hepatic-basal-hepatic-chorionic	0
C302-acute-peripheral-Neutrophils-NK-myelodysplastic-CD34-carcinoid	0
C303-CD14-Basophils-Peripheral-Eosinophils-CD14CD16-Neutrophils-Whole	0
C305-heart-skeletal-smooth-left-bladder-penis-esophagus	0
C31-skeletal-tongue-diaphragm-throat-penis-skin-trachea	0
C32-middle-occipital-parietal-hippocampus-amygdala-medial-olfactory	0
C33-Reticulocytes-liver-Whole-blood-chronic-acute-spleen	0
C34-placenta-chorionic-choriocarcinoma-mesothelioma-Wilms-Smooth-bile	0
C35-caudate-putamen-diencephalon-nucleus-globus-thalamus-insula	0
C36-B-b-splenic-plasma-xeroderma-adrenal-Burkitt	0
C37-salivary-submaxillary-parotid-seminal-tongue-ductus-trachea	0
C38-extraskeletal-rhabdomyosarcoma-adrenal-rectal-mesothelioma-lung-Wilms	0
C39-epididymis-ductus-seminal-testis-acute-thyroid-CD133	0
C4-optic-corpus-substantia-medulla-spinal-thalamus-globus	0
C40-eye-retina-Lens-pineal-tongue-retinoblastoma-small	0
C41-retina-eye-medulla-Retinal-medulloblastoma-kidney-pineal	0
C42-small-lung-maxillary-pharyngeal-Mesenchymal-Wilms-colon	0
C43-ductus-seminal-duodenum-temporal-gall-prostate-bladder	0
C44-Dendritic-CD19-CD133-granulocyte-acute-thymus-immature	0
C45-testicular-choriocarcinoma-H9-teratocarcinoma-Wilms-pancreatic-iPS	0
C46-acute-Hodgkin-thymus-CD8-chronic-CD4-merkel	0
C47-CD19-Burkitt-acute-xeroderma-tonsil-lymphoma-appendix	0
C48-smooth-bladder-esophagus-colon-penis-aorta-uterus	0
C49-H9-iPS-testicular-HES3GFP-teratocarcinoma-hepatoblastoma-choriocarcinoma	0
C5-Hepatocyte-liver-hepatocellular-Intestinal-kidney-small-pancreas	0
C50-chorionic-placenta-amniotic-migratory-smallcell-chronic-choriocarcinoma	0
C51-kidney-mesothelioma-renal-signet-gall-lung-pancreas	0
C52-adult-NK-chronic-cord-testis-embryonic-myeloma	0
C53-medulloblastoma-pineal-retinoblastoma-small-retina-eye-pituitary	0
C54-Dendritic-Macrophage-Monocytederived-CD14-leiomyoma-adipose-immature	0
C55-hepatocellular-Intestinal-liver-Prostate-fibrosarcoma-Hepatocyte-hepatoblastoma	0
C56-heart-left-umbilical-skeletal-penis-diaphragm-tongue	0
C57-Neutrophils-Eosinophils-Whole-CD4-CD8-CD19-Natural	0
C58-Melanocyte-melanoma-retina-Retinal-eye-migratory-H9	0
C59-Smooth-Fibroblast-Mesenchymal-tenocyte-Ewing-skin-hepatic	0
C6-CD14-Eosinophils-Basophils-Peripheral-CD34-Natural-immature	0
C60-esophagus-tonsil-throat-tongue-uterus-cervix-cervical	0
C61-migratory-Dendritic-immature-Macrophage-xeroderma-cord-b	0
C62-Burkitt-tonsil-CD19-submaxillary-spleen-salivary-lymph	0
C63-neuroectodermal-neuroblastoma-carcinoid-peripheral-chronic-neuroepithelioma-acute	0
C64-Mast-chronic-acute-immature-chorionic-Basophils-Dendritic	0
