FF:10421-106C7: Difference between revisions
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{{f5samples | {{f5samples | ||
|ancestors_in_anatomy_facet= | |DRA_sample_Accession=CAGE@SAMD00005098 | ||
|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003 | |DRA_sample_Accession_RNASeq=RNA-Seq@SAMD00005098 | ||
|accession_numbers=CAGE;DRX007824;DRR008696;DRZ000121;DRZ001506;DRZ011471;DRZ012856 | |||
|accession_numbers_RNASeq=RNA-Seq;DRX057121;DRR062880;DRZ007956 | |||
|ancestors_in_anatomy_facet= | |||
|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000988,CL:0000548,CL:0002371,CL:0000542,CL:0000219,CL:0000738,CL:0002087,CL:0002242,CL:0000255,CL:0000084 | |||
|ancestors_in_disease_facet=DOID:4,DOID:0050686,DOID:162,DOID:2531,DOID:0060058,DOID:14566,DOID:0060083,DOID:1240 | |ancestors_in_disease_facet=DOID:4,DOID:0050686,DOID:162,DOID:2531,DOID:0060058,DOID:14566,DOID:0060083,DOID:1240 | ||
|ancestors_in_ff_facet=FF:0000102,FF:0000003,FF:0000210,FF:0000101,FF:0000001,FF:0100737,FF:0101035,FF:0100104,FF:0103212,FF:0104049 | |||
|comment= | |comment= | ||
|created_by= | |created_by= | ||
|creation_date= | |creation_date= | ||
|datafreeze_phase= | |data_phase=2 | ||
|datafreeze_phase=2 | |||
|def= | |def= | ||
|expression_enrichment_score=chr6:391743..391759,+!p1@IRF4!2.87!746.89!IRF4;;chr1:201979703..201979721,+!p2@ELF3!1.91!81.02!ELF3;;chr19:36204309..36204335,+!p1@ZBTB32!1.90!78.34!ZBTB32;;chr9:77112244..77112262,+!p1@RORB!1.84!76.23!RORB;;chr1:25256756..25256774,-!p1@RUNX3!1.79!109.77!RUNX3;;chr10:8096631..8096660,+!p1@GATA3!1.76!67.20!GATA3;;chr1:23857698..23857733,-!p1@E2F2!1.70!87.82!E2F2;;chr19:22193731..22193751,-!p1@ZNF208!1.69!47.59!ZNF208;;chr2:231090433..231090469,+!p1@SP140!1.62!40.90!SP140;;chr4:185395590..185395627,-!p3@IRF2!1.51!38.34!IRF2;;chr6:135502501..135502546,+!p1@MYB!1.51!37.78!MYB;;chr2:231090471..231090504,+!p2@SP140!1.50!30.54!SP140;;chr7:63505799..63505904,+!p1@ZNF727!1.48!28.86!ZNF727;;chr6:106534192..106534224,+!p1@PRDM1!1.46!77.12!PRDM1;;chr1:151319654..151319698,-!p2@RFX5!1.46!59.96!RFX5;;chr1:201979743..201979762,+!p1@ELF3!1.46!27.97!ELF3;;chr2:68592406..68592424,+!p1@PLEK!1.44!26.41!PLEK;;chr6:106534230..106534254,+!p2@PRDM1!1.41!60.74!PRDM1;;chr19:4153613..4153652,+!p1@CREB3L3!1.40!24.18!CREB3L3;;chr17:45810594..45810608,+!p1@TBX21!1.38!23.07!TBX21;;chr13:36788658..36788703,-!p2@CCDC169-SOHLH2,p2@SOHLH2!1.27!17.61!SOHLH2;;chr7:50343634..50343717,+!p2@IKZF1!1.23!16.05!IKZF1;;chr19:22235279..22235301,+!p1@ZNF257!1.22!29.09!ZNF257;;chr10:8096772..8096787,+!p2@GATA3!1.22!18.39!GATA3;;chr7:50348268..50348366,+!p4@IKZF1!1.22!15.60!IKZF1;;chr3:189349162..189349207,+!p2@TP63!1.19!14.60!TP63;;chr7:50344289..50344323,+!p1@IKZF1!1.18!14.15!IKZF1;;chr1:212873267..212873332,-!p1@BATF3!1.16!18.17!BATF3;;chr19:16435625..16435682,+!p1@KLF2!1.15!418.02!KLF2;;chr19:33793430..33793447,-!p1@CEBPA!1.15!54.83!CEBPA;;chr7:50344251..50344288,+!p3@IKZF1!1.15!13.26!IKZF1;;chr9:77112225..77112238,+!p2@RORB!1.14!12.93!RORB;;chr10:64134045..64134083,+!p3@ZNF365!1.14!12.82!ZNF365;;chr14:61116183..61116208,-!p1@SIX1!1.13!47.81!SIX1;;chr7:148581327..148581347,-!p2@EZH2!1.12!41.23!EZH2;;chr19:22398550..22398579,-!p@chr19:22398550..22398579,-!1.12!12.04!ZNF676;;chr10:104155480..104155534,+!p2@NFKB2!1.11!77.23!NFKB2;;chr2:231090344..231090361,-!p3@SP110!1.11!11.81!SP110;;chr19:22966893..22966924,-!p2@ZNF99!1.10!11.59!ZNF99;;chr18:77155922..77155939,+!p1@NFATC1!1.09!31.32!NFATC1;;chr19:22817119..22817145,+!p1@ZNF492!1.09!19.06!ZNF492;;chr7:26191809..26191890,+!p1@NFE2L3!1.08!54.94!NFE2L3;;chr19:22605136..22605154,-!p1@ZNF98!1.04!10.03!ZNF98;;chr19:22966925..22966958,-!p1@ZNF99!1.03!9.70!ZNF99;;chr5:176738887..176738934,-!p1@MXD3!1.02!65.08!MXD3;;chr10:104154246..104154347,+!p3@NFKB2!1.02!59.62!NFKB2;;chr2:68592394..68592405,+!p2@PLEK!1.02!9.36!PLEK;;chr17:17726907..17726958,-!p2@SREBF1!1.01!58.17!SREBF1;;chr8:72756063..72756125,-!p1@MSC!1.00!18.61!MSC;;chr6:135502408..135502459,+!p2@MYB!1.00!10.59!MYB;;chr1:44679370..44679422,+!p3@DMAP1!0.99!11.59!DMAP1;;chr7:35293685..35293718,-!p1@TBX20!0.99!8.69!TBX20;;chr16:29819558..29819572,+!p28@MAZ!0.99!8.69!MAZ;;chr17:46703942..46703964,-!p4@HOXB9!0.98!8.58!HOXB9;;chr12:48298785..48298828,-!p1@VDR!0.96!44.58!VDR;;chr4:185395633..185395651,-!p2@IRF2!0.96!13.37!IRF2;;chr12:56415246..56415286,+!p2@IKZF4!0.96!8.14!IKZF4;;chr19:22469236..22469266,+!p1@ZNF729!0.96!8.02!ZNF729;;chr2:97202480..97202499,+!p1@ARID5A!0.93!78.57!ARID5A;;chr1:212873084..212873137,-!p2@BATF3!0.93!7.47!BATF3;;chr8:72756667..72756736,-!p2@MSC!0.92!11.59!MSC;;chr1:23857325..23857416,-!p2@E2F2!0.92!8.58!E2F2;;chr20:56195474..56195506,-!p1@ZBP1!0.92!7.24!ZBP1;;chr4:299227..299272,-!p1@ZNF732!0.92!7.24!ZNF732;;chr19:22605097..22605121,-!p2@ZNF98!0.