FF:11883-125D2: Difference between revisions

Latest revision as of 18:26, 4 June 2020

Name:	CD14+ monocytes - mock treated, donor3
Species:	Human (Homo sapiens)
Library ID:	CNhs13491
Sample type:	primary cells
Genomic View:	UCSC
RefEX:	Specific genes
FANTOM CAT:	1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11
CAGEd-oPOSSUM:	link
ZENBU report :	link

Additional information

Sample information

strain	NA
tissue	NA
dev stage	NA
sex	female
age	21
cell type	monocyte
cell line	NA
company	NA
collaboration	Christine Wells (University of Queensland)
External link for information	[{{{sample_info_link}}} {{{sample_info_link}}}]

RNA information

lot number	D5-4
catalog number	NA
sample type	total RNA
extraction protocol (Details)	OP-RNA-extraction-totalRNA-miRNeasy_Mini-v1.0

CAGE Accession numbers

Method		Sample accession id
CAGE		SAMD00004822

Library accession numbers

Library id		Method		Exp. accession id		Run accession id
CNhs13491		CAGE		DRX008134		DRR009006

Accession ID Hg19

Library id		BAM		CTSS
CNhs13491		DRZ000431		DRZ001816

Accession ID Hg38

Library id		BAM		CTSS
CNhs13491		DRZ011781		DRZ013166

Download raw sequence, BAM & CTSS

Hg19

Fasta	BAM	CTSS
download	download	donwload

Hg38

BAM	CTSS
download	donwload

Relative expression to median (log10)

Transcription factors with enriched expression in this sampleRanked list of transcription factor promoter expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.

Co-expression clusters with enriched expression in this sampleRanked list of co-expression cluster expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed. Analyst:NA link to dataset. data

