FF:11600-120H7: Difference between revisions

Latest revision as of 18:11, 4 June 2020

Name:	Urothelial Cells, donor2
Species:	Human (Homo sapiens)
Library ID:	CNhs12091
Sample type:	primary cells
Genomic View:	UCSC
RefEX:	Specific genes
FANTOM CAT:	1, 2, 3, 4
CAGEd-oPOSSUM:	link
ZENBU report :	link

Additional information

Sample information

strain	NA
tissue	bladder
dev stage	NA
sex	NA
age	NA
cell type	urothelial cell
cell line	NA
company	Sciencell/3H
collaboration	FANTOM5 OSC CORE (contact: Al Forrest)
External link for information	[{{{sample_info_link}}} {{{sample_info_link}}}]

RNA information

lot number	lot:4521
catalog number	SC4325
sample type	total RNA
extraction protocol (Details)	OP-RNA-extraction-totalRNA-TRIzol-ethanol-v1.0

CAGE Accession numbers

Method		Sample accession id
CAGE		SAMD00005904

Library accession numbers

Library id		Method		Exp. accession id		Run accession id
CNhs12091		CAGE		DRX008526		DRR009398

Accession ID Hg19

Library id		BAM		CTSS
CNhs12091		DRZ000823		DRZ002208

Accession ID Hg38

Library id		BAM		CTSS
CNhs12091		DRZ012173		DRZ013558

Download raw sequence, BAM & CTSS

Hg19

Fasta	BAM	CTSS
download	download	donwload

Hg38

BAM	CTSS
download	donwload

RNA-Seq Accession numbers

Method		Sample accession id
sRNA-Seq		SAMD00005904

Library accession numbers

Library id		Method		Exp. accession id		Run accession id
SRhi10010.GGTAGC		sRNA-Seq		DRX037163		DRR041529

Accession ID Hg19

Library id		BAM		CTSS
SRhi10010.GGTAGC		DRZ007171

Relative expression to median (log10)

Transcription factors with enriched expression in this sampleRanked list of transcription factor promoter expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.

Co-expression clusters with enriched expression in this sampleRanked list of co-expression cluster expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed. Analyst:NA link to dataset. data