92!7.24!ZNF98;;chr7:148581360..148581425,-!p1@EZH2!0.91!36.55!EZH2;;chr14:75988771..75988826,+!p1@BATF!0.90!9.47!BATF;;chr10:64134120..64134183,+!p1@ZNF365!0.90!8.47!ZNF365;;chr7:64838786..64838809,+!p2@ZNF92!0.89!40.90!ZNF92;;chr4:81104895..81104920,+!p2@PRDM8!0.89!10.36!PRDM8;;chr10:8100691..8100732,+!p5@GATA3!0.89!6.80!GATA3;;chr10:8095593..8095625,+!p3@GATA3!0.88!7.80!GATA3;;chr17:41739283..41739297,-!p1@MEOX1!0.88!6.58!MEOX1;;chr17:46703212..46703238,-!p2@HOXB9!0.88!6.58!HOXB9;;chr4:53206..53260,+!p1@ZNF595,p1@ZNF718!0.87!64.53!ZNF595;;chr19:12405606..12405629,-!p2@ZNF44!0.87!13.04!ZNF44;;chr17:46703687..46703740,-!p1@HOXB9!0.87!6.46!HOXB9;;chr9:14308004..14308041,-!p14@NFIB!0.87!6.46!NFIB;;chr16:31885093..31885165,+!p1@ZNF267!0.86!100.97!ZNF267;;chr17:41623692..41623715,-!p1@ETV4!0.85!27.30!ETV4;;chr8:72756637..72756664,-!p3@MSC!0.85!6.91!MSC;;chr1:92951607..92951661,-!p1@GFI1!0.85!6.02!GFI1;;chr2:42721205..42721307,+!p4@MTA3!0.85!6.02!MTA3;;chr19:8578683..8578750,-!p2@ZNF414!0.84!13.26!ZNF414;;chr10:104155455..104155479,+!p1@NFKB2!0.83!91.50!NFKB2;;chr19:23433144..23433204,-!p1@ZNF724P!0.83!27.30!ZNF724P;;chr4:4861385..4861398,+!p1@MSX1!0.83!18.28!MSX1;;chr3:5021113..5021180,+!p1@BHLHE40!0.82!422.15!BHLHE40;;chrY:21906594..21906622,-!p1@KDM5D!0.81!5.46!KDM5D;;chr8:71053850..71053871,-!p22@NCOA2!0.81!5.46!NCOA2;;chr11:128563948..128564003,+!p1@FLI1!0.80!69.43!FLI1;;chr10:35484053..35484076,+!p1@CREM!0.80!13.93!CREM;;chr14:61116168..61116180,-!p2@SIX1!0.80!6.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r19:38085768..38085821,+!p1@ZNF540!0.18!1.23!ZNF540;;chr3:23986876..23986885,+!p4@NR1D2!0.18!1.11!NR1D2;;chr3:48282607..48282618,+!p3@ZNF589!0.18!1.00!ZNF589;;chr4:1873216..1873238,+!p5@WHSC1!0.18!1.00!WHSC1;;chr15:37392593..37392607,-!p13@MEIS2!0.18!0.78!MEIS2;;chr18:52989001..52989030,-!p10@TCF4!0.18!0.67!TCF4;;chr12:53847004..53847008,+!p13@PCBP2!0.18!0.67!PCBP2;;chr2:74374995..74375055,-!p1@BOLA3!0.17!59.29!BOLA3;;chr1:90460661..90460745,+!p1@ZNF326!0.17!37.67!ZNF326;;chr18:45457192..45457278,-!p1@SMAD2!0.17!22.18!SMAD2;;chr1:91487553..91487612,-!p1@ZNF644!0.17!21.84!ZNF644;;chr11:3400340..3400422,-!p1@ZNF195!0.17!20.39!ZNF195;;chr2:174828545..174828644,-!p1@SP3!0.17!19.95!SP3;;chr19:52772832..52772861,+!p1@ZNF766!0.17!12.93!ZNF766;;chr15:77197655..77197716,-!p1@SCAPER!0.17!11.48!SCAPER;;chr4:106068026..106068084,+!p1@TET2!0.17!11.26!TET2;;chr4:2263861..2263883,-!p2@MXD4!0.17!7.24!MXD4;;chr10:97889784..97889827,+!p1@ZNF518A!0.17!5.80!ZNF518A;;chr10:96122645..96122675,-!p2@NOC3L!0.17!5.57!NOC3L;;chr2:208394817..208394834,+!p3@CREB1!0.17!4.68!CREB1;;chr3:150126706..150126754,+!p5@TSC22D2!0.17!3.34!TSC22D2;;chr21:34144115..34144138,-!p2@GCFC1!0.17!3.12!GCFC1;;chr3:52001426..52001447,-!p3@PCBP4!0.17!3.01!PCBP4;;chr19:7069426..7069482,+!p2@ZNF557!0.17!2.90!ZNF557;;chr1:42800848..42800859,-!p2@FOXJ3!0.17!2.90!FOXJ3;;chr1:41174988..41175047,+!p4@NFYC!0.17!2.79!NFYC;;chr19:37178482..37178520,+!p1@ZNF567!0.17!2.79!ZNF567;;chr5:138647473..138647476,+!p6@MATR3!0.17!2.56!MATR3;;chr1:61548069..61548102,+!p3@NFIA!0.17!2.45!NFIA;;chr12:72058060..72058101,+!p5@THAP2!0.17!2.45!THAP2;;chr10:43932296..43932360,+!p1@ZNF487P!0.17!2.01!ZNF487P;;chr7:64126535..64126559,+!p2@ZNF107!0.17!2.01!ZNF107;;chr19:925727..925784,+!p3@ARID3A!0.17!2.01!ARID3A;;chr5:142784101..142784130,-!p4@NR3C1!0.17!1.67!NR3C1;;chr6:31869828..31869880,-!p1@ZBTB12!0.17!1.67!ZBTB12;;chr19:20150268..20150298,-!p2@ZNF682!0.17!1.67!ZNF682;;chr3:101395999..101396010,-!p3@ZBTB11!0.17!1.56!ZBTB11;;chr12:56575310..56575344,-!p3@SMARCC2!0.17!1.34!SMARCC2;;chr1:8763510..8763538,-!p15@RERE!0.17!1.34!RERE;;chr1:247095162..247095173,-!p3@AHCTF1!0.17!1.23!AHCTF1;;chr11:16759983..16760029,-!p2@SOX6!0.17!1.23!SOX6;;chr2:214016496..214016544,-!p5@IKZF2!0.17!1.00!IKZF2;;chr1:211432872..211432883,+!p7@RCOR3!0.17!0.89!RCOR3;;chr7:152133109..152133116,-!p2@MLL3!0.17!0.89!MLL3;;chr11:130184828..130184839,-!p7@ZBTB44!0.17!0.78!ZBTB44;;chr15:37392576..37392589,-!p12@MEIS2!0.17!0.78!MEIS2;;chr17:42295777..42295816,-!p7@UBTF!0.17!0.78!UBTF;;chr4:81104985..81105005,+!p4@PRDM8!0.17!0.78!PRDM8;;chr12:27485733..27485742,+!p5@ARNTL2!0.17!0.67!ARNTL2;;chr16:30407021..30407061,+!p3@ZNF48!0.17!0.67!ZNF48;;chr20:44600785..44600794,-!p7@ZNF335!0.17!0.67!ZNF335;;chr12:53835508..53835533,+!p1@PRR13,p2@PCBP2!0.16!98.85!PCBP2;;chr7:101459263..101459310,+!p1@CUX1!0.16!76.78!CUX1;;chr1:168195229..168195294,+!p1@SFT2D2,p1@TBX19!0.16!57.84!TBX19;;chr13:20357063..20357105,-!p1@PSPC1!0.16!42.01!PSPC1;;chr19:36705998..36706021,+!p2@ZNF146!0.16!18.28!ZNF146;;chr1:246729483..246729538,-!p2@TFB2M!0.16!11.81!TFB2M;;chr14:58765217..58765301,+!p1@ARID4A!0.16!11.14!ARID4A;;chr10:21823128..21823216,+!p1@MLLT10!0.16!11.03!MLLT10;;chr12:51566849..51566927