Coexpression cluster	score
C0-CD14-Eosinophils-Neutrophils-Basophils-CD34-immature-Peripheral	0.0943
C1-testis-epididymis-embryonic-medulla-pituitary-trachea-caudate	0
C10-occipital-temporal-parietal-brain-duodenum-Neurons-Neural	0
C100-rhabdomyosarcoma-gastric-pineal-Wilms-cervical-mesodermal-endometrial	0
C101-small-cerebellum-maxillary-colon-parietal-epididymis-merkel	0
C102-neuroblastoma-testicular-pituitary-carcinosarcoma-rectum-acantholytic-iPS	0
C103-CD4-CD8-Natural-Peripheral-Whole-Neutrophils-Basophils	0
C104-Mast-Basophils-immature-CD14-CD34-eye-Natural	0
C105-heart-skeletal-occipital-hippocampus-acute-Sebocyte-penis	-0.122
C106-Hep2-epitheloid-placenta-cervical-rectal-anaplastic-glassy	0
C107-Neutrophils-CD14-Eosinophils-Monocytederived-Whole-Peripheral-blood	0.293
C108-breast-hepatoblastoma-MCF7-parotid-salivary-submaxillary-prostate	0
C109-Reticulocytes-non-acute-Hodgkin-Burkitt-retinoblastoma-lymphoma	-0.471
C11-cerebellum-medulla-pons-parietal-occipital-middle-medial	0
C110-leukemia-chronic-Eosinophils-acute-Whole-CD34-Lymphatic	0
C111-medulla-lung-trachea-testis-caudate-epididymis-throat	0
C112-gastric-pancreas-temporal-duodenum-small-extraskeletal-adrenal	0
C113-thyroid-throat-lung-lymph-small-colon-trachea	0
C114-teratocarcinoma-medulloblastoma-carcinosarcoma-iPS-anaplastic-acute-neuroblastoma	0
C115-pituitary-Neural-caudate-putamen-amygdala-medulla-hippocampus	0
C116-myeloma-xeroderma-tonsil-CD19-spleen-lymph-trachea	0
C117-serous-clear-kidney-neuroectodermal-mesothelioma-endometrial-Intestinal	0
C118-cerebellum-parietal-occipital-medial-middle-frontal-insula	0
C119-CD4-CD8-Natural-Neutrophils-CD14-Peripheral-CD19	0.0943
C12-Mast-Basophils-immature-chorionic-mature-CD14-Eosinophils	0
C120-immature-salivary-tongue-skin-cervical-CD14-CD34	0
C121-NK-Natural-CD8-CD4-anaplastic-chronic-B	0
C122-chronic-Reticulocytes-skeletal-leukemia-acute-colon-Tracheal	0
C123-CD19-Natural-CD8-CD4-CD14-Peripheral-Basophils	0
C124-small-temporal-duodenum-colon-gall-signet-Hepatocyte	0
C125-mucinous-alveolar-mesothelioma-Smooth-lung-CD14-Nucleus	0
C126-gastrointestinal-argyrophil-smallcell-merkel-bile-insula-brain	0
C127-maxillary-small-hepatoblastoma-hepatocellular-alveolar-colon-argyrophil	0
C128-testicular-choriocarcinoma-H9-teratocarcinoma-pancreatic-iPS-HES3GFP	0
C129-liver-Hepatocyte-colon-duodenum-temporal-testicular-small	0
C13-Neutrophils-Eosinophils-CD14-Monocytederived-Whole-Peripheral-CD4	0.172
C130-iPS-HES3GFP-H9-teratocarcinoma-testicular-colon-Alveolar	0
C131-lung-trachea-Alveolar-thyroid-umbilical-throat-skin	0
C132-acute-small-Dendritic-Macrophage-CD14-Neutrophils-Monocytederived	0
C133-signet-gall-small-kidney-colon-ductal-adenocarcinoma	0
C134-skeletal-diaphragm-tongue-throat-Skeletal-skin-penis	0
C135-neuroblastoma-retinoblastoma-carcinoid-choriocarcinoma-testicular-acute-rectum	0
C136-Wilms-extraskeletal-anaplastic-rhabdomyosarcoma-cholangiocellular-nonsmall-neuroectodermal	0
C137-large-ductal-melanoma-cervical-Endothelial-Smooth-chronic	0
C138-diffuse-Burkitt-lymphangiectasia-lymphoma-acute-CD19-pineal	0
C139-astrocytoma-skin-salivary-gall-serous-Mallassezderived-renal	0
C14-Whole-blood-Reticulocytes-liver-Neutrophils-Eosinophils-spleen	0
C140-Renal-Endothelial-Hepatic-Lymphatic-heart-lung-spleen	0
C141-Hodgkin-acute-thymus-chronic-vein-CD4-B	0
C142-Preadipocyte-Fibroblast-hepatic-Ewing-Adipocyte-Olfactory-Hair	0
C143-Monocytederived-CD14-Macrophage-Dendritic-Basophils-CD14CD16-Osteoblast	0.678
C144-CD4-tonsil-NK-appendix-CD8-splenic-mycosis	0
C145-neuroblastoma-peripheral-neuroectodermal-neuroepithelioma-carcinoid-adult-extraskeletal	0
C146-lymphangiectasia-lymphoma-gall-lymph-tonsil-gastric-transitionalcell	0
C147-Neutrophils-Eosinophils-CD4-CD14-CD8-Natural-Peripheral	0.0943
C148-kidney-small-epididymis-pancreas-serous-duodenum-temporal	0
C149-occipital-medial-brain-amygdala-parietal-cerebral-cerebellum	0
C15-anaplastic-small-skeletal-neuroblastoma-parietal-temporal-tongue	0
C150-merkel-carcinoid-nonsmall-gastrointestinal-argyrophil-pineal-small	0
C151-CD14-Natural-Basophils-CD8-Eosinophils-CD4-Mast	0.202
C152-peripheral-neuroectodermal-neuroepithelioma-neuroblastoma-testicular-carcinoid-lung	0
