FF:11257-116F6: Difference between revisions

Latest revision as of 16:28, 3 June 2020

Name:	Smooth Muscle Cells - Prostate, donor1
Species:	Human (Homo sapiens)
Library ID:	CNhs11920
Sample type:	primary cells
Genomic View:	UCSC
RefEX:	Specific genes
FANTOM CAT:	1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16
CAGEd-oPOSSUM:	link
ZENBU report :	link

Additional information

Sample information

strain	NA
tissue	prostate
dev stage	40 years old adult
sex	male
age	40
cell type	smooth muscle cell
cell line	NA
company	Lonza
collaboration	FANTOM5 OSC CORE (contact: Al Forrest)
External link for information	[{{{sample_info_link}}} {{{sample_info_link}}}]

RNA information

lot number	NA
catalog number	N/A
sample type	total RNA
extraction protocol (Details)	OP-RNA-extraction-totalRNA-miRNeasy_Mini-v1.0

CAGE Accession numbers

Method		Sample accession id
CAGE		SAMD00005720

Library accession numbers

Library id		Method		Exp. accession id		Run accession id
CNhs11920		CAGE		DRX008495		DRR009367

Accession ID Hg19

Library id		BAM		CTSS
CNhs11920		DRZ000792		DRZ002177

Accession ID Hg38

Library id		BAM		CTSS
CNhs11920		DRZ012142		DRZ013527

Download raw sequence, BAM & CTSS

Hg19

Fasta	BAM	CTSS
download	download	donwload

Hg38

BAM	CTSS
download	donwload

RNA-Seq Accession numbers

Method		Sample accession id
sRNA-Seq		SAMD00005720

Library accession numbers

Library id		Method		Exp. accession id		Run accession id
SRhi10002.GTCCGC		sRNA-Seq		DRX037005		DRR041371

Accession ID Hg19

Library id		BAM		CTSS
SRhi10002.GTCCGC		DRZ007013

Relative expression to median (log10)

Transcription factors with enriched expression in this sampleRanked list of transcription factor promoter expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.

Co-expression clusters with enriched expression in this sampleRanked list of co-expression cluster expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed. Analyst:NA link to dataset. data