,-!p1@TFCP2!0.16!10.36!TFCP2;;chr7:44925044..44925156,-!p1@PURB!0.16!9.81!PURB;;chr16:69419749..69419786,-!p2@TERF2!0.16!6.69!TERF2;;chr19:58662139..58662182,-!p1@ZNF329!0.16!5.57!ZNF329;;chr16:69419794..69419830,-!p3@TERF2!0.16!5.46!TERF2;;chr6:28092375..28092412,+!p1@ZSCAN16!0.16!4.68!ZSCAN16;;chr17:11900745..11900804,-!p1@ZNF18!0.16!4.23!ZNF18;;chr16:30569678..30569720,-!p1@ZNF764!0.16!3.90!ZNF764;;chr19:926001..926046,+!p1@ARID3A!0.16!3.79!ARID3A;;chr16:89787402..89787430,+!p2@ZNF276!0.16!3.34!ZNF276;;chr19:42636586..42636607,-!p1@POU2F2!0.16!2.79!POU2F2;; | |expression_enrichment_score=chr6:391743..391759,+!p1@IRF4!2.87!746.89!IRF4;;chr1:201979703..201979721,+!p2@ELF3!1.91!81.02!ELF3;;chr19:36204309..36204335,+!p1@ZBTB32!1.90!78.34!ZBTB32;;chr9:77112244..77112262,+!p1@RORB!1.84!76.23!RORB;;chr1:25256756..25256774,-!p1@RUNX3!1.79!109.77!RUNX3;;chr10:8096631..8096660,+!p1@GATA3!1.76!67.20!GATA3;;chr1:23857698..23857733,-!p1@E2F2!1.70!87.82!E2F2;;chr19:22193731..22193751,-!p1@ZNF208!1.69!47.59!ZNF208;;chr2:231090433..231090469,+!p1@SP140!1.62!40.90!SP140;;chr4:185395590..185395627,-!p3@IRF2!1.51!38.34!IRF2;;chr6:135502501..135502546,+!p1@MYB!1.51!37.78!MYB;;chr2:231090471..231090504,+!p2@SP140!1.50!30.54!SP140;;chr7:63505799..63505904,+!p1@ZNF727!1.48!28.86!ZNF727;;chr6:106534192..106534224,+!p1@PRDM1!1.46!77.12!PRDM1;;chr1:151319654..151319698,-!p2@RFX5!1.46!59.96!RFX5;;chr1:201979743..201979762,+!p1@ELF3!1.46!27.97!ELF3;;chr2:68592406..68592424,+!p1@PLEK!1.44!26.41!PLEK;;chr6:106534230..106534254,+!p2@PRDM1!1.41!60.74!PRDM1;;chr19:4153613..4153652,+!p1@CREB3L3!1.40!24.18!CREB3L3;;chr17:45810594..45810608,+!p1@TBX21!1.38!23.07!TBX21;;chr13:36788658..36788703,-!p2@CCDC169-SOHLH2,p2@SOHLH2!1.27!17.61!SOHLH2;;chr7:50343634..50343717,+!p2@IKZF1!1.23!16.05!IKZF1;;chr19:22235279..22235301,+!p1@ZNF257!1.22!29.09!ZNF257;;chr10:8096772..8096787,+!p2@GATA3!1.22!18.39!GATA3;;chr7:50348268..50348366,+!p4@IKZF1!1.22!15.60!IKZF1;;chr3:189349162..189349207,+!p2@TP63!1.19!14.60!TP63;;chr7:50344289..50344323,+!p1@IKZF1!1.18!14.15!IKZF1;;chr1:212873267..212873332,-!p1@BATF3!1.16!18.17!BATF3;;chr19:16435625..16435682,+!p1@KLF2!1.15!418.02!KLF2;;chr19:33793430..33793447,-!p1@CEBPA!1.15!54.83!CEBPA;;chr7:50344251..50344288,+!p3@IKZF1!1.15!13.26!IKZF1;;chr9:77112225..77112238,+!p2@RORB!1.14!12.93!RORB;;chr10:64134045..64134083,+!p3@ZNF365!1.14!12.82!ZNF365;;chr14:61116183..61116208,-!p1@SIX1!1.13!47.81!SIX1;;chr7:148581327..148581347,-!p2@EZH2!1.12!41.23!EZH2;;chr19:22398550..22398579,-!p@chr19:22398550..22398579,-!1.12!12.04!ZNF676;;chr10:104155480..104155534,+!p2@NFKB2!1.11!77.23!NFKB2;;chr2:231090344..231090361,-!p3@SP110!1.11!11.81!SP110;;chr19:22966893..22966924,-!p2@ZNF99!1.10!11.59!ZNF99;;chr18:77155922..77155939,+!p1@NFATC1!1.09!31.32!NFATC1;;chr19:22817119..22817145,+!p1@ZNF492!1.09!19.06!ZNF492;;chr7:26191809..26191890,+!p1@NFE2L3!1.08!54.94!NFE2L3;;chr19:22605136..22605154,-!p1@ZNF98!1.04!10.03!ZNF98;;chr19:22966925..22966958,-!p1@ZNF99!1.03!9.70!ZNF99;;chr5:176738887..176738934,-!p1@MXD3!1.02!65.08!MXD3;;chr10:104154246..104154347,+!p3@NFKB2!1.02!59.62!NFKB2;;chr2:68592394..68592405,+!p2@PLEK!1.02!9.36!PLEK;;chr17:17726907..17726958,-!p2@SREBF1!1.01!58.17!SREBF1;;chr8:72756063..72756125,-!p1@MSC!1.00!18.61!MSC;;chr6:135502408..135502459,+!p2@MYB!1.00!10.59!MYB;;chr1:44679370..44679422,+!p3@DMAP1!0.99!11.59!DMAP1;;chr7:35293685..35293718,-!p1@TBX20!0.99!8.69!TBX20;;chr16:29819558..29819572,+!p28@MAZ!0.99!8.69!MAZ;;chr17:46703942..46703964,-!p4@HOXB9!0.98!8.58!HOXB9;;chr12:48298785..48298828,-!p1@VDR!0.96!44.58!VDR;;chr4:185395633..185395651,-!p2@IRF2!0.96!13.37!IRF2;;chr12:56415246..56415286,+!p2@IKZF4!0.96!8.14!IKZF4;;chr19:22469236..22469266,+!p1@ZNF729!0.96!8.02!ZNF729;;chr2:97202480..97202499,+!p1@ARID5A!0.93!78.57!ARID5A;;chr1:212873084..212873137,-!p2@BATF3!0.93!7.47!BATF3;;chr8:72756667..72756736,-!p2@MSC!0.92!11.59!MSC;;chr1:23857325..23857416,-!p2@E2F2!0.92!8.58!E2F2;;chr20:56195474..56195506,-!p1@ZBP1!0.92!7.24!ZBP1;;chr4:299227..299272,-!p1@ZNF732!0.92!7.24!ZNF732;;chr19:22605097..22605121,-!p2@ZNF98!0.92!7.24!ZNF98;;chr7:148581360..148581425,-!p1@EZH2!0.91!36.55!EZH2;;chr14:75988771..75988826,+!p1@BATF!0.90!9.47!BATF;;chr10:64134120..64134183,+!p1@ZNF365!0.90!8.47!ZNF365;;chr7:64838786..64838809,+!p2@ZNF92!0.89!40.90!ZNF92;;chr4:81104895..81104920,+!p2@PRDM8!0.89!10.36!PRDM8;;chr10:8100691..8100732,+!p5@GATA3!0.89!6.80!GATA3;;chr10:8095593..8095625,+!p3@GATA3!0.88!7.80!GATA3;;chr17:41739283..41739297,-!p1@MEOX1!0.88!6.58!MEOX1;;chr17:46703212..46703238,-!p2@HOXB9!0.88!6.58!HOXB9;;chr4:53206..53260,+!p1@ZNF595,p1@ZNF718!0.87!64.53!ZNF595;;chr19:12405606..12405629,-!p2@ZNF44!0.87!13.04!ZNF44;;chr17:46703687..46703740,-!p1@HOXB9!0.87!6.46!HOXB9;;chr9:14308004..