Coexpression cluster	score
C0-CD14-Eosinophils-Neutrophils-Basophils-CD34-immature-Peripheral	0
C1-testis-epididymis-embryonic-medulla-pituitary-trachea-caudate	0
C10-occipital-temporal-parietal-brain-duodenum-Neurons-Neural	0
C100-rhabdomyosarcoma-gastric-pineal-Wilms-cervical-mesodermal-endometrial	0
C101-small-cerebellum-maxillary-colon-parietal-epididymis-merkel	0
C102-neuroblastoma-testicular-pituitary-carcinosarcoma-rectum-acantholytic-iPS	0
C103-CD4-CD8-Natural-Peripheral-Whole-Neutrophils-Basophils	0
C104-Mast-Basophils-immature-CD14-CD34-eye-Natural	0
C105-heart-skeletal-occipital-hippocampus-acute-Sebocyte-penis	0
C106-Hep2-epitheloid-placenta-cervical-rectal-anaplastic-glassy	0
C107-Neutrophils-CD14-Eosinophils-Monocytederived-Whole-Peripheral-blood	0
C108-breast-hepatoblastoma-MCF7-parotid-salivary-submaxillary-prostate	0
C109-Reticulocytes-non-acute-Hodgkin-Burkitt-retinoblastoma-lymphoma	-0.362
C11-cerebellum-medulla-pons-parietal-occipital-middle-medial	0
C110-leukemia-chronic-Eosinophils-acute-Whole-CD34-Lymphatic	0
C111-medulla-lung-trachea-testis-caudate-epididymis-throat	0
C112-gastric-pancreas-temporal-duodenum-small-extraskeletal-adrenal	0
C113-thyroid-throat-lung-lymph-small-colon-trachea	0
C114-teratocarcinoma-medulloblastoma-carcinosarcoma-iPS-anaplastic-acute-neuroblastoma	0
C115-pituitary-Neural-caudate-putamen-amygdala-medulla-hippocampus	0
C116-myeloma-xeroderma-tonsil-CD19-spleen-lymph-trachea	0
C117-serous-clear-kidney-neuroectodermal-mesothelioma-endometrial-Intestinal	0
C118-cerebellum-parietal-occipital-medial-middle-frontal-insula	0
C119-CD4-CD8-Natural-Neutrophils-CD14-Peripheral-CD19	0
C12-Mast-Basophils-immature-chorionic-mature-CD14-Eosinophils	0
C120-immature-salivary-tongue-skin-cervical-CD14-CD34	0
C121-NK-Natural-CD8-CD4-anaplastic-chronic-B	0
C122-chronic-Reticulocytes-skeletal-leukemia-acute-colon-Tracheal	0
C123-CD19-Natural-CD8-CD4-CD14-Peripheral-Basophils	0
C124-small-temporal-duodenum-colon-gall-signet-Hepatocyte	0
C125-mucinous-alveolar-mesothelioma-Smooth-lung-CD14-Nucleus	0
C126-gastrointestinal-argyrophil-smallcell-merkel-bile-insula-brain	0
C127-maxillary-small-hepatoblastoma-hepatocellular-alveolar-colon-argyrophil	0
C128-testicular-choriocarcinoma-H9-teratocarcinoma-pancreatic-iPS-HES3GFP	0
C129-liver-Hepatocyte-colon-duodenum-temporal-testicular-small	0
C13-Neutrophils-Eosinophils-CD14-Monocytederived-Whole-Peripheral-CD4	0
C130-iPS-HES3GFP-H9-teratocarcinoma-testicular-colon-Alveolar	0
C131-lung-trachea-Alveolar-thyroid-umbilical-throat-skin	0
C132-acute-small-Dendritic-Macrophage-CD14-Neutrophils-Monocytederived	0
C133-signet-gall-small-kidney-colon-ductal-adenocarcinoma	0
C134-skeletal-diaphragm-tongue-throat-Skeletal-skin-penis	0
C135-neuroblastoma-retinoblastoma-carcinoid-choriocarcinoma-testicular-acute-rectum	0
C136-Wilms-extraskeletal-anaplastic-rhabdomyosarcoma-cholangiocellular-nonsmall-neuroectodermal	0
C137-large-ductal-melanoma-cervical-Endothelial-Smooth-chronic	0
C138-diffuse-Burkitt-lymphangiectasia-lymphoma-acute-CD19-pineal	0
C139-astrocytoma-skin-salivary-gall-serous-Mallassezderived-renal	0
C14-Whole-blood-Reticulocytes-liver-Neutrophils-Eosinophils-spleen	0
C140-Renal-Endothelial-Hepatic-Lymphatic-heart-lung-spleen	0
C141-Hodgkin-acute-thymus-chronic-vein-CD4-B	0
C142-Preadipocyte-Fibroblast-hepatic-Ewing-Adipocyte-Olfactory-Hair	0.429
C143-Monocytederived-CD14-Macrophage-Dendritic-Basophils-CD14CD16-Osteoblast	0
C144-CD4-tonsil-NK-appendix-CD8-splenic-mycosis	0
C145-neuroblastoma-peripheral-neuroectodermal-neuroepithelioma-carcinoid-adult-extraskeletal	0
C146-lymphangiectasia-lymphoma-gall-lymph-tonsil-gastric-transitionalcell	0
C147-Neutrophils-Eosinophils-CD4-CD14-CD8-Natural-Peripheral	0
C148-kidney-small-epididymis-pancreas-serous-duodenum-temporal	0
C149-occipital-medial-brain-amygdala-parietal-cerebral-cerebellum	0
C15-anaplastic-small-skeletal-neuroblastoma-parietal-temporal-tongue	0
C150-merkel-carcinoid-nonsmall-gastrointestinal-argyrophil-pineal-small	0
C151-CD14-Natural-Basophils-CD8-Eosinophils-CD4-Mast	0
C152-peripheral-neuroectodermal-neuroepithelioma-neuroblastoma-testicular-carcinoid-lung	0
C153-rhabdomyosarcoma-liposarcoma-pancreatic-somatostatinoma-Reticulocytes-lymphoma-testicular	0
C154-adenocarcinoma-Mesenchymal-Cardiac-small-sacrococcigeal-Smooth-Prostate	0
C155-pituitary-placenta-nonsmall-cervical-smallcell-choriocarcinoma-epitheloid	0
C156-plasma-splenic-hereditary-B-large-xeroderma-b	0
C157-testicular-H9-testis-iPS-teratocarcinoma-colon-trachea	0
C158-adrenal-gastric-temporal-parietal-duodenum-caudate-putamen	0
C159-choriocarcinoma-pancreatic-placenta-chorionic-testicular-bronchioalveolar-seminal	0
C16-medial-amygdala-occipital-parietal-olfactory-putamen-brain	0
C160-medulla-Hepatocyte-retina-corpus-liver-pineal-cerebral	0
C161-mesothelioma-Mesothelial-acute-mesenchymal-extraskeletal-renal-placenta	0
C162-spinal-locus-medulla-substantia-thalamus-globus-diencephalon	0
C163-Skeletal-skeletal-Pericytes-Hepatic-rhabdomyosarcoma-throat-mesenchymal	0
C164-signet-corpus-optic-mucinous-substantia-salivary-choriocarcinoma	0
C165-epithelioid-Adipocyte-mesothelioma-myxofibrosarcoma-lung-gastric-Mesothelial	0