C153-rhabdomyosarcoma-liposarcoma-pancreatic-somatostatinoma-Reticulocytes-lymphoma-testicular	0
C154-adenocarcinoma-Mesenchymal-Cardiac-small-sacrococcigeal-Smooth-Prostate	0
C155-pituitary-placenta-nonsmall-cervical-smallcell-choriocarcinoma-epitheloid	0
C156-plasma-splenic-hereditary-B-large-xeroderma-b	0
C157-testicular-H9-testis-iPS-teratocarcinoma-colon-trachea	0
C158-adrenal-gastric-temporal-parietal-duodenum-caudate-putamen	0
C159-choriocarcinoma-pancreatic-placenta-chorionic-testicular-bronchioalveolar-seminal	0
C16-medial-amygdala-occipital-parietal-olfactory-putamen-brain	0
C160-medulla-Hepatocyte-retina-corpus-liver-pineal-cerebral	0
C161-mesothelioma-Mesothelial-acute-mesenchymal-extraskeletal-renal-placenta	0
C162-spinal-locus-medulla-substantia-thalamus-globus-diencephalon	0
C163-Skeletal-skeletal-Pericytes-Hepatic-rhabdomyosarcoma-throat-mesenchymal	0
C164-signet-corpus-optic-mucinous-substantia-salivary-choriocarcinoma	0
C165-epithelioid-Adipocyte-mesothelioma-myxofibrosarcoma-lung-gastric-Mesothelial	0
C166-Macrophage-Monocytederived-Dendritic-adipose-lymph-CD14-lung	0
C167-Basophils-Mast-Eosinophils-Neutrophils-Peripheral-Whole-CD4	0
C168-Mast-CD14-immature-Basophils-Eosinophils-CD34-Peripheral	0.172
C169-hereditary-adult-gall-lymphangiectasia-chronic-b-choriocarcinoma	0
C17-Mast-CD14-Monocytederived-Lymphatic-Smooth-mesenchymal-Macrophage	0
C170-epitheloid-cervical-Hep2-keratoacanthoma-adult-neuroblastoma-signet	0
C171-merkel-neuroblastoma-pineal-retinoblastoma-carcinoid-small-eye	0
C172-chorionic-skeletal-tongue-amniotic-liver-gastrointestinal-Pericytes	0
C173-Adipocyte-mature-skin-left-Hepatocyte-Osteoblast-adipose	0
C174-CD14-Neutrophils-Smooth-mesothelioma-embryonic-Monocytederived-Eosinophils	0
C175-Eosinophils-Neutrophils-CD4-Basophils-CD19-CD8-Natural	0.393
C176-Eosinophils-Neutrophils-Mast-CD14-CD4-Basophils-CD19	0.396
C177-melanoma-Melanocyte-mesenchymal-retina-Mallassezderived-Gingival-squamous	0
C178-spleen-liver-Hepatocyte-b-lymph-vein-thymus	0
C179-CD19-Peripheral-lymphoma-blood-lymph-spleen-tonsil	0
C18-CD4-CD8-thymus-Whole-Peripheral-Natural-blood	0
C180-skeletal-heart-Hepatocyte-acute-occipital-hippocampus-middle	-0.0997
C181-liposarcoma-somatostatinoma-neuroblastoma-mesothelioma-nonsmall-small-Alveolar	0
C182-renal-mature-mesothelioma-lung-Mammary-Adipocyte-acute	0
C183-acute-non-CD34-diffuse-CD133-myeloma-Burkitt	0
C184-somatostatinoma-smallcell-nonsmall-small-gastrointestinal-pineal-thyroid	0
C185-small-adrenal-gastric-Mesenchymal-acute-HES3GFP-testis	0
C186-squamous-papillotubular-large-Tracheal-oral-Small-epidermoid	0
C187-migratory-immature-Dendritic-CD19-CD14-Monocytederived-Macrophage	0.666
C188-left-heart-tongue-skeletal-Skeletal-diaphragm-throat	0
C189-b-splenic-tonsil-CD19-lymph-appendix-spleen	0
C19-embryonic-testis-cord-chronic-CD14-NK-mesothelioma	0
C190-colon-small-rectum-duodenum-appendix-temporal-oral	0
C191-leiomyoblastoma-Mast-parietal-acute-bone-neuroepithelioma-embryonic	0
C192-Neutrophils-CD14-Peripheral-Eosinophils-CD8-Natural-CD4	0.124
C193-Mesenchymal-Adipocyte-mature-Cardiac-heart-CD14CD16-CD14	0
C194-MCF7-breast-prostate-Intestinal-diffuse-Wilms-Alveolar	0
C195-Small-Gingival-Bronchial-Smooth-mesenchymal-Urothelial-Tracheal	0
C196-testicular-iPS-H9-teratocarcinoma-HES3GFP-choriocarcinoma-endometrial	0
C197-tongue-esophagus-tonsil-salivary-cervix-nasal-Gingival	0
C198-Mesenchymal-Hair-Hepatic-Fibroblast-Smooth-tenocyte-Pericytes	0
C199-glioblastoma-B-osteosarcoma-Fibroblast-heart-rhabdomyosarcoma-myxofibrosarcoma	0
C2-Eosinophils-Neutrophils-CD14-Whole-Basophils-Peripheral-Mast	0.237
C20-heart-left-skeletal-diaphragm-tongue-umbilical-throat	0
C200-seminal-Cardiac-Smooth-Hair-submaxillary-Neutrophils-mixed	0.18
C201-colon-small-adenocarcinoma-duodenum-temporal-signet-gall	0
C202-salivary-skin-penis-tongue-uterus-cervical-immature	0
C203-acute-NK-chronic-CD133-lymphoma-immature-Dendritic	0
C204-Smooth-nasal-CD4-CD19-CD8-CD14-CD34	0
C205-mycosis-cord-hairy-xeroderma-CD4-B-b	0
C206-melanoma-somatostatinoma-nonsmall-small-neuroblastoma-smallcell-pituitary	0