14308041,-!p14@NFIB!0.87!6.46!NFIB;;chr16:31885093..31885165,+!p1@ZNF267!0.86!100.97!ZNF267;;chr17:41623692..41623715,-!p1@ETV4!0.85!27.30!ETV4;;chr8:72756637..72756664,-!p3@MSC!0.85!6.91!MSC;;chr1:92951607..92951661,-!p1@GFI1!0.85!6.02!GFI1;;chr2:42721205..42721307,+!p4@MTA3!0.85!6.02!MTA3;;chr19:8578683..8578750,-!p2@ZNF414!0.84!13.26!ZNF414;;chr10:104155455..104155479,+!p1@NFKB2!0.83!91.50!NFKB2;;chr19:23433144..23433204,-!p1@ZNF724P!0.83!27.30!ZNF724P;;chr4:4861385..4861398,+!p1@MSX1!0.83!18.28!MSX1;;chr3:5021113..5021180,+!p1@BHLHE40!0.82!422.15!BHLHE40;;chrY:21906594..21906622,-!p1@KDM5D!0.81!5.46!KDM5D;;chr8:71053850..71053871,-!p22@NCOA2!0.81!5.46!NCOA2;;chr11:128563948..128564003,+!p1@FLI1!0.80!69.43!FLI1;;chr10:35484053..35484076,+!p1@CREM!0.80!13.93!CREM;;chr14:61116168..61116180,-!p2@SIX1!0.80!6.24!SIX1;;chr16:29819579..29819591,+!p32@MAZ!0.80!5.35!MAZ;;chr19:2867325..2867348,+!p1@ZNF556!0.80!5.35!ZNF556;;chr1:212873200..212873230,-!p5@BATF3!0.80!5.35!BATF3;;chr7:19157043..19157088,-!p2@TWIST1!0.79!13.93!TWIST1;;chr19:13213662..13213686,-!p1@LYL1!0.77!7.58!LYL1;;chr9:2015335..2015370,+!p1@SMARCA2!0.76!64.53!SMARCA2;;chr19:45252008..45252024,+!p2@BCL3!0.76!17.16!BCL3;;chr12:56414795..56414836,+!p4@IKZF4!0.76!4.79!IKZF4;;chr19:24097675..24097699,+!p1@ZNF726!0.75!16.83!ZNF726;;chr12:27485762..27485776,+!p3@ARNTL2!0.75!13.48!ARNTL2;;chr12:48298765..48298783,-!p2@VDR!0.75!10.25!VDR;;chr3:32023232..32023273,+!p1@ZNF860!0.75!6.80!ZNF860;;chr7:50343895..50343936,+!p5@IKZF1!0.75!4.68!IKZF1;;chr1:47779762..47779827,-!p1@STIL,p1@TAL1!0.74!22.51!TAL1;;chr17:46655730..46655791,-!p1@HOXB4!0.74!12.26!HOXB4;;chr20:42543441..42543497,+!p1@TOX2!0.73!21.51!TOX2;;chr16:68119440..68119480,+!p4@NFATC3!0.73!7.58!NFATC3;;chrX:106960285..106960299,-!p1@TSC22D3!0.72!129.16!TSC22D3;;chr14:64970670..64970712,-!p3@ZBTB25!0.72!10.03!ZBTB25;;chr3:189348969..189349018,+!p4@TP63!0.72!4.23!TP63;;chr3:5020939..5020952,+!p2@BHLHE40!0.71!14.38!BHLHE40;;chr19:24097706..24097731,+!p2@ZNF726!0.71!8.47!ZNF726;;chr19:23941647..23941672,-!p2@ZNF681!0.71!7.24!ZNF681;;chr17:41277372..41277418,-!p1@BRCA1!0.70!16.05!BRCA1;;chr7:19157248..19157268,-!p1@TWIST1!0.70!12.15!TWIST1;;chr6:42419043..42419087,-!p2@TRERF1!0.70!8.58!TRERF1;;chr4:57547454..57547469,-!p1@HOPX!0.70!4.01!HOPX;;chr1:25256439..25256476,-!p3@RUNX3!0.70!4.01!RUNX3;;chr1:25291475..25291511,-!p2@RUNX3!0.70!4.01!RUNX3;;chr12:56415287..56415300,+!p5@IKZF4!0.70!4.01!IKZF4;;chr1:61548225..61548299,+!p1@NFIA!0.69!58.17!NFIA;;chr6:27440837..27440912,-!p1@ZNF184!0.69!20.28!ZNF184;;chr4:185395191..185395226,-!p4@IRF2!0.69!5.68!IRF2;;chr1:23857674..23857685,-!p3@E2F2!0.69!3.90!E2F2;;chr1:3569072..3569093,+!p1@TP73!0.69!3.90!TP73;;chr12:27485785..27485816,+!p1@ARNTL2!0.68!29.76!ARNTL2;;chr20:42295713..42295738,+!p2@MYBL2!0.68!25.52!MYBL2;;chr3:48282587..48282603,+!p1@ZNF589!0.68!18.95!ZNF589;;chr1:117602932..117602973,+!p1@TTF2!0.68!16.05!TTF2;;chr9:20622444..20622468,-!p2@MLLT3!0.68!13.71!MLLT3;;chr3:169381420..169381535,-!p1@MECOM!0.68!4.57!MECOM;;chr1:212873162..212873188,-!p3@BATF3!0.68!3.79!BATF3;;chr19:23941680..23941704,-!p1@ZNF681!0.67!12.04!ZNF681;;chr9:117150254..117150271,-!p1@AKNA!0.67!11.26!AKNA;;chr19:45250948..45250998,+!p3@BCL3!0.67!10.25!BCL3;;chr9:2016724..2016752,+!p7@SMARCA2!0.67!7.69!SMARCA2;;chr15:74833584..74833626,+!p1@ARID3B!0.66!9.25!ARID3B;;chr17:46688334..46688385,-!p1@HOXB7!0.66!5.46!HOXB7;;chr2:10091815..10091864,+!p1@GRHL1!0.66!4.90!GRHL1;;chr7:137620684..137620711,-!p4@CREB3L2!0.66!3.57!CREB3L2;;chr18:47807845..47807918,-!p1@MBD1!0.65!70.88!MBD1;;chr2:70142189..70142223,+!p2@MXD1!0.65!28.98!MXD1;;chr7:150102756..150102772,+!p5@ZNF775!0.65!3.45!ZNF775;;chrY:2803415..2803468,+!p1@ZFY!0.65!3.45!ZFY;;chr1:158979686..158979745,+!p1@IFI16!0.64!129.83!IFI16;;chr1:40915725..40915808,+!p1@ZNF643!0.64!11.37!ZNF643;;chr6:15246200..15246214,+!p2@JARID2!0.64!10.48!JARID2;;chr9:20622478..20622525,-!p1@MLLT3!0.63!30.20!MLLT3;;chr8:37553261..37553282,+!p2@ZNF703!0.63!29.42!ZNF703;;chr3:5021191..5021202,+!p3@BHLHE40!0.63!9.92!BHLHE40;;chr1:151032142..151032195,+!p5@MLLT11!0.63!7.02!MLLT11;;chr7:128577972..128578047,+!p1@IRF5!0.63!5.57!IRF5;;chr8:72756267..72756296,-!p4@MSC!0.63!5.13!MSC;;chr7:156803329..156803362,-!p1@MNX1!0.63!3.23!MNX1;;chr3:63953435..63953499,+!p1@ATXN7!0.63!3.23!ATXN7;;chr17:46703436..46703460,-!p7@HOXB9!0.63!3.23!HOXB9;;chr10:124768217..124768228,-!p2@IKZF5!0.63!3.23!IKZF5;;chr4:1873100..1873152,+!p1@WHSC1!0.62!28.86!WHSC1;;chr16:29819446..29819471,+!p9@MAZ!0.62!10.81!MAZ;;chr8:72756023..72756055,-!p6@MSC!0.62!4.12!MSC;;chr11:615570..615721,-!p2@IRF7!0.61!6.69!IRF7;;chr2:63277948..63277974,+!p1@OTX1!0.61!3.12!OTX1;;chr19:20278012..20278034,+!p1@ZNF486!0.60!30.20!ZNF486;;chr4:1873011..1873063,+!p2@WHSC1!0.60