C166-Macrophage-Monocytederived-Dendritic-adipose-lymph-CD14-lung	0
C167-Basophils-Mast-Eosinophils-Neutrophils-Peripheral-Whole-CD4	0
C168-Mast-CD14-immature-Basophils-Eosinophils-CD34-Peripheral	0
C169-hereditary-adult-gall-lymphangiectasia-chronic-b-choriocarcinoma	0
C17-Mast-CD14-Monocytederived-Lymphatic-Smooth-mesenchymal-Macrophage	0
C170-epitheloid-cervical-Hep2-keratoacanthoma-adult-neuroblastoma-signet	0
C171-merkel-neuroblastoma-pineal-retinoblastoma-carcinoid-small-eye	0
C172-chorionic-skeletal-tongue-amniotic-liver-gastrointestinal-Pericytes	0
C173-Adipocyte-mature-skin-left-Hepatocyte-Osteoblast-adipose	0
C174-CD14-Neutrophils-Smooth-mesothelioma-embryonic-Monocytederived-Eosinophils	0
C175-Eosinophils-Neutrophils-CD4-Basophils-CD19-CD8-Natural	-0.095
C176-Eosinophils-Neutrophils-Mast-CD14-CD4-Basophils-CD19	-0.456
C177-melanoma-Melanocyte-mesenchymal-retina-Mallassezderived-Gingival-squamous	0
C178-spleen-liver-Hepatocyte-b-lymph-vein-thymus	0
C179-CD19-Peripheral-lymphoma-blood-lymph-spleen-tonsil	0
C18-CD4-CD8-thymus-Whole-Peripheral-Natural-blood	0
C180-skeletal-heart-Hepatocyte-acute-occipital-hippocampus-middle	0.137
C181-liposarcoma-somatostatinoma-neuroblastoma-mesothelioma-nonsmall-small-Alveolar	0
C182-renal-mature-mesothelioma-lung-Mammary-Adipocyte-acute	0
C183-acute-non-CD34-diffuse-CD133-myeloma-Burkitt	0
C184-somatostatinoma-smallcell-nonsmall-small-gastrointestinal-pineal-thyroid	0
C185-small-adrenal-gastric-Mesenchymal-acute-HES3GFP-testis	0
C186-squamous-papillotubular-large-Tracheal-oral-Small-epidermoid	0
C187-migratory-immature-Dendritic-CD19-CD14-Monocytederived-Macrophage	0
C188-left-heart-tongue-skeletal-Skeletal-diaphragm-throat	0
C189-b-splenic-tonsil-CD19-lymph-appendix-spleen	0
C19-embryonic-testis-cord-chronic-CD14-NK-mesothelioma	0
C190-colon-small-rectum-duodenum-appendix-temporal-oral	0
C191-leiomyoblastoma-Mast-parietal-acute-bone-neuroepithelioma-embryonic	0
C192-Neutrophils-CD14-Peripheral-Eosinophils-CD8-Natural-CD4	0
C193-Mesenchymal-Adipocyte-mature-Cardiac-heart-CD14CD16-CD14	0
C194-MCF7-breast-prostate-Intestinal-diffuse-Wilms-Alveolar	0
C195-Small-Gingival-Bronchial-Smooth-mesenchymal-Urothelial-Tracheal	0
C196-testicular-iPS-H9-teratocarcinoma-HES3GFP-choriocarcinoma-endometrial	0
C197-tongue-esophagus-tonsil-salivary-cervix-nasal-Gingival	0
C198-Mesenchymal-Hair-Hepatic-Fibroblast-Smooth-tenocyte-Pericytes	0
C199-glioblastoma-B-osteosarcoma-Fibroblast-heart-rhabdomyosarcoma-myxofibrosarcoma	0
C2-Eosinophils-Neutrophils-CD14-Whole-Basophils-Peripheral-Mast	0
C20-heart-left-skeletal-diaphragm-tongue-umbilical-throat	0
C200-seminal-Cardiac-Smooth-Hair-submaxillary-Neutrophils-mixed	0.258
C201-colon-small-adenocarcinoma-duodenum-temporal-signet-gall	0
C202-salivary-skin-penis-tongue-uterus-cervical-immature	0
C203-acute-NK-chronic-CD133-lymphoma-immature-Dendritic	0
C204-Smooth-nasal-CD4-CD19-CD8-CD14-CD34	0
C205-mycosis-cord-hairy-xeroderma-CD4-B-b	0
C206-melanoma-somatostatinoma-nonsmall-small-neuroblastoma-smallcell-pituitary	0
C207-Corneal-Keratinocyte-Esophageal-Mammary-Bronchial-Urothelial-Sebocyte	0.782
C208-skin-amniotic-papillotubular-salivary-umbilical-Alveolar-serous	0
C209-acute-myelodysplastic-CD34-granulocyte-CD133-liver-spleen	0
C21-cord-mycosis-hairy-xeroderma-adult-CD4-anaplastic	0
C210-Burkitt-lymphoma-appendix-acute-diffuse-CD19-tonsil	0
C211-small-Hepatocyte-liver-colon-temporal-duodenum-kidney	0
C212-chronic-acute-Whole-Reticulocytes-leukemia-blood-CD34	0
C213-CD14-Natural-CD8-CD4-Basophils-Eosinophils-Peripheral	0
C214-Neurons-Neural-duodenum-temporal-occipital-parietal-brain	0
C215-chronic-acute-peripheral-Hepatocyte-osteosarcoma-NK-immature	0
C216-osteosarcoma-Smooth-Mesenchymal-large-neuroectodermal-acute-CD34	0
C217-carcinoid-neuroectodermal-mature-mesodermal-colon-acute-occipital	0
C218-tonsil-lymph-CD19-spleen-colon-appendix-salivary	0
C219-nasal-Basophils-amniotic-Melanocyte-CD14-Osteoblast-duodenum	0
C22-CD4-CD8-Natural-Basophils-CD14-Peripheral-CD19	0
C220-Adipocyte-mature-left-breast-skin-liver-adipose	0
C221-alveolar-Osteoblast-Myoblast-mesenchymal-liposarcoma-Smooth-hepatocellular	0
C222-Melanocyte-Tracheal-Neutrophils-seminal-Smooth-Hair-Chondrocyte	0.311
C223-Chondrocyte-basal-renal-Fibroblast-Smooth-spindle-Synoviocyte	0
C224-clear-serous-pleomorphic-choriocarcinoma-mesothelioma-amniotic-renal	0
C225-ductal-alveolar-giant-prostate-salivary-squamous-Tracheal	0
C226-Corneal-Keratinocyte-Esophageal-Urothelial-Mammary-Bronchial-Tracheal	1.252
C227-chorionic-amniotic-Mesenchymal-Placental-gastric-diaphragm-tongue	0
C228-colon-Intestinal-Prostate-hepatoblastoma-hepatocellular-testis-adult	0
C229-Mesenchymal-CD4-Melanocyte-acute-skeletal-left-heart	0
C23-CD4-CD8-Natural-Peripheral-Basophils-CD19-CD14	0
C230-aorta-normal-heart-penis-osteosarcoma-basal-lung	0
C231-Mesothelial-mesenchymal-mesothelioma-Fibroblast-Preadipocyte-leiomyoma-mycosis	0
C232-teratocarcinoma-HES3GFP-H9-iPS-testicular-neuroblastoma-cerebellum	0
C233-uterus-cervix-ovary-epididymis-colon-rectum-MCF7	0
C234-oral-epidermoid-malignant-cervical-ductal-lung-keratoacanthoma	0