C65-CD14-Eosinophils-Monocytederived-Basophils-immature-Macrophage-Neutrophils	0
C66-cerebellum-middle-occipital-parietal-medial-amygdala-hippocampus	0
C67-CD14-Monocytederived-Macrophage-dura-Dendritic-spleen-lung	0
C68-amniotic-chorionic-Placental-salivary-placenta-tongue-mesothelioma	0
C69-anaplastic-CD14-cord-hairy-mycosis-adult-NK	0
C7-CD14-Eosinophils-Neutrophils-Smooth-Basophils-Macrophage-Mast	0
C70-parotid-submaxillary-salivary-throat-trachea-aorta-tongue	0
C71-Monocytederived-Macrophage-CD14-Dendritic-Osteoblast-leiomyoma-Prostate	0
C72-skeletal-tongue-throat-heart-diaphragm-penis-left	0
C73-pineal-eye-retina-caudate-cerebellum-left-parietal	0
C74-splenic-B-b-plasma-xeroderma-lymphoma-hairy	0
C75-Eosinophils-Natural-CD8-Basophils-CD14-CD4-Peripheral	0
C76-argyrophil-gastrointestinal-temporal-duodenum-neuroblastoma-merkel-smallcell	0
C77-Saos2-osteosarcoma-Neutrophils-Natural-Chondrocyte-Basophils-CD8	0
C78-lymphoma-plasma-tonsil-appendix-lymph-seminal-trachea	0
C79-chorionic-Chondrocyte-Cardiac-Smooth-Fibroblast-Preadipocyte-Mesenchymal	0
C8-Natural-CD8-Basophils-CD4-CD14-Peripheral-CD34	0
C80-immature-migratory-CD14-Dendritic-splenic-cord-Mast	0
C81-trachea-salivary-throat-aorta-eye-submaxillary-parotid	0
C82-Basophils-CD14-Eosinophils-Natural-Peripheral-immature-CD34	0
C83-choriocarcinoma-pancreatic-placenta-chorionic-HES3GFP-testicular-amniotic	0
C84-choriocarcinoma-pancreatic-Wilms-Mallassezderived-thymus-salivary-colon	0
C85-neuroblastoma-carcinoid-retinoblastoma-small-pineal-rhabdomyosarcoma-medulloblastoma	0
C86-colon-carcinoid-small-neuroectodermal-giant-large-neuroepithelioma	0
C87-retinoblastoma-left-nonsmall-heart-small-diaphragm-bronchogenic	0
C88-Melanocyte-melanoma-Macrophage-Mesenchymal-migratory-Dendritic-Monocytederived	0
C89-small-retinoblastoma-medulloblastoma-iPS-acantholytic-eye-bronchogenic	0
C9-skeletal-diaphragm-tongue-throat-penis-heart-left	0
C90-neuroectodermal-peripheral-neuroepithelioma-neuroblastoma-carcinoid-parietal-putamen	0
C91-Fibroblast-Smooth-mesenchymal-Mesothelial-Small-Preadipocyte-Hair	0
C92-CD14CD16-CD14-Eosinophils-Basophils-Neutrophils-Macrophage-Whole	0
C93-chronic-acute-leukemia-acantholytic-medulloblastoma-testis-papillotubular	0
C94-smallcell-adrenal-lung-nonsmall-small-somatostatinoma-teratocarcinoma	0
C95-lung-aorta-trachea-penis-Alveolar-throat-endometrioid	0
C96-non-acute-tonsil-spleen-Burkitt-lymphoma-appendix	0
C97-small-smallcell-gastrointestinal-argyrophil-putamen-duodenum-brain	0
C98-CD8-Natural-Basophils-blood-CD4-Peripheral-Whole	0
C99-hairy-mycosis-submaxillary-salivary-cord-kidney-parotid	0