!11.81!WHSC1;;chr2:113993052..113993097,-!p2@PAX8!0.60!7.69!PAX8;;chr16:31724618..31724630,+!p2@ZNF720!0.60!6.24!ZNF720;;chr3:141105235..141105307,+!p7@ZBTB38!0.60!3.01!ZBTB38;;chr18:47808120..47808171,-!p2@MBD1!0.59!8.25!MBD1;;chr18:52989031..52989079,-!p2@TCF4!0.59!7.69!TCF4;;chr3:101546827..101546847,+!p2@NFKBIZ!0.59!4.35!NFKBIZ;;chr1:151319318..151319338,-!p3@RFX5!0.59!3.68!RFX5;;chr16:29819403..29819442,+!p5@MAZ!0.58!27.97!MAZ;;chr2:70142232..70142251,+!p1@MXD1!0.58!19.28!MXD1;;chr3:5021268..5021282,+!p4@BHLHE40!0.58!6.46!BHLHE40;;chr4:81104865..81104886,+!p6@PRDM8!0.58!3.12!PRDM8;;chr19:22193706..22193717,-!p2@ZNF208!0.58!2.79!ZNF208;;chr11:19262421..19262455,-!p3@E2F8!0.58!2.79!E2F8;;chr6:135502472..135502489,+!p3@MYB!0.58!2.79!MYB;;chr8:72755987..72756002,-!p7@MSC!0.58!2.79!MSC;;chr3:52008016..52008071,-!p1@ABHD14A-ACY1,p1@ABHD14B,p1@PCBP4!0.57!193.24!PCBP4;;chr6:44233252..44233296,-!p1@NFKBIE!0.57!32.76!NFKBIE;;chr6:31126291..31126399,+!p1@TCF19!0.57!31.76!TCF19;;chr19:21203481..21203504,+!p2@ZNF430!0.57!7.24!ZNF430;;chr5:43067583..43067606,+!p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| ||
|ffid_belonging_in_development=CL:0000134,CL:0000051 | |||
|fonse_cell_line=FF:0100104,FF:0101035 | |fonse_cell_line=FF:0100104,FF:0101035 | ||
|fonse_cell_line_closure=FF:0100104,FF:0101035 | |fonse_cell_line_closure=FF:0100104,FF:0101035 | ||
| Line 36: | Line 43: | ||
|fonse_treatment_closure= | |fonse_treatment_closure= | ||
|has_quality= | |has_quality= | ||
|hg19bam=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.cell_line.hCAGE/adult%2520T-cell%2520leukemia%2520cell%2520line%253aATN-1.CNhs10738.10421-106C7.hg19.nobarcode.bam | |||
|hg19ctss=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.cell_line.hCAGE/adult%2520T-cell%2520leukemia%2520cell%2520line%253aATN-1.CNhs10738.10421-106C7.hg19.ctss.bed.gz | |||
|hg19fasta=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.cell_line.hCAGE/adult%2520T-cell%2520leukemia%2520cell%2520line%253aATN-1.CNhs10738.10421-106C7.hg19.nobarcode.rdna.fa.gz | |||
|hg38bam=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.cell_line.hCAGE/adult%2520T-cell%2520leukemia%2520cell%2520line%253aATN-1.CNhs10738.10421-106C7.hg38.nobarcode.bam | |||
|hg38ctss=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.cell_line.hCAGE/adult%2520T-cell%2520leukemia%2520cell%2520line%253aATN-1.CNhs10738.10421-106C7.hg38.nobarcode.ctss.bed.gz | |||
|id=FF:10421-106C7 | |id=FF:10421-106C7 | ||
|is_a=EFO:0002091;;FF:0000210;;FF:0104049 | |is_a=EFO:0002091;;FF:0000210;;FF:0104049 | ||
|is_obsolete= | |is_obsolete= | ||
|library_id=CNhs10738 | |||
|library_id_phase_based=2:CNhs10738 | |||
|microRNAs= | |||
|microRNAs_nn= | |||
|microRNAs_nonnovel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer/#/human#cage;sample;10421 | |||
|microRNAs_novel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer_novel/#/human#cage;sample;10421 | |||
|name=adult T-cell leukemia cell line:ATN-1 | |name=adult T-cell leukemia cell line:ATN-1 | ||
|namespace=FANTOM5 | |namespace=FANTOM5 | ||
| Line 44: | Line 62: | ||
|profile_cagescan=,,, | |profile_cagescan=,,, | ||
|profile_hcage=CNhs10738,LSID692,release008,COMPLETED | |profile_hcage=CNhs10738,LSID692,release008,COMPLETED | ||
|profile_rnaseq= | |profile_rnaseq= | ||
|profile_srnaseq=,,, | |profile_srnaseq=,,, | ||
|refex=http://refex.dbcls.jp/genelist.php?lang | |||
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| |||
|rna_box=106 | |rna_box=106 | ||
|rna_catalog_number= | |rna_catalog_number= | ||
| Line 58: | Line 79: | ||
|rna_tube_id=106C7 | |rna_tube_id=106C7 | ||
|rna_weight_ug=32.29275 | |rna_weight_ug=32.29275 | ||
|rnaseq_library_id=RDhi10064 | |||
|sample_age=47 | |sample_age=47 | ||
|sample_category=cell lines | |||
|sample_cell_catalog=RCB1440 | |sample_cell_catalog=RCB1440 | ||
|sample_cell_line=ATN-1 | |sample_cell_line=ATN-1 | ||
| Line 80: | Line 103: | ||
|top_motifs=ZNF148:3.5397203404;NFY{A,B,C}:2.64734811131;NFIX:2.38289935844;GFI1:2.37818691604;MYB:1.9460177278;ELF1,2,4:1.66963536601;RORA:1.44016624204;ELK1,4_GABP{A,B1}:1.40995567805;NKX6-1,2:1.24432783427;E2F1..5:1.19699001413;VSX1,2:1.19536363453;FOXA2:1.10076952175;PITX1..3:0.99223944234;STAT1,3:0.989812229249;PBX1:0.980601338606;TEF:0.959172998181;YY1:0.935009568259;POU2F1..3:0.925357609646;ZNF143:0.907781762786;HOX{A6,A7,B6,B7}:0.859712396612;TLX2:0.82518599324;NR1H4:0.815048119673;CRX:0.757646319485;PAX3,7:0.731316729817;NRF1:0.686592091348;NFKB1_REL_RELA:0.658600821771;FOXP1:0.619431484555;RUNX1..3:0.606805760182;FOXP3:0.594043747832;AIRE:0.574949031327;PAX8:0.505135265243;POU3F1..4:0.496693557071;SPI1:0.482184745326;HOXA9_MEIS1:0.481852641675;FOX{F1,F2,J1}:0.478618033181;IRF1,2:0.446752667033;CREB1:0.407