C235-Intestinal-Prostate-liver-colon-small-kidney-pancreas	0
C236-CD14-Neutrophils-Monocytederived-renal-Eosinophils-testis-mesothelioma	0
C237-acute-breast-testicular-hepatoblastoma-chronic-argyrophil-Bronchial	0
C238-stomach-gall-breast-duodenum-temporal-MCF7-smallcell	0
C239-CD4-lymphangiectasia-CD8-NK-mycosis-Renal-hairy	0
C24-pineal-eye-retina-retinoblastoma-medulloblastoma-small-cerebral	0
C240-Adipocyte-Preadipocyte-Osteoblast-Chondrocyte-tenocyte-Synoviocyte-mesenchymal	0
C241-Reticulocytes-chronic-Tracheal-Hodgkin-Endothelial-Hair-thymus	-0.104
C242-acute-Chondrocyte-myelodysplastic-granulocyte-biphenotypic-Fibroblast-stomach	0
C243-Chondrocyte-trachea-Synoviocyte-mesodermal-renal-Fibroblast-Ewing	0
C244-CD14-Monocytederived-Hepatocyte-heart-Neutrophils-acute-Macrophage	0
C245-prostate-penis-salivary-esophagus-kidney-Neutrophils-Pancreatic	0
C246-Neutrophils-Eosinophils-Whole-CD14-CD14CD16-Basophils-migratory	0
C247-pons-locus-medulla-spinal-paracentral-medial-occipital	0
C248-iPS-Aortic-Hep2-amygdala-acute-medial-Myoblast	0
C249-nonsmall-small-smallcell-occipital-somatostatinoma-maxillary-medial	0
C25-small-colon-temporal-duodenum-liver-Hepatocyte-gall	0
C250-Mast-Neutrophils-CD14-Eosinophils-CD8-Peripheral-CD4	0
C251-gall-tonsil-trachea-CD14-salivary-throat-tongue	0
C252-hepatic-Olfactory-sacrococcigeal-leiomyoma-normal-Synoviocyte-glioblastoma	0
C253-spleen-rhabdomyosarcoma-Hepatocyte-small-uterus-liver-rectum	0
C254-prostate-rhabdomyosarcoma-seminal-Fibroblast-transitionalcell-Smooth-Iris	0
C255-Wilms-leiomyoblastoma-kidney-adrenal-MCF7-epithelioid-Mast	0
C256-occipital-caudate-amygdala-medial-thalamus-hippocampus-medulla	0
C257-pineal-insula-frontal-occipital-temporal-medial-paracentral	0
C258-hepatoblastoma-hepatocellular-signet-colon-Intestinal-Prostate-gastric	0
C259-Preadipocyte-Adipocyte-Fibroblast-Chondrocyte-tenocyte-normal-Ewing	0
C26-Eosinophils-Neutrophils-CD14-CD14CD16-Basophils-Monocytederived-Whole	0
C260-acute-chronic-Natural-NK-Basophils-biphenotypic-blood	0
C261-locus-medial-parietal-pons-diencephalon-olfactory-spinal	0
C262-breast-MCF7-skeletal-Reticulocytes-mucinous-hepatoblastoma-Wilms	0
C263-cervical-keratoacanthoma-tongue-skin-esophagus-throat-tonsil	0
C264-giant-keratoacanthoma-colon-fibrosarcoma-HES3GFP-Hep2-acute	0
C265-CD4-Eosinophils-CD14-Natural-CD19-Basophils-CD8	0
C266-acute-chronic-leukemia-small-choriocarcinoma-hepatoma-Mast	0
C267-pancreatic-placenta-choriocarcinoma-testicular-teratocarcinoma-chorionic-clear	0
C268-Mallassezderived-Urothelial-Gingival-Small-Bronchial-Tracheal-Prostate	0.64
C269-Basophils-Mast-Eosinophils-mature-CD14-chorionic-CD4	0
C27-pancreas-temporal-duodenum-salivary-ductus-umbilical-lung	0
C270-CD4-Fibroblast-acute-iPS-Aortic-CD34-Smooth	0
C271-pineal-spinal-locus-globus-medulla-thalamus-cerebellum	0
C272-CD19-CD4-CD8-Whole-Peripheral-lymph-tonsil	0
C273-Neutrophils-CD14-Eosinophils-Monocytederived-CD4-Natural-Mast	0
C274-CD14-Mast-immature-Basophils-mature-vagina-Hepatocyte	0
C275-pons-medulla-cerebellum-locus-thalamus-diencephalon-spinal	0
C276-mesothelioma-kidney-renal-small-clear-cerebellum-Renal	0
C277-mesothelioma-epithelioid-thyroid-extraskeletal-alveolar-glioblastoma-adenocarcinoma	0
C278-amygdala-hippocampus-insula-medial-putamen-temporal-olfactory	0
C279-parietal-cerebellum-occipital-temporal-middle-duodenum-medial	0
C28-thymus-acute-vein-Hodgkin-chronic-throat-Dendritic	0
C280-Mast-Natural-CD19-CD8-Eosinophils-CD34-CD4	0
C281-Hodgkin-Reticulocytes-chronic-NK-acute-retinoblastoma-small	-0.0599
C282-acute-B-tonsil-CD19-submaxillary-lymph-throat	0
C283-tenocyte-Chondrocyte-mesenchymal-Macrophage-pleomorphic-Synoviocyte-cholangiocellular	0
C284-parietal-occipital-medial-temporal-olfactory-locus-hippocampus	0
C285-cervical-Hep2-small-colon-temporal-duodenum-bronchogenic	0
C286-cerebellum-occipital-optic-parietal-globus-caudate-medial	0
C287-Hepatocyte-Chondrocyte-Adipocyte-Synoviocyte-liver-tenocyte-mesenchymal	0
C288-Chondrocyte-Renal-Pericytes-Fibroblast-aorta-Smooth-Meningeal	0
C289-chorionic-skeletal-heart-Mast-amniotic-granulosa-left	0
C29-mature-adipose-Adipocyte-breast-Lymphatic-vein-heart	0
C290-Eosinophils-CD14-Basophils-Mast-CD4-CD8-immature	0
C291-spinal-substantia-retina-medulla-tongue-skeletal-trachea	0
C292-Mesenchymal-skin-umbilical-Adipocyte-mesenchymal-Chondrocyte-skeletal	0
C293-CD14-CD14CD16-Basophils-Peripheral-immature-Eosinophils-CD34	0
C294-CD14-Macrophage-Monocytederived-CD14CD16-Neutrophils-Basophils-Peripheral	0
C295-Fibroblast-Smooth-Myoblast-Chondrocyte-hepatic-Synoviocyte-Preadipocyte	0.429
C296-gall-small-mesothelioma-acute-bronchioalveolar-epidermoid-mixed	0
C297-Eosinophils-CD4-Basophils-Natural-Neutrophils-CD8-Peripheral	0
C298-small-optic-substantia-thalamus-diencephalon-globus-occipital	0
C299-CD14CD16-Eosinophils-Neutrophils-CD14-Whole-Basophils-blood	0
C3-occipital-temporal-insula-medial-postcentral-frontal-amygdala	0
C30-thyroid-throat-mesothelioma-mucinous-trachea-chorionic-mesenchymal	0
C300-CD4-CD8-NK-Natural-blood-mycosis-Basophils	0
C301-Smooth-mesenchymal-Endothelial-Hepatic-basal-hepatic-chorionic	0.429
C302-acute-peripheral-Neutrophils-NK-myelodysplastic-CD34-carcinoid	0