Coexpression cluster	score
C0-CD14-Eosinophils-Neutrophils-Basophils-CD34-immature-Peripheral	0
C1-testis-epididymis-embryonic-medulla-pituitary-trachea-caudate	0
C10-occipital-temporal-parietal-brain-duodenum-Neurons-Neural	0
C100-rhabdomyosarcoma-gastric-pineal-Wilms-cervical-mesodermal-endometrial	0
C101-small-cerebellum-maxillary-colon-parietal-epididymis-merkel	0
C102-neuroblastoma-testicular-pituitary-carcinosarcoma-rectum-acantholytic-iPS	0
C103-CD4-CD8-Natural-Peripheral-Whole-Neutrophils-Basophils	0
C104-Mast-Basophils-immature-CD14-CD34-eye-Natural	0
C105-heart-skeletal-occipital-hippocampus-acute-Sebocyte-penis	-0.0721
C106-Hep2-epitheloid-placenta-cervical-rectal-anaplastic-glassy	0
C107-Neutrophils-CD14-Eosinophils-Monocytederived-Whole-Peripheral-blood	0
C108-breast-hepatoblastoma-MCF7-parotid-salivary-submaxillary-prostate	0
C109-Reticulocytes-non-acute-Hodgkin-Burkitt-retinoblastoma-lymphoma	0.226
C11-cerebellum-medulla-pons-parietal-occipital-middle-medial	0
C110-leukemia-chronic-Eosinophils-acute-Whole-CD34-Lymphatic	0
C111-medulla-lung-trachea-testis-caudate-epididymis-throat	0
C112-gastric-pancreas-temporal-duodenum-small-extraskeletal-adrenal	0
C113-thyroid-throat-lung-lymph-small-colon-trachea	0
C114-teratocarcinoma-medulloblastoma-carcinosarcoma-iPS-anaplastic-acute-neuroblastoma	0
C115-pituitary-Neural-caudate-putamen-amygdala-medulla-hippocampus	0
C116-myeloma-xeroderma-tonsil-CD19-spleen-lymph-trachea	0
C117-serous-clear-kidney-neuroectodermal-mesothelioma-endometrial-Intestinal	0
C118-cerebellum-parietal-occipital-medial-middle-frontal-insula	0
C119-CD4-CD8-Natural-Neutrophils-CD14-Peripheral-CD19	0
C12-Mast-Basophils-immature-chorionic-mature-CD14-Eosinophils	0
C120-immature-salivary-tongue-skin-cervical-CD14-CD34	0
C121-NK-Natural-CD8-CD4-anaplastic-chronic-B	0
C122-chronic-Reticulocytes-skeletal-leukemia-acute-colon-Tracheal	0
C123-CD19-Natural-CD8-CD4-CD14-Peripheral-Basophils	0
C124-small-temporal-duodenum-colon-gall-signet-Hepatocyte	0
C125-mucinous-alveolar-mesothelioma-Smooth-lung-CD14-Nucleus	0
C126-gastrointestinal-argyrophil-smallcell-merkel-bile-insula-brain	0
C127-maxillary-small-hepatoblastoma-hepatocellular-alveolar-colon-argyrophil	0
C128-testicular-choriocarcinoma-H9-teratocarcinoma-pancreatic-iPS-HES3GFP	0
C129-liver-Hepatocyte-colon-duodenum-temporal-testicular-small	0
C13-Neutrophils-Eosinophils-CD14-Monocytederived-Whole-Peripheral-CD4	0
C130-iPS-HES3GFP-H9-teratocarcinoma-testicular-colon-Alveolar	0
C131-lung-trachea-Alveolar-thyroid-umbilical-throat-skin	0
C132-acute-small-Dendritic-Macrophage-CD14-Neutrophils-Monocytederived	0
C133-signet-gall-small-kidney-colon-ductal-adenocarcinoma	0
C134-skeletal-diaphragm-tongue-throat-Skeletal-skin-penis	0
C135-neuroblastoma-retinoblastoma-carcinoid-choriocarcinoma-testicular-acute-rectum	0
C136-Wilms-extraskeletal-anaplastic-rhabdomyosarcoma-cholangiocellular-nonsmall-neuroectodermal	0
C137-large-ductal-melanoma-cervical-Endothelial-Smooth-chronic	0
C138-diffuse-Burkitt-lymphangiectasia-lymphoma-acute-CD19-pineal	0
C139-astrocytoma-skin-salivary-gall-serous-Mallassezderived-renal	0
C14-Whole-blood-Reticulocytes-liver-Neutrophils-Eosinophils-spleen	0
C140-Renal-Endothelial-Hepatic-Lymphatic-heart-lung-spleen	0
C141-Hodgkin-acute-thymus-chronic-vein-CD4-B	0
C142-Preadipocyte-Fibroblast-hepatic-Ewing-Adipocyte-Olfactory-Hair	0.165
C143-Monocytederived-CD14-Macrophage-Dendritic-Basophils-CD14CD16-Osteoblast	0
C144-CD4-tonsil-NK-appendix-CD8-splenic-mycosis	0
C145-neuroblastoma-peripheral-neuroectodermal-neuroepithelioma-carcinoid-adult-extraskeletal	0
C146-lymphangiectasia-lymphoma-gall-lymph-tonsil-gastric-transitionalcell	0
C147-Neutrophils-Eosinophils-CD4-CD14-CD8-Natural-Peripheral	0
C148-kidney-small-epididymis-pancreas-serous-duodenum-temporal	0
C149-occipital-medial-brain-amygdala-parietal-cerebral-cerebellum	0
C15-anaplastic-small-skeletal-neuroblastoma-parietal-temporal-tongue	0
C150-merkel-carcinoid-nonsmall-gastrointestinal-argyrophil-pineal-small	0
C151-CD14-Natural-Basophils-CD8-Eosinophils-CD4-Mast	0
C152-peripheral-neuroectodermal-neuroepithelioma-neuroblastoma-testicular-carcinoid-lung	0
C153-rhabdomyosarcoma-liposarcoma-pancreatic-somatostatinoma-Reticulocytes-lymphoma-testicular	0
C154-adenocarcinoma-Mesenchymal-Cardiac-small-sacrococcigeal-Smooth-Prostate	0
C155-pituitary-placenta-nonsmall-cervical-smallcell-choriocarcinoma-epitheloid	0
C156-plasma-splenic-hereditary-B-large-xeroderma-b	0
C157-testicular-H9-testis-iPS-teratocarcinoma-colon-trachea	0
C158-adrenal-gastric-temporal-parietal-duodenum-caudate-putamen	0
C159-choriocarcinoma-pancreatic-placenta-chorionic-testicular-bronchioalveolar-seminal	0
C16-medial-amygdala-occipital-parietal-olfactory-putamen-brain	0
C160-medulla-Hepatocyte-retina-corpus-liver-pineal-cerebral	0
C161-mesothelioma-Mesothelial-acute-mesenchymal-extraskeletal-renal-placenta	0
C162-spinal-locus-medulla-substantia-thalamus-globus-diencephalon	0
C163-Skeletal-skeletal-Pericytes-Hepatic-rhabdomyosarcoma-throat-mesenchymal	0
C164-signet-corpus-optic-mucinous-substantia-salivary-choriocarcinoma	0
C165-epithelioid-Adipocyte-mesothelioma-myxofibrosarcoma-lung-gastric-Mesothelial	0
C166-Macrophage-Monocytederived-Dendritic-adipose-lymph-CD14-lung	0
C167-Basophils-Mast-Eosinophils-Neutrophils-Peripheral-Whole-CD4	0
C168-Mast-CD14-immature-Basophils-Eosinophils-CD34-Peripheral	0
C169-hereditary-adult-gall-lymphangiectasia-chronic-b-choriocarcinoma	0
C17-Mast-CD14-Monocytederived-Lymphatic-Smooth-mesenchymal-Macrophage	0
C170-epitheloid-cervical-Hep2-keratoacanthoma-adult-neuroblastoma-signet	0
C171-merkel-neuroblastoma-pineal-retinoblastoma-carcinoid-small-eye	0
C172-chorionic-skeletal-tongue-amniotic-liver-gastrointestinal-Pericytes	0.291
C173-Adipocyte-mature-skin-left-Hepatocyte-Osteoblast-adipose	0
C174-CD14-Neutrophils-Smooth-mesothelioma-embryonic-Monocytederived-Eosinophils	0
C175-Eosinophils-Neutrophils-CD4-Basophils-CD19-CD8-Natural	0
C176-Eosinophils-Neutrophils-Mast-CD14-CD4-Basophils-CD19	-0.0813
C177-melanoma-Melanocyte-mesenchymal-retina-Mallassezderived-Gingival-squamous	0
C178-spleen-liver-Hepatocyte-b-lymph-vein-thymus	0
C179-CD19-Peripheral-lymphoma-blood-lymph-spleen-tonsil	0
C18-CD4-CD8-thymus-Whole-Peripheral-Natural-blood	0
C180-skeletal-heart-Hepatocyte-acute-occipital-hippocampus-middle	-0.198
C181-liposarcoma-somatostatinoma-neuroblastoma-mesothelioma-nonsmall-small-Alveolar	0
C182-renal-mature-mesothelioma-lung-Mammary-Adipocyte-acute	0
C183-acute-non-CD34-diffuse-CD133-myeloma-Burkitt	0
C184-somatostatinoma-smallcell-nonsmall-small-gastrointestinal-pineal-thyroid	0
C185-small-adrenal-gastric-Mesenchymal-acute-HES3GFP-testis	0
C186-squamous-papillotubular-large-Tracheal-oral-Small-epidermoid	0
C187-migratory-immature-Dendritic-CD19-CD14-Monocytederived-Macrophage	0
C188-left-heart-tongue-skeletal-Skeletal-diaphragm-throat	0