Repeat families with enriched expression in this sampleSummary:Ranked list of repeat family expression in this sample relative tothe median expression in the FANTOM5 collection is shown. Value is log10transformed. Analyst:NA link to dataset. data

TFBS(DNA)motifs over-represented in proximal region of promoters active in this sample

JASPAR motifsSummary:Association of JASPAR motif to the promoter expression in thissample. Pearson's correlation between the number of TFBSs estimated byusing the position-weight matrix for each promoter and its expression isexpressed as Z-score by taking the ones based on random position-weightmatrix, and the tail probability of the normal distribution correspondingto the Z-score is taken as the resulting P-value. Lower P-value indicatesmore (non-random) association of the motif to promoter expression Analyst: Michiel de Hoon link to dataset. data

library id: CNhs11731

Jaspar motif	Logo	P-value
MA0002.2	MA0002.2	0.72
MA0003.1	MA0003.1	0.992
MA0004.1	MA0004.1	0.00183
MA0006.1	MA0006.1	0.764
MA0007.1	MA0007.1	0.162
MA0009.1	MA0009.1	0.892
MA0014.1	MA0014.1	0.34
MA0017.1	MA0017.1	0.709
MA0018.2	MA0018.2	0.624
MA0019.1	MA0019.1	0.463
MA0024.1	MA0024.1	5.9582e-4
MA0025.1	MA0025.1	0.998
MA0027.1	MA0027.1	0.35
MA0028.1	MA0028.1	0.138
MA0029.1	MA0029.1	0.0424
MA0030.1	MA0030.1	0.0678
MA0031.1	MA0031.1	0.466
MA0035.2	MA0035.2	0.014
MA0038.1	MA0038.1	0.927
MA0039.2	MA0039.2	0.0225
MA0040.1	MA0040.1	0.735
MA0041.1	MA0041.1	0.463
MA0042.1	MA0042.1	0.342
MA0043.1	MA0043.1	0.412
MA0046.1	MA0046.1	0.049
MA0047.2	MA0047.2	0.021
MA0048.1	MA0048.1	0.351
MA0050.1	MA0050.1	0.00766
MA0051.1	MA0051.1	0.72
MA0052.1	MA0052.1	0.899
MA0055.1	MA0055.1	0.0473
MA0057.1	MA0057.1	0.945
MA0058.1	MA0058.1	0.041
MA0059.1	MA0059.1	0.251
MA0060.1	MA0060.1	0.108
MA0061.1	MA0061.1	0.314
MA0062.2	MA0062.2	0.678
MA0065.2	MA0065.2	0.303
MA0066.1	MA0066.1	0.337
MA0067.1	MA0067.1	0.604
MA0068.1	MA0068.1	0.0492
MA0069.1	MA0069.1	0.565
MA0070.1	MA0070.1	0.532
MA0071.1	MA0071.1	0.92
MA0072.1	MA0072.1	0.315
MA0073.1	MA0073.1	0.918
MA0074.1	MA0074.1	0.861
MA0076.1	MA0076.1	0.64
MA0077.1	MA0077.1	0.153
MA0078.1	MA0078.1	0.409
MA0079.2	MA0079.2	0.402
MA0080.2	MA0080.2	0.018
MA0081.1	MA0081.1	0.555
MA0083.1	MA0083.1	0.33
MA0084.1	MA0084.1	0.87
MA0087.1	MA0087.1	0.444
MA0088.1	MA0088.1	0.707
MA0090.1	MA0090.1	0.242
MA0091.1	MA0091.1	0.0526
MA0092.1	MA0092.1	0.143
MA0093.1	MA0093.1	0.00377
MA0099.2	MA0099.2	4.7538e-13
MA0100.1	MA0100.1	0.692
MA0101.1	MA0101.1	0.257
MA0102.2	MA0102.2	0.182
MA0103.1	MA0103.1	0.375
MA0104.2	MA0104.2	0.0865
MA0105.1	MA0105.1	0.00118
MA0106.1	MA0106.1	0.496
MA0107.1	MA0107.1	0.579
MA0108.2	MA0108.2	0.189
MA0111.1	MA0111.1	0.916
MA0112.2	MA0112.2	0.0262
MA0113.1	MA0113.1	0.312
MA0114.1	MA0114.1	0.256
MA0115.1	MA0115.1	0.0137
MA0116.1	MA0116.1	0.00241
MA0117.1	MA0117.1	0.217
MA0119.1	MA0119.1	0.943
MA0122.1	MA0122.1	0.559
MA0124.1	MA0124.1	0.483
MA0125.1	MA0125.1	0.953
MA0131.1	MA0131.1	0.145
MA0135.1	MA0135.1	0.47
MA0136.1	MA0136.1	0.214
MA0137.2	MA0137.2	0.413
MA0138.2	MA0138.2	0.569
MA0139.1	MA0139.1	0.64
MA0140.1	MA0140.1	0.0407
MA0141.1	MA0141.1	0.901
MA0142.1	MA0142.1	0.639
MA0143.1	MA0143.1	0.611
MA0144.1	MA0144.1	0.459
MA0145.1	MA0145.1	0.345
MA0146.1	MA0146.1	0.73
MA0147.1	MA0147.1	0.056
MA0148.1	MA0148.1	0.0239
MA0149.1	MA0149.1	0.0379
MA0150.1	MA0150.1	0.365
MA0152.1	MA0152.1	0.625
MA0153.1	MA0153.1	0.524
MA0154.1	MA0154.1	0.0355
MA0155.1	MA0155.1	0.364
MA0156.1	MA0156.1	0.363
MA0157.1	MA0157.1	0.783
MA0159.1	MA0159.1	0.931
MA0160.1	MA0160.1	0.305
MA0162.1	MA0162.1	0.204
MA0163.1	MA0163.1	0.00106
MA0164.1	MA0164.1	0.508
MA0258.1	MA0258.1	0.195
MA0259.1	MA0259.1	0.253

FANTOM5 phase1 novel unique motifsSummary:Association of the 169 novel and unique motifs discovered in FANTOM5 phase1 in this sample. Among the de-novo motifs discovered by DMF, HOMER,ChIPMunk, and ScanAll, only novel motifs are selected after comparison with known motif sets, and their clustering based on MACRO-APE resulted in169 novel and unique motifs. Their association to the promoter expression is evaluated in the same way to the JASPAR motif above Analyst: Michiel de Hoon link to dataset. data