C303-CD14-Basophils-Peripheral-Eosinophils-CD14CD16-Neutrophils-Whole	0
C305-heart-skeletal-smooth-left-bladder-penis-esophagus	0
C31-skeletal-tongue-diaphragm-throat-penis-skin-trachea	0
C32-middle-occipital-parietal-hippocampus-amygdala-medial-olfactory	0
C33-Reticulocytes-liver-Whole-blood-chronic-acute-spleen	0
C34-placenta-chorionic-choriocarcinoma-mesothelioma-Wilms-Smooth-bile	0
C35-caudate-putamen-diencephalon-nucleus-globus-thalamus-insula	0
C36-B-b-splenic-plasma-xeroderma-adrenal-Burkitt	0
C37-salivary-submaxillary-parotid-seminal-tongue-ductus-trachea	0
C38-extraskeletal-rhabdomyosarcoma-adrenal-rectal-mesothelioma-lung-Wilms	0
C39-epididymis-ductus-seminal-testis-acute-thyroid-CD133	0
C4-optic-corpus-substantia-medulla-spinal-thalamus-globus	0
C40-eye-retina-Lens-pineal-tongue-retinoblastoma-small	0
C41-retina-eye-medulla-Retinal-medulloblastoma-kidney-pineal	0
C42-small-lung-maxillary-pharyngeal-Mesenchymal-Wilms-colon	0
C43-ductus-seminal-duodenum-temporal-gall-prostate-bladder	0
C44-Dendritic-CD19-CD133-granulocyte-acute-thymus-immature	0
C45-testicular-choriocarcinoma-H9-teratocarcinoma-Wilms-pancreatic-iPS	0
C46-acute-Hodgkin-thymus-CD8-chronic-CD4-merkel	0
C47-CD19-Burkitt-acute-xeroderma-tonsil-lymphoma-appendix	0
C48-smooth-bladder-esophagus-colon-penis-aorta-uterus	0
C49-H9-iPS-testicular-HES3GFP-teratocarcinoma-hepatoblastoma-choriocarcinoma	0
C5-Hepatocyte-liver-hepatocellular-Intestinal-kidney-small-pancreas	0
C50-chorionic-placenta-amniotic-migratory-smallcell-chronic-choriocarcinoma	0
C51-kidney-mesothelioma-renal-signet-gall-lung-pancreas	0
C52-adult-NK-chronic-cord-testis-embryonic-myeloma	0
C53-medulloblastoma-pineal-retinoblastoma-small-retina-eye-pituitary	0
C54-Dendritic-Macrophage-Monocytederived-CD14-leiomyoma-adipose-immature	0
C55-hepatocellular-Intestinal-liver-Prostate-fibrosarcoma-Hepatocyte-hepatoblastoma	0
C56-heart-left-umbilical-skeletal-penis-diaphragm-tongue	0
C57-Neutrophils-Eosinophils-Whole-CD4-CD8-CD19-Natural	0
C58-Melanocyte-melanoma-retina-Retinal-eye-migratory-H9	0
C59-Smooth-Fibroblast-Mesenchymal-tenocyte-Ewing-skin-hepatic	0
C6-CD14-Eosinophils-Basophils-Peripheral-CD34-Natural-immature	0
C60-esophagus-tonsil-throat-tongue-uterus-cervix-cervical	0
C61-migratory-Dendritic-immature-Macrophage-xeroderma-cord-b	0
C62-Burkitt-tonsil-CD19-submaxillary-spleen-salivary-lymph	0
C63-neuroectodermal-neuroblastoma-carcinoid-peripheral-chronic-neuroepithelioma-acute	0
C64-Mast-chronic-acute-immature-chorionic-Basophils-Dendritic	0
C65-CD14-Eosinophils-Monocytederived-Basophils-immature-Macrophage-Neutrophils	0
C66-cerebellum-middle-occipital-parietal-medial-amygdala-hippocampus	0
C67-CD14-Monocytederived-Macrophage-dura-Dendritic-spleen-lung	0
C68-amniotic-chorionic-Placental-salivary-placenta-tongue-mesothelioma	0
C69-anaplastic-CD14-cord-hairy-mycosis-adult-NK	0
C7-CD14-Eosinophils-Neutrophils-Smooth-Basophils-Macrophage-Mast	0
C70-parotid-submaxillary-salivary-throat-trachea-aorta-tongue	0
C71-Monocytederived-Macrophage-CD14-Dendritic-Osteoblast-leiomyoma-Prostate	0
C72-skeletal-tongue-throat-heart-diaphragm-penis-left	0
C73-pineal-eye-retina-caudate-cerebellum-left-parietal	0
C74-splenic-B-b-plasma-xeroderma-lymphoma-hairy	0
C75-Eosinophils-Natural-CD8-Basophils-CD14-CD4-Peripheral	0
C76-argyrophil-gastrointestinal-temporal-duodenum-neuroblastoma-merkel-smallcell	0
C77-Saos2-osteosarcoma-Neutrophils-Natural-Chondrocyte-Basophils-CD8	0
C78-lymphoma-plasma-tonsil-appendix-lymph-seminal-trachea	0
C79-chorionic-Chondrocyte-Cardiac-Smooth-Fibroblast-Preadipocyte-Mesenchymal	0
C8-Natural-CD8-Basophils-CD4-CD14-Peripheral-CD34	0
C80-immature-migratory-CD14-Dendritic-splenic-cord-Mast	0
C81-trachea-salivary-throat-aorta-eye-submaxillary-parotid	0
C82-Basophils-CD14-Eosinophils-Natural-Peripheral-immature-CD34	0
C83-choriocarcinoma-pancreatic-placenta-chorionic-HES3GFP-testicular-amniotic	0
C84-choriocarcinoma-pancreatic-Wilms-Mallassezderived-thymus-salivary-colon	0
C85-neuroblastoma-carcinoid-retinoblastoma-small-pineal-rhabdomyosarcoma-medulloblastoma	0
C86-colon-carcinoid-small-neuroectodermal-giant-large-neuroepithelioma	0
C87-retinoblastoma-left-nonsmall-heart-small-diaphragm-bronchogenic	0
C88-Melanocyte-melanoma-Macrophage-Mesenchymal-migratory-Dendritic-Monocytederived	0
C89-small-retinoblastoma-medulloblastoma-iPS-acantholytic-eye-bronchogenic	0
C9-skeletal-diaphragm-tongue-throat-penis-heart-left	0
C90-neuroectodermal-peripheral-neuroepithelioma-neuroblastoma-carcinoid-parietal-putamen	0
C91-Fibroblast-Smooth-mesenchymal-Mesothelial-Small-Preadipocyte-Hair	0
C92-CD14CD16-CD14-Eosinophils-Basophils-Neutrophils-Macrophage-Whole	0
C93-chronic-acute-leukemia-acantholytic-medulloblastoma-testis-papillotubular	0
C94-smallcell-adrenal-lung-nonsmall-small-somatostatinoma-teratocarcinoma	0
C95-lung-aorta-trachea-penis-Alveolar-throat-endometrioid	0
C96-non-acute-tonsil-spleen-Burkitt-lymphoma-appendix	0
C97-small-smallcell-gastrointestinal-argyrophil-putamen-duodenum-brain	0
C98-CD8-Natural-Basophils-blood-CD4-Peripheral-Whole	0
C99-hairy-mycosis-submaxillary-salivary-cord-kidney-parotid	0