C207-Corneal-Keratinocyte-Esophageal-Mammary-Bronchial-Urothelial-Sebocyte	0
C208-skin-amniotic-papillotubular-salivary-umbilical-Alveolar-serous	0
C209-acute-myelodysplastic-CD34-granulocyte-CD133-liver-spleen	0
C21-cord-mycosis-hairy-xeroderma-adult-CD4-anaplastic	0
C210-Burkitt-lymphoma-appendix-acute-diffuse-CD19-tonsil	0
C211-small-Hepatocyte-liver-colon-temporal-duodenum-kidney	0
C212-chronic-acute-Whole-Reticulocytes-leukemia-blood-CD34	0
C213-CD14-Natural-CD8-CD4-Basophils-Eosinophils-Peripheral	0.0943
C214-Neurons-Neural-duodenum-temporal-occipital-parietal-brain	0
C215-chronic-acute-peripheral-Hepatocyte-osteosarcoma-NK-immature	0
C216-osteosarcoma-Smooth-Mesenchymal-large-neuroectodermal-acute-CD34	0
C217-carcinoid-neuroectodermal-mature-mesodermal-colon-acute-occipital	0
C218-tonsil-lymph-CD19-spleen-colon-appendix-salivary	0
C219-nasal-Basophils-amniotic-Melanocyte-CD14-Osteoblast-duodenum	0
C22-CD4-CD8-Natural-Basophils-CD14-Peripheral-CD19	0
C220-Adipocyte-mature-left-breast-skin-liver-adipose	0
C221-alveolar-Osteoblast-Myoblast-mesenchymal-liposarcoma-Smooth-hepatocellular	0
C222-Melanocyte-Tracheal-Neutrophils-seminal-Smooth-Hair-Chondrocyte	0.074
C223-Chondrocyte-basal-renal-Fibroblast-Smooth-spindle-Synoviocyte	0
C224-clear-serous-pleomorphic-choriocarcinoma-mesothelioma-amniotic-renal	0
C225-ductal-alveolar-giant-prostate-salivary-squamous-Tracheal	0
C226-Corneal-Keratinocyte-Esophageal-Urothelial-Mammary-Bronchial-Tracheal	0
C227-chorionic-amniotic-Mesenchymal-Placental-gastric-diaphragm-tongue	0
C228-colon-Intestinal-Prostate-hepatoblastoma-hepatocellular-testis-adult	0
C229-Mesenchymal-CD4-Melanocyte-acute-skeletal-left-heart	0
C23-CD4-CD8-Natural-Peripheral-Basophils-CD19-CD14	0
C230-aorta-normal-heart-penis-osteosarcoma-basal-lung	0
C231-Mesothelial-mesenchymal-mesothelioma-Fibroblast-Preadipocyte-leiomyoma-mycosis	0
C232-teratocarcinoma-HES3GFP-H9-iPS-testicular-neuroblastoma-cerebellum	0
C233-uterus-cervix-ovary-epididymis-colon-rectum-MCF7	0
C234-oral-epidermoid-malignant-cervical-ductal-lung-keratoacanthoma	0
C235-Intestinal-Prostate-liver-colon-small-kidney-pancreas	0
C236-CD14-Neutrophils-Monocytederived-renal-Eosinophils-testis-mesothelioma	0.237
C237-acute-breast-testicular-hepatoblastoma-chronic-argyrophil-Bronchial	0
C238-stomach-gall-breast-duodenum-temporal-MCF7-smallcell	0
C239-CD4-lymphangiectasia-CD8-NK-mycosis-Renal-hairy	0
C24-pineal-eye-retina-retinoblastoma-medulloblastoma-small-cerebral	0
C240-Adipocyte-Preadipocyte-Osteoblast-Chondrocyte-tenocyte-Synoviocyte-mesenchymal	0
C241-Reticulocytes-chronic-Tracheal-Hodgkin-Endothelial-Hair-thymus	-0.989
C242-acute-Chondrocyte-myelodysplastic-granulocyte-biphenotypic-Fibroblast-stomach	0
C243-Chondrocyte-trachea-Synoviocyte-mesodermal-renal-Fibroblast-Ewing	0
C244-CD14-Monocytederived-Hepatocyte-heart-Neutrophils-acute-Macrophage	0.172
C245-prostate-penis-salivary-esophagus-kidney-Neutrophils-Pancreatic	0
C246-Neutrophils-Eosinophils-Whole-CD14-CD14CD16-Basophils-migratory	0.915
C247-pons-locus-medulla-spinal-paracentral-medial-occipital	0
C248-iPS-Aortic-Hep2-amygdala-acute-medial-Myoblast	0.592
C249-nonsmall-small-smallcell-occipital-somatostatinoma-maxillary-medial	0
C25-small-colon-temporal-duodenum-liver-Hepatocyte-gall	0
C250-Mast-Neutrophils-CD14-Eosinophils-CD8-Peripheral-CD4	0.308
C251-gall-tonsil-trachea-CD14-salivary-throat-tongue	0
C252-hepatic-Olfactory-sacrococcigeal-leiomyoma-normal-Synoviocyte-glioblastoma	0
C253-spleen-rhabdomyosarcoma-Hepatocyte-small-uterus-liver-rectum	0
C254-prostate-rhabdomyosarcoma-seminal-Fibroblast-transitionalcell-Smooth-Iris	0
C255-Wilms-leiomyoblastoma-kidney-adrenal-MCF7-epithelioid-Mast	0
C256-occipital-caudate-amygdala-medial-thalamus-hippocampus-medulla	0
C257-pineal-insula-frontal-occipital-temporal-medial-paracentral	0
C258-hepatoblastoma-hepatocellular-signet-colon-Intestinal-Prostate-gastric	0
C259-Preadipocyte-Adipocyte-Fibroblast-Chondrocyte-tenocyte-normal-Ewing	0
C26-Eosinophils-Neutrophils-CD14-CD14CD16-Basophils-Monocytederived-Whole	0.815
C260-acute-chronic-Natural-NK-Basophils-biphenotypic-blood	0
C261-locus-medial-parietal-pons-diencephalon-olfactory-spinal	0