library id: CNhs11731

Novel motif	Logo	P-value
1	1	0.227
10	10	0.2
100	100	0.744
101	101	0.631
102	102	0.156
103	103	0.47
104	104	0.93
105	105	0.302
106	106	0.0517
107	107	0.79
108	108	0.956
109	109	0.582
11	11	0.0194
110	110	0.298
111	111	0.177
112	112	0.189
113	113	0.0817
114	114	0.71
115	115	0.497
116	116	0.314
117	117	0.859
118	118	0.502
119	119	0.723
12	12	0.453
120	120	0.568
121	121	0.822
122	122	0.186
123	123	0.745
124	124	0.527
125	125	0.448
126	126	0.919
127	127	0.782
128	128	0.0653
129	129	0.453
13	13	0.87
130	130	0.00938
131	131	0.0131
132	132	0.479
133	133	0.0592
134	134	0.116
135	135	0.00197
136	136	0.319
137	137	0.326
138	138	0.708
139	139	0.623
14	14	0.78
140	140	0.353
141	141	0.776
142	142	0.528
143	143	0.807
144	144	0.235
145	145	0.338
146	146	0.981
147	147	0.0717
148	148	0.613
149	149	0.148
15	15	0.104
150	150	0.689
151	151	0.555
152	152	0.921
153	153	0.41
154	154	0.595
155	155	0.342
156	156	0.86
157	157	0.162
158	158	0.904
159	159	0.878
16	16	0.437
160	160	0.249
161	161	0.621
162	162	0.726
163	163	0.933
164	164	0.209
165	165	0.988
166	166	0.309
167	167	0.349
168	168	0.636
169	169	0.245
17	17	0.701
18	18	0.966
19	19	0.0411
2	2	0.19
20	20	0.0848
21	21	0.735
22	22	0.612
23	23	0.501
24	24	0.787
25	25	0.245
26	26	0.234
27	27	0.166
28	28	0.457
29	29	0.0773
3	3	0.136
30	30	0.894
31	31	0.352
32	32	4.9331e-5
33	33	0.339
34	34	0.722
35	35	0.116
36	36	0.585
37	37	0.142
38	38	0.796
39	39	0.357
4	4	0.173
40	40	0.301
41	41	0.735
42	42	0.679
43	43	0.151
44	44	0.0646
45	45	0.662
46	46	0.0523
47	47	0.431
48	48	0.42
49	49	0.543
5	5	0.291
50	50	0.274
51	51	0.85
52	52	0.508
53	53	0.141
54	54	0.919
55	55	0.844
56	56	0.495
57	57	0.298
58	58	0.0258
59	59	0.0317
6	6	0.0925
60	60	0.235
61	61	0.249
62	62	0.00267
63	63	0.909
64	64	0.301
65	65	0.472
66	66	0.0164
67	67	0.424
68	68	0.714
69	69	0.961
7	7	0.773
70	70	0.583
71	71	0.0506
72	72	0.00753
73	73	0.834
74	74	0.299
75	75	0.476
76	76	0.721
77	77	0.0525
78	78	0.984
79	79	0.00255
8	8	0.441
80	80	0.987
81	81	0.00921
82	82	0.111
83	83	0.98
84	84	0.139
85	85	0.0614
86	86	0.225
87	87	0.356
88	88	0.189
89	89	0.0401
9	9	0.477
90	90	0.955
91	91	0.00533
92	92	0.561
93	93	0.419
94	94	0.727
95	95	0.759
96	96	0.305
97	97	0.333
98	98	0.432
99	99	0.916

de novo motifs identified by HOMER in promoters active in this sampleSummary:The result of HOMER in this sample is shown. Analyst:NA library id: CNhs11731

FANTOM5 (FF) ontology

Direct parent terms

is_a relathionship
EFO:0002091 biological replicate
FF:0000210 human sample
FF:0100669 embryonic cell line sample
UBERON:0001264 pancreas

Ancestor terms (non development)Summary:Connected ontology terms with is_a, part_of or located_in relationship Analyst: Hideya Kawaji link to source data data

UBERON: Anatomy
0000468 (multi-cellular organism)
0000922 (embryo)
0001264 (pancreas)
0002100 (trunk)
0000466 (immaterial anatomical entity)
0002075 (viscus)
0000062 (organ)
0000475 (organism subdivision)
0000061 (anatomical structure)
0000465 (material anatomical entity)
0002553 (anatomical cavity)
0000467 (anatomical system)
0001062 (anatomical entity)
0000480 (anatomical group)
0002323 (body cavity)
0005177 (trunk region element)
0000464 (anatomical space)
0004458 (body cavity or lining)
0000949 (endocrine system)

FF: FANTOM5
0000102 (sample by type)
0000003 (cell line sample)
0000210 (human sample)
0000101 (sample by species)
0000001 (sample)
0100669 (embryonic cell line sample)

Ancestor terms (development)Summary:Connected ontology terms with develops_from, derives_from or preceded_by relationship Analyst: Hideya Kawaji link to source data data
NA

