FF:11510-119G7: Difference between revisions

Latest revision as of 18:05, 4 June 2020

Name:	Alveolar Epithelial Cells, donor1
Species:	Human (Homo sapiens)
Library ID:	CNhs11325
Sample type:	primary cells
Genomic View:	UCSC
RefEX:	Specific genes
FANTOM CAT:	1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25
CAGEd-oPOSSUM:	link
ZENBU report :	link

Additional information

Sample information

strain	NA
tissue	lung
dev stage	NA
sex	NA
age	NA
cell type	epithelial cell of lung, small airway
cell line	NA
company	Sciencell/3H
collaboration	FANTOM5 OSC CORE (contact: Al Forrest)
External link for information	[{{{sample_info_link}}} {{{sample_info_link}}}]

RNA information

lot number	lot:5020
catalog number	SC3205
sample type	total RNA
extraction protocol (Details)	OP-RNA-extraction-totalRNA-TRIzol-isopropanol-v1.0

CAGE Accession numbers

Method		Sample accession id
CAGE		SAMD00004797

Library accession numbers

Library id		Method		Exp. accession id		Run accession id
CNhs11325		CAGE		DRX008104		DRR008976

Accession ID Hg19

Library id		BAM		CTSS
CNhs11325		DRZ000401		DRZ001786

Accession ID Hg38

Library id		BAM		CTSS
CNhs11325		DRZ011751		DRZ013136

Download raw sequence, BAM & CTSS

Hg19

Fasta	BAM	CTSS
download	download	donwload

Hg38

BAM	CTSS
download	donwload

RNA-Seq Accession numbers

Method		Sample accession id
sRNA-Seq		SAMD00004797

Library accession numbers

Library id		Method		Exp. accession id		Run accession id
SRhi10015.CGATGT		sRNA-Seq		DRX037247		DRR041613

Accession ID Hg19

Library id		BAM		CTSS
SRhi10015.CGATGT		DRZ007255

Relative expression to median (log10)

Transcription factors with enriched expression in this sampleRanked list of transcription factor promoter expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.

Co-expression clusters with enriched expression in this sampleRanked list of co-expression cluster expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed. Analyst:NA link to dataset. data