C262-breast-MCF7-skeletal-Reticulocytes-mucinous-hepatoblastoma-Wilms	0
C263-cervical-keratoacanthoma-tongue-skin-esophagus-throat-tonsil	0
C264-giant-keratoacanthoma-colon-fibrosarcoma-HES3GFP-Hep2-acute	0
C265-CD4-Eosinophils-CD14-Natural-CD19-Basophils-CD8	0.324
C266-acute-chronic-leukemia-small-choriocarcinoma-hepatoma-Mast	0
C267-pancreatic-placenta-choriocarcinoma-testicular-teratocarcinoma-chorionic-clear	0
C268-Mallassezderived-Urothelial-Gingival-Small-Bronchial-Tracheal-Prostate	0
C269-Basophils-Mast-Eosinophils-mature-CD14-chorionic-CD4	0.0943
C27-pancreas-temporal-duodenum-salivary-ductus-umbilical-lung	0
C270-CD4-Fibroblast-acute-iPS-Aortic-CD34-Smooth	0.426
C271-pineal-spinal-locus-globus-medulla-thalamus-cerebellum	0
C272-CD19-CD4-CD8-Whole-Peripheral-lymph-tonsil	0
C273-Neutrophils-CD14-Eosinophils-Monocytederived-CD4-Natural-Mast	0.345
C274-CD14-Mast-immature-Basophils-mature-vagina-Hepatocyte	0.643
C275-pons-medulla-cerebellum-locus-thalamus-diencephalon-spinal	0
C276-mesothelioma-kidney-renal-small-clear-cerebellum-Renal	0
C277-mesothelioma-epithelioid-thyroid-extraskeletal-alveolar-glioblastoma-adenocarcinoma	0
C278-amygdala-hippocampus-insula-medial-putamen-temporal-olfactory	0
C279-parietal-cerebellum-occipital-temporal-middle-duodenum-medial	0
C28-thymus-acute-vein-Hodgkin-chronic-throat-Dendritic	0
C280-Mast-Natural-CD19-CD8-Eosinophils-CD34-CD4	0.237
C281-Hodgkin-Reticulocytes-chronic-NK-acute-retinoblastoma-small	-0.684
C282-acute-B-tonsil-CD19-submaxillary-lymph-throat	0
C283-tenocyte-Chondrocyte-mesenchymal-Macrophage-pleomorphic-Synoviocyte-cholangiocellular	0
C284-parietal-occipital-medial-temporal-olfactory-locus-hippocampus	0
C285-cervical-Hep2-small-colon-temporal-duodenum-bronchogenic	0
C286-cerebellum-occipital-optic-parietal-globus-caudate-medial	0
C287-Hepatocyte-Chondrocyte-Adipocyte-Synoviocyte-liver-tenocyte-mesenchymal	0
C288-Chondrocyte-Renal-Pericytes-Fibroblast-aorta-Smooth-Meningeal	0
C289-chorionic-skeletal-heart-Mast-amniotic-granulosa-left	0
C29-mature-adipose-Adipocyte-breast-Lymphatic-vein-heart	0
C290-Eosinophils-CD14-Basophils-Mast-CD4-CD8-immature	0.494
C291-spinal-substantia-retina-medulla-tongue-skeletal-trachea	0
C292-Mesenchymal-skin-umbilical-Adipocyte-mesenchymal-Chondrocyte-skeletal	0
C293-CD14-CD14CD16-Basophils-Peripheral-immature-Eosinophils-CD34	0.172
C294-CD14-Macrophage-Monocytederived-CD14CD16-Neutrophils-Basophils-Peripheral	0.93
C295-Fibroblast-Smooth-Myoblast-Chondrocyte-hepatic-Synoviocyte-Preadipocyte	0.295
C296-gall-small-mesothelioma-acute-bronchioalveolar-epidermoid-mixed	0
C297-Eosinophils-CD4-Basophils-Natural-Neutrophils-CD8-Peripheral	0.0943
C298-small-optic-substantia-thalamus-diencephalon-globus-occipital	0
C299-CD14CD16-Eosinophils-Neutrophils-CD14-Whole-Basophils-blood	0.72
C3-occipital-temporal-insula-medial-postcentral-frontal-amygdala	0
C30-thyroid-throat-mesothelioma-mucinous-trachea-chorionic-mesenchymal	0
C300-CD4-CD8-NK-Natural-blood-mycosis-Basophils	0
C301-Smooth-mesenchymal-Endothelial-Hepatic-basal-hepatic-chorionic	0.0408
C302-acute-peripheral-Neutrophils-NK-myelodysplastic-CD34-carcinoid	0
C303-CD14-Basophils-Peripheral-Eosinophils-CD14CD16-Neutrophils-Whole	0.0943
C305-heart-skeletal-smooth-left-bladder-penis-esophagus	0
C31-skeletal-tongue-diaphragm-throat-penis-skin-trachea	0
C32-middle-occipital-parietal-hippocampus-amygdala-medial-olfactory	0
C33-Reticulocytes-liver-Whole-blood-chronic-acute-spleen	0
C34-placenta-chorionic-choriocarcinoma-mesothelioma-Wilms-Smooth-bile	0
C35-caudate-putamen-diencephalon-nucleus-globus-thalamus-insula	0
C36-B-b-splenic-plasma-xeroderma-adrenal-Burkitt	0
C37-salivary-submaxillary-parotid-seminal-tongue-ductus-trachea	0
C38-extraskeletal-rhabdomyosarcoma-adrenal-rectal-mesothelioma-lung-Wilms	0
C39-epididymis-ductus-seminal-testis-acute-thyroid-CD133	0
C4-optic-corpus-substantia-medulla-spinal-thalamus-globus	0
C40-eye-retina-Lens-pineal-tongue-retinoblastoma-small	0
C41-retina-eye-medulla-Retinal-medulloblastoma-kidney-pineal	0
C42-small-lung-maxillary-pharyngeal-Mesenchymal-Wilms-colon	0
C43-ductus-seminal-duodenum-temporal-gall-prostate-bladder	0