@@ Line 1: / Line 1: @@
 {{f5samples
-|ancestors_in_anatomy_facet=UBERON:0000468,UBERON:0000922,UBERON:0002108,UBERON:0001264,UBERON:0002100,UBERON:0000160,UBERON:0000926,UBERON:0000479,UBERON:0001007,UBERON:0000077,UBERON:0000466,UBERON:0002075,UBERON:0000062,UBERON:0000475,UBERON:0004120,UBERON:0004119,UBERON:0000061,UBERON:0000465,UBERON:0000480,UBERON:0000923,UBERON:0002050,UBERON:0004921,UBERON:0005423,UBERON:0002553,UBERON:0000481,UBERON:0000467,UBERON:0001062,UBERON:0005291,UBERON:0002323,UBERON:0005177,UBERON:0003104,UBERON:0000464,UBERON:0004458,UBERON:0001048,UBERON:0000925,UBERON:0006598,UBERON:0003886,UBERON:0003922,UBERON:0004185,UBERON:0002532,UBERON:0001555,UBERON:0002114,UBERON:0005409,UBERON:0007026,UBERON:0001041,UBERON:0000949,UBERON:0009142,UBERON:0003923,UBERON:0006595,UBERON:0006603,UBERON:0001045,UBERON:0003924,UBERON:0003921
+|DRA_sample_Accession=CAGE@SAMD00005594
+|accession_numbers=CAGE;DRX007872;DRR008744;DRZ000169;DRZ001554;DRZ011519;DRZ012904
+|ancestors_in_anatomy_facet=UBERON:0000468,UBERON:0000922,UBERON:0001264,UBERON:0002100,UBERON:0000466,UBERON:0002075,UBERON:0000062,UBERON:0000475,UBERON:0000061,UBERON:0000465,UBERON:0002553,UBERON:0000467,UBERON:0001062,UBERON:0000480,UBERON:0002323,UBERON:0005177,UBERON:0000464,UBERON:0004458,UBERON:0000949
 |ancestors_in_cell_lineage_facet=
 |ancestors_in_disease_facet=
+|ancestors_in_ff_facet=FF:0000102,FF:0000003,FF:0000210,FF:0000101,FF:0000001,FF:0100669
 |comment=
 |created_by=
 |creation_date=
+|data_phase=2
+|datafreeze_phase=2
 |def=
 |expression_enrichment_score=chr3:12330560..12330579,+!p1@PPARG!1.78!67.79!PPARG;;chr2:172967621..172967637,-!p1@DLX2!1.70!126.28!DLX2;;chr20:42543441..42543497,+!p1@TOX2!1.48!128.28!TOX2;;chr20:55204351..55204377,+!p1@TFAP2C!1.48!36.56!TFAP2C;;chr15:67418119..67418162,+!p5@SMAD3!1.43!28.58!SMAD3;;chr20:42543506..42543549,+!p2@TOX2!1.39!55.17!TOX2;;chr2:45168997..45169020,+!p4@SIX3!1.32!19.94!SIX3;;chr11:65667884..65667895,-!p2@FOSL1!1.31!74.44!FOSL1;;chr12:66218598..66218645,+!p2@HMGA2!1.26!78.43!HMGA2;;chr6:34204921..34204939,+!p3@HMGA1!1.25!494.50!HMGA1;;chr15:67418047..67418093,+!p4@SMAD3!1.24!20.60!SMAD3;;chr12:66218836..66218888,+!p1@HMGA2!1.21!139.58!HMGA2;;chr2:45168834..45168847,+!p2@SIX3!1.21!15.29!SIX3;;chr16:86600426..86600441,+!p1@FOXC2!1.17!33.90!FOXC2;;chr6:10415484..10415508,-!p3@TFAP2A!1.16!13.29!TFAP2A;;chr6:126240380..126240430,+!p2@NCOA7!1.15!33.90!NCOA7;;chr12:27485785..27485816,+!p1@ARNTL2!1.12!85.08!ARNTL2;;chr6:10412600..10412637,-!p1@TFAP2A!1.11!19.94!TFAP2A;;chr3:12329358..12329393,+!p3@PPARG!1.10!28.58!PPARG;;chr11:65667846..65667868,-!p1@FOSL1!1.09!297.76!FOSL1;;chr20:55205825..55205847,+!p2@TFAP2C!1.09!11.30!TFAP2C;;chr12:19592405..19592492,+!p2@AEBP2!1.07!93.72!AEBP2;;chr2:176969228..176969260,+!p1@HOXD11!1.07!10.63!HOXD11;;chr2:101436564..101436647,+!p1@NPAS2!1.06!213.35!NPAS2;;chr12:66218003..66218018,+!p9@HMGA2!1.05!12.63!HMGA2;;chr17:41623692..41623715,-!p1@ETV4!1.04!43.20!ETV4;;chr6:10412392..10412409,-!p4@TFAP2A!1.04!11.30!TFAP2A;;chr16:86612320..86612394,+!p1@FOXL1!1.04!9.97!FOXL1;;chr17:70117153..70117174,+!p1@SOX9!1.02!99.03!SOX9;;chr7:26191809..26191890,+!p1@NFE2L3!1.02!47.86!NFE2L3;;chr2:200323414..200323455,-!p1@SATB2!1.02!20.60!SATB2;;chr9:129376201..129376225,+!p1@LMX1B!1.01!9.31!LMX1B;;chr9:110252035..110252057,-!p1@KLF4!1.00!148.22!KLF4;;chr2:200322654..200322707,-!p2@SATB2!1.00!13.29!SATB2;;chr1:25256756..25256774,-!p1@RUNX3!0.99!16.62!RUNX3;;chr17:41622925..41622976,-!p3@ETV4!0.99!13.29!ETV4;;chr6:126