Coexpression cluster	score
C0-CD14-Eosinophils-Neutrophils-Basophils-CD34-immature-Peripheral	0
C1-testis-epididymis-embryonic-medulla-pituitary-trachea-caudate	0
C10-occipital-temporal-parietal-brain-duodenum-Neurons-Neural	0
C100-rhabdomyosarcoma-gastric-pineal-Wilms-cervical-mesodermal-endometrial	0
C101-small-cerebellum-maxillary-colon-parietal-epididymis-merkel	0
C102-neuroblastoma-testicular-pituitary-carcinosarcoma-rectum-acantholytic-iPS	0
C103-CD4-CD8-Natural-Peripheral-Whole-Neutrophils-Basophils	0
C104-Mast-Basophils-immature-CD14-CD34-eye-Natural	0
C105-heart-skeletal-occipital-hippocampus-acute-Sebocyte-penis	-0.117
C106-Hep2-epitheloid-placenta-cervical-rectal-anaplastic-glassy	0
C107-Neutrophils-CD14-Eosinophils-Monocytederived-Whole-Peripheral-blood	0
C108-breast-hepatoblastoma-MCF7-parotid-salivary-submaxillary-prostate	0
C109-Reticulocytes-non-acute-Hodgkin-Burkitt-retinoblastoma-lymphoma	0.053
C11-cerebellum-medulla-pons-parietal-occipital-middle-medial	0
C110-leukemia-chronic-Eosinophils-acute-Whole-CD34-Lymphatic	0
C111-medulla-lung-trachea-testis-caudate-epididymis-throat	0
C112-gastric-pancreas-temporal-duodenum-small-extraskeletal-adrenal	0
C113-thyroid-throat-lung-lymph-small-colon-trachea	0
C114-teratocarcinoma-medulloblastoma-carcinosarcoma-iPS-anaplastic-acute-neuroblastoma	0
C115-pituitary-Neural-caudate-putamen-amygdala-medulla-hippocampus	0
C116-myeloma-xeroderma-tonsil-CD19-spleen-lymph-trachea	0
C117-serous-clear-kidney-neuroectodermal-mesothelioma-endometrial-Intestinal	0
C118-cerebellum-parietal-occipital-medial-middle-frontal-insula	0
C119-CD4-CD8-Natural-Neutrophils-CD14-Peripheral-CD19	0
C12-Mast-Basophils-immature-chorionic-mature-CD14-Eosinophils	0
C120-immature-salivary-tongue-skin-cervical-CD14-CD34	0
C121-NK-Natural-CD8-CD4-anaplastic-chronic-B	0
C122-chronic-Reticulocytes-skeletal-leukemia-acute-colon-Tracheal	0
C123-CD19-Natural-CD8-CD4-CD14-Peripheral-Basophils	0
C124-small-temporal-duodenum-colon-gall-signet-Hepatocyte	0
C125-mucinous-alveolar-mesothelioma-Smooth-lung-CD14-Nucleus	0
C126-gastrointestinal-argyrophil-smallcell-merkel-bile-insula-brain	0
C127-maxillary-small-hepatoblastoma-hepatocellular-alveolar-colon-argyrophil	0
C128-testicular-choriocarcinoma-H9-teratocarcinoma-pancreatic-iPS-HES3GFP	0
C129-liver-Hepatocyte-colon-duodenum-temporal-testicular-small	0
C13-Neutrophils-Eosinophils-CD14-Monocytederived-Whole-Peripheral-CD4	0
C130-iPS-HES3GFP-H9-teratocarcinoma-testicular-colon-Alveolar	0
C131-lung-trachea-Alveolar-thyroid-umbilical-throat-skin	0
C132-acute-small-Dendritic-Macrophage-CD14-Neutrophils-Monocytederived	0
C133-signet-gall-small-kidney-colon-ductal-adenocarcinoma	0
C134-skeletal-diaphragm-tongue-throat-Skeletal-skin-penis	0
C135-neuroblastoma-retinoblastoma-carcinoid-choriocarcinoma-testicular-acute-rectum	0
C136-Wilms-extraskeletal-anaplastic-rhabdomyosarcoma-cholangiocellular-nonsmall-neuroectodermal	0
C137-large-ductal-melanoma-cervical-Endothelial-Smooth-chronic	0
C138-diffuse-Burkitt-lymphangiectasia-lymphoma-acute-CD19-pineal	0
C139-astrocytoma-skin-salivary-gall-serous-Mallassezderived-renal	0
C14-Whole-blood-Reticulocytes-liver-Neutrophils-Eosinophils-spleen	0
C140-Renal-Endothelial-Hepatic-Lymphatic-heart-lung-spleen	0
C141-Hodgkin-acute-thymus-chronic-vein-CD4-B	0
C142-Preadipocyte-Fibroblast-hepatic-Ewing-Adipocyte-Olfactory-Hair	0.174
C143-Monocytederived-CD14-Macrophage-Dendritic-Basophils-CD14CD16-Osteoblast	0
C144-CD4-tonsil-NK-appendix-CD8-splenic-mycosis	0
C145-neuroblastoma-peripheral-neuroectodermal-neuroepithelioma-carcinoid-adult-extraskeletal	0
C146-lymphangiectasia-lymphoma-gall-lymph-tonsil-gastric-transitionalcell	0
C147-Neutrophils-Eosinophils-CD4-CD14-CD8-Natural-Peripheral	0
C148-kidney-small-epididymis-pancreas-serous-duodenum-temporal	0
C149-occipital-medial-brain-amygdala-parietal-cerebral-cerebellum	0
C15-anaplastic-small-skeletal-neuroblastoma-parietal-temporal-tongue	0
C150-merkel-carcinoid-nonsmall-gastrointestinal-argyrophil-pineal-small	0
C151-CD14-Natural-Basophils-CD8-Eosinophils-CD4-Mast	0
C152-peripheral-neuroectodermal-neuroepithelioma-neuroblastoma-testicular-carcinoid-lung	0
C153-rhabdomyosarcoma-liposarcoma-pancreatic-somatostatinoma-Reticulocytes-lymphoma-testicular	0
C154-adenocarcinoma-Mesenchymal-Cardiac-small-sacrococcigeal-Smooth-Prostate	0
C155-pituitary-placenta-nonsmall-cervical-smallcell-choriocarcinoma-epitheloid	0
C156-plasma-splenic-hereditary-B-large-xeroderma-b	0
C157-testicular-H9-testis-iPS-teratocarcinoma-colon-trachea	0
C158-adrenal-gastric-temporal-parietal-duodenum-caudate-putamen	0
C159-choriocarcinoma-pancreatic-placenta-chorionic-testicular-bronchioalveolar-seminal	0
C16-medial-amygdala-occipital-parietal-olfactory-putamen-brain	0
C160-medulla-Hepatocyte-retina-corpus-liver-pineal-cerebral	0
C161-mesothelioma-Mesothelial-acute-mesenchymal-extraskeletal-renal-placenta	0
C162-spinal-locus-medulla-substantia-thalamus-globus-diencephalon	0
C163-Skeletal-skeletal-Pericytes-Hepatic-rhabdomyosarcoma-throat-mesenchymal	0
C164-signet-corpus-optic-mucinous-substantia-salivary-choriocarcinoma	0
C165-epithelioid-Adipocyte-mesothelioma-myxofibrosarcoma-lung-gastric-Mesothelial	0
C166-Macrophage-Monocytederived-Dendritic-adipose-lymph-CD14-lung	0
C167-Basophils-Mast-Eosinophils-Neutrophils-Peripheral-Whole-CD4	0
C168-Mast-CD14-immature-Basophils-Eosinophils-CD34-Peripheral	0
C169-hereditary-adult-gall-lymphangiectasia-chronic-b-choriocarcinoma	0
C17-Mast-CD14-Monocytederived-Lymphatic-Smooth-mesenchymal-Macrophage	0
C170-epitheloid-cervical-Hep2-keratoacanthoma-adult-neuroblastoma-signet	0
C171-merkel-neuroblastoma-pineal-retinoblastoma-carcinoid-small-eye	0
C172-chorionic-skeletal-tongue-amniotic-liver-gastrointestinal-Pericytes	0.0954
C173-Adipocyte-mature-skin-left-Hepatocyte-Osteoblast-adipose	0
C174-CD14-Neutrophils-Smooth-mesothelioma-embryonic-Monocytederived-Eosinophils	0
C175-Eosinophils-Neutrophils-CD4-Basophils-CD19-CD8-Natural	-0.0946
C176-Eosinophils-Neutrophils-Mast-CD14-CD4-Basophils-CD19	-0.412
C177-melanoma-Melanocyte-mesenchymal-retina-Mallassezderived-Gingival-squamous	0
C178-spleen-liver-Hepatocyte-b-lymph-vein-thymus	0
C179-CD19-Peripheral-lymphoma-blood-lymph-spleen-tonsil	0
C18-CD4-CD8-thymus-Whole-Peripheral-Natural-blood	0
C180-skeletal-heart-Hepatocyte-acute-occipital-hippocampus-middle	-0.148
C181-liposarcoma-somatostatinoma-neuroblastoma-mesothelioma-nonsmall-small-Alveolar	0
C182-renal-mature-mesothelioma-lung-Mammary-Adipocyte-acute	0
C183-acute-non-CD34-diffuse-CD133-myeloma-Burkitt	0
C184-somatostatinoma-smallcell-nonsmall-small-gastrointestinal-pineal-thyroid	0
C185-small-adrenal-gastric-Mesenchymal-acute-HES3GFP-testis	0
C186-squamous-papillotubular-large-Tracheal-oral-Small-epidermoid	0
C187-migratory-immature-Dendritic-CD19-CD14-Monocytederived-Macrophage	0
C188-left-heart-tongue-skeletal-Skeletal-diaphragm-throat	0