C44-Dendritic-CD19-CD133-granulocyte-acute-thymus-immature	0
C45-testicular-choriocarcinoma-H9-teratocarcinoma-Wilms-pancreatic-iPS	0
C46-acute-Hodgkin-thymus-CD8-chronic-CD4-merkel	0
C47-CD19-Burkitt-acute-xeroderma-tonsil-lymphoma-appendix	0
C48-smooth-bladder-esophagus-colon-penis-aorta-uterus	0
C49-H9-iPS-testicular-HES3GFP-teratocarcinoma-hepatoblastoma-choriocarcinoma	0
C5-Hepatocyte-liver-hepatocellular-Intestinal-kidney-small-pancreas	0
C50-chorionic-placenta-amniotic-migratory-smallcell-chronic-choriocarcinoma	0
C51-kidney-mesothelioma-renal-signet-gall-lung-pancreas	0
C52-adult-NK-chronic-cord-testis-embryonic-myeloma	0
C53-medulloblastoma-pineal-retinoblastoma-small-retina-eye-pituitary	0
C54-Dendritic-Macrophage-Monocytederived-CD14-leiomyoma-adipose-immature	0
C55-hepatocellular-Intestinal-liver-Prostate-fibrosarcoma-Hepatocyte-hepatoblastoma	0
C56-heart-left-umbilical-skeletal-penis-diaphragm-tongue	0
C57-Neutrophils-Eosinophils-Whole-CD4-CD8-CD19-Natural	0.473
C58-Melanocyte-melanoma-retina-Retinal-eye-migratory-H9	0
C59-Smooth-Fibroblast-Mesenchymal-tenocyte-Ewing-skin-hepatic	0
C6-CD14-Eosinophils-Basophils-Peripheral-CD34-Natural-immature	0.0943
C60-esophagus-tonsil-throat-tongue-uterus-cervix-cervical	0
C61-migratory-Dendritic-immature-Macrophage-xeroderma-cord-b	0
C62-Burkitt-tonsil-CD19-submaxillary-spleen-salivary-lymph	0
C63-neuroectodermal-neuroblastoma-carcinoid-peripheral-chronic-neuroepithelioma-acute	0
C64-Mast-chronic-acute-immature-chorionic-Basophils-Dendritic	0
C65-CD14-Eosinophils-Monocytederived-Basophils-immature-Macrophage-Neutrophils	0.785
C66-cerebellum-middle-occipital-parietal-medial-amygdala-hippocampus	0
C67-CD14-Monocytederived-Macrophage-dura-Dendritic-spleen-lung	0
C68-amniotic-chorionic-Placental-salivary-placenta-tongue-mesothelioma	0
C69-anaplastic-CD14-cord-hairy-mycosis-adult-NK	0
C7-CD14-Eosinophils-Neutrophils-Smooth-Basophils-Macrophage-Mast	0.0943
C70-parotid-submaxillary-salivary-throat-trachea-aorta-tongue	0
C71-Monocytederived-Macrophage-CD14-Dendritic-Osteoblast-leiomyoma-Prostate	0.169
C72-skeletal-tongue-throat-heart-diaphragm-penis-left	0
C73-pineal-eye-retina-caudate-cerebellum-left-parietal	0
C74-splenic-B-b-plasma-xeroderma-lymphoma-hairy	0
C75-Eosinophils-Natural-CD8-Basophils-CD14-CD4-Peripheral	0.0943
C76-argyrophil-gastrointestinal-temporal-duodenum-neuroblastoma-merkel-smallcell	0
C77-Saos2-osteosarcoma-Neutrophils-Natural-Chondrocyte-Basophils-CD8	0
C78-lymphoma-plasma-tonsil-appendix-lymph-seminal-trachea	0
C79-chorionic-Chondrocyte-Cardiac-Smooth-Fibroblast-Preadipocyte-Mesenchymal	0
C8-Natural-CD8-Basophils-CD4-CD14-Peripheral-CD34	0
C80-immature-migratory-CD14-Dendritic-splenic-cord-Mast	0
C81-trachea-salivary-throat-aorta-eye-submaxillary-parotid	0
C82-Basophils-CD14-Eosinophils-Natural-Peripheral-immature-CD34	0.172
C83-choriocarcinoma-pancreatic-placenta-chorionic-HES3GFP-testicular-amniotic	0
C84-choriocarcinoma-pancreatic-Wilms-Mallassezderived-thymus-salivary-colon	0
C85-neuroblastoma-carcinoid-retinoblastoma-small-pineal-rhabdomyosarcoma-medulloblastoma	0
C86-colon-carcinoid-small-neuroectodermal-giant-large-neuroepithelioma	0
C87-retinoblastoma-left-nonsmall-heart-small-diaphragm-bronchogenic	0
C88-Melanocyte-melanoma-Macrophage-Mesenchymal-migratory-Dendritic-Monocytederived	0
C89-small-retinoblastoma-medulloblastoma-iPS-acantholytic-eye-bronchogenic	0
C9-skeletal-diaphragm-tongue-throat-penis-heart-left	0
C90-neuroectodermal-peripheral-neuroepithelioma-neuroblastoma-carcinoid-parietal-putamen	0
C91-Fibroblast-Smooth-mesenchymal-Mesothelial-Small-Preadipocyte-Hair	0
C92-CD14CD16-CD14-Eosinophils-Basophils-Neutrophils-Macrophage-Whole	0.39
C93-chronic-acute-leukemia-acantholytic-medulloblastoma-testis-papillotubular	0
C94-smallcell-adrenal-lung-nonsmall-small-somatostatinoma-teratocarcinoma	0
C95-lung-aorta-trachea-penis-Alveolar-throat-endometrioid	0
C96-non-acute-tonsil-spleen-Burkitt-lymphoma-appendix	0
C97-small-smallcell-gastrointestinal-argyrophil-putamen-duodenum-brain	0
C98-CD8-Natural-Basophils-blood-CD4-Peripheral-Whole	0
C99-hairy-mycosis-submaxillary-salivary-cord-kidney-parotid	0