240463..126240489,+!p6@NCOA7!0.99!9.97!NCOA7;;chr11:65686802..65686818,+!p6@DRAP1!0.97!14.62!DRAP1;;chr6:34204672..34204692,+!p1@HMGA1!0.95!928.52!HMGA1;;chr11:61520075..61520136,+!p1@C11orf9!0.95!17.28!C11orf9;;chr10:8095593..8095625,+!p3@GATA3!0.95!9.31!GATA3;;chr21:38071430..38071456,+!p1@SIM2!0.95!7.98!SIM2;;chr15:67418177..67418204,+!p9@SMAD3!0.95!7.98!SMAD3;;chr16:86600870..86600921,+!p2@FOXC2!0.95!7.98!FOXC2;;chr9:114287433..114287513,+!p1@ZNF483!0.94!20.60!ZNF483;;chr17:41622765..41622821,-!p2@ETV4!0.94!11.96!ETV4;;chr12:66218443..66218461,+!p8@HMGA2!0.94!9.97!HMGA2;;chr14:61116183..61116208,-!p1@SIX1!0.93!29.24!SIX1;;chr17:46687959..46688007,-!p2@HOXB7!0.93!10.63!HOXB7;;chr10:8096772..8096787,+!p2@GATA3!0.92!8.64!GATA3;;chr3:157823517..157823562,-!p1@SHOX2!0.92!7.98!SHOX2;;chr2:176969179..176969226,+!p2@HOXD11!0.92!7.31!HOXD11;;chr12:27485823..27485868,+!p2@ARNTL2!0.91!29.91!ARNTL2;;chr12:19592602..19592648,+!p1@AEBP2!0.90!84.41!AEBP2;;chr12:66218573..66218596,+!p7@HMGA2!0.90!10.63!HMGA2;;chr20:32274179..32274213,-!p1@E2F1!0.89!47.19!E2F1;;chr9:109625229..109625282,+!p2@ZNF462!0.89!11.30!ZNF462;;chr6:126240442..126240459,+!p4@NCOA7!0.88!8.64!NCOA7;;chr5:174151612..174151633,+!p2@MSX2!0.88!6.65!MSX2;;chr7:27153454..27153469,-!p2@HOXA3!0.88!6.65!HOXA3;;chr15:67391010..67391046,+!p13@SMAD3!0.88!6.65!SMAD3;;chr17:46806067..46806097,-!p1@HOXB13!0.88!6.65!HOXB13;;chr13:79177703..79177729,-!p2@POU4F1!0.88!6.65!POU4F1;;chr20:48599506..48599526,+!p1@SNAI1!0.86!42.54!SNAI1;;chr11:47279504..47279563,+!p1@NR1H3!0.86!14.62!NR1H3;;chr17:46126136..46126152,+!p1@NFE2L1!0.85!331.66!NFE2L1;;chr12:77459306..77459365,-!p1@E2F7!0.85!81.09!E2F7;;chr5:321810..321877,+!p1@AHRR!0.84!19.94!AHRR;;chr2:172950227..172950249,+!p2@DLX1!0.84!5.98!DLX1;;chr2:45168959..45168990,+!p6@SIX3!0.84!5.98!SIX3;;chr17:35294075..35294102,+!p1@ENST00000559335!0.84!5.98!LHX1;;chr21:38071403..38071428,+!p2@SIM2!0.84!5.98!SIM2;;chr11:65686732..65686756,+!p2@DRAP1!0.83!25.92!DRAP1;;chr5:174151553..174151610,+!p1@MSX2!0.83!9.97!MSX2;;chr2:10183651..10183713,+!p1@KLF11!0.82!44.53!KLF11;;chr3:141868357..141868393,-!p3@TFDP2!0.82!39.21!TFDP2;;chr12:66218255..66218304,+!p3@HMGA2!0.82!15.95!HMGA2;;chr19:33864571..33864596,+!p2@CEBPG!0.82!14.62!CEBPG;;chr8:67525443..67525459,-!p2@MYBL1!0.82!8.64!MYBL1;;chr8:103665947..103665981,-!p3@KLF10!0.81!7.98!KLF10;;chr13:45010939..45011033,-!p1@TSC22D1!0.80!380.85!TSC22D1;;chr12:66218378..66218401,+!p6@HMGA2!0.80!8.64!HMGA2;;chr19:33865009..33865090,+!p3@CEBPG!0.80!7.31!CEBPG;;chr12:54447599..54447630,+!p3@HOXC4!0.80!6.65!HOXC4;;chr6:10415276..10415341,-!p2@TFAP2A!0.80!6.65!TFAP2A;;chr2:45169143..45169167,+!p5@SIX3!0.80!5.32!SIX3;;chr15:67418099..67418118,+!p16@SMAD3!0.80!5.32!SMAD3;;chr17:41622731..41622764,-!p5@ETV4!0.80!5.32!ETV4;;chr17:46682321..46682362,-!p1@HOXB6!0.80!5.32!HOXB6;;chr5:180288248..180288291,-!p1@ZFP62!0.79!34.56!ZFP62;;chr20:50179368..50179392,-!p2@NFATC2!0.78!6.65!NFATC2;;chr3:169381420..169381535,-!p1@MECOM!0.78!5.98!MECOM;;chr8:103667935..103667960,-!p1@KLF10!0.77!239.28!KLF10;;chr15:37392724..37392757,-!p1@MEIS2!0.77!24.59!MEIS2;;chr6:45390002..45390023,+!p6@RUNX2!0.76!8.64!RUNX2;;chr6:126102292..126102329,+!p3@NCOA7!0.75!16.62!NCOA7;;chr16:54320675..54320715,-!p1@IRX3!0.75!10.63!IRX3;;chr2:172949484..172949522,+!p1@DLX1!0.75!4.65!DLX1;;chr2:172967323..172967336,-!p4@DLX2!0.75!4.65!DLX2;;chr13:100634004..100634025,+!p2@ZIC2!0.75!4.65!ZIC2;;chr13:45009301..45009320,-!p7@TSC22D1!0.75!4.65!TSC22D1;;chr3:185826855..185826911,-!p1@ETV5!0.74!136