Repeat families with enriched expression in this sampleSummary:Ranked list of repeat family expression in this sample relative tothe median expression in the FANTOM5 collection is shown. Value is log10transformed. Analyst:NA link to dataset. data

TFBS(DNA)motifs over-represented in proximal region of promoters active in this sample

JASPAR motifsSummary:Association of JASPAR motif to the promoter expression in thissample. Pearson's correlation between the number of TFBSs estimated byusing the position-weight matrix for each promoter and its expression isexpressed as Z-score by taking the ones based on random position-weightmatrix, and the tail probability of the normal distribution correspondingto the Z-score is taken as the resulting P-value. Lower P-value indicatesmore (non-random) association of the motif to promoter expression Analyst: Michiel de Hoon link to dataset. data

library id: CNhs12091

Jaspar motif	Logo	P-value
MA0002.2	MA0002.2	0.0572
MA0003.1	MA0003.1	0.351
MA0004.1	MA0004.1	0.812
MA0006.1	MA0006.1	0.316
MA0007.1	MA0007.1	0.271
MA0009.1	MA0009.1	0.389
MA0014.1	MA0014.1	0.829
MA0017.1	MA0017.1	0.0384
MA0018.2	MA0018.2	0.00357
MA0019.1	MA0019.1	0.665
MA0024.1	MA0024.1	0.00276
MA0025.1	MA0025.1	0.0619
MA0027.1	MA0027.1	0.871
MA0028.1	MA0028.1	0.00639
MA0029.1	MA0029.1	0.0903
MA0030.1	MA0030.1	0.154
MA0031.1	MA0031.1	0.0648
MA0035.2	MA0035.2	0.0993
MA0038.1	MA0038.1	0.207
MA0039.2	MA0039.2	0.341
MA0040.1	MA0040.1	0.389
MA0041.1	MA0041.1	0.3
MA0042.1	MA0042.1	0.671
MA0043.1	MA0043.1	0.00188
MA0046.1	MA0046.1	0.201
MA0047.2	MA0047.2	0.43
MA0048.1	MA0048.1	0.77
MA0050.1	MA0050.1	0.0179
MA0051.1	MA0051.1	0.0496
MA0052.1	MA0052.1	0.677
MA0055.1	MA0055.1	0.63
MA0057.1	MA0057.1	0.0915
MA0058.1	MA0058.1	0.569
MA0059.1	MA0059.1	0.452
MA0060.1	MA0060.1	0.0315
MA0061.1	MA0061.1	0.18
MA0062.2	MA0062.2	8.10521e-5
MA0065.2	MA0065.2	0.00172
MA0066.1	MA0066.1	0.0102
MA0067.1	MA0067.1	0.109
MA0068.1	MA0068.1	0.00269
MA0069.1	MA0069.1	0.948
MA0070.1	MA0070.1	0.938
MA0071.1	MA0071.1	0.667
MA0072.1	MA0072.1	0.888
MA0073.1	MA0073.1	0.638
MA0074.1	MA0074.1	0.675
MA0076.1	MA0076.1	9.89388e-4
MA0077.1	MA0077.1	0.714
MA0078.1	MA0078.1	0.291
MA0079.2	MA0079.2	0.799
MA0080.2	MA0080.2	0.0206
MA0081.1	MA0081.1	0.0509
MA0083.1	MA0083.1	0.402
MA0084.1	MA0084.1	0.00585
MA0087.1	MA0087.1	0.442
MA0088.1	MA0088.1	0.694
MA0090.1	MA0090.1	0.0634
MA0091.1	MA0091.1	0.358
MA0092.1	MA0092.1	0.241
MA0093.1	MA0093.1	0.683
MA0099.2	MA0099.2	1.37955e-6
MA0100.1	MA0100.1	0.181
MA0101.1	MA0101.1	0.87
MA0102.2	MA0102.2	0.0413
MA0103.1	MA0103.1	9.97051e-4
MA0104.2	MA0104.2	0.787
MA0105.1	MA0105.1	0.027
MA0106.1	MA0106.1	2.30621e-5
MA0107.1	MA0107.1	0.58
MA0108.2	MA0108.2	0.0672
MA0111.1	MA0111.1	0.629
MA0112.2	MA0112.2	1.92183e-4
MA0113.1	MA0113.1	0.435
MA0114.1	MA0114.1	0.0558
MA0115.1	MA0115.1	0.793
MA0116.1	MA0116.1	0.0182
MA0117.1	MA0117.1	0.493
MA0119.1	MA0119.1	0.0318
MA0122.1	MA0122.1	0.58
MA0124.1	MA0124.1	0.398
MA0125.1	MA0125.1	0.336
MA0131.1	MA0131.1	0.0747
MA0135.1	MA0135.1	0.979
MA0136.1	MA0136.1	0.00333
MA0137.2	MA0137.2	0.0246
MA0138.2	MA0138.2	0.0233
MA0139.1	MA0139.1	0.302
MA0140.1	MA0140.1	0.327
MA0141.1	MA0141.1	0.13
MA0142.1	MA0142.1	0.103
MA0143.1	MA0143.1	0.287
MA0144.1	MA0144.1	0.932
MA0145.1	MA0145.1	0.082
MA0146.1	MA0146.1	0.121
MA0147.1	MA0147.1	0.987
MA0148.1	MA0148.1	0.135
MA0149.1	MA0149.1	0.0281
MA0150.1	MA0150.1	0.384
MA0152.1	MA0152.1	0.0976
MA0153.1	MA0153.1	0.0229
MA0154.1	MA0154.1	0.0251
MA0155.1	MA0155.1	0.206
MA0156.1	MA0156.1	0.0314
MA0157.1	MA0157.1	0.278
MA0159.1	MA0159.1	0.0485
MA0160.1	MA0160.1	0.154
MA0162.1	MA0162.1	0.0693
MA0163.1	MA0163.1	0.0339
MA0164.1	MA0164.1	0.704
MA0258.1	MA0258.1	0.00462
MA0259.1	MA0259.1	0.672