617043824;RXR{A,B,G}_{NR1H2,PPAR}dimers:0.400057415034;ATF5_CREB3:0.388739740959;DMAP1_NCOR{1,2}_SMARC:0.379015404526;CUX2:0.366051182698;ETS1,2:0.355144196253;OCT4_SOX2{dimer}:0.315929410923;ONECUT1,2:0.308934077924;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:0.275896240122;HAND1,2:0.273768784928;HOX{A5,B5}:0.173000314345;ESRRA:0.1711133657;FOXN1:0.170491152728;BPTF:0.15856675862;EVI1:0.157538241233;SPIB:0.155626254542;BREu{core}:0.132392201325;ZEB1:0.129736092778;GATA6:0.127101179354;NKX2-2,8:0.113039341402;IRF7:0.101966028061;ATF4:0.0921992518689;FOX{I1,J2}:0.0865060268854;STAT5{A,B}:0.0672997537349;NANOG{mouse}:0.0621301220908;NKX3-2:0.055090493291;POU5F1:0.0491330948362;HOX{A4,D4}:0.0311099209664;GCM1,2:0.0110536425155;NKX3-1:0.00376601298124;CEBPA,B_DDIT3:-0.0332031138261;ZBTB16:-0.0499004925116;ADNP_IRX_SIX_ZHX:-0.0502813936737;NFE2L2:-0.074527789374;RFX2..5_RFXANK_RFXAP:-0.0750707602386;STAT2,4,6:-0.0891666660283;PAX4:-0.103449653941;GFI1B:-0.119359348467;FOSL2:-0.133021800696;NR5A1,2:-0.142104263022;AHR_ARNT_ARNT2:-0.186120358268;LEF1_TCF7_TCF7L1,2:-0.197278227627;PAX2:-0.20769895356;TGIF1:-0.20814798453;PAX6:-0.232516017508;SNAI1..3:-0.232716746274;HNF4A_NR2F1,2:-0.238470410207;SOX{8,9,10}:-0.240669096057;TFDP1:-0.254883314201;FOXO1,3,4:-0.255266094567;MYOD1:-0.259012594912;NFE2:-0.259478830966;HES1:-0.260861399026;FOS_FOS{B,L1}_JUN{B,D}:-0.26321723225;ALX1:-0.26854172952;NANOG:-0.287488958905;IKZF2:-0.295098402822;TOPORS:-0.299646680688;DBP:-0.312951335407;ARID5B:-0.33993166278;SOX17:-0.365322795225;HSF1,2:-0.369431026586;AR:-0.375736660848;POU1F1:-0.376059945739;RXRA_VDR{dimer}:-0.379815235162;HNF1A:-0.393386199102;NKX2-3_NKX2-5:-0.394514010199;JUN:-0.403533830561;SOX2:-0.414653599676;PRRX1,2:-0.419029743391;PPARG:-0.453002619248;LMO2:-0.462574617514;BACH2:-0.469492906728;CDX1,2,4:-0.491321012874;FOX{D1,D2}:-0.494148410355;NFIL3:-0.495782817438;MYFfamily:-0.518298977525;ATF2:-0.554154836308;MAFB:-0.563971946136;FOXM1:-0.593215936448;SMAD1..7,9:-0.604906803601;MEF2{A,B,C,D}:-0.609957954147;RBPJ:-0.612039610263;SP1:-0.615108720259;POU6F1:-0.630051685532;EP300:-0.634331650962;ESR1:-0.63922942569;ZNF384:-0.646850136854;MYBL2:-0.64878739251;TP53:-0.675889873315;NR3C1:-0.686380178291;NKX2-1,4:-0.700432427887;HLF:-0.743467473757;ATF6:-0.753187489533;ZNF423:-0.761610660515;SREBF1,2:-0.767772738236;UFEwm:-0.78428489523;NFE2L1:-0.793726877749;MTF1:-0.826789590213;ZNF238:-0.82786528817;SOX5:-0.854501444607;SRF:-0.85489133221;ZIC1..3:-0.86233152019;PAX5:-0.871333882437;CDC5L:-0.880817669042;RREB1:-0.902556758349;EN1,2:-0.907579121486;TBP:-0.933438580507;XCPE1{core}:-0.941009927813;FOXD3:-0.943922893076;LHX3,4:-0.951045005118;PAX1,9:-0.953003645221;ZBTB6:-0.963969665077;SPZ1:-0.966938358703;RFX1:-0.983329199849;GZF1:-0.991168256102;IKZF1:-1.01685336899;HMGA1,2:-1.02129570479;GTF2A1,2:-1.05636890285;bHLH_family:-1.08971688112;HBP1_HMGB_SSRP1_UBTF:-1.0941957101;PRDM1:-1.12288941814;TBX4,5:-1.13192328686;TFAP4:-1.14750501147;TAL1_TCF{3,4,12}:-1.15414266526;MED-1{core}:-1.17976975314;REST:-1.23447497255;KLF4:-1.25816396065;NFATC1..3:-1.25899620202;FOXQ1:-1.26598261118;TFCP2:-1.29023089;GTF2I:-1.30956730137;TLX1..3_NFIC{dimer}:-1.33167099716;T:-1.35213682117;ZFP161:-1.35827147539;TEAD1:-1.36031856806;GLI1..3:-1.37212758952;MAZ:-1.37995076141;NHLH1,2:-1.39066842827;HMX1:-1.39116034155;PDX1:-1.40910280532;ALX4:-1.41109675129;TFAP2{A,C}:-1.41140699775;MZF1:-1.46444794833;MTE{core}:-1.4740695439;XBP1:-1.50155921889;PATZ1:-1.53891935197;RXR{A,B,G}:-1.54717800834;HIC1:-1.56783060609;TFAP2B:-1.58505288152;FOXL1:-1.59383890221;EBF1:-1.6727365016;GATA4:-1.68687001445;NR6A1:-1.88529946848;EGR1..3:-2.03027478141;HIF1A:-2.22979992131 | |top_motifs=ZNF148:3.5397203404;NFY{A,B,C}:2.64734811131;NFIX:2.38289935844;GFI1:2.37818691604;MYB:1.9460177278;ELF1,2,4:1.66963536601;RORA:1.44016624204;ELK1,4_GABP{A,B1}:1.40995567805;NKX6-1,2:1.24432783427;E2F1..5:1.19699001413;VSX1,2:1.19536363453;FOXA2:1.10076952175;PITX1..3:0.99223944234;STAT1,3:0.989812229249;PBX1:0.980601338606;TEF:0.959172998181;YY1:0.935009568259;POU2F1..3:0.925357609646;ZNF143:0.907781762786;HOX{A6,A7,B6,B7}:0.859712396612;TLX2:0.82518599324;NR1H4:0.815048119673;CRX:0.757646319485;PAX3,7:0.731316729817;NRF1:0.686592091348;NFKB1_REL_RELA:0.658600821771;FOXP1:0.619431484555;RUNX1..3:0.606805760182;FOXP3:0.594043747832;AIRE:0.574949031327;PAX8:0.505135265243;POU3F1..4:0.496693557071;SPI1:0.482184745326;HOXA9_MEIS1:0.481852641675;FOX{F1,F2,J1}:0.478618033181;IRF1,2:0.446752667033;CREB1:0.407617043824;RXR{A,B,G}_{NR1H2,PPAR}dimers:0.400057415034;ATF5_CREB3:0.388739740959;DMAP1_NCOR{1,2}_SMARC:0.379015404526;CUX2:0.366051182698;ETS1,2:0.355144196253;OCT4_SOX2{dimer}:0.315929410923;ONECUT1,2:0.308934077924;