.25!ETV5;;chr18:19749541..19749557,+!p1@GATA6!0.74!15.29!GATA6;;chr12:80084167..80084197,-!p5@PAWR!0.74!11.30!PAWR;;chr16:30537839..30537929,-!p1@ZNF768!0.73!30.57!ZNF768;;chr9:14314131..14314147,-!p2@NFIB!0.73!27.25!NFIB;;chr12:26277956..26277980,-!p1@BHLHE41!0.73!17.28!BHLHE41;;chr12:27485762..27485776,+!p3@ARNTL2!0.73!12.63!ARNTL2;;chr6:45389791..45389832,+!p3@RUNX2!0.73!11.96!RUNX2;;chr3:185826814..185826825,-!p3@ETV5!0.73!8.64!ETV5;;chr12:26278008..26278024,-!p4@BHLHE41!0.73!5.32!BHLHE41;;chr14:33408072..33408114,+!p2@NPAS3!0.73!5.32!NPAS3;;chr12:124873357..124873401,-!p1@NCOR2!0.72!55.17!NCOR2;;chr12:124873852..124873881,-!p3@NCOR2!0.72!28.58!NCOR2;;chr20:42295713..42295738,+!p2@MYBL2!0.72!27.92!MYBL2;;chr10:8096631..8096660,+!p1@GATA3!0.72!5.32!GATA3;;chr4:4291861..4291913,-!p1@LYAR!0.71!109.00!LYAR;;chr17:38256822..38256851,-!p1@NR1D1!0.71!36.56!NR1D1;;chr17:41277372..41277418,-!p1@BRCA1!0.71!16.62!BRCA1;;chr5:178157609..178157650,-!p2@ZNF354A!0.71!12.63!ZNF354A;;chr9:110252074..110252079,-!p3@KLF4!0.71!7.31!KLF4;;chr5:178157651..178157689,-!p1@ZNF354A!0.70!18.61!ZNF354A;;chr6:10412576..10412599,-!p5@TFAP2A!0.70!3.99!TFAP2A;;chr17:46691732..46691766,-!p4@HOXB8!0.70!3.99!HOXB8;;chr17:48045917..48045977,+!p1@DLX4!0.70!3.99!DLX4;;chr17:48046543..48046575,+!p2@DLX4!0.70!3.99!DLX4;;chr18:55102598..55102623,+!p1@ONECUT2!0.70!3.99!ONECUT2;;chr22:19748231..19748317,+!p1@TBX1!0.70!3.99!TBX1;;chr2:100721328..100721348,-!p4@AFF3!0.70!3.99!AFF3;;chr2:172967353..172967365,-!p5@DLX2!0.70!3.99!DLX2;;chr2:42721205..42721307,+!p4@MTA3!0.70!3.99!MTA3;;chr2:45169684..45169715,+!p9@SIX3!0.70!3.99!SIX3;;chr13:100634031..100634045,+!p1@ZIC2!0.70!3.99!ZIC2;;chr13:100634130..100634143,+!p3@ZIC2!0.70!3.99!ZIC2;;chr9:126774018..126774055,+!p1@LHX2!0.70!3.99!LHX2;;chr1:212782094..212782109,+!p1@ATF3!0.69!120.97!ATF3;;chr9:110250697..110250738,-!p2@KLF4!0.69!4.65!KLF4;;chr20:42295745..42295765,+!p1@MYBL2!0.68!71.78!MYBL2;;chr15:37392616..37392638,-!p2@MEIS2!0.68!13.29!MEIS2;;chr5:176449684..176449722,+!p1@ZNF346!0.67!81.75!ZNF346;;chr1:120190786..120190915,-!p1@ZNF697!0.67!30.57!ZNF697;;chr6:12012170..12012245,+!p1@HIVEP1!0.67!21.27!HIVEP1;;chr7:138666053..138666146,-!p1@KIAA1549!0.67!17.28!KIAA1549;;chr6:126102254..126102289,+!p5@NCOA7!0.67!11.30!NCOA7;;chr22:22863052..22863133,-!p1@ZNF280B!0.67!10.63!ZNF280B;;chr3:12329397..12329433,+!p2@PPARG!0.67!9.31!PPARG;;chr17:79885633..79885645,-!p4@MAFG!0.67!6.65!MAFG;;chr12:80083722..80083766,-!p12@PAWR!0.67!5.32!PAWR;;chr6:126240356..126240379,+!p7@NCOA7!0.67!4.65!NCOA7;;chr6:85473156..85473210,-!p2@TBX18!0.67!4.65!TBX18;;chr17:41622834..41622883,-!p6@ETV4!0.67!4.65!ETV4;;chr3:12329320..12329338,+!p4@PPARG!0.67!3.99!PPARG;;chr19:45908292..45908374,-!p1@PPP1R13L!0.66!36.56!PPP1R13L;;chr12:96588368..96588394,+!p3@ELK3!0.66!10.63!ELK3;;chr3:40566371..40566400,+!p2@ZNF621!0.66!8.64!ZNF621;;chr20:32274150..32274166,-!p2@E2F1!0.66!7.31!E2F1;;chr1:214161272..214161322,+!p1@PROX1!0.66!5.32!PROX1;;chr2:239148671..239148686,-!p1@HES6!0.65!14.62!HES6;;chr17:41623009..41623053,-!p4@ETV4!0.65!5.98!ETV4;;chr10:48355030..48355090,+!p1@ZNF488!0.65!4.65!ZNF488;;chr5:178286925..178287007,+!p1@ZNF354B!0.64!22.60!ZNF354B;;chr11:128392273..128392308,-!p2@ETS1!0.64!16.62!ETS1;;chr8:67525473..67525518,-!p1@MYBL1!0.64!8.64!MYBL1;;chr10:94449649..94449664,+!p3@HHEX!0.64!5.32!HHEX;;chr10:124895472..124895508,+!p1@HMX3!0.64!3.32!HMX3;;chr14:37131058..37131139,+!p1@PAX9!0.64!3.32!PAX9;;chr17:46806098..46806118,-!p3@HOXB13!0.64!3.32!HOXB13;;chr2:200323212..200323