Repeat families with enriched expression in this sampleSummary:Ranked list of repeat family expression in this sample relative tothe median expression in the FANTOM5 collection is shown. Value is log10transformed. Analyst:NA link to dataset. data

TFBS(DNA)motifs over-represented in proximal region of promoters active in this sample

JASPAR motifsSummary:Association of JASPAR motif to the promoter expression in thissample. Pearson's correlation between the number of TFBSs estimated byusing the position-weight matrix for each promoter and its expression isexpressed as Z-score by taking the ones based on random position-weightmatrix, and the tail probability of the normal distribution correspondingto the Z-score is taken as the resulting P-value. Lower P-value indicatesmore (non-random) association of the motif to promoter expression Analyst: Michiel de Hoon link to dataset. data

library id: CNhs13491

Jaspar motif	Logo	P-value
MA0002.2	MA0002.2	1.82801e-8
MA0003.1	MA0003.1	0.293
MA0004.1	MA0004.1	0.361
MA0006.1	MA0006.1	0.741
MA0007.1	MA0007.1	0.876
MA0009.1	MA0009.1	0.406
MA0014.1	MA0014.1	0.857
MA0017.1	MA0017.1	0.0316
MA0018.2	MA0018.2	0.315
MA0019.1	MA0019.1	0.613
MA0024.1	MA0024.1	4.76957e-4
MA0025.1	MA0025.1	6.52506e-4
MA0027.1	MA0027.1	0.775
MA0028.1	MA0028.1	0.529
MA0029.1	MA0029.1	0.59
MA0030.1	MA0030.1	0.707
MA0031.1	MA0031.1	0.495
MA0035.2	MA0035.2	0.574
MA0038.1	MA0038.1	0.02
MA0039.2	MA0039.2	0.669
MA0040.1	MA0040.1	0.155
MA0041.1	MA0041.1	0.938
MA0042.1	MA0042.1	0.441
MA0043.1	MA0043.1	6.60022e-4
MA0046.1	MA0046.1	0.0488
MA0047.2	MA0047.2	0.258
MA0048.1	MA0048.1	0.999
MA0050.1	MA0050.1	2.66436e-6
MA0051.1	MA0051.1	0.0189
MA0052.1	MA0052.1	0.347
MA0055.1	MA0055.1	0.476
MA0057.1	MA0057.1	0.705
MA0058.1	MA0058.1	0.171
MA0059.1	MA0059.1	0.548
MA0060.1	MA0060.1	1.59911e-10
MA0061.1	MA0061.1	5.23069e-5
MA0062.2	MA0062.2	0.00953
MA0065.2	MA0065.2	0.0379
MA0066.1	MA0066.1	0.154
MA0067.1	MA0067.1	7.43953e-4
MA0068.1	MA0068.1	0.879
MA0069.1	MA0069.1	0.928
MA0070.1	MA0070.1	0.0477
MA0071.1	MA0071.1	0.253
MA0072.1	MA0072.1	0.908
MA0073.1	MA0073.1	0.251
MA0074.1	MA0074.1	0.212
MA0076.1	MA0076.1	0.669
MA0077.1	MA0077.1	0.118
MA0078.1	MA0078.1	0.435
MA0079.2	MA0079.2	0.959
MA0080.2	MA0080.2	1.02327e-16
MA0081.1	MA0081.1	1.59772e-4
MA0083.1	MA0083.1	0.99
MA0084.1	MA0084.1	0.808
MA0087.1	MA0087.1	0.474
MA0088.1	MA0088.1	0.666
MA0090.1	MA0090.1	0.0644
MA0091.1	MA0091.1	0.573
MA0092.1	MA0092.1	0.242
MA0093.1	MA0093.1	0.364
MA0099.2	MA0099.2	6.54659e-38
MA0100.1	MA0100.1	0.648
MA0101.1	MA0101.1	8.13684e-4
MA0102.2	MA0102.2	2.61523e-9
MA0103.1	MA0103.1	0.463
MA0104.2	MA0104.2	0.957
MA0105.1	MA0105.1	1.58618e-6
MA0106.1	MA0106.1	0.505
MA0107.1	MA0107.1	6.94001e-5
MA0108.2	MA0108.2	0.0186
MA0111.1	MA0111.1	0.346
MA0112.2	MA0112.2	1.08717e-4
MA0113.1	MA0113.1	0.914
MA0114.1	MA0114.1	0.237
MA0115.1	MA0115.1	0.815
MA0116.1	MA0116.1	4.02943e-4
MA0117.1	MA0117.1	0.284
MA0119.1	MA0119.1	0.467
MA0122.1	MA0122.1	0.734
MA0124.1	MA0124.1	0.572
MA0125.1	MA0125.1	0.307
MA0131.1	MA0131.1	0.425
MA0135.1	MA0135.1	0.243
MA0136.1	MA0136.1	9.71207e-20
MA0137.2	MA0137.2	0.492
MA0138.2	MA0138.2	0.669
MA0139.1	MA0139.1	0.635
MA0140.1	MA0140.1	0.444
MA0141.1	MA0141.1	0.0713
MA0142.1	MA0142.1	0.877
MA0143.1	MA0143.1	0.503
MA0144.1	MA0144.1	0.158
MA0145.1	MA0145.1	0.193
MA0146.1	MA0146.1	0.028
MA0147.1	MA0147.1	0.925
MA0148.1	MA0148.1	0.931
MA0149.1	MA0149.1	0.266
MA0150.1	MA0150.1	1.43776e-12
MA0152.1	MA0152.1	0.379
MA0153.1	MA0153.1	0.0093
MA0154.1	MA0154.1	0.00169
MA0155.1	MA0155.1	0.67
MA0156.1	MA0156.1	8.48451e-14
MA0157.1	MA0157.1	0.257
MA0159.1	MA0159.1	0.0301
MA0160.1	MA0160.1	0.0212
MA0162.1	MA0162.1	0.949
MA0163.1	MA0163.1	4.2026e-5
MA0164.1	MA0164.1	0.701
MA0258.1	MA0258.1	0.00233
MA0259.1	MA0259.1	0.436