C189-b-splenic-tonsil-CD19-lymph-appendix-spleen	0
C19-embryonic-testis-cord-chronic-CD14-NK-mesothelioma	0
C190-colon-small-rectum-duodenum-appendix-temporal-oral	0
C191-leiomyoblastoma-Mast-parietal-acute-bone-neuroepithelioma-embryonic	0
C192-Neutrophils-CD14-Peripheral-Eosinophils-CD8-Natural-CD4	0
C193-Mesenchymal-Adipocyte-mature-Cardiac-heart-CD14CD16-CD14	0
C194-MCF7-breast-prostate-Intestinal-diffuse-Wilms-Alveolar	0
C195-Small-Gingival-Bronchial-Smooth-mesenchymal-Urothelial-Tracheal	0
C196-testicular-iPS-H9-teratocarcinoma-HES3GFP-choriocarcinoma-endometrial	0
C197-tongue-esophagus-tonsil-salivary-cervix-nasal-Gingival	0
C198-Mesenchymal-Hair-Hepatic-Fibroblast-Smooth-tenocyte-Pericytes	0
C199-glioblastoma-B-osteosarcoma-Fibroblast-heart-rhabdomyosarcoma-myxofibrosarcoma	0
C2-Eosinophils-Neutrophils-CD14-Whole-Basophils-Peripheral-Mast	0
C20-heart-left-skeletal-diaphragm-tongue-umbilical-throat	0
C200-seminal-Cardiac-Smooth-Hair-submaxillary-Neutrophils-mixed	0.025
C201-colon-small-adenocarcinoma-duodenum-temporal-signet-gall	0
C202-salivary-skin-penis-tongue-uterus-cervical-immature	0
C203-acute-NK-chronic-CD133-lymphoma-immature-Dendritic	0
C204-Smooth-nasal-CD4-CD19-CD8-CD14-CD34	0
C205-mycosis-cord-hairy-xeroderma-CD4-B-b	0
C206-melanoma-somatostatinoma-nonsmall-small-neuroblastoma-smallcell-pituitary	0
C207-Corneal-Keratinocyte-Esophageal-Mammary-Bronchial-Urothelial-Sebocyte	0
C208-skin-amniotic-papillotubular-salivary-umbilical-Alveolar-serous	0
C209-acute-myelodysplastic-CD34-granulocyte-CD133-liver-spleen	0
C21-cord-mycosis-hairy-xeroderma-adult-CD4-anaplastic	0
C210-Burkitt-lymphoma-appendix-acute-diffuse-CD19-tonsil	0
C211-small-Hepatocyte-liver-colon-temporal-duodenum-kidney	0
C212-chronic-acute-Whole-Reticulocytes-leukemia-blood-CD34	0
C213-CD14-Natural-CD8-CD4-Basophils-Eosinophils-Peripheral	0
C214-Neurons-Neural-duodenum-temporal-occipital-parietal-brain	0
C215-chronic-acute-peripheral-Hepatocyte-osteosarcoma-NK-immature	0
C216-osteosarcoma-Smooth-Mesenchymal-large-neuroectodermal-acute-CD34	0
C217-carcinoid-neuroectodermal-mature-mesodermal-colon-acute-occipital	0
C218-tonsil-lymph-CD19-spleen-colon-appendix-salivary	0
C219-nasal-Basophils-amniotic-Melanocyte-CD14-Osteoblast-duodenum	0
C22-CD4-CD8-Natural-Basophils-CD14-Peripheral-CD19	0
C220-Adipocyte-mature-left-breast-skin-liver-adipose	0
C221-alveolar-Osteoblast-Myoblast-mesenchymal-liposarcoma-Smooth-hepatocellular	0
C222-Melanocyte-Tracheal-Neutrophils-seminal-Smooth-Hair-Chondrocyte	-0.00391
C223-Chondrocyte-basal-renal-Fibroblast-Smooth-spindle-Synoviocyte	0.0954
C224-clear-serous-pleomorphic-choriocarcinoma-mesothelioma-amniotic-renal	0
C225-ductal-alveolar-giant-prostate-salivary-squamous-Tracheal	0
C226-Corneal-Keratinocyte-Esophageal-Urothelial-Mammary-Bronchial-Tracheal	0.507
C227-chorionic-amniotic-Mesenchymal-Placental-gastric-diaphragm-tongue	0.0954
C228-colon-Intestinal-Prostate-hepatoblastoma-hepatocellular-testis-adult	0
C229-Mesenchymal-CD4-Melanocyte-acute-skeletal-left-heart	0
C23-CD4-CD8-Natural-Peripheral-Basophils-CD19-CD14	0
C230-aorta-normal-heart-penis-osteosarcoma-basal-lung	0
C231-Mesothelial-mesenchymal-mesothelioma-Fibroblast-Preadipocyte-leiomyoma-mycosis	0
C232-teratocarcinoma-HES3GFP-H9-iPS-testicular-neuroblastoma-cerebellum	0
C233-uterus-cervix-ovary-epididymis-colon-rectum-MCF7	0
C234-oral-epidermoid-malignant-cervical-ductal-lung-keratoacanthoma	0
C235-Intestinal-Prostate-liver-colon-small-kidney-pancreas	0
C236-CD14-Neutrophils-Monocytederived-renal-Eosinophils-testis-mesothelioma	0
C237-acute-breast-testicular-hepatoblastoma-chronic-argyrophil-Bronchial	0
C238-stomach-gall-breast-duodenum-temporal-MCF7-smallcell	0
C239-CD4-lymphangiectasia-CD8-NK-mycosis-Renal-hairy	0
C24-pineal-eye-retina-retinoblastoma-medulloblastoma-small-cerebral	0
C240-Adipocyte-Preadipocyte-Osteoblast-Chondrocyte-tenocyte-Synoviocyte-mesenchymal	0
C241-Reticulocytes-chronic-Tracheal-Hodgkin-Endothelial-Hair-thymus	0.433
C242-acute-Chondrocyte-myelodysplastic-granulocyte-biphenotypic-Fibroblast-stomach	0
C243-Chondrocyte-trachea-Synoviocyte-mesodermal-renal-Fibroblast-Ewing	0
C244-CD14-Monocytederived-Hepatocyte-heart-Neutrophils-acute-Macrophage	0
C245-prostate-penis-salivary-esophagus-kidney-Neutrophils-Pancreatic	0
C246-Neutrophils-Eosinophils-Whole-CD14-CD14CD16-Basophils-migratory	0
C247-pons-locus-medulla-spinal-paracentral-medial-occipital	0
C248-iPS-Aortic-Hep2-amygdala-acute-medial-Myoblast	0
C249-nonsmall-small-smallcell-occipital-somatostatinoma-maxillary-medial	0
C25-small-colon-temporal-duodenum-liver-Hepatocyte-gall	0
C250-Mast-Neutrophils-CD14-Eosinophils-CD8-Peripheral-CD4	0
C251-gall-tonsil-trachea-CD14-salivary-throat-tongue	0
C252-hepatic-Olfactory-sacrococcigeal-leiomyoma-normal-Synoviocyte-glioblastoma	0
C253-spleen-rhabdomyosarcoma-Hepatocyte-small-uterus-liver-rectum	0
C254-prostate-rhabdomyosarcoma-seminal-Fibroblast-transitionalcell-Smooth-Iris	0
C255-Wilms-leiomyoblastoma-kidney-adrenal-MCF7-epithelioid-Mast	0
C256-occipital-caudate-amygdala-medial-thalamus-hippocampus-medulla	0
C257-pineal-insula-frontal-occipital-temporal-medial-paracentral	0
C258-hepatoblastoma-hepatocellular-signet-colon-Intestinal-Prostate-gastric	0
C259-Preadipocyte-Adipocyte-Fibroblast-Chondrocyte-tenocyte-normal-Ewing	0
C26-Eosinophils-Neutrophils-CD14-CD14CD16-Basophils-Monocytederived-Whole	0
C260-acute-chronic-Natural-NK-Basophils-biphenotypic-blood	0
C261-locus-medial-parietal-pons-diencephalon-olfactory-spinal	0
C262-breast-MCF7-skeletal-Reticulocytes-mucinous-hepatoblastoma-Wilms	0
C263-cervical-keratoacanthoma-tongue-skin-esophagus-throat-tonsil	0
C264-giant-keratoacanthoma-colon-fibrosarcoma-HES3GFP-Hep2-acute	0
C265-CD4-Eosinophils-CD14-Natural-CD19-Basophils-CD8	-0.0116
C266-acute-chronic-leukemia-small-choriocarcinoma-hepatoma-Mast	0
C267-pancreatic-placenta-choriocarcinoma-testicular-teratocarcinoma-chorionic-clear	0
C268-Mallassezderived-Urothelial-Gingival-Small-Bronchial-Tracheal-Prostate	0.0954
C269-Basophils-Mast-Eosinophils-mature-CD14-chorionic-CD4	0
C27-pancreas-temporal-duodenum-salivary-ductus-umbilical-lung	0
C270-CD4-Fibroblast-acute-iPS-Aortic-CD34-Smooth	0
C271-pineal-spinal-locus-globus-medulla-thalamus-cerebellum	0
C272-CD19-CD4-CD8-Whole-Peripheral-lymph-tonsil	0
C273-Neutrophils-CD14-Eosinophils-Monocytederived-CD4-Natural-Mast	0
C274-CD14-Mast-immature-Basophils-mature-vagina-Hepatocyte	0
C275-pons-medulla-cerebellum-locus-thalamus-diencephalon-spinal	0
C276-mesothelioma-kidney-renal-small-clear-cerebellum-Renal	0
C277-mesothelioma-epithelioid-thyroid-extraskeletal-alveolar-glioblastoma-adenocarcinoma	0
C278-amygdala-hippocampus-insula-medial-putamen-temporal-olfactory	0
C279-parietal-cerebellum-occipital-temporal-middle-duodenum-medial	0
C28-thymus-acute-vein-Hodgkin-chronic-throat-Dendritic	0