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:0.275896240122;HAND1,2:0.273768784928;HOX{A5,B5}:0.173000314345;ESRRA:0.1711133657;FOXN1:0.170491152728;BPTF:0.15856675862;EVI1:0.157538241233;SPIB:0.155626254542;BREu{core}:0.132392201325;ZEB1:0.129736092778;GATA6:0.127101179354;NKX2-2,8:0.113039341402;IRF7:0.101966028061;ATF4:0.0921992518689;FOX{I1,J2}:0.0865060268854;STAT5{A,B}:0.0672997537349;NANOG{mouse}:0.0621301220908;NKX3-2:0.055090493291;POU5F1:0.0491330948362;HOX{A4,D4}:0.0311099209664;GCM1,2:0.0110536425155;NKX3-1:0.00376601298124;CEBPA,B_DDIT3:-0.0332031138261;ZBTB16:-0.0499004925116;ADNP_IRX_SIX_ZHX:-0.0502813936737;NFE2L2:-0.074527789374;RFX2..5_RFXANK_RFXAP:-0.0750707602386;STAT2,4,6:-0.0891666660283;PAX4:-0.103449653941;GFI1B:-0.119359348467;FOSL2:-0.133021800696;NR5A1,2:-0.142104263022;AHR_ARNT_ARNT2:-0.186120358268;LEF1_TCF7_TCF7L1,2:-0.197278227627;PAX2:-0.20769895356;TGIF1:-0.20814798453;PAX6:-0.232516017508;SNAI1..3:-0.232716746274;HNF4A_NR2F1,2:-0.238470410207;SOX{8,9,10}:-0.240669096057;TFDP1:-0.254883314201;FOXO1,3,4:-0.255266094567;MYOD1:-0.259012594912;NFE2:-0.259478830966;HES1:-0.260861399026;FOS_FOS{B,L1}_JUN{B,D}:-0.26321723225;ALX1:-0.26854172952;NANOG:-0.287488958905;IKZF2:-0.295098402822;TOPORS:-0.299646680688;DBP:-0.312951335407;ARID5B:-0.33993166278;SOX17:-0.365322795225;HSF1,2:-0.369431026586;AR:-0.375736660848;POU1F1:-0.376059945739;RXRA_VDR{dimer}:-0.379815235162;HNF1A:-0.393386199102;NKX2-3_NKX2-5:-0.394514010199;JUN:-0.403533830561;SOX2:-0.414653599676;PRRX1,2:-0.419029743391;PPARG:-0.453002619248;LMO2:-0.462574617514;BACH2:-0.469492906728;CDX1,2,4:-0.491321012874;FOX{D1,D2}:-0.494148410355;NFIL3:-0.495782817438;MYFfamily:-0.518298977525;ATF2:-0.554154836308;MAFB:-0.563971946136;FOXM1:-0.593215936448;SMAD1..7,9:-0.604906803601;MEF2{A,B,C,D}:-0.609957954147;RBPJ:-0.612039610263;SP1:-0.615108720259;POU6F1:-0.630051685532;EP300:-0.634331650962;ESR1:-0.63922942569;ZNF384:-0.646850136854;MYBL2:-0.64878739251;TP53:-0.675889873315;NR3C1:-0.686380178291;NKX2-1,4:-0.700432427887;HLF:-0.743467473757;ATF6:-0.753187489533;ZNF423:-0.761610660515;SREBF1,2:-0.767772738236;UFEwm:-0.78428489523;NFE2L1:-0.793726877749;MTF1:-0.826789590213;ZNF238:-0.82786528817;SOX5:-0.854501444607;SRF:-0.85489133221;ZIC1..3:-0.86233152019;PAX5:-0.871333882437;CDC5L:-0.880817669042;RREB1:-0.902556758349;EN1,2:-0.907579121486;TBP:-0.933438580507;XCPE1{core}:-0.941009927813;FOXD3:-0.943922893076;LHX3,4:-0.951045005118;PAX1,9:-0.953003645221;ZBTB6:-0.963969665077;SPZ1:-0.966938358703;RFX1:-0.983329199849;GZF1:-0.991168256102;IKZF1:-1.01685336899;HMGA1,2:-1.02129570479;GTF2A1,2:-1.05636890285;bHLH_family:-1.08971688112;HBP1_HMGB_SSRP1_UBTF:-1.0941957101;PRDM1:-1.12288941814;TBX4,5:-1.13192328686;TFAP4:-1.14750501147;TAL1_TCF{3,4,12}:-1.15414266526;MED-1{core}:-1.17976975314;REST:-1.23447497255;KLF4:-1.25816396065;NFATC1..3:-1.25899620202;FOXQ1:-1.26598261118;TFCP2:-1.29023089;GTF2I:-1.30956730137;TLX1..3_NFIC{dimer}:-1.33167099716;T:-1.35213682117;ZFP161:-1.35827147539;TEAD1:-1.36031856806;GLI1..3:-1.37212758952;MAZ:-1.37995076141;NHLH1,2:-1.39066842827;HMX1:-1.39116034155;PDX1:-1.40910280532;ALX4:-1.41109675129;TFAP2{A,C}:-1.41140699775;MZF1:-1.46444794833;MTE{core}:-1.4740695439;XBP1:-1.50155921889;PATZ1:-1.53891935197;RXR{A,B,G}:-1.54717800834;HIC1:-1.56783060609;TFAP2B:-1.58505288152;FOXL1:-1.59383890221;EBF1:-1.6727365016;GATA4:-1.68687001445;NR6A1:-1.88529946848;EGR1..3:-2.03027478141;HIF1A:-2.22979992131 | ||
|xref= | |xref= | ||
|zenbu_report=https://fantom.gsc.riken.jp/zenbu/reports/#miRNA_expression_atlas_human;search_select_hide=table111:FF:10421-106C7;search_select_hide=table117:FF:10421-106C7 | |||
}} | }} | ||
Latest revision as of 14:00, 3 June 2020
| Name: | adult T-cell leukemia cell line:ATN-1 |
|---|---|
| Species: | Human (Homo sapiens) |
| Library ID: | CNhs10738 |
| Sample type: | cell lines |
| Genomic View: | UCSC |
| RefEX: | Specific genes |
| CAGEd-oPOSSUM: | link |
| ZENBU report : | link |
| Additional information | ||||||||||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
Sample information
RNA information
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| CAGE Accession numbers | ||||||||||||||||||||||||||||||||||||||||||||||
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| Download raw sequence, BAM & CTSS | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
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| RNA-Seq Accession numbers | ||||||||||||||||||||||||||||||||
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Relative expression to median (log10)
Transcription factors with enriched expression in this sampleRanked list of transcription factor promoter expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.