223,-!p8@SATB2!0.64!3.32!SATB2;;chr2:45169024..45169033,+!p12@SIX3!0.64!3.32!SIX3;;chr5:50679228..50679288,+!p1@ISL1!0.64!3.32!ISL1;;chr13:27998831..27998851,+!p2@GTF3A!0.63!23.26!GTF3A;;chr2:37458692..37458745,-!p1@CEBPZ!0.62!142.90!CEBPZ;;chr12:96588143..96588185,+!p1@ELK3!0.62!45.86!ELK3;;chr6:1389789..1389821,+!p1@FOXF2!0.62!4.65!FOXF2;;chr3:14989024..14989041,+!p3@NR2C2!0.62!4.65!NR2C2;;chr19:45971246..45971265,+!p1@FOSB!0.61!69.12!FOSB;;chr12:80083807..80083859,-!p11@PAWR!0.61!3.99!PAWR;;chr5:72744562..72744573,-!p3@FOXD1!0.61!3.99!FOXD1;;chr12:66218152..66218174,+!p10@HMGA2!0.61!3.32!HMGA2;;chr9:88969339..88969422,-!p2@ZCCHC6!0.60!27.92!ZCCHC6;;chr2:178257401..178257432,-!p4@NFE2L2!0.60!19.94!NFE2L2;;chr8:144373550..144373617,+!p1@ZNF696!0.60!12.63!ZNF696;;chrX:101186981..101187030,-!p1@ZMAT1!0.60!11.30!ZMAT1;;chr12:19592493..19592524,+!p3@AEBP2!0.60!9.31!AEBP2;;chr14:64971014..64971044,+!p4@ZBTB1!0.60!5.32!ZBTB1;;chr6:1312325..1312340,+!p1@FOXQ1!0.6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@@ Line 35: / Line 40: @@
 |fonse_treatment_closure=
 |has_quality=
+|hg19bam=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.cell_line.hCAGE/embryonic%2520pancreas%2520cell%2520line%253a1B2C6.CNhs11731.10604-108F1.hg19.nobarcode.bam
+|hg19ctss=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.cell_line.hCAGE/embryonic%2520pancreas%2520cell%2520line%253a1B2C6.CNhs11731.10604-108F1.hg19.ctss.bed.gz
+|hg19fasta=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.cell_line.hCAGE/embryonic%2520pancreas%2520cell%2520line%253a1B2C6.CNhs11731.10604-108F1.hg19.nobarcode.rdna.fa.gz
+|hg38bam=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.cell_line.hCAGE/embryonic%2520pancreas%2520cell%2520line%253a1B2C6.CNhs11731.10604-108F1.hg38.nobarcode.bam
+|hg38ctss=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.cell_line.hCAGE/embryonic%2520pancreas%2520cell%2520line%253a1B2C6.CNhs11731.10604-108F1.hg38.nobarcode.ctss.bed.gz
 |id=FF:10604-108F1
 |is_a=EFO:0002091;;FF:0000210;;FF:0100669;;UBERON:0001264
 |is_obsolete=
+|library_id=CNhs11731
+|library_id_phase_based=2:CNhs11731
+|microRNAs=
+|microRNAs_nn=
+|microRNAs_nonnovel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer/#/human#cage;sample;10604
+|microRNAs_novel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer_novel/#/human#cage;sample;10604
 |name=embryonic pancreas cell line:1B2C6
 |namespace=FANTOM5
@@ Line 43: / Line 59: @@
 |profile_cagescan=,,,
 |profile_hcage=CNhs11731,LSID819,release009,COMPLETED
-|profile_rnaseq=,,,
+|profile_rnaseq=
 |profile_srnaseq=,,,
+|refex=http://refex.dbcls.jp/genelist.php?lang
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 |rna_box=108
 |rna_catalog_number=
@@ Line 58: / Line 77: @@
 |rna_weight_ug=38.44177
 |sample_age=19 week embryo
+|sample_category=cell lines
 |sample_cell_catalog=RCB0795
 |sample_cell_line=1B2C6
@@ Line 79: / Line 99: @@
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 |xref=
+|zenbu_report=https://fantom.gsc.riken.jp/zenbu/reports/#miRNA_expression_atlas_human;search_select_hide=table111:FF:10604-108F1;search_select_hide=table117:FF:10604-108F1
 }}

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FF:10604-108F1: Difference between revisions

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Latest revision as of 14:30, 3 June 2020

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	Mozilla Cavendish skin modified by DaSch for the Web Community Wiki GitHub project page – Report a bug – Skin version: 2.6.0