C280-Mast-Natural-CD19-CD8-Eosinophils-CD34-CD4	0
C281-Hodgkin-Reticulocytes-chronic-NK-acute-retinoblastoma-small	0.461
C282-acute-B-tonsil-CD19-submaxillary-lymph-throat	0
C283-tenocyte-Chondrocyte-mesenchymal-Macrophage-pleomorphic-Synoviocyte-cholangiocellular	0
C284-parietal-occipital-medial-temporal-olfactory-locus-hippocampus	0
C285-cervical-Hep2-small-colon-temporal-duodenum-bronchogenic	0
C286-cerebellum-occipital-optic-parietal-globus-caudate-medial	0
C287-Hepatocyte-Chondrocyte-Adipocyte-Synoviocyte-liver-tenocyte-mesenchymal	0
C288-Chondrocyte-Renal-Pericytes-Fibroblast-aorta-Smooth-Meningeal	0
C289-chorionic-skeletal-heart-Mast-amniotic-granulosa-left	0
C29-mature-adipose-Adipocyte-breast-Lymphatic-vein-heart	0
C290-Eosinophils-CD14-Basophils-Mast-CD4-CD8-immature	0
C291-spinal-substantia-retina-medulla-tongue-skeletal-trachea	0
C292-Mesenchymal-skin-umbilical-Adipocyte-mesenchymal-Chondrocyte-skeletal	0
C293-CD14-CD14CD16-Basophils-Peripheral-immature-Eosinophils-CD34	0
C294-CD14-Macrophage-Monocytederived-CD14CD16-Neutrophils-Basophils-Peripheral	0
C295-Fibroblast-Smooth-Myoblast-Chondrocyte-hepatic-Synoviocyte-Preadipocyte	0.311
C296-gall-small-mesothelioma-acute-bronchioalveolar-epidermoid-mixed	0
C297-Eosinophils-CD4-Basophils-Natural-Neutrophils-CD8-Peripheral	0
C298-small-optic-substantia-thalamus-diencephalon-globus-occipital	0
C299-CD14CD16-Eosinophils-Neutrophils-CD14-Whole-Basophils-blood	0
C3-occipital-temporal-insula-medial-postcentral-frontal-amygdala	0
C30-thyroid-throat-mesothelioma-mucinous-trachea-chorionic-mesenchymal	0
C300-CD4-CD8-NK-Natural-blood-mycosis-Basophils	0
C301-Smooth-mesenchymal-Endothelial-Hepatic-basal-hepatic-chorionic	0.754
C302-acute-peripheral-Neutrophils-NK-myelodysplastic-CD34-carcinoid	0
C303-CD14-Basophils-Peripheral-Eosinophils-CD14CD16-Neutrophils-Whole	0
C305-heart-skeletal-smooth-left-bladder-penis-esophagus	0
C31-skeletal-tongue-diaphragm-throat-penis-skin-trachea	0
C32-middle-occipital-parietal-hippocampus-amygdala-medial-olfactory	0
C33-Reticulocytes-liver-Whole-blood-chronic-acute-spleen	0
C34-placenta-chorionic-choriocarcinoma-mesothelioma-Wilms-Smooth-bile	0
C35-caudate-putamen-diencephalon-nucleus-globus-thalamus-insula	0
C36-B-b-splenic-plasma-xeroderma-adrenal-Burkitt	0
C37-salivary-submaxillary-parotid-seminal-tongue-ductus-trachea	0
C38-extraskeletal-rhabdomyosarcoma-adrenal-rectal-mesothelioma-lung-Wilms	0
C39-epididymis-ductus-seminal-testis-acute-thyroid-CD133	0
C4-optic-corpus-substantia-medulla-spinal-thalamus-globus	0
C40-eye-retina-Lens-pineal-tongue-retinoblastoma-small	0
C41-retina-eye-medulla-Retinal-medulloblastoma-kidney-pineal	0
C42-small-lung-maxillary-pharyngeal-Mesenchymal-Wilms-colon	0
C43-ductus-seminal-duodenum-temporal-gall-prostate-bladder	0
C44-Dendritic-CD19-CD133-granulocyte-acute-thymus-immature	0
C45-testicular-choriocarcinoma-H9-teratocarcinoma-Wilms-pancreatic-iPS	0
C46-acute-Hodgkin-thymus-CD8-chronic-CD4-merkel	0
C47-CD19-Burkitt-acute-xeroderma-tonsil-lymphoma-appendix	0
C48-smooth-bladder-esophagus-colon-penis-aorta-uterus	0
C49-H9-iPS-testicular-HES3GFP-teratocarcinoma-hepatoblastoma-choriocarcinoma	0
C5-Hepatocyte-liver-hepatocellular-Intestinal-kidney-small-pancreas	0
C50-chorionic-placenta-amniotic-migratory-smallcell-chronic-choriocarcinoma	0
C51-kidney-mesothelioma-renal-signet-gall-lung-pancreas	0
C52-adult-NK-chronic-cord-testis-embryonic-myeloma	0
C53-medulloblastoma-pineal-retinoblastoma-small-retina-eye-pituitary	0
C54-Dendritic-Macrophage-Monocytederived-CD14-leiomyoma-adipose-immature	0
C55-hepatocellular-Intestinal-liver-Prostate-fibrosarcoma-Hepatocyte-hepatoblastoma	0
C56-heart-left-umbilical-skeletal-penis-diaphragm-tongue	0
C57-Neutrophils-Eosinophils-Whole-CD4-CD8-CD19-Natural	0
C58-Melanocyte-melanoma-retina-Retinal-eye-migratory-H9	0
C59-Smooth-Fibroblast-Mesenchymal-tenocyte-Ewing-skin-hepatic	0
C6-CD14-Eosinophils-Basophils-Peripheral-CD34-Natural-immature	0
C60-esophagus-tonsil-throat-tongue-uterus-cervix-cervical	0
C61-migratory-Dendritic-immature-Macrophage-xeroderma-cord-b	0
C62-Burkitt-tonsil-CD19-submaxillary-spleen-salivary-lymph	0
C63-neuroectodermal-neuroblastoma-carcinoid-peripheral-chronic-neuroepithelioma-acute	0
C64-Mast-chronic-acute-immature-chorionic-Basophils-Dendritic	0
C65-CD14-Eosinophils-Monocytederived-Basophils-immature-Macrophage-Neutrophils	0
C66-cerebellum-middle-occipital-parietal-medial-amygdala-hippocampus	0
C67-CD14-Monocytederived-Macrophage-dura-Dendritic-spleen-lung	0
C68-amniotic-chorionic-Placental-salivary-placenta-tongue-mesothelioma	0
C69-anaplastic-CD14-cord-hairy-mycosis-adult-NK	0
C7-CD14-Eosinophils-Neutrophils-Smooth-Basophils-Macrophage-Mast	0
C70-parotid-submaxillary-salivary-throat-trachea-aorta-tongue	0
C71-Monocytederived-Macrophage-CD14-Dendritic-Osteoblast-leiomyoma-Prostate	0
C72-skeletal-tongue-throat-heart-diaphragm-penis-left	0
C73-pineal-eye-retina-caudate-cerebellum-left-parietal	0
C74-splenic-B-b-plasma-xeroderma-lymphoma-hairy	0
C75-Eosinophils-Natural-CD8-Basophils-CD14-CD4-Peripheral	0
C76-argyrophil-gastrointestinal-temporal-duodenum-neuroblastoma-merkel-smallcell	0
C77-Saos2-osteosarcoma-Neutrophils-Natural-Chondrocyte-Basophils-CD8	0
C78-lymphoma-plasma-tonsil-appendix-lymph-seminal-trachea	0
C79-chorionic-Chondrocyte-Cardiac-Smooth-Fibroblast-Preadipocyte-Mesenchymal	0.0954
C8-Natural-CD8-Basophils-CD4-CD14-Peripheral-CD34	0
C80-immature-migratory-CD14-Dendritic-splenic-cord-Mast	0
C81-trachea-salivary-throat-aorta-eye-submaxillary-parotid	0
C82-Basophils-CD14-Eosinophils-Natural-Peripheral-immature-CD34	0
C83-choriocarcinoma-pancreatic-placenta-chorionic-HES3GFP-testicular-amniotic	0
C84-choriocarcinoma-pancreatic-Wilms-Mallassezderived-thymus-salivary-colon	0
C85-neuroblastoma-carcinoid-retinoblastoma-small-pineal-rhabdomyosarcoma-medulloblastoma	0
C86-colon-carcinoid-small-neuroectodermal-giant-large-neuroepithelioma	0
C87-retinoblastoma-left-nonsmall-heart-small-diaphragm-bronchogenic	0
C88-Melanocyte-melanoma-Macrophage-Mesenchymal-migratory-Dendritic-Monocytederived	0
C89-small-retinoblastoma-medulloblastoma-iPS-acantholytic-eye-bronchogenic	0
C9-skeletal-diaphragm-tongue-throat-penis-heart-left	0
C90-neuroectodermal-peripheral-neuroepithelioma-neuroblastoma-carcinoid-parietal-putamen	0
C91-Fibroblast-Smooth-mesenchymal-Mesothelial-Small-Preadipocyte-Hair	0
C92-CD14CD16-CD14-Eosinophils-Basophils-Neutrophils-Macrophage-Whole	0
C93-chronic-acute-leukemia-acantholytic-medulloblastoma-testis-papillotubular	0
C94-smallcell-adrenal-lung-nonsmall-small-somatostatinoma-teratocarcinoma	0
C95-lung-aorta-trachea-penis-Alveolar-throat-endometrioid	0
C96-non-acute-tonsil-spleen-Burkitt-lymphoma-appendix	0
C97-small-smallcell-gastrointestinal-argyrophil-putamen-duodenum-brain	0
C98-CD8-Natural-Basophils-blood-CD4-Peripheral-Whole	0
C99-hairy-mycosis-submaxillary-salivary-cord-kidney-parotid	0