C189-b-splenic-tonsil-CD19-lymph-appendix-spleen	0
C19-embryonic-testis-cord-chronic-CD14-NK-mesothelioma	0
C190-colon-small-rectum-duodenum-appendix-temporal-oral	0
C191-leiomyoblastoma-Mast-parietal-acute-bone-neuroepithelioma-embryonic	0
C192-Neutrophils-CD14-Peripheral-Eosinophils-CD8-Natural-CD4	0
C193-Mesenchymal-Adipocyte-mature-Cardiac-heart-CD14CD16-CD14	0.105
C194-MCF7-breast-prostate-Intestinal-diffuse-Wilms-Alveolar	0
C195-Small-Gingival-Bronchial-Smooth-mesenchymal-Urothelial-Tracheal	0
C196-testicular-iPS-H9-teratocarcinoma-HES3GFP-choriocarcinoma-endometrial	0
C197-tongue-esophagus-tonsil-salivary-cervix-nasal-Gingival	0
C198-Mesenchymal-Hair-Hepatic-Fibroblast-Smooth-tenocyte-Pericytes	0.398
C199-glioblastoma-B-osteosarcoma-Fibroblast-heart-rhabdomyosarcoma-myxofibrosarcoma	0
C2-Eosinophils-Neutrophils-CD14-Whole-Basophils-Peripheral-Mast	0
C20-heart-left-skeletal-diaphragm-tongue-umbilical-throat	0
C200-seminal-Cardiac-Smooth-Hair-submaxillary-Neutrophils-mixed	-0.292
C201-colon-small-adenocarcinoma-duodenum-temporal-signet-gall	0
C202-salivary-skin-penis-tongue-uterus-cervical-immature	0
C203-acute-NK-chronic-CD133-lymphoma-immature-Dendritic	0
C204-Smooth-nasal-CD4-CD19-CD8-CD14-CD34	0
C205-mycosis-cord-hairy-xeroderma-CD4-B-b	0
C206-melanoma-somatostatinoma-nonsmall-small-neuroblastoma-smallcell-pituitary	0
C207-Corneal-Keratinocyte-Esophageal-Mammary-Bronchial-Urothelial-Sebocyte	0
C208-skin-amniotic-papillotubular-salivary-umbilical-Alveolar-serous	0
C209-acute-myelodysplastic-CD34-granulocyte-CD133-liver-spleen	0
C21-cord-mycosis-hairy-xeroderma-adult-CD4-anaplastic	0
C210-Burkitt-lymphoma-appendix-acute-diffuse-CD19-tonsil	0
C211-small-Hepatocyte-liver-colon-temporal-duodenum-kidney	0
C212-chronic-acute-Whole-Reticulocytes-leukemia-blood-CD34	0
C213-CD14-Natural-CD8-CD4-Basophils-Eosinophils-Peripheral	0
C214-Neurons-Neural-duodenum-temporal-occipital-parietal-brain	0
C215-chronic-acute-peripheral-Hepatocyte-osteosarcoma-NK-immature	0
C216-osteosarcoma-Smooth-Mesenchymal-large-neuroectodermal-acute-CD34	0
C217-carcinoid-neuroectodermal-mature-mesodermal-colon-acute-occipital	0
C218-tonsil-lymph-CD19-spleen-colon-appendix-salivary	0
C219-nasal-Basophils-amniotic-Melanocyte-CD14-Osteoblast-duodenum	0
C22-CD4-CD8-Natural-Basophils-CD14-Peripheral-CD19	0
C220-Adipocyte-mature-left-breast-skin-liver-adipose	0
C221-alveolar-Osteoblast-Myoblast-mesenchymal-liposarcoma-Smooth-hepatocellular	0
C222-Melanocyte-Tracheal-Neutrophils-seminal-Smooth-Hair-Chondrocyte	-0.301
C223-Chondrocyte-basal-renal-Fibroblast-Smooth-spindle-Synoviocyte	0
C224-clear-serous-pleomorphic-choriocarcinoma-mesothelioma-amniotic-renal	0
C225-ductal-alveolar-giant-prostate-salivary-squamous-Tracheal	0
C226-Corneal-Keratinocyte-Esophageal-Urothelial-Mammary-Bronchial-Tracheal	0
C227-chorionic-amniotic-Mesenchymal-Placental-gastric-diaphragm-tongue	0
C228-colon-Intestinal-Prostate-hepatoblastoma-hepatocellular-testis-adult	0
C229-Mesenchymal-CD4-Melanocyte-acute-skeletal-left-heart	0
C23-CD4-CD8-Natural-Peripheral-Basophils-CD19-CD14	0
C230-aorta-normal-heart-penis-osteosarcoma-basal-lung	0
C231-Mesothelial-mesenchymal-mesothelioma-Fibroblast-Preadipocyte-leiomyoma-mycosis	0
C232-teratocarcinoma-HES3GFP-H9-iPS-testicular-neuroblastoma-cerebellum	0
C233-uterus-cervix-ovary-epididymis-colon-rectum-MCF7	0
C234-oral-epidermoid-malignant-cervical-ductal-lung-keratoacanthoma	0
C235-Intestinal-Prostate-liver-colon-small-kidney-pancreas	0
C236-CD14-Neutrophils-Monocytederived-renal-Eosinophils-testis-mesothelioma	0
C237-acute-breast-testicular-hepatoblastoma-chronic-argyrophil-Bronchial	0
C238-stomach-gall-breast-duodenum-temporal-MCF7-smallcell	0
C239-CD4-lymphangiectasia-CD8-NK-mycosis-Renal-hairy	0
C24-pineal-eye-retina-retinoblastoma-medulloblastoma-small-cerebral	0
C240-Adipocyte-Preadipocyte-Osteoblast-Chondrocyte-tenocyte-Synoviocyte-mesenchymal	0
C241-Reticulocytes-chronic-Tracheal-Hodgkin-Endothelial-Hair-thymus	0.111
C242-acute-Chondrocyte-myelodysplastic-granulocyte-biphenotypic-Fibroblast-stomach	0
C243-Chondrocyte-trachea-Synoviocyte-mesodermal-renal-Fibroblast-Ewing	0
C244-CD14-Monocytederived-Hepatocyte-heart-Neutrophils-acute-Macrophage	0
C245-prostate-penis-salivary-esophagus-kidney-Neutrophils-Pancreatic	0
C246-Neutrophils-Eosinophils-Whole-CD14-CD14CD16-Basophils-migratory	0
C247-pons-locus-medulla-spinal-paracentral-medial-occipital	0
C248-iPS-Aortic-Hep2-amygdala-acute-medial-Myoblast	0
C249-nonsmall-small-smallcell-occipital-somatostatinoma-maxillary-medial	0
C25-small-colon-temporal-duodenum-liver-Hepatocyte-gall	0
C250-Mast-Neutrophils-CD14-Eosinophils-CD8-Peripheral-CD4	0
C251-gall-tonsil-trachea-CD14-salivary-throat-tongue	0
C252-hepatic-Olfactory-sacrococcigeal-leiomyoma-normal-Synoviocyte-glioblastoma	0.226
C253-spleen-rhabdomyosarcoma-Hepatocyte-small-uterus-liver-rectum	0
C254-prostate-rhabdomyosarcoma-seminal-Fibroblast-transitionalcell-Smooth-Iris	0
C255-Wilms-leiomyoblastoma-kidney-adrenal-MCF7-epithelioid-Mast	0
C256-occipital-caudate-amygdala-medial-thalamus-hippocampus-medulla	0
C257-pineal-insula-frontal-occipital-temporal-medial-paracentral	0
C258-hepatoblastoma-hepatocellular-signet-colon-Intestinal-Prostate-gastric	0
C259-Preadipocyte-Adipocyte-Fibroblast-Chondrocyte-tenocyte-normal-Ewing	0.105
C26-Eosinophils-Neutrophils-CD14-CD14CD16-Basophils-Monocytederived-Whole	0
C260-acute-chronic-Natural-NK-Basophils-biphenotypic-blood	0
C261-locus-medial-parietal-pons-diencephalon-olfactory-spinal	0
C262-breast-MCF7-skeletal-Reticulocytes-mucinous-hepatoblastoma-Wilms	0
C263-cervical-keratoacanthoma-tongue-skin-esophagus-throat-tonsil	0
C264-giant-keratoacanthoma-colon-fibrosarcoma-HES3GFP-Hep2-acute	0
C265-CD4-Eosinophils-CD14-Natural-CD19-Basophils-CD8	0
C266-acute-chronic-leukemia-small-choriocarcinoma-hepatoma-Mast	0
C267-pancreatic-placenta-choriocarcinoma-testicular-teratocarcinoma-chorionic-clear	0
C268-Mallassezderived-Urothelial-Gingival-Small-Bronchial-Tracheal-Prostate	0
C269-Basophils-Mast-Eosinophils-mature-CD14-chorionic-CD4	0
C27-pancreas-temporal-duodenum-salivary-ductus-umbilical-lung	0
C270-CD4-Fibroblast-acute-iPS-Aortic-CD34-Smooth	-0.0526
C271-pineal-spinal-locus-globus-medulla-thalamus-cerebellum	0
C272-CD19-CD4-CD8-Whole-Peripheral-lymph-tonsil	0
C273-Neutrophils-CD14-Eosinophils-Monocytederived-CD4-Natural-Mast	0
C274-CD14-Mast-immature-Basophils-mature-vagina-Hepatocyte	0
C275-pons-medulla-cerebellum-locus-thalamus-diencephalon-spinal	0
C276-mesothelioma-kidney-renal-small-clear-cerebellum-Renal	0
C277-mesothelioma-epithelioid-thyroid-extraskeletal-alveolar-glioblastoma-adenocarcinoma	0
C278-amygdala-hippocampus-insula-medial-putamen-temporal-olfactory	0
C279-parietal-cerebellum-occipital-temporal-middle-duodenum-medial	0
C28-thymus-acute-vein-Hodgkin-chronic-throat-Dendritic	0
C280-Mast-Natural-CD19-CD8-Eosinophils-CD34-CD4	0