FANTOM5 phase1 novel unique motifsSummary:Association of the 169 novel and unique motifs discovered in FANTOM5 phase1 in this sample. Among the de-novo motifs discovered by DMF, HOMER,ChIPMunk, and ScanAll, only novel motifs are selected after comparison with known motif sets, and their clustering based on MACRO-APE resulted in169 novel and unique motifs. Their association to the promoter expression is evaluated in the same way to the JASPAR motif above Analyst: Michiel de Hoon link to dataset. data

library id: CNhs12091

Novel motif	Logo	P-value
1	1	0.283
10	10	0.872
100	100	0.744
101	101	0.921
102	102	0.591
103	103	0.158
104	104	0.399
105	105	0.0732
106	106	0.0109
107	107	0.0187
108	108	0.298
109	109	0.0996
11	11	0.0807
110	110	0.224
111	111	0.154
112	112	0.29
113	113	0.464
114	114	0.151
115	115	0.719
116	116	0.438
117	117	0.476
118	118	0.663
119	119	0.0853
12	12	0.776
120	120	0.0509
121	121	0.409
122	122	0.254
123	123	0.317
124	124	0.989
125	125	0.408
126	126	0.506
127	127	0.0447
128	128	0.0352
129	129	0.0681
13	13	0.217
130	130	0.869
131	131	0.947
132	132	0.195
133	133	0.0264
134	134	0.45
135	135	0.0172
136	136	0.692
137	137	0.699
138	138	0.439
139	139	0.117
14	14	0.631
140	140	0.0599
141	141	0.396
142	142	0.0379
143	143	0.0612
144	144	0.945
145	145	0.119
146	146	0.144
147	147	0.143
148	148	0.217
149	149	0.145
15	15	0.223
150	150	0.391
151	151	0.179
152	152	0.0661
153	153	0.85
154	154	0.834
155	155	0.372
156	156	0.0123
157	157	0.538
158	158	0.933
159	159	0.671
16	16	0.172
160	160	0.0555
161	161	0.421
162	162	0.291
163	163	0.837
164	164	0.822
165	165	0.772
166	166	0.863
167	167	0.743
168	168	0.443
169	169	0.0298
17	17	0.0753
18	18	0.082
19	19	0.329
2	2	0.238
20	20	0.641
21	21	0.773
22	22	0.247
23	23	0.0592
24	24	0.291
25	25	0.979
26	26	0.186
27	27	0.177
28	28	0.924
29	29	0.502
3	3	0.258
30	30	0.315
31	31	0.36
32	32	0.293
33	33	0.542
34	34	0.457
35	35	0.698
36	36	0.238
37	37	0.301
38	38	0.235
39	39	0.274
4	4	0.351
40	40	0.0427
41	41	0.522
42	42	0.585
43	43	0.234
44	44	0.149
45	45	0.218
46	46	0.134
47	47	0.209
48	48	0.197
49	49	0.224
5	5	0.469
50	50	0.583
51	51	0.4
52	52	0.266
53	53	0.806
54	54	0.329
55	55	0.297
56	56	0.378
57	57	0.234
58	58	0.519
59	59	0.042
6	6	0.632
60	60	0.137
61	61	0.796
62	62	0.355
63	63	0.149
64	64	0.173
65	65	0.0449
66	66	0.731
67	67	0.36
68	68	0.706
69	69	0.142
7	7	0.499
70	70	0.00173
71	71	0.146
72	72	0.721
73	73	0.124
74	74	0.466
75	75	0.258
76	76	0.767
77	77	0.0359
78	78	0.123
79	79	0.118
8	8	0.0863
80	80	0.67
81	81	0.465
82	82	0.16
83	83	0.322
84	84	0.659
85	85	0.0567
86	86	0.833
87	87	0.55
88	88	0.204
89	89	0.018
9	9	0.528
90	90	0.917
91	91	0.0657
92	92	0.099
93	93	0.543
94	94	0.0823
95	95	0.245
96	96	0.481
97	97	0.91
98	98	0.152
99	99	0.115

de novo motifs identified by HOMER in promoters active in this sampleSummary:The result of HOMER in this sample is shown. Analyst:NA library id: CNhs12091

FANTOM5 (FF) ontology

Direct parent terms

is_a relathionship
EFO:0002091 biological replicate
FF:0000191 human urothelial cell sample

Ancestor terms (non development)Summary:Connected ontology terms with is_a, part_of or located_in relationship Analyst: Hideya Kawaji link to source data data

CL: Cell type
0000000 (cell), 0000000 (cell)
0000003 (native cell)
0000548 (animal cell)
0000066 (epithelial cell)
0002371 (somatic cell)
0000255 (eukaryotic cell)
0000244 (transitional epithelial cell)
0000731 (urothelial cell)