Repeat families with enriched expression in this sampleSummary:Ranked list of repeat family expression in this sample relative tothe median expression in the FANTOM5 collection is shown. Value is log10transformed. Analyst:NA link to dataset. data

TFBS(DNA)motifs over-represented in proximal region of promoters active in this sample

JASPAR motifsSummary:Association of JASPAR motif to the promoter expression in thissample. Pearson's correlation between the number of TFBSs estimated byusing the position-weight matrix for each promoter and its expression isexpressed as Z-score by taking the ones based on random position-weightmatrix, and the tail probability of the normal distribution correspondingto the Z-score is taken as the resulting P-value. Lower P-value indicatesmore (non-random) association of the motif to promoter expression Analyst: Michiel de Hoon link to dataset. data

library id: CNhs11325

Jaspar motif	Logo	P-value
MA0002.2	MA0002.2	0.848
MA0003.1	MA0003.1	0.372
MA0004.1	MA0004.1	0.745
MA0006.1	MA0006.1	0.184
MA0007.1	MA0007.1	0.029
MA0009.1	MA0009.1	0.68
MA0014.1	MA0014.1	0.79
MA0017.1	MA0017.1	0.0876
MA0018.2	MA0018.2	0.181
MA0019.1	MA0019.1	0.29
MA0024.1	MA0024.1	0.791
MA0025.1	MA0025.1	0.605
MA0027.1	MA0027.1	0.536
MA0028.1	MA0028.1	0.309
MA0029.1	MA0029.1	0.0839
MA0030.1	MA0030.1	0.319
MA0031.1	MA0031.1	0.0617
MA0035.2	MA0035.2	0.00345
MA0038.1	MA0038.1	0.259
MA0039.2	MA0039.2	0.0923
MA0040.1	MA0040.1	0.458
MA0041.1	MA0041.1	0.554
MA0042.1	MA0042.1	0.503
MA0043.1	MA0043.1	0.0269
MA0046.1	MA0046.1	0.00335
MA0047.2	MA0047.2	0.375
MA0048.1	MA0048.1	0.851
MA0050.1	MA0050.1	1.98854e-10
MA0051.1	MA0051.1	7.32045e-6
MA0052.1	MA0052.1	0.329
MA0055.1	MA0055.1	0.072
MA0057.1	MA0057.1	0.149
MA0058.1	MA0058.1	0.362
MA0059.1	MA0059.1	0.549
MA0060.1	MA0060.1	0.00975
MA0061.1	MA0061.1	0.802
MA0062.2	MA0062.2	0.0107
MA0065.2	MA0065.2	0.0102
MA0066.1	MA0066.1	0.354
MA0067.1	MA0067.1	0.00441
MA0068.1	MA0068.1	0.764
MA0069.1	MA0069.1	0.805
MA0070.1	MA0070.1	0.0609
MA0071.1	MA0071.1	0.262
MA0072.1	MA0072.1	0.799
MA0073.1	MA0073.1	0.864
MA0074.1	MA0074.1	0.679
MA0076.1	MA0076.1	0.0689
MA0077.1	MA0077.1	0.229
MA0078.1	MA0078.1	0.408
MA0079.2	MA0079.2	0.946
MA0080.2	MA0080.2	5.57889e-4
MA0081.1	MA0081.1	0.0297
MA0083.1	MA0083.1	1.14006e-9
MA0084.1	MA0084.1	0.0734
MA0087.1	MA0087.1	0.729
MA0088.1	MA0088.1	0.608
MA0090.1	MA0090.1	7.56676e-5
MA0091.1	MA0091.1	0.763
MA0092.1	MA0092.1	0.253
MA0093.1	MA0093.1	0.674
MA0099.2	MA0099.2	5.78459e-11
MA0100.1	MA0100.1	0.229
MA0101.1	MA0101.1	0.864
MA0102.2	MA0102.2	0.0464
MA0103.1	MA0103.1	1.51521e-5
MA0104.2	MA0104.2	0.646
MA0105.1	MA0105.1	0.897
MA0106.1	MA0106.1	0.0636
MA0107.1	MA0107.1	0.871
MA0108.2	MA0108.2	2.25875e-14
MA0111.1	MA0111.1	0.782
MA0112.2	MA0112.2	0.0348
MA0113.1	MA0113.1	0.273
MA0114.1	MA0114.1	0.0315
MA0115.1	MA0115.1	0.157
MA0116.1	MA0116.1	0.57
MA0117.1	MA0117.1	0.24
MA0119.1	MA0119.1	0.0677
MA0122.1	MA0122.1	0.889
MA0124.1	MA0124.1	0.157
MA0125.1	MA0125.1	0.0688
MA0131.1	MA0131.1	0.173
MA0135.1	MA0135.1	0.191
MA0136.1	MA0136.1	0.0181
MA0137.2	MA0137.2	0.156
MA0138.2	MA0138.2	0.999
MA0139.1	MA0139.1	0.421
MA0140.1	MA0140.1	0.183
MA0141.1	MA0141.1	0.175
MA0142.1	MA0142.1	0.734
MA0143.1	MA0143.1	0.179
MA0144.1	MA0144.1	0.883
MA0145.1	MA0145.1	0.0372
MA0146.1	MA0146.1	0.114
MA0147.1	MA0147.1	0.928
MA0148.1	MA0148.1	0.191
MA0149.1	MA0149.1	0.255
MA0150.1	MA0150.1	0.416
MA0152.1	MA0152.1	0.438
MA0153.1	MA0153.1	0.0436
MA0154.1	MA0154.1	0.253
MA0155.1	MA0155.1	0.121
MA0156.1	MA0156.1	0.152
MA0157.1	MA0157.1	0.22
MA0159.1	MA0159.1	0.0701
MA0160.1	MA0160.1	0.243
MA0162.1	MA0162.1	0.114
MA0163.1	MA0163.1	0.703
MA0164.1	MA0164.1	0.762
MA0258.1	MA0258.1	0.261
MA0259.1	MA0259.1	0.885