C281-Hodgkin-Reticulocytes-chronic-NK-acute-retinoblastoma-small	0.141
C282-acute-B-tonsil-CD19-submaxillary-lymph-throat	0
C283-tenocyte-Chondrocyte-mesenchymal-Macrophage-pleomorphic-Synoviocyte-cholangiocellular	0
C284-parietal-occipital-medial-temporal-olfactory-locus-hippocampus	0.033
C285-cervical-Hep2-small-colon-temporal-duodenum-bronchogenic	0
C286-cerebellum-occipital-optic-parietal-globus-caudate-medial	0
C287-Hepatocyte-Chondrocyte-Adipocyte-Synoviocyte-liver-tenocyte-mesenchymal	0
C288-Chondrocyte-Renal-Pericytes-Fibroblast-aorta-Smooth-Meningeal	0.0556
C289-chorionic-skeletal-heart-Mast-amniotic-granulosa-left	0
C29-mature-adipose-Adipocyte-breast-Lymphatic-vein-heart	0
C290-Eosinophils-CD14-Basophils-Mast-CD4-CD8-immature	0
C291-spinal-substantia-retina-medulla-tongue-skeletal-trachea	0
C292-Mesenchymal-skin-umbilical-Adipocyte-mesenchymal-Chondrocyte-skeletal	0.291
C293-CD14-CD14CD16-Basophils-Peripheral-immature-Eosinophils-CD34	0
C294-CD14-Macrophage-Monocytederived-CD14CD16-Neutrophils-Basophils-Peripheral	0
C295-Fibroblast-Smooth-Myoblast-Chondrocyte-hepatic-Synoviocyte-Preadipocyte	0.174
C296-gall-small-mesothelioma-acute-bronchioalveolar-epidermoid-mixed	0
C297-Eosinophils-CD4-Basophils-Natural-Neutrophils-CD8-Peripheral	0
C298-small-optic-substantia-thalamus-diencephalon-globus-occipital	0
C299-CD14CD16-Eosinophils-Neutrophils-CD14-Whole-Basophils-blood	0
C3-occipital-temporal-insula-medial-postcentral-frontal-amygdala	0
C30-thyroid-throat-mesothelioma-mucinous-trachea-chorionic-mesenchymal	0
C300-CD4-CD8-NK-Natural-blood-mycosis-Basophils	0
C301-Smooth-mesenchymal-Endothelial-Hepatic-basal-hepatic-chorionic	0.149
C302-acute-peripheral-Neutrophils-NK-myelodysplastic-CD34-carcinoid	0
C303-CD14-Basophils-Peripheral-Eosinophils-CD14CD16-Neutrophils-Whole	0
C305-heart-skeletal-smooth-left-bladder-penis-esophagus	0
C31-skeletal-tongue-diaphragm-throat-penis-skin-trachea	0
C32-middle-occipital-parietal-hippocampus-amygdala-medial-olfactory	0
C33-Reticulocytes-liver-Whole-blood-chronic-acute-spleen	0
C34-placenta-chorionic-choriocarcinoma-mesothelioma-Wilms-Smooth-bile	0
C35-caudate-putamen-diencephalon-nucleus-globus-thalamus-insula	0
C36-B-b-splenic-plasma-xeroderma-adrenal-Burkitt	0
C37-salivary-submaxillary-parotid-seminal-tongue-ductus-trachea	0
C38-extraskeletal-rhabdomyosarcoma-adrenal-rectal-mesothelioma-lung-Wilms	0
C39-epididymis-ductus-seminal-testis-acute-thyroid-CD133	0
C4-optic-corpus-substantia-medulla-spinal-thalamus-globus	0
C40-eye-retina-Lens-pineal-tongue-retinoblastoma-small	0
C41-retina-eye-medulla-Retinal-medulloblastoma-kidney-pineal	0
C42-small-lung-maxillary-pharyngeal-Mesenchymal-Wilms-colon	0
C43-ductus-seminal-duodenum-temporal-gall-prostate-bladder	0
C44-Dendritic-CD19-CD133-granulocyte-acute-thymus-immature	0
C45-testicular-choriocarcinoma-H9-teratocarcinoma-Wilms-pancreatic-iPS	0
C46-acute-Hodgkin-thymus-CD8-chronic-CD4-merkel	0
C47-CD19-Burkitt-acute-xeroderma-tonsil-lymphoma-appendix	0
C48-smooth-bladder-esophagus-colon-penis-aorta-uterus	0
C49-H9-iPS-testicular-HES3GFP-teratocarcinoma-hepatoblastoma-choriocarcinoma	0
C5-Hepatocyte-liver-hepatocellular-Intestinal-kidney-small-pancreas	0
C50-chorionic-placenta-amniotic-migratory-smallcell-chronic-choriocarcinoma	0
C51-kidney-mesothelioma-renal-signet-gall-lung-pancreas	0
C52-adult-NK-chronic-cord-testis-embryonic-myeloma	0
C53-medulloblastoma-pineal-retinoblastoma-small-retina-eye-pituitary	0
C54-Dendritic-Macrophage-Monocytederived-CD14-leiomyoma-adipose-immature	0
C55-hepatocellular-Intestinal-liver-Prostate-fibrosarcoma-Hepatocyte-hepatoblastoma	0
C56-heart-left-umbilical-skeletal-penis-diaphragm-tongue	0
C57-Neutrophils-Eosinophils-Whole-CD4-CD8-CD19-Natural	0
C58-Melanocyte-melanoma-retina-Retinal-eye-migratory-H9	0
C59-Smooth-Fibroblast-Mesenchymal-tenocyte-Ewing-skin-hepatic	0.464
C6-CD14-Eosinophils-Basophils-Peripheral-CD34-Natural-immature	0
C60-esophagus-tonsil-throat-tongue-uterus-cervix-cervical	0
C61-migratory-Dendritic-immature-Macrophage-xeroderma-cord-b	0
C62-Burkitt-tonsil-CD19-submaxillary-spleen-salivary-lymph	0
C63-neuroectodermal-neuroblastoma-carcinoid-peripheral-chronic-neuroepithelioma-acute	0
C64-Mast-chronic-acute-immature-chorionic-Basophils-Dendritic	0
C65-CD14-Eosinophils-Monocytederived-Basophils-immature-Macrophage-Neutrophils	0
C66-cerebellum-middle-occipital-parietal-medial-amygdala-hippocampus	0
C67-CD14-Monocytederived-Macrophage-dura-Dendritic-spleen-lung	0
C68-amniotic-chorionic-Placental-salivary-placenta-tongue-mesothelioma	0
C69-anaplastic-CD14-cord-hairy-mycosis-adult-NK	0
C7-CD14-Eosinophils-Neutrophils-Smooth-Basophils-Macrophage-Mast	0
C70-parotid-submaxillary-salivary-throat-trachea-aorta-tongue	0
C71-Monocytederived-Macrophage-CD14-Dendritic-Osteoblast-leiomyoma-Prostate	0
C72-skeletal-tongue-throat-heart-diaphragm-penis-left	0
C73-pineal-eye-retina-caudate-cerebellum-left-parietal	0
C74-splenic-B-b-plasma-xeroderma-lymphoma-hairy	0
C75-Eosinophils-Natural-CD8-Basophils-CD14-CD4-Peripheral	0
C76-argyrophil-gastrointestinal-temporal-duodenum-neuroblastoma-merkel-smallcell	0
C77-Saos2-osteosarcoma-Neutrophils-Natural-Chondrocyte-Basophils-CD8	0
C78-lymphoma-plasma-tonsil-appendix-lymph-seminal-trachea	0
C79-chorionic-Chondrocyte-Cardiac-Smooth-Fibroblast-Preadipocyte-Mesenchymal	0.232
C8-Natural-CD8-Basophils-CD4-CD14-Peripheral-CD34	0
C80-immature-migratory-CD14-Dendritic-splenic-cord-Mast	0
C81-trachea-salivary-throat-aorta-eye-submaxillary-parotid	0
C82-Basophils-CD14-Eosinophils-Natural-Peripheral-immature-CD34	0
C83-choriocarcinoma-pancreatic-placenta-chorionic-HES3GFP-testicular-amniotic	0
C84-choriocarcinoma-pancreatic-Wilms-Mallassezderived-thymus-salivary-colon	0
C85-neuroblastoma-carcinoid-retinoblastoma-small-pineal-rhabdomyosarcoma-medulloblastoma	0
C86-colon-carcinoid-small-neuroectodermal-giant-large-neuroepithelioma	0
C87-retinoblastoma-left-nonsmall-heart-small-diaphragm-bronchogenic	0
C88-Melanocyte-melanoma-Macrophage-Mesenchymal-migratory-Dendritic-Monocytederived	0
C89-small-retinoblastoma-medulloblastoma-iPS-acantholytic-eye-bronchogenic	0
C9-skeletal-diaphragm-tongue-throat-penis-heart-left	0
C90-neuroectodermal-peripheral-neuroepithelioma-neuroblastoma-carcinoid-parietal-putamen	0
C91-Fibroblast-Smooth-mesenchymal-Mesothelial-Small-Preadipocyte-Hair	0
C92-CD14CD16-CD14-Eosinophils-Basophils-Neutrophils-Macrophage-Whole	0
C93-chronic-acute-leukemia-acantholytic-medulloblastoma-testis-papillotubular	0
C94-smallcell-adrenal-lung-nonsmall-small-somatostatinoma-teratocarcinoma	0
C95-lung-aorta-trachea-penis-Alveolar-throat-endometrioid	0
C96-non-acute-tonsil-spleen-Burkitt-lymphoma-appendix	0
C97-small-smallcell-gastrointestinal-argyrophil-putamen-duodenum-brain	0
C98-CD8-Natural-Basophils-blood-CD4-Peripheral-Whole	0
C99-hairy-mycosis-submaxillary-salivary-cord-kidney-parotid	0