Co-expression clusters with enriched expression in this sampleRanked list of co-expression cluster expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed. <br>Analyst:NA <br><br>link to dataset.<br>data
Repeat families with enriched expression in this sample<b>Summary:</b>Ranked list of repeat family expression in this sample relative tothe median expression in the FANTOM5 collection is shown. Value is log10transformed.<br><b>Analyst:</b>NA<br><br>link to dataset.<br>data
TFBS(DNA)motifs over-represented in proximal region of promoters active in this sample
JASPAR motifs<b>Summary:</b>Association of JASPAR motif to the promoter expression in thissample. Pearson's correlation between the number of TFBSs estimated byusing the position-weight matrix for each promoter and its expression isexpressed as Z-score by taking the ones based on random position-weightmatrix, and the tail probability of the normal distribution correspondingto the Z-score is taken as the resulting P-value. Lower P-value indicatesmore (non-random) association of the motif to promoter expression<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data
library id: CNhs10738
FANTOM5 phase1 novel unique motifs<b>Summary:</b>Association of the 169 novel and unique motifs discovered in FANTOM5 phase1 in this sample. Among the de-novo motifs discovered by DMF, HOMER,ChIPMunk, and ScanAll, only novel motifs are selected after comparison with known motif sets, and their clustering based on MACRO-APE resulted in169 novel and unique motifs. Their association to the promoter expression is evaluated in the same way to the JASPAR motif above<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data
library id: CNhs10738
| Novel motif | Logo | P-value |
|---|---|---|
| 1 | 1 | 0.0189 |
| 10 | 10 | 0.0206 |
| 100 | 100 | 0.52 |
| 101 | 101 | 0.0431 |
| 102 | 102 | 0.35 |
| 103 | 103 | 0.33 |
| 104 | 104 | 0.609 |
| 105 | 105 | 0.349 |
| 106 | 106 | 0.677 |
| 107 | 107 | 0.584 |
| 108 | 108 | 0.749 |
| 109 | 109 | 0.00216 |
| 11 | 11 | 0.0158 |
| 110 | 110 | 0.108 |
| 111 | 111 | 0.454 |
| 112 | 112 | 0.248 |
| 113 | 113 | 0.768 |
| 114 | 114 | 0.598 |
| 115 | 115 | 0.237 |
| 116 | 116 | 0.95 |
| 117 | 117 | 0.0095 |
| 118 | 118 | 0.873 |
| 119 | 119 | 0.332 |
| 12 | 12 | 0.815 |
| 120 | 120 | 0.422 |
| 121 | 121 | 0.361 |
| 122 | 122 | 0.43 |
| 123 | 123 | 0.0474 |
| 124 | 124 | 0.0118 |
| 125 | 125 | 0.405 |
| 126 | 126 | 0.235 |
| 127 | 127 | 0.464 |
| 128 | 128 | 0.504 |
| 129 | 129 | 0.577 |
| 13 | 13 | 0.0574 |
| 130 | 130 | 0.258 |
| 131 | 131 | 0.491 |
| 132 | 132 | 0.3 |
| 133 | 133 | 0.275 |
| 134 | 134 | 0.721 |
| 135 | 135 | 0.96 |
| 136 | 136 | 0.178 |
| 137 | 137 | 0.784 |
| 138 | 138 | 0.888 |
| 139 | 139 | 0.413 |
| 14 | 14 | 0.653 |
| 140 | 140 | 0.233 |
| 141 | 141 | 0.711 |
| 142 | 142 | 0.739 |
| 143 | 143 | 0.039 |
| 144 | 144 | 0.854 |
| 145 | 145 | 0.425 |
| 146 | 146 | 0.283 |
| 147 | 147 | 0.156 |
| 148 | 148 | 0.271 |
| 149 | 149 | 0.592 |
| 15 | 15 | 0.106 |
| 150 | 150 | 0.31 |
| 151 | 151 | 0.832 |
| 152 | 152 | 0.223 |
| 153 | 153 | 0.436 |
| 154 | 154 | 0.888 |
| 155 | 155 | 0.205 |
| 156 | 156 | 0.446 |
| 157 | 157 | 0.935 |
| 158 | 158 | 0.299 |
| 159 | 159 | 0.583 |
| 16 | 16 | 0.862 |
| 160 | 160 | 0.747 |
| 161 | 161 | 0.401 |
| 162 | 162 | 0.715 |
| 163 | 163 | 0.901 |
| 164 | 164 | 0.0391 |
| 165 | 165 | 0.786 |
| 166 | 166 | 0.211 |
| 167 | 167 | 0.188 |
| 168 | 168 | 0.765 |
| 169 | 169 | 0.281 |
| 17 | 17 | 0.537 |
| 18 | 18 | 0.543 |
| 19 | 19 | 0.891 |
| 2 | 2 | 0.629 |
| 20 | 20 | 0.622 |
| 21 | 21 | 0.555 |
| 22 | 22 | 0.911 |
| 23 | 23 | 0.545 |
| 24 | 24 | 0.315 |
| 25 | 25 | 0.205 |
| 26 | 26 | 0.0392 |
| 27 | 27 | 0.64 |
| 28 | 28 | 0.317 |
| 29 | 29 | 0.0476 |
| 3 | 3 | 0.0822 |
| 30 | 30 | 0.193 |
| 31 | 31 | 0.736 |
| 32 | 32 | 0.432 |
| 33 | 33 | 0.351 |
| 34 | 34 | 0.515 |
| 35 | 35 | 0.464 |
| 36 | 36 | 0.0236 |
| 37 | 37 | 0.29 |
| 38 | 38 | 0.454 |
| 39 | 39 | 0.909 |
| 4 | 4 | 0.0128 |
| 40 | 40 | 0.0514 |
| 41 | 41 | 0.784 |
| 42 | 42 | 0.0221 |
| 43 | 43 | 0.202 |
| 44 | 44 | 0.561 |
| 45 | 45 | 0.982 |
| 46 | 46 | 0.199 |
| 47 | 47 | 0.0132 |
| 48 | 48 | 0.062 |
| 49 | 49 | 0.0141 |
| 5 | 5 | 0.506 |
| 50 | 50 | 0.609 |
| 51 | 51 | 0.784 |
| 52 | 52 | 0.0585 |
| 53 | 53 | 0.154 |
| 54 | 54 | 0.904 |
| 55 | 55 | 0.751 |
| 56 | 56 | 0.394 |
| 57 | 57 | 0.343 |
| 58 | 58 | 0.164 |
| 59 | 59 | 0.864 |
| 6 | 6 | 0.753 |
| 60 | 60 | 0.987 |
| 61 | 61 | 0.21 |
| 62 | 62 | 0.162 |
| 63 | 63 | 0.744 |
| 64 | 64 | 0.197 |
| 65 | 65 | 0.672 |
| 66 | 66 | 1.20976e-9 |
| 67 | 67 | 0.46 |
| 68 | 68 | 0.415 |
| 69 | 69 | 0.718 |
| 7 | 7 | 0.0941 |
| 70 | 70 | 0.617 |
| 71 | 71 | 0.0364 |
| 72 | 72 | 0.763 |
| 73 | 73 | 0.735 |
| 74 | 74 | 0.761 |
| 75 | 75 | 0.0219 |
| 76 | 76 | 0.764 |
| 77 | 77 | 0.903 |
| 78 | 78 | 0.276 |
| 79 | 79 | 0.34 |
| 8 | 8 | 0.519 |
| 80 | 80 | 0.661 |
| 81 | 81 | 0.764 |
| 82 | 82 | 0.849 |
| 83 | 83 | 0.00519 |
| 84 | 84 | 0.666 |
| 85 | 85 | 0.847 |
| 86 | 86 | 0.0957 |
| 87 | 87 | 0.04 |
| 88 | 88 | 0.82 |
| 89 | 89 | 0.233 |
| 9 | 9 | 0.992 |
| 90 | 90 | 0.129 |
| 91 | 91 | 0.104 |
| 92 | 92 | 0.96 |
| 93 | 93 | 0.812 |
| 94 | 94 | 0.193 |
| 95 | 95 | 0.0102 |
| 96 | 96 | 0.191 |
| 97 | 97 | 0.263 |
| 98 | 98 | 0.674 |
| 99 | 99 | 0.638 |
de novo motifs identified by HOMER in promoters active in this sample<b>Summary:</b>The result of HOMER in this sample is shown.<br><b>Analyst:</b>NA <br>
library id: CNhs10738
FANTOM5 (FF) ontology
Direct parent terms
is_a relathionship
EFO:0002091 biological replicate
FF:0000210 human sample
FF:0104049 adult T-cell lymphoma cell line sample
Ancestor terms (non development)<b>Summary:</b>Connected ontology terms with is_a, part_of or located_in relationship <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source data<br>data
CL: Cell type
0000000 (cell), 0000000 (cell)
0000003 (native cell)
0000988 (hematopoietic cell)
0000548 (animal cell)
0002371 (somatic cell)
0000542 (lymphocyte)
0000219 (motile cell)
0000738 (leukocyte)
0002087 (nongranular leukocyte)
0002242 (nucleate cell)
0000255 (eukaryotic cell)
0000084 (T cell)
DOID: Disease
4 (disease)
0050686 (organ system cancer)
162 (cancer)
2531 (hematologic cancer)
0060058 (lymphoma)
14566 (disease of cellular proliferation)
0060083 (immune system cancer)
1240 (leukemia)
FF: FANTOM5
0000102 (sample by type)
0000003 (cell line sample)
0000210 (human sample)
0000101 (sample by species)
0000001 (sample)
0100737 (leukemia cell line sample)
0101035 (hematopoietic cell line sample)
0100104 (lymphoma cell line sample)
0103212 (T-lymphoma cell line sample)
0104049 (adult T-cell lymphoma cell line sample)
Ancestor terms (development)<b>Summary:</b>Connected ontology terms with develops_from, derives_from or preceded_by relationship <br><b>Analyst:</b> Hideya Kawaji <br><br>link to source data<br>data
CL:0000134 (mesenchymal cell)
CL:0000051 (common lymphoid progenitor)