FANTOM5 phase1 novel unique motifsSummary:Association of the 169 novel and unique motifs discovered in FANTOM5 phase1 in this sample. Among the de-novo motifs discovered by DMF, HOMER,ChIPMunk, and ScanAll, only novel motifs are selected after comparison with known motif sets, and their clustering based on MACRO-APE resulted in169 novel and unique motifs. Their association to the promoter expression is evaluated in the same way to the JASPAR motif above Analyst: Michiel de Hoon link to dataset. data

library id: CNhs11325

Novel motif	Logo	P-value
1	1	0.983
10	10	0.259
100	100	0.938
101	101	0.123
102	102	0.959
103	103	0.32
104	104	0.649
105	105	0.075
106	106	0.0284
107	107	0.0146
108	108	0.578
109	109	0.0243
11	11	0.308
110	110	0.184
111	111	0.433
112	112	0.593
113	113	0.958
114	114	0.78
115	115	0.918
116	116	0.157
117	117	0.845
118	118	0.8
119	119	0.489
12	12	0.931
120	120	0.393
121	121	0.24
122	122	0.245
123	123	0.062
124	124	0.872
125	125	0.34
126	126	0.41
127	127	0.779
128	128	0.184
129	129	0.173
13	13	0.251
130	130	0.216
131	131	0.877
132	132	0.224
133	133	0.307
134	134	0.443
135	135	0.291
136	136	0.419
137	137	0.155
138	138	0.358
139	139	0.806
14	14	0.88
140	140	0.988
141	141	0.4
142	142	0.718
143	143	0.334
144	144	0.372
145	145	0.214
146	146	0.0329
147	147	0.974
148	148	0.185
149	149	0.114
15	15	0.386
150	150	0.342
151	151	0.543
152	152	0.0503
153	153	0.681
154	154	0.343
155	155	0.4
156	156	0.139
157	157	0.524
158	158	0.676
159	159	0.81
16	16	0.218
160	160	0.0366
161	161	0.641
162	162	0.0998
163	163	0.568
164	164	0.356
165	165	0.18
166	166	0.587
167	167	0.0715
168	168	0.758
169	169	0.119
17	17	0.225
18	18	0.154
19	19	0.486
2	2	0.193
20	20	0.613
21	21	0.993
22	22	0.295
23	23	0.29
24	24	0.226
25	25	0.793
26	26	0.188
27	27	0.373
28	28	0.414
29	29	0.863
3	3	0.932
30	30	0.0696
31	31	0.75
32	32	0.451
33	33	0.208
34	34	0.246
35	35	0.249
36	36	0.987
37	37	0.41
38	38	0.323
39	39	0.109
4	4	0.257
40	40	0.00328
41	41	0.967
42	42	0.694
43	43	0.367
44	44	0.863
45	45	0.227
46	46	0.398
47	47	0.587
48	48	0.391
49	49	0.506
5	5	0.757
50	50	0.224
51	51	0.507
52	52	0.244
53	53	0.668
54	54	0.626
55	55	0.635
56	56	0.264
57	57	0.662
58	58	0.839
59	59	0.0596
6	6	0.546
60	60	0.298
61	61	0.367
62	62	0.796
63	63	0.176
64	64	0.312
65	65	0.119
66	66	0.128
67	67	0.454
68	68	0.236
69	69	0.017
7	7	0.364
70	70	0.897
71	71	0.495
72	72	0.664
73	73	0.0591
74	74	0.161
75	75	0.955
76	76	0.178
77	77	0.00204
78	78	0.719
79	79	0.708
8	8	0.194
80	80	0.752
81	81	0.377
82	82	0.627
83	83	0.717
84	84	0.641
85	85	0.85
86	86	0.813
87	87	0.205
88	88	0.24
89	89	0.131
9	9	0.687
90	90	0.0279
91	91	0.317
92	92	0.789
93	93	0.822
94	94	0.922
95	95	0.122
96	96	0.933
97	97	0.615
98	98	0.491
99	99	0.00165

de novo motifs identified by HOMER in promoters active in this sampleSummary:The result of HOMER in this sample is shown. Analyst:NA library id: CNhs11325

FANTOM5 (FF) ontology

Direct parent terms

is_a relathionship
EFO:0002091 biological replicate
FF:0000012 human alveolar epithelial cell sample

Ancestor terms (non development)Summary:Connected ontology terms with is_a, part_of or located_in relationship Analyst: Hideya Kawaji link to source data data

CL: Cell type
0000000 (cell), 0000000 (cell)
0000003 (native cell)
0000548 (animal cell)
0000066 (epithelial cell)
0002371 (somatic cell)
0002202 (epithelial cell of tracheobronchial tree)
0000082 (epithelial cell of lung)
0000255 (eukaryotic cell)
0002076 (endo-epithelial cell)
0002632 (epithelial cell of lower respiratory tract)
0002368 (respiratory epithelial cell)
0000322 (pneumocyte)

UBERON: Anatomy
0000468 (multi-cellular organism)
0002048 (lung)
0002100 (trunk)
0000483 (epithelium)
0004821 (pulmonary alveolus epithelium)
0000479 (tissue)
0000064 (organ part)
0004119 (endoderm-derived structure)
0000466 (immaterial anatomical entity)
0000062 (organ)
0004111 (anatomical conduit)
0000475 (organism subdivision)
0000061 (anatomical structure)
0000465 (material anatomical entity)
0000063 (organ segment)
0003914 (epithelial tube)
0007499 (epithelial sac)
0004802 (respiratory tract epithelium)
0000025 (tube)
0005911 (endo-epithelium)
0000477 (anatomical cluster)
0000467 (anatomical system)
0000060 (anatomical wall)
0001062 (anatomical entity)
0000480 (anatomical group)
0000119 (cell layer)
0000490 (unilaminar epithelium)
0006914 (squamous epithelium)
0009569 (subdivision of trunk)
0005178 (thoracic cavity element)
0000487 (simple squamous epithelium)
0000072 (segment of respiratory tract)
0005177 (trunk region element)
0004807 (respiratory system epithelium)
0000117 (respiratory tube)
0000171 (respiration organ)
0000115 (lung epithelium)
0000464 (anatomical space)
0003215 (alveolus)
0005181 (thoracic segment organ)
0010317 (germ layer / neural crest derived structure)
0009856 (sac)
0010368 (pulmonary lobule)
0009911 (lobule)
0002299 (alveolus of lung)
0007196 (tracheobronchial tree)
0000065 (respiratory tract)
0001558 (lower respiratory tract)
0000170 (pair of lungs)
0001004 (respiratory system)
0002224 (thoracic cavity)
0000915 (thoracic segment of trunk)
0006524 (alveolar system)
0008874 (pulmonary acinus)
0002169 (alveolar sac)
0004894 (alveolar wall)

FF: FANTOM5
0000102 (sample by type)
0000210 (human sample)
0000002 (in vivo cell sample)
0000101 (sample by species)
0000001 (sample)
0000012 (human alveolar epithelial cell sample)

Ancestor terms (development)Summary:Connected ontology terms with develops_from, derives_from or preceded_by relationship Analyst: Hideya Kawaji link to source data data
CL:0000223 (endodermal cell)