Repeat families with enriched expression in this sampleSummary:Ranked list of repeat family expression in this sample relative tothe median expression in the FANTOM5 collection is shown. Value is log10transformed. Analyst:NA link to dataset. data

TFBS(DNA)motifs over-represented in proximal region of promoters active in this sample

JASPAR motifsSummary:Association of JASPAR motif to the promoter expression in thissample. Pearson's correlation between the number of TFBSs estimated byusing the position-weight matrix for each promoter and its expression isexpressed as Z-score by taking the ones based on random position-weightmatrix, and the tail probability of the normal distribution correspondingto the Z-score is taken as the resulting P-value. Lower P-value indicatesmore (non-random) association of the motif to promoter expression Analyst: Michiel de Hoon link to dataset. data

library id: CNhs11920

Jaspar motif	Logo	P-value
MA0002.2	MA0002.2	0.00104
MA0003.1	MA0003.1	0.373
MA0004.1	MA0004.1	0.0159
MA0006.1	MA0006.1	0.516
MA0007.1	MA0007.1	0.883
MA0009.1	MA0009.1	0.696
MA0014.1	MA0014.1	0.312
MA0017.1	MA0017.1	0.314
MA0018.2	MA0018.2	7.20534e-5
MA0019.1	MA0019.1	0.986
MA0024.1	MA0024.1	0.507
MA0025.1	MA0025.1	0.0555
MA0027.1	MA0027.1	0.681
MA0028.1	MA0028.1	0.0777
MA0029.1	MA0029.1	0.735
MA0030.1	MA0030.1	0.587
MA0031.1	MA0031.1	0.518
MA0035.2	MA0035.2	0.437
MA0038.1	MA0038.1	0.11
MA0039.2	MA0039.2	0.148
MA0040.1	MA0040.1	0.347
MA0041.1	MA0041.1	0.879
MA0042.1	MA0042.1	0.919
MA0043.1	MA0043.1	0.0165
MA0046.1	MA0046.1	0.803
MA0047.2	MA0047.2	0.242
MA0048.1	MA0048.1	0.226
MA0050.1	MA0050.1	0.284
MA0051.1	MA0051.1	0.518
MA0052.1	MA0052.1	0.259
MA0055.1	MA0055.1	0.618
MA0057.1	MA0057.1	0.234
MA0058.1	MA0058.1	0.00655
MA0059.1	MA0059.1	0.0293
MA0060.1	MA0060.1	0.581
MA0061.1	MA0061.1	0.0548
MA0062.2	MA0062.2	0.281
MA0065.2	MA0065.2	0.13
MA0066.1	MA0066.1	0.749
MA0067.1	MA0067.1	0.0108
MA0068.1	MA0068.1	0.0817
MA0069.1	MA0069.1	0.138
MA0070.1	MA0070.1	0.283
MA0071.1	MA0071.1	0.952
MA0072.1	MA0072.1	0.837
MA0073.1	MA0073.1	0.251
MA0074.1	MA0074.1	0.471
MA0076.1	MA0076.1	0.133
MA0077.1	MA0077.1	0.38
MA0078.1	MA0078.1	0.303
MA0079.2	MA0079.2	0.417
MA0080.2	MA0080.2	2.77414e-9
MA0081.1	MA0081.1	0.01
MA0083.1	MA0083.1	0.00507
MA0084.1	MA0084.1	0.0939
MA0087.1	MA0087.1	0.775
MA0088.1	MA0088.1	0.53
MA0090.1	MA0090.1	0.00174
MA0091.1	MA0091.1	0.00754
MA0092.1	MA0092.1	0.871
MA0093.1	MA0093.1	0.0315
MA0099.2	MA0099.2	0.0106
MA0100.1	MA0100.1	0.464
MA0101.1	MA0101.1	0.0401
MA0102.2	MA0102.2	0.399
MA0103.1	MA0103.1	4.92025e-4
MA0104.2	MA0104.2	4.28323e-4
MA0105.1	MA0105.1	0.395
MA0106.1	MA0106.1	0.507
MA0107.1	MA0107.1	0.0237
MA0108.2	MA0108.2	0.13
MA0111.1	MA0111.1	0.244
MA0112.2	MA0112.2	0.561
MA0113.1	MA0113.1	0.954
MA0114.1	MA0114.1	0.448
MA0115.1	MA0115.1	0.199
MA0116.1	MA0116.1	0.411
MA0117.1	MA0117.1	0.408
MA0119.1	MA0119.1	0.693
MA0122.1	MA0122.1	0.25
MA0124.1	MA0124.1	0.944
MA0125.1	MA0125.1	0.177
MA0131.1	MA0131.1	0.524
MA0135.1	MA0135.1	0.812
MA0136.1	MA0136.1	4.94691e-10
MA0137.2	MA0137.2	0.602
MA0138.2	MA0138.2	0.131
MA0139.1	MA0139.1	0.517
MA0140.1	MA0140.1	0.689
MA0141.1	MA0141.1	0.273
MA0142.1	MA0142.1	0.0113
MA0143.1	MA0143.1	0.412
MA0144.1	MA0144.1	0.938
MA0145.1	MA0145.1	0.878
MA0146.1	MA0146.1	0.207
MA0147.1	MA0147.1	0.00204
MA0148.1	MA0148.1	0.319
MA0149.1	MA0149.1	0.27
MA0150.1	MA0150.1	0.0111
MA0152.1	MA0152.1	0.0366
MA0153.1	MA0153.1	0.885
MA0154.1	MA0154.1	0.873
MA0155.1	MA0155.1	0.894
MA0156.1	MA0156.1	8.92765e-5
MA0157.1	MA0157.1	0.259
MA0159.1	MA0159.1	0.543
MA0160.1	MA0160.1	0.0977
MA0162.1	MA0162.1	0.0852
MA0163.1	MA0163.1	0.0788
MA0164.1	MA0164.1	0.557
MA0258.1	MA0258.1	0.114
MA0259.1	MA0259.1	0.314