UBERON: Anatomy
0000468 (multi-cellular organism)
0000483 (epithelium)
0005910 (transitional epithelium)
0000479 (tissue)
0004119 (endoderm-derived structure)
0006554 (urinary system structure)
0000061 (anatomical structure)
0000465 (material anatomical entity)
0005911 (endo-epithelium)
0000467 (anatomical system)
0001062 (anatomical entity)
0000480 (anatomical group)
0000119 (cell layer)
0000486 (multilaminar epithelium)
0010317 (germ layer / neural crest derived structure)
0000365 (urothelium)
0001008 (renal system)

FF: FANTOM5
0000102 (sample by type)
0000210 (human sample)
0000002 (in vivo cell sample)
0000101 (sample by species)
0000001 (sample)
0000191 (human urothelial cell sample)

Ancestor terms (development)Summary:Connected ontology terms with develops_from, derives_from or preceded_by relationship Analyst: Hideya Kawaji link to source data data
NA

@@ Line 1: / Line 1: @@
 {{f5samples
-|ancestors_in_anatomy_facet=UBERON:0000468,UBERON:0000922,UBERON:0000483,UBERON:0005910,UBERON:0000479,UBERON:0006554,UBERON:0004119,UBERON:0000061,UBERON:0000465,UBERON:0000480,UBERON:0000923,UBERON:0002050,UBERON:0005911,UBERON:0005423,UBERON:0000467,UBERON:0001062,UBERON:0000119,UBERON:0005291,UBERON:0000486,UBERON:0000925,UBERON:0006598,UBERON:0000365,UBERON:0002532,UBERON:0001008,UBERON:0006595
+|DRA_sample_Accession=CAGE@SAMD00005904
-|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000144,CL:0000548,CL:0000012,CL:0000063,CL:0000066,CL:0002371,CL:0000004,CL:0000255,CL:0000244,CL:0000731
+|DRA_sample_Accession_RNASeq=sRNA-Seq@SAMD00005904
+|accession_numbers=CAGE;DRX008526;DRR009398;DRZ000823;DRZ002208;DRZ012173;DRZ013558
+|accession_numbers_RNASeq=sRNA-Seq;DRX037163;DRR041529;DRZ007171
+|ancestors_in_anatomy_facet=UBERON:0000468,UBERON:0000483,UBERON:0005910,UBERON:0000479,UBERON:0004119,UBERON:0006554,UBERON:0000061,UBERON:0000465,UBERON:0005911,UBERON:0000467,UBERON:0001062,UBERON:0000480,UBERON:0000119,UBERON:0000486,UBERON:0010317,UBERON:0000365,UBERON:0001008
+|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000548,CL:0000066,CL:0002371,CL:0000255,CL:0000244,CL:0000731
 |ancestors_in_disease_facet=
+|ancestors_in_ff_facet=FF:0000102,FF:0000210,FF:0000002,FF:0000101,FF:0000001,FF:0000191
 |comment=
 |created_by=
 |creation_date=
+|data_phase=2
+|datafreeze_phase=2
 |def=
 |expression_enrichment_score=chr1:209979467..209979494,-!p1@IRF6!2.73!593.02!IRF6;;chr1:209979411..209979433,-!p2@IRF6!2.41!254.39!IRF6;;chr1:6479968..6479986,-!p1@HES2!2.18!149.94!HES2;;chr17:7493405..7493419,-!p1@SOX15!1.99!97.71!SOX15;;chr12:54785074..54785122,-!p2@ZNF385A!1.80!94.34!ZNF385A;;chr3:111314186..111314204,-!p1@ZBED2!1.75!55.60!ZBED2;;chr12:54785054..54785072,-!p4@ZNF385A!1.74!60.65!ZNF385A;;chr17:80797886..80797906,-!p1@ZNF750!1.67!45.49!ZNF750;;chr17:7492684..7492778,-!p2@SOX15!1.66!90.97!SOX15;;chr11:34642612..34642646,+!p1@EHF!1.65!43.80!EHF;;chr6:10415276..10415341,-!p2@TFAP2A!1.64!52.23!TFAP2A;;chr6:10412600..10412637,-!p1@TFAP2A!1.63!67.39!TFAP2A;;chr3:189507432..189507459,+!p1@TP63!1.60!38.75!TP63;;chr1:209979375..209979386,-!p4@IRF6!1.60!38.75!IRF6;;chr15:83953397..83953425,-!p1@BNC1!1.58!42.12!BNC1;;chr2:46524897..46524911,+!p2@EPAS1!1.44!72.44!EPAS1;;chr1:24645832..24645853,+!p1@GRHL3!1.39!23.59!GRHL3;;chr10:8096631..8096660,+!p1@GATA3!1.37!26.96!GATA3;;chr19:45908292..45908374,-!p1@PPP1R13L!1.36!187.00!PPP1R13L;;chr12:66218255..66218304,+!p3@HMGA2!1.30!50.54!HMGA2;;chr8:10588010..10588030,-!p1@SOX7!1.29!18.53!SOX7;;chr6:10415484..10415508,-!p3@TFAP2A!1.25!16.85!TFAP2A;;chr1:201979743..201979762,+!p1@ELF3!1.21!15.16!ELF3;;chr10:8096772..8096787,+!p2@GATA3!1.18!16.85!GATA3;;chr1:201979703..201979721,+!p2@ELF3!1.16!13.48!ELF3;;chr3:111314230..111314241,-!p2@ZBED2!1.16!13.48!ZBED2;;chr4:57547454..57547469,-!p1@HOPX!1.16!13.48!HOPX;;chr6:10412576..10412599,-!p5@TFAP2A!1.16!13.48!TFAP2A;;chr1:37940170..37940190,+!p1@ZC3H12A!1.15!160.05!ZC3H12A;;chr13:73633131..73633149,+!p1@KLF5!1.12!129.72!KLF5;;chr11:65554563..65554576,+!p2@OVOL1!1.11!11.79!OVOL1;;chr5:2751762..2751784,-!p1@IRX2!1.11!11.79!IRX2;;chr7:27205106..27205134,-!p2@HOXA9!1.11!11.79!HOXA9;;chr17:46682321..46682362,-!p1@HOXB6!1.11!11.79!HOXB6;;chr17:80797863..80797874,-!p2@ZNF750!1.11!11.79!ZNF750;;chr8:49833948..49833973,-!p2@SNAI2!1.10!74.13!SNAI2;;chr8:49833978..49833996,-!p1@SNAI2!1.09!234.18!SNAI2;;chr6:1312325..1312340,+!p1@FOXQ1!1.09!18.53!FOXQ1;;chr12:66218598..66218645,+!p2@HMGA2!1.06!48.86!HMGA2;;chr19:42636586..42636607,-!p1@POU2F2!1.05!28.64!POU2F2;;chr7:27205136..27205164,-!p1@HOXA9!1.05!10.11!HOXA9;;chr8:102504651..102504683,+!p1@GRHL2!1.05!10.11!GRHL2;;chr22:19748231..19748317,+!p1@TBX1!1.05!10.11!TBX1;;chr2:176969228..176969260,+!p1@HOXD11!1.05!10.11!HOXD11;;chr2:176994408..176994492,+!p1@HOXD8!1.05!10.11!HOXD8;;chr5:134369905..134369972,-!p1@PITX1!1.03!15.16!PITX1;;chr2:46524878..46524891,+!p3@EPAS1!1.02!16.85!EPAS1;;chr3:5021026..5021035,+!p5@BHLHE40!1.02!11.79!BHLHE40;;chr15:67418119..67418162,+!p5@SMAD3!1.00!10.11!SMAD3;;chr17:46675558..46675577,-!p2@HOXB6!0.97!8.42!HOXB6;;chr19:20278043..20278054,+!p2@ZNF486!0.97!8.42!ZNF486;;chr6:10413188..10413249,-!p7@TFAP2A!0.97!8.42!TFAP2A;;chr6:34524025..34524045,-!p3@SPDEF!0.97!8.42!SPDEF;;chr11:65554528..65554546,+!p1@OVOL1!0.97!8.42!OVOL1;;chr19:45908286..45908291,-!p3@PPP1R13L!0.97!8.42!PPP1R13L;;chr1:209979449..209979460,-!p3@IRF6!0.97!8.42!IRF6;;chr1:935467..935484,-!p1@HES4!0.96!37.06!HES4;;chr12:66218212..66218244,+!p5@HMGA2!0.95!11.79!HMGA2;;chr8:128748308..128748324,+!p2@MYC!0.92!210.59!MYC;;chr17:70117153..70117174,+!p1@SOX9!0.92!79.18!SOX9;;chr12:115121962..115121987,-!p1@TBX3!0.92!64.02!TBX3;;chr17:38465413..38465438,+!p5@RARA!0.92!11.79!RARA;;chr17:45928443..45928473,-!p2@SP6!0.89!6.74!SP6;;chr11:129245526..129245553,+!p1@BARX2!0.89!6.74!BARX2;;chr12:54332608..54332636,+!p1@HOXC13!0.89!6.74!HOXC13;;chr14:38064429..38064486,-!p1@FOXA1!0.89!6.74!FOXA1;;chr5:2751785..2751808,-!p2@IRX2!0.89!6.74!IRX2;;chr19:45908278..45908282,-!p5@PPP1R13L!0.89!6.74!PPP1R13L;;chr1:10856694..10856715,-!p3@CASZ1!0.89!6.74!CASZ1;;chr1:24645921..24645973,+!p2@GRHL3!0.89!6.74!GRHL3;;chr22:24093154..24093183,-!p2@ZNF70!0.89!6.74!ZNF70;;chr2:114036488..114036504,-!p1@PAX8!0.89!6.74!PAX8;;chr3:189507460..189507471,+!p3@TP63!0.89!6.74!TP63;;chrX:85403445..85403479,+!p2@DACH2!0.89!6.74!DACH2;;chrY:21906594..21906622,-!p1@KDM5D!0.89!6.74!KDM5D;;chr6:106546808..106546833,+!p3@PRDM1!0.88!8.42!PRDM1;;chr17:41623692..41623715,-!p1@ETV4!0.87!28.64!ETV4;;chr14:21566731..21566836,-!p1@ZNF219!0.84!67.39!ZNF219;;chr16:79633894..79633954,-!p3@MAF!0.84!11.79!MAF;;chr7:27135591..27135658,-!p1@HOXA1!0.84!11.79!HOXA1;;chr17:46687959..46688007,-!p2@HOXB7!0.84!8.42!HOXB7;;chr11:615570..615721,-!p2@IRF7!0.83!11.79!IRF7;;chr6:21597765..21597779,+!p2@SOX4!0.81!47.17!SOX4;;chr17:38465441..38465481,+!p6@RARA!0.80!6.74!RARA;;chr6:21593973..21593988,+!p1@SOX4!0.78!200.48!SOX4;;chr1:154975258..154975330,+!p1@ZBTB7B!0.78!20.22!ZBTB7B;;chr16:86612320..86612394,+!p1@FOXL1!0.78!5.05!FOXL1;;chr17:36104873..36104903,-!p3@HNF1B!0.78!5.05!HNF1B;;chr17:45928521..45928539,-!p1@SP6!0.78!5.05!SP6;;chr17:46703687..46703740,-!p1@HOXB9!0.78!5.05!HOXB9;;chr17:46703942..46703964,-!p4@HOXB9!0.78!5.05!HOXB9;;chr17:46806067..46806097,-!p1@HOXB13!0.78!5.05!HOXB13;;chrY:21906623..21906637,-!p3@KDM5D!0.78!5.05!KDM5D;;chr10:8097321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+|fantom_cat=http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000066;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000731;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0001008;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0005911
 |fonse_cell_line=
 |fonse_cell_line_closure=
@@ Line 35: / Line 43: @@
 |fonse_treatment_closure=
 |has_quality=
+|hg19bam=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/Urothelial%2520Cells%252c%2520donor2.CNhs12091.11600-120H7.hg19.nobarcode.bam
+|hg19ctss=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/Urothelial%2520Cells%252c%2520donor2.CNhs12091.11600-120H7.hg19.ctss.bed.gz
+|hg19fasta=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/Urothelial%2520Cells%252c%2520donor2.CNhs12091.11600-120H7.hg19.nobarcode.rdna.fa.gz
+|hg38bam=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.primary_cell.hCAGE/Urothelial%2520Cells%252c%2520donor2.CNhs12091.11600-120H7.hg38.nobarcode.bam
+|hg38ctss=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.primary_cell.hCAGE/Urothelial%2520Cells%252c%2520donor2.CNhs12091.11600-120H7.hg38.nobarcode.ctss.bed.gz
 |id=FF:11600-120H7
 |is_a=EFO:0002091;;FF:0000191
 |is_obsolete=
+|library_id=CNhs12091
+|library_id_phase_based=2:CNhs12091
+|microRNAs=
+|microRNAs_nn=
+|microRNAs_nonnovel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer/#/human#cage;sample;11600
+|microRNAs_nonnovel_srna=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2016/vis_viewer/#/human#srna;sample;SRhi10010.GGTAGC.11600
+|microRNAs_novel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer_novel/#/human#cage;sample;11600
+|microRNAs_novel_srna=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2016/vis_viewer_novel/#/human#srna;sample;SRhi10010.GGTAGC.11600
 |name=Urothelial Cells, donor2
 |namespace=FANTOM5
@@ Line 43: / Line 64: @@
 |profile_cagescan=,,,
 |profile_hcage=CNhs12091,LSID839,release011,COMPLETED
-|profile_rnaseq=,,,
+|profile_rnaseq=
 |profile_srnaseq=SRhi10010,,,
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 |rna_box=120
 |rna_catalog_number=SC4325
@@ Line 57: / Line 81: @@
 |rna_tube_id=120H7
 |rna_weight_ug=10
+|rnaseq_library_id=SRhi10010.GGTAGC
 |sample_age=
+|sample_category=primary cells
 |sample_cell_catalog=N/A
 |sample_cell_line=
@@ Line 79: / Line 105: @@
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 |xref=
+|zenbu_report=https://fantom.gsc.riken.jp/zenbu/reports/#miRNA_expression_atlas_human;search_select_hide=table111:FF:11600-120H7;search_select_hide=table117:FF:11600-120H7
 }}

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FF:11600-120H7: Difference between revisions

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Latest revision as of 18:11, 4 June 2020

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