@@ Line 1: / Line 1: @@
 {{f5samples
-|ancestors_in_anatomy_facet=UBERON:0000468,UBERON:0000922,UBERON:0002048,UBERON:0002100,UBERON:0000483,UBERON:0004821,UBERON:0000926,UBERON:0000479,UBERON:0001007,UBERON:0000064,UBERON:0000077,UBERON:0000466,UBERON:0000062,UBERON:0004111,UBERON:0000475,UBERON:0004120,UBERON:0000025,UBERON:0004119,UBERON:0000061,UBERON:0000465,UBERON:0000063,UBERON:0000480,UBERON:0000923,UBERON:0003914,UBERON:0007499,UBERON:0002050,UBERON:0004802,UBERON:0005153,UBERON:0005911,UBERON:0004921,UBERON:0005423,UBERON:0000477,UBERON:0000481,UBERON:0000467,UBERON:0000060,UBERON:0001062,UBERON:0000119,UBERON:0000490,UBERON:0006914,UBERON:0009569,UBERON:0005291,UBERON:0005178,UBERON:0000487,UBERON:0000072,UBERON:0005177,UBERON:0004807,UBERON:0000117,UBERON:0000171,UBERON:0003104,UBERON:0000115,UBERON:0000464,UBERON:0003215,UBERON:0001048,UBERON:0000925,UBERON:0005181,UBERON:0006598,UBERON:0004185,UBERON:0005157,UBERON:0009856,UBERON:0002532,UBERON:0002299,UBERON:0007196,UBERON:0001555,UBERON:0000065,UBERON:0001558,UBERON:0000170,UBERON:0001004,UBERON:0007026,UBERON:0001041,UBERON:0002224,UBERON:0000915,UBERON:0006524,UBERON:0008874,UBERON:0002169,UBERON:0009142,UBERON:0004894,UBERON:0008947,UBERON:0003258,UBERON:0005597,UBERON:0006595,UBERON:0006603,UBERON:0000118
+|DRA_sample_Accession=CAGE@SAMD00004797
-|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000144,CL:0000548,CL:0000012,CL:0002321,CL:0000063,CL:0000066,CL:0002371,CL:0000220,CL:0000004,CL:0002202,CL:0000082,CL:0000255,CL:0002076,CL:0002632,CL:0002368,CL:0000322,CL:0000223
+|DRA_sample_Accession_RNASeq=sRNA-Seq@SAMD00004797
+|accession_numbers=CAGE;DRX008104;DRR008976;DRZ000401;DRZ001786;DRZ011751;DRZ013136
+|accession_numbers_RNASeq=sRNA-Seq;DRX037247;DRR041613;DRZ007255
+|ancestors_in_anatomy_facet=UBERON:0000468,UBERON:0002048,UBERON:0002100,UBERON:0000483,UBERON:0004821,UBERON:0000479,UBERON:0000064,UBERON:0004119,UBERON:0000466,UBERON:0000062,UBERON:0004111,UBERON:0000475,UBERON:0000061,UBERON:0000465,UBERON:0000063,UBERON:0003914,UBERON:0007499,UBERON:0004802,UBERON:0000025,UBERON:0005911,UBERON:0000477,UBERON:0000467,UBERON:0000060,UBERON:0001062,UBERON:0000480,UBERON:0000119,UBERON:0000490,UBERON:0006914,UBERON:0009569,UBERON:0005178,UBERON:0000487,UBERON:0000072,UBERON:0005177,UBERON:0004807,UBERON:0000117,UBERON:0000171,UBERON:0000115,UBERON:0000464,UBERON:0003215,UBERON:0005181,UBERON:0010317,UBERON:0009856,UBERON:0010368,UBERON:0009911,UBERON:0002299,UBERON:0007196,UBERON:0000065,UBERON:0001558,UBERON:0000170,UBERON:0001004,UBERON:0002224,UBERON:0000915,UBERON:0006524,UBERON:0008874,UBERON:0002169,UBERON:0004894
+|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000548,CL:0000066,CL:0002371,CL:0002202,CL:0000082,CL:0000255,CL:0002076,CL:0002632,CL:0002368,CL:0000322
 |ancestors_in_disease_facet=
+|ancestors_in_ff_facet=FF:0000102,FF:0000210,FF:0000002,FF:0000101,FF:0000001,FF:0000012
 |comment=
 |created_by=
 |creation_date=
+|data_phase=2
+|datafreeze_phase=2
 |def=
 |expression_enrichment_score=chr4:57547454..57547469,-!p1@HOPX!2.44!273.26!HOPX;;chr11:61520075..61520136,+!p1@C11orf9!1.67!94.36!C11orf9;;chr16:86544113..86544145,+!p1@FOXF1!1.57!44.48!FOXF1;;chr1:201979703..201979721,+!p2@ELF3!1.45!27.03!ELF3;;chr17:46675558..46675577,-!p2@HOXB6!1.41!24.57!HOXB6;;chr18:19749386..19749404,+!p2@GATA6!1.40!34.16!GATA6;;chr6:134210243..134210257,+!p1@TCF21!1.38!23.10!TCF21;;chr1:201979743..201979762,+!p1@ELF3!1.38!23.10!ELF3;;chr7:27170359..27170381,-!p1@HOXA4!1.29!18.68!HOXA4;;chr18:19749541..19749557,+!p1@GATA6!1.25!52.59!GATA6;;chr17:46671108..46671147,-!p1@HOXB5!1.22!15.73!HOXB5;;chr5:92918919..92918942,+!p1@NR2F1!1.19!64.87!NR2F1;;chr6:1389789..1389821,+!p1@FOXF2!1.19!19.90!FOXF2;;chr1:209979467..209979494,-!p1@IRF6!1.19!16.46!IRF6;;chr17:46622205..46622218,-!p3@HOXB2!1.15!15.24!HOXB2;;chr7:27183263..27183284,-!p2@HOXA5!1.15!13.27!HOXA5;;chr12:66218255..66218304,+!p3@HMGA2!1.10!31.45!HMGA2;;chr14:38064429..38064486,-!p1@FOXA1!1.10!11.55!FOXA1;;chr8:102504651..102504683,+!p1@GRHL2!1.08!11.06!GRHL2;;chr6:34204921..34204939,+!p3@HMGA1!1.05!307.41!HMGA1;;chr20:6748325..6748352,+!p1@BMP2!1.04!14.50!BMP2;;chr11:46299199..46299233,+!p1@CREB3L1!1.03!51.11!CREB3L1;;chr5:2751762..2751784,-!p1@IRX2!1.03!9.83!IRX2;;chr7:1577899..1577943,+!p3@MAFK!1.03!9.83!MAFK;;chr7:27183291..27183324,-!p1@HOXA5!1.01!9.34!HOXA5;;chr17:46675539..46675551,-!p7@HOXB6!1.01!9.34!HOXB6;;chr19:46801639..46801699,+!p1@HIF3A!1.00!9.09!HIF3A;;chr6:34204672..34204692,+!p1@HMGA1!0.99!1002.59!HMGA1;;chr17:59477233..59477263,+!p1@TBX2!0.99!27.77!TBX2;;chr17:46675586..46675600,-!p6@HOXB6!0.99!8.85!HOXB6;;chr7:27153454..27153469,-!p2@HOXA3!0.99!8.85!HOXA3;;chr2:5832508..5832524,+!p1@SOX11!0.98!8.60!SOX11;;chr4:188916918..188916942,+!p1@ZFP42!0.98!8.60!ZFP42;;chr8:72756667..72756736,-!p2@MSC!0.94!12.29!MSC;;chr8:72756637..72756664,-!p3@MSC!0.94!8.85!MSC;;chr17:46675420..46675465,-!p3@HOXB6!0.92!8.60!HOXB6;;chr3:111314186..111314204,-!p1@ZBED2!0.92!7.37!ZBED2;;chr12:115121962..115121987,-!p1@TBX3!0.91!62.17!TBX3;;chr15:83953397..83953425,-!p1@BNC1!0.91!8.35!BNC1;;chr7:27183325..27183338,-!p5@HOXA5!0.91!7.13!HOXA5;;chr2:121493425..121493474,+!p1@GLI2!0.90!15.97!GLI2;;chr1:6479968..6479986,-!p1@HES2!0.90!6.88!HES2;;chr20:42543441..42543497,+!p1@TOX2!0.89!31.95!TOX2;;chr17:46622070..46622109,-!p1@HOXB2!0.88!15.24!HOXB2;;chr1:209979411..209979433,-!p2@IRF6!0.88!6.63!IRF6;;chr17:46622114..46622138,-!p4@HOXB2!0.87!10.08!HOXB2;;chr12:66218212..66218244,+!p5@HMGA2!0.85!9.09!HMGA2;;chr17:46655704..46655718,-!p2@HOXB4!0.84!9.09!HOXB4;;chr20:22564895..22564910,-!p1@FOXA2!0.84!5.90!FOXA2;;chr5:92918894..92918912,+!p2@NR2F1!0.82!19.41!NR2F1;;chr16:67881588..67881612,-!p2@CENPT!0.82!7.86!CENPT;;chr18:19749353..19749367,+!p4@GATA6!0.82!5.65!GATA6;;chr17:41623692..41623715,-!p1@ETV4!0.81!24.82!ETV4;;chr17:41622765..41622821,-!p2@ETV4!0.81!8.60!ETV4;;chr11:65686732..65686756,+!p2@DRAP1!0.80!24.33!DRAP1;;chr17:46667594..46667619,-!p1@HOXB3!0.79!5.16!HOXB3;;chr7:27170274..27170308,-!p3@HOXA4!0.79!5.16!HOXA4;;chr7:27183191..27183214,-!p4@HOXA5!0.79!5.16!HOXA5;;chr12:115122005..115122016,-!p3@TBX3!0.78!6.14!TBX3;;chr17:70117153..70117174,+!p1@SOX9!0.77!55.04!SOX9;;chr19:45908292..45908374,-!p1@PPP1R13L!0.77!47.92!PPP1R13L;;chr11:65667884..65667895,-!p2@FOSL1!0.77!20.64!FOSL1;;chr6:126240380..126240430,+!p2@NCOA7!0.77!13.52!NCOA7;;chr12:66218183..66218209,+!p4@HMGA2!0.77!9.83!HMGA2;;chr18:19749517..19749531,+!p3@GATA6!0.76!8.85!GATA6;;chr6:1312325..1312340,+!p1@FOXQ1!0.75!7.86!FOXQ1;;chr3:170076314..170076334,+!p2@SKIL!0.74!6.14!SKIL;;chr12:66218152..66218174,+!p10@HMGA2!0.74!4.91!HMGA2;;chr20:42295745..42295765,+!p1@MYBL2!0.73!79.86!MYBL2;;chr9:35732647..35732678,+!p2@CREB3!0.73!26.78!CREB3;;chr11:65686802..65686818,+!p6@DRAP1!0.73!8.11!DRAP1;;chr17:46675619..46675642,-!p5@HOXB6!0.73!4.42!HOXB6;;chr19:17356189..17356221,-!p2@NR2F6!0.72!7.37!NR2F6;;chr12:54447599..54447630,+!p3@HOXC4!0.72!5.41!HOXC4;;chr1:8938709..8938720,-!p3@ENO1!0.71!224.60!ENO1;;chr11:65667846..65667868,-!p1@FOSL1!0.71!122.87!FOSL1;;chr17:1958388..1958404,+!p1@HIC1!0.71!29.49!HIC1;;chr2:46524897..46524911,+!p2@EPAS1!0.71!12.78!EPAS1;;chr17:46667628..46667642,-!p2@HOXB3!0.71!4.18!HOXB3;;chr17:46675469..46675481,-!p4@HOXB6!0.71!4.18!HOXB6;;chr12:115122318..115122331,-!p2@TBX3!0.71!4.18!TBX3;;chr7:27153428..27153440,-!p3@HOXA3!0.71!4.18!HOXA3;;chr1:23885981..23886002,-!p1@ID3!0.70!801.09!ID3;;chr20:42295713..42295738,+!p2@MYBL2!0.70!26.78!MYBL2;;chr10:94449703..94449718,+!p1@HHEX!0.70!17.20!HHEX;;chr1:151032860..151032918,+!p1@MLLT11!0.69!52.59!MLLT11;;chr2:122042770..122042785,-!p1@TFCP2L1!0.69!3.93!TFCP2L1;;chr12:54447637..54447659,+!p4@HOXC4!0.69!3.93!HOXC4;;chr7:27169801..27169844,-!p2@HOXA4!0.69!3.93!HOXA4;;chr7:27183114..27183138,-!p3@HOXA5!0.69!3.93!HOXA5;;chr15:67357924..67357952,+!p2@SMAD3!0.68!28.75!SMAD3;;chr8:102504690..102504704,+!p3@GRHL2!0.67!3.69!GRHL2;;chr20:42543506..42543549,+!p2@TOX2!0.66!9.58!TOX2;;chr9:35732514..35732530,+!p5@CREB3!0.66!5.41!CREB3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+|fantom_cat=http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000066;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000082;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000213;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000222;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000223;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0002076;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0002078;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0002368;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0002632;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:1000746;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0000060;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0000065;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0000353;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0000487;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0001558;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0002048;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0004807;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0004875;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0005153;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0005157;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0005181;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0005911;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0006914;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0007499;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0008947
+|ffid_belonging_in_development=CL:0000223
 |fonse_cell_line=
 |fonse_cell_line_closure=
@@ Line 35: / Line 44: @@
 |fonse_treatment_closure=
 |has_quality=
+|hg19bam=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/Alveolar%2520Epithelial%2520Cells%252c%2520donor1.CNhs11325.11510-119G7.hg19.nobarcode.bam
+|hg19ctss=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/Alveolar%2520Epithelial%2520Cells%252c%2520donor1.CNhs11325.11510-119G7.hg19.ctss.bed.gz
+|hg19fasta=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/Alveolar%2520Epithelial%2520Cells%252c%2520donor1.CNhs11325.11510-119G7.hg19.nobarcode.rdna.fa.gz
+|hg38bam=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.primary_cell.hCAGE/Alveolar%2520Epithelial%2520Cells%252c%2520donor1.CNhs11325.11510-119G7.hg38.nobarcode.bam
+|hg38ctss=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.primary_cell.hCAGE/Alveolar%2520Epithelial%2520Cells%252c%2520donor1.CNhs11325.11510-119G7.hg38.nobarcode.ctss.bed.gz
 |id=FF:11510-119G7
 |is_a=EFO:0002091;;FF:0000012
 |is_obsolete=
+|library_id=CNhs11325
+|library_id_phase_based=2:CNhs11325
+|microRNAs=
+|microRNAs_nn=
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+|microRNAs_nonnovel_srna=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2016/vis_viewer/#/human#srna;sample;SRhi10015.CGATGT.11510
+|microRNAs_novel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer_novel/#/human#cage;sample;11510
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 |name=Alveolar Epithelial Cells, donor1
 |namespace=FANTOM5
@@ Line 43: / Line 65: @@
 |profile_cagescan=,,,
 |profile_hcage=CNhs11325,LSID768,release014,COMPLETED
-|profile_rnaseq=,,,
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 |rna_box=119
 |rna_catalog_number=SC3205
@@ Line 57: / Line 82: @@
 |rna_tube_id=119G7
 |rna_weight_ug=10
+|rnaseq_library_id=SRhi10015.CGATGT
 |sample_age=
+|sample_category=primary cells
 |sample_cell_catalog=N/A
 |sample_cell_line=
@@ Line 79: / Line 106: @@
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 |xref=
+|zenbu_report=https://fantom.gsc.riken.jp/zenbu/reports/#miRNA_expression_atlas_human;search_select_hide=table111:FF:11510-119G7;search_select_hide=table117:FF:11510-119G7
 }}

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FF:11510-119G7: Difference between revisions

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Latest revision as of 18:05, 4 June 2020

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	Mozilla Cavendish skin modified by DaSch for the Web Community Wiki GitHub project page – Report a bug – Skin version: 2.6.0