FANTOM5 phase1 novel unique motifsSummary:Association of the 169 novel and unique motifs discovered in FANTOM5 phase1 in this sample. Among the de-novo motifs discovered by DMF, HOMER,ChIPMunk, and ScanAll, only novel motifs are selected after comparison with known motif sets, and their clustering based on MACRO-APE resulted in169 novel and unique motifs. Their association to the promoter expression is evaluated in the same way to the JASPAR motif above Analyst: Michiel de Hoon link to dataset. data

library id: CNhs11920

Novel motif	Logo	P-value
1	1	0.243
10	10	0.828
100	100	0.65
101	101	0.367
102	102	0.194
103	103	0.673
104	104	0.889
105	105	0.537
106	106	0.0469
107	107	0.968
108	108	0.74
109	109	0.73
11	11	0.698
110	110	0.42
111	111	0.0976
112	112	0.783
113	113	0.189
114	114	0.112
115	115	0.628
116	116	0.764
117	117	0.827
118	118	0.521
119	119	0.427
12	12	0.35
120	120	0.588
121	121	0.983
122	122	0.0287
123	123	0.00781
124	124	0.976
125	125	0.132
126	126	0.688
127	127	0.943
128	128	0.24
129	129	0.194
13	13	0.452
130	130	0.0537
131	131	0.586
132	132	0.224
133	133	0.818
134	134	0.182
135	135	0.641
136	136	0.696
137	137	0.111
138	138	0.172
139	139	0.0403
14	14	0.18
140	140	0.367
141	141	0.226
142	142	0.826
143	143	0.482
144	144	0.824
145	145	0.272
146	146	0.381
147	147	0.173
148	148	0.771
149	149	0.223
15	15	0.0356
150	150	0.917
151	151	0.354
152	152	0.432
153	153	0.685
154	154	0.181
155	155	0.0521
156	156	0.597
157	157	0.413
158	158	0.0498
159	159	0.594
16	16	0.929
160	160	0.694
161	161	0.316
162	162	0.689
163	163	0.979
164	164	0.643
165	165	0.14
166	166	0.135
167	167	0.516
168	168	0.972
169	169	0.178
17	17	0.688
18	18	0.741
19	19	0.0322
2	2	0.248
20	20	0.431
21	21	0.378
22	22	0.308
23	23	0.757
24	24	0.601
25	25	0.327
26	26	0.272
27	27	0.641
28	28	0.222
29	29	0.881
3	3	0.739
30	30	0.225
31	31	0.85
32	32	5.77066e-6
33	33	1
34	34	0.896
35	35	0.435
36	36	0.166
37	37	0.696
38	38	0.171
39	39	0.478
4	4	0.0328
40	40	0.568
41	41	0.0401
42	42	0.479
43	43	0.314
44	44	0.581
45	45	0.938
46	46	0.605
47	47	0.437
48	48	0.429
49	49	0.113
5	5	0.292
50	50	0.417
51	51	0.952
52	52	0.5
53	53	0.29
54	54	0.923
55	55	0.768
56	56	0.667
57	57	0.365
58	58	0.237
59	59	0.638
6	6	0.355
60	60	0.127
61	61	0.954
62	62	0.405
63	63	0.693
64	64	0.445
65	65	0.535
66	66	0.531
67	67	0.728
68	68	0.821
69	69	0.754
7	7	0.167
70	70	0.0284
71	71	0.872
72	72	0.523
73	73	0.265
74	74	0.734
75	75	0.873
76	76	0.228
77	77	0.468
78	78	0.025
79	79	0.138
8	8	0.862
80	80	0.617
81	81	0.191
82	82	0.627
83	83	0.132
84	84	0.955
85	85	0.144
86	86	0.877
87	87	0.568
88	88	0.652
89	89	0.615
9	9	0.698
90	90	0.318
91	91	0.635
92	92	0.596
93	93	0.519
94	94	0.62
95	95	0.688
96	96	0.215
97	97	0.517
98	98	0.0524
99	99	0.0275

de novo motifs identified by HOMER in promoters active in this sampleSummary:The result of HOMER in this sample is shown. Analyst:NA library id: CNhs11920

FANTOM5 (FF) ontology

Direct parent terms

is_a relathionship
EFO:0002091 biological replicate
FF:0000183 human smooth muscle cell of prostate sample

Ancestor terms (non development)Summary:Connected ontology terms with is_a, part_of or located_in relationship Analyst: Hideya Kawaji link to source data data

CL: Cell type
0000000 (cell), 0000000 (cell)
0000003 (native cell)
0000548 (animal cell)
0002371 (somatic cell)
0000393 (electrically responsive cell)
0000183 (contractile cell)
0000187 (muscle cell)
0000192 (smooth muscle cell)
0000211 (electrically active cell)
0000255 (eukaryotic cell)
1000487 (smooth muscle cell of prostate)

UBERON: Anatomy
0000468 (multi-cellular organism)
0002367 (prostate gland)
0005156 (reproductive structure)
0004119 (endoderm-derived structure)
0000062 (organ)
0004120 (mesoderm-derived structure)
0000077 (mixed endoderm/mesoderm-derived structure)
0000061 (anatomical structure)
0000465 (material anatomical entity)
0000990 (reproductive system)
0000467 (anatomical system)
0001062 (anatomical entity)
0000480 (anatomical group)
0002530 (gland)
0010147 (male accessory sex gland)
0010317 (germ layer / neural crest derived structure)
0003937 (sex gland)
0005399 (male reproductive gland)
0003101 (male organism)
0000079 (male reproductive system)

FF: FANTOM5
0000102 (sample by type)
0000210 (human sample)
0000002 (in vivo cell sample)
0000101 (sample by species)
0000001 (sample)
0000167 (smooth muscle cell sample)
0000183 (human smooth muscle cell of prostate sample)

Ancestor terms (development)Summary:Connected ontology terms with develops_from, derives_from or preceded_by relationship Analyst: Hideya Kawaji link to source data data
CL:0000355 (multi-potent skeletal muscle stem cell)
CL:0000222 (mesodermal cell)
CL:0000514 (smooth muscle myoblast)

@@ Line 1: / Line 1: @@
 {{f5samples
-|ancestors_in_anatomy_facet=UBERON:0000468,UBERON:0000922,UBERON:0002367,UBERON:0001134,UBERON:0002100,UBERON:0000483,UBERON:0002530,UBERON:0000926,UBERON:0000479,UBERON:0001007,UBERON:0005156,UBERON:0000077,UBERON:0000062,UBERON:0004111,UBERON:0000475,UBERON:0004120,UBERON:0006554,UBERON:0004119,UBERON:0000061,UBERON:0000465,UBERON:0000480,UBERON:0000923,UBERON:0000990,UBERON:0002050,UBERON:0005153,UBERON:0005911,UBERON:0004921,UBERON:0000161,UBERON:0000162,UBERON:0005423,UBERON:0000477,UBERON:0000481,UBERON:0000467,UBERON:0001062,UBERON:0000119,UBERON:0000490,UBERON:0005291,UBERON:0003102,UBERON:0002036,UBERON:0002385,UBERON:0003929,UBERON:0000486,UBERON:0003104,UBERON:0000914,UBERON:0010147,UBERON:0005256,UBERON:0000925,UBERON:0006598,UBERON:0009846,UBERON:0004185,UBERON:0005157,UBERON:0003937,UBERON:0005399,UBERON:0001015,UBERON:0002532,UBERON:0003353,UBERON:0004902,UBERON:0001555,UBERON:0002329,UBERON:0002204,UBERON:0001008,UBERON:0003101,UBERON:0004122,UBERON:0001353,UBERON:0000163,UBERON:0000079,UBERON:0007026,UBERON:0000383,UBERON:0006866,UBERON:0003077,UBERON:0004290,UBERON:0009142,UBERON:0001046,UBERON:0000164,UBERON:0003064,UBERON:0006595,UBERON:0006603,UBERON:0003082,UBERON:0000931,UBERON:0003059,UBERON:0003820,UBERON:0007282,UBERON:0009618,UBERON:0007285,UBERON:0009847
+|DRA_sample_Accession=CAGE@SAMD00005720
-|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000055,CL:0000144,CL:0000723,CL:0000048,CL:0000548,CL:0000034,CL:0000012,CL:0000680,CL:0002321,CL:0002371,CL:0000393,CL:0000183,CL:0000187,CL:0000220,CL:0000004,CL:0000192,CL:0000211,CL:0000056,CL:0000255,CL:0000222,CL:1000487,CL:0000355,CL:0000514
+|DRA_sample_Accession_RNASeq=sRNA-Seq@SAMD00005720
+|accession_numbers=CAGE;DRX008495;DRR009367;DRZ000792;DRZ002177;DRZ012142;DRZ013527
+|accession_numbers_RNASeq=sRNA-Seq;DRX037005;DRR041371;DRZ007013
+|ancestors_in_anatomy_facet=UBERON:0000468,UBERON:0002367,UBERON:0005156,UBERON:0004119,UBERON:0000062,UBERON:0004120,UBERON:0000077,UBERON:0000061,UBERON:0000465,UBERON:0000990,UBERON:0000467,UBERON:0001062,UBERON:0000480,UBERON:0002530,UBERON:0010147,UBERON:0010317,UBERON:0003937,UBERON:0005399,UBERON:0003101,UBERON:0000079
+|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000548,CL:0002371,CL:0000393,CL:0000183,CL:0000187,CL:0000192,CL:0000211,CL:0000255,CL:1000487
 |ancestors_in_disease_facet=
+|ancestors_in_ff_facet=FF:0000102,FF:0000210,FF:0000002,FF:0000101,FF:0000001,FF:0000167,FF:0000183
 |comment=
 |created_by=
 |creation_date=
+|data_phase=2
+|datafreeze_phase=2
 |def=
 |expression_enrichment_score=chr6:134210243..134210257,+!p1@TCF21!1.88!74.26!TCF21;;chr16:86544113..86544145,+!p1@FOXF1!1.82!79.99!FOXF1;;chr4:81118647..81118666,+!p1@PRDM8!1.65!56.65!PRDM8;;chr10:28034739..28034756,-!p1@MKX!1.57!36.58!MKX;;chr7:27239703..27239715,-!p1@HOXA13!1.53!32.76!HOXA13;;chr11:46299199..46299233,+!p1@CREB3L1!1.49!148.78!CREB3L1;;chr5:92918919..92918942,+!p1@NR2F1!1.39!101.83!NR2F1;;chr15:57511609..57511651,+!p2@TCF12!1.38!38.63!TCF12;;chr1:170633348..170633399,+!p2@PRRX1!1.37!30.58!PRRX1;;chr7:27224842..27224872,-!p1@HOXA11!1.31!19.52!HOXA11;;chr11:46299539..46299620,+!p2@CREB3L1!1.26!28.80!CREB3L1;;chr5:134369905..134369972,-!p1@PITX1!1.25!25.66!PITX1;;chr7:27224795..27224840,-!p2@HOXA11!1.25!16.65!HOXA11;;chr1:170632285..170632309,+!p1@PRRX1!1.24!18.56!PRRX1;;chr5:92919100..92919135,+!p3@NR2F1!1.21!18.43!NR2F1;;chr8:99956662..99956684,+!p1@OSR2!1.15!20.20!OSR2;;chr9:77112244..77112262,+!p1@RORB!1.15!14.88!RORB;;chr3:128212033..128212051,-!p1@GATA2!1.13!12.42!GATA2;;chr17:1959369..1959388,+!p2@HIC1!1.12!32.49!HIC1;;chr2:176969228..176969260,+!p1@HOXD11!1.11!12.01!HOXD11;;chr3:138665937..138665968,-!p1@FOXL2!1.11!11.74!FOXL2;;chr5:134369879..134369898,-!p2@PITX1!1.10!11.60!PITX1;;chr10:63809106..63809127,+!p1@ARID5B!1.09!151.65!ARID5B;;chr13:72441315..72441454,-!p1@DACH1!1.06!21.29!DACH1;;chr2:19558373..19558392,-!p1@OSR1!1.05!28.26!OSR1;;chr9:132427883..132427951,+!p2@PRRX2!1.05!10.10!PRRX2;;chr15:96874012..96874042,+!p2@NR2F2!1.04!90.09!NR2F2;;chr5:92918956..92918969,+!p4@NR2F1!1.04!10.92!NR2F1;;chr15:96874145..96874166,+!p7@NR2F2!1.03!18.84!NR2F2;;chr9:132427972..132428056,+!p1@PRRX2!1.02!12.56!PRRX2;;chr1:170633058..170633084,+!p5@PRRX1!1.02!9.42!PRRX1;;chr19:45260775..45260838,+!p5@BCL3!0.99!11.60!BCL3;;chr1:170633262..170633285,+!p3@PRRX1!0.99!9.96!PRRX1;;chr5:92919375..92919438,+!p6@NR2F1!0.99!9.55!NR2F1;;chr3:128206762..128206781,-!p2@GATA2!0.97!52.83!GATA2;;chr1:170632959..170632987,+!p4@PRRX1!0.97!9.28!PRRX1;;chr15:96869255..96869291,+!p6@NR2F2!0.96!15.01!NR2F2;;chr2:239756739..239756755,+!p2@TWIST2!0.95!13.92!TWIST2;;chr19:13134772..13134822,+!p2@NFIX!0.95!11.88!NFIX;;chr5:92919068..92919082,+!p5@NR2F1!0.95!9.55!NR2F1;;chr3:138665760..138665772,-!p3@FOXL2!0.92!7.37!FOXL2;;chrY:21906594..21906622,-!p1@KDM5D!0.92!7.23!KDM5D;;chr17:59477233..59477263,+!p1@TBX2!0.91!22.93!TBX2;;chr15:96874927..96874938,+!p8@NR2F2!0.89!15.01!NR2F2;;chr15:96869114..96869160,+!p11@NR2F2!0.89!9.28!NR2F2;;chr13:72441074..72441172,-!p2@DACH1!0.89!6.69!DACH1;;chr5:321810..321877,+!p1@AHRR!0.88!21.70!AHRR;;chr10:63853436..63853442,+!p4@ARID5B!0.87!36.04!ARID5B;;chr15:42749722..42749739,-!p2@ZFP106!0.87!11.74!ZFP106;;chr15:96869165..96869183,+!p20@NR2F2!0.87!6.42!NR2F2;;chr10:63809013..63809041,+!p3@ARID5B!0.86!36.45!ARID5B;;chr6:34204921..34204939,+!p3@HMGA1!0.85!195.19!HMGA1;;chr3:25469724..25469773,+!p1@RARB!0.85!9.01!RARB;;chrY:2803415..2803468,+!p1@ZFY!0.84!5.87!ZFY;;chr15:67430381..67430396,+!p21@SMAD3!0.83!5.73!SMAD3;;chr2:66662281..66662308,+!p1@MEIS1!0.82!20.75!MEIS1;;chr15:96869222..96869251,+!p18@NR2F2!0.82!6.69!NR2F2;;chr15:67430351..67430366,+!p10@SMAD3!0.82!5.60!SMAD3;;chr14:61116183..61116208,-!p1@SIX1!0.81!21.98!SIX1;;chr11:65686802..65686818,+!p6@DRAP1!0.81!9.83!DRAP1;;chr3:25470156..25470227,+!p2@RARB!0.81!5.46!RARB;;chr10:63809090..63809097,+!p7@ARID5B!0.80!7.64!ARID5B;;chr7:28220198..28220269,-!p2@JAZF1!0.79!50.37!JAZF1;;chr3:69788576..69788648,+!p1@MITF!0.79!30.03!MITF;;chr2:176969179..176969226,+!p2@HOXD11!0.79!5.19!HOXD11;;chr1:54204818..54204870,-!p@chr1:54204818..54204870,-!0.78!5.46!GLIS1;;chr7:14029283..14029311,-!p1@ETV1!0.77!28.26!ETV1;;chr17:1958388..1958404,+!p1@HIC1!0.76!33.58!HIC1;;chr12:66218598..66218645,+!p2@HMGA2!0.76!24.16!HMGA2;;chr10:63809134..63809145,+!p6@ARID5B!0.76!11.88!ARID5B;;chr3:141150883..141150961,+!p6@ZBTB38!0.76!4.78!ZBTB38;;chr12:115121962..115121987,-!p1@TBX3!0.75!42.59!TBX3;;chr7:27196267..27196311,-!p1@HOXA7!0.75!4.64!HOXA7;;chr7:27239740..27239759,-!p2@HOXA13!0.75!4.64!HOXA13;;chr10:63661437..63661465,+!p2@ARID5B!0.74!95.69!ARID5B;;chr10:63853479..63853496,+!p21@ARID5B!0.74!4.50!ARID5B;;chr7:27192185..27192209,-!p1@HOXA3!0.74!4.50!HOXA3;;chr1:170632723..170632739,+!p8@PRRX1!0.74!4.50!PRRX1;;chr3:138665774..138665786,-!p5@FOXL2!0.74!4.50!FOXL2;;chr15:96873984..96873999,+!p3@NR2F2!0.73!35.76!NR2F2;;chr10:63809077..63809089,+!p5@ARID5B!0.73!10.10!ARID5B;;chr2:239756671..239756732,+!p1@TWIST2!0.72!15.15!TWIST2;;chr15:96869292..96869320,+!p15@NR2F2!0.72!6.42!NR2F2;;chr11:46299186..46299195,+!p3@CREB3L1!0.72!4.78!CREB3L1;;chr3:138665969..138665993,-!p2@FOXL2!0.72!4.23!FOXL2;;chr5:50679228..50679288,+!p1@ISL1!0.71!4.09!ISL1;;chr1:170632250..170632277,+!p7@PRRX1!0.71!4.09!PRRX1;;chr7:44143925..44143970,+!p1@AEBP1!0.70!101.69!AEBP1;;chr5:92918894..92918912,+!p2@NR2F1!0.70!14.61!NR2F1;;chr5:92920456..92920488,+!p9@NR2F1!0.70!4.78!NR2F1;;chr7:27205136..27205164,-!p1@HOXA9!0.70!3.96!HOXA9;;chr2:46524537..46524553,+!p1@EPAS1!0.69!440.08!EPAS1;;chr1:16452844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+|fantom_cat=http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000056;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000187;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000192;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000222;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:1000487;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0000079;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0000161;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0000990;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0001353;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0002367;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0002385;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0004122;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0005153;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0005157;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0005399;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0005911
+|ffid_belonging_in_development=CL:0000355,CL:0000222,CL:0000514
 |fonse_cell_line=
 |fonse_cell_line_closure=
@@ Line 35: / Line 44: @@
 |fonse_treatment_closure=
 |has_quality=
+|hg19bam=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/Smooth%2520Muscle%2520Cells%2520-%2520Prostate%252c%2520donor1.CNhs11920.11257-116F6.hg19.nobarcode.bam
+|hg19ctss=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/Smooth%2520Muscle%2520Cells%2520-%2520Prostate%252c%2520donor1.CNhs11920.11257-116F6.hg19.ctss.bed.gz
+|hg19fasta=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/Smooth%2520Muscle%2520Cells%2520-%2520Prostate%252c%2520donor1.CNhs11920.11257-116F6.hg19.nobarcode.rdna.fa.gz
+|hg38bam=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.primary_cell.hCAGE/Smooth%2520Muscle%2520Cells%2520-%2520Prostate%252c%2520donor1.CNhs11920.11257-116F6.hg38.nobarcode.bam
+|hg38ctss=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.primary_cell.hCAGE/Smooth%2520Muscle%2520Cells%2520-%2520Prostate%252c%2520donor1.CNhs11920.11257-116F6.hg38.nobarcode.ctss.bed.gz
 |id=FF:11257-116F6
 |is_a=EFO:0002091;;FF:0000183
 |is_obsolete=
+|library_id=CNhs11920
+|library_id_phase_based=2:CNhs11920
+|microRNAs=
+|microRNAs_nn=
+|microRNAs_nonnovel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer/#/human#cage;sample;11257
+|microRNAs_nonnovel_srna=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2016/vis_viewer/#/human#srna;sample;SRhi10002.GTCCGC.11257
+|microRNAs_novel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer_novel/#/human#cage;sample;11257
+|microRNAs_novel_srna=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2016/vis_viewer_novel/#/human#srna;sample;SRhi10002.GTCCGC.11257
 |name=Smooth Muscle Cells - Prostate, donor1
 |namespace=FANTOM5
@@ Line 43: / Line 65: @@
 |profile_cagescan=,,,
 |profile_hcage=CNhs11920,LSID842,release011,COMPLETED
-|profile_rnaseq=,,,
+|profile_rnaseq=
 |profile_srnaseq=SRhi10002,,,
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@@ Line 79: / Line 106: @@
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+|zenbu_report=https://fantom.gsc.riken.jp/zenbu/reports/#miRNA_expression_atlas_human;search_select_hide=table111:FF:11257-116F6;search_select_hide=table117:FF:11257-116F6
 }}

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FF:11257-116F6: Difference between revisions

From FANTOM5_SSTAR

Latest revision as of 16:28, 3 June 2020

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	Mozilla Cavendish skin modified by DaSch for the Web Community Wiki GitHub project page – Report a bug – Skin version: 2.6.0