FANTOM5 phase1 novel unique motifsSummary:Association of the 169 novel and unique motifs discovered in FANTOM5 phase1 in this sample. Among the de-novo motifs discovered by DMF, HOMER,ChIPMunk, and ScanAll, only novel motifs are selected after comparison with known motif sets, and their clustering based on MACRO-APE resulted in169 novel and unique motifs. Their association to the promoter expression is evaluated in the same way to the JASPAR motif above Analyst: Michiel de Hoon link to dataset. data

library id: CNhs13491

Novel motif	Logo	P-value
1	1	0.156
10	10	0.0223
100	100	0.668
101	101	0.67
102	102	0.396
103	103	0.301
104	104	0.541
105	105	0.28
106	106	6.99327e-4
107	107	0.243
108	108	0.992
109	109	0.187
11	11	0.216
110	110	0.369
111	111	0.049
112	112	0.27
113	113	0.475
114	114	0.0191
115	115	0.214
116	116	0.875
117	117	0.0306
118	118	0.216
119	119	0.173
12	12	0.337
120	120	0.675
121	121	0.532
122	122	0.675
123	123	0.0411
124	124	0.673
125	125	0.816
126	126	0.159
127	127	0.228
128	128	0.0162
129	129	0.496
13	13	0.187
130	130	0.26
131	131	0.344
132	132	0.0696
133	133	0.79
134	134	0.62
135	135	0.253
136	136	0.972
137	137	0.00421
138	138	0.165
139	139	0.0475
14	14	0.414
140	140	0.19
141	141	0.333
142	142	0.729
143	143	0.0328
144	144	0.86
145	145	0.571
146	146	0.441
147	147	0.209
148	148	0.0262
149	149	0.742
15	15	0.157
150	150	0.482
151	151	0.273
152	152	0.0799
153	153	0.358
154	154	0.611
155	155	0.458
156	156	0.826
157	157	0.419
158	158	0.106
159	159	0.829
16	16	0.42
160	160	0.607
161	161	0.624
162	162	0.244
163	163	0.605
164	164	0.129
165	165	0.117
166	166	0.359
167	167	0.293
168	168	0.396
169	169	0.0106
17	17	0.205
18	18	0.25
19	19	0.267
2	2	0.896
20	20	0.441
21	21	0.349
22	22	0.154
23	23	0.0563
24	24	0.189
25	25	0.299
26	26	0.0526
27	27	0.715
28	28	0.44
29	29	0.397
3	3	0.0727
30	30	0.654
31	31	0.685
32	32	0.623
33	33	0.542
34	34	0.325
35	35	0.197
36	36	0.209
37	37	0.0565
38	38	0.311
39	39	0.811
4	4	0.618
40	40	0.18
41	41	0.0136
42	42	0.381
43	43	0.0437
44	44	0.914
45	45	0.661
46	46	0.172
47	47	0.537
48	48	0.466
49	49	0.109
5	5	0.216
50	50	0.955
51	51	0.342
52	52	0.29
53	53	0.225
54	54	0.321
55	55	0.398
56	56	0.628
57	57	0.933
58	58	0.104
59	59	0.108
6	6	0.596
60	60	0.0388
61	61	0.465
62	62	0.0357
63	63	0.493
64	64	0.525
65	65	0.211
66	66	0.348
67	67	0.461
68	68	0.878
69	69	0.838
7	7	0.227
70	70	0.0163
71	71	0.0346
72	72	0.241
73	73	0.0747
74	74	0.161
75	75	0.0558
76	76	0.28
77	77	0.413
78	78	0.0957
79	79	0.195
8	8	0.471
80	80	0.12
81	81	0.417
82	82	0.135
83	83	0.336
84	84	0.493
85	85	0.0127
86	86	0.0292
87	87	0.3
88	88	0.416
89	89	0.413
9	9	0.31
90	90	0.0705
91	91	0.343
92	92	0.188
93	93	0.161
94	94	0.036
95	95	0.376
96	96	0.433
97	97	0.926
98	98	0.167
99	99	0.114

de novo motifs identified by HOMER in promoters active in this sampleSummary:The result of HOMER in this sample is shown. Analyst:NA library id: CNhs13491

FANTOM5 (FF) ontology

Direct parent terms

is_a relathionship
EFO:0002091 biological replicate
FF:0011101 human CD14-positive monocytes - mock treated sample

Ancestor terms (non development)Summary:Connected ontology terms with is_a, part_of or located_in relationship Analyst: Hideya Kawaji link to source data data

CL: Cell type
0000000 (cell), 0000000 (cell)
0000003 (native cell)
0000988 (hematopoietic cell)
0000548 (animal cell)
0000763 (myeloid cell)
0002371 (somatic cell)
0000766 (myeloid leukocyte)
0000219 (motile cell)
0000325 (stuff accumulating cell)
0000473 (defensive cell)
0000234 (phagocyte)
0000738 (leukocyte)
0002087 (nongranular leukocyte)
0000255 (eukaryotic cell)
0000576 (monocyte)
0000860 (classical monocyte)
0002057 (CD14-positive, CD16-negative classical monocyte)

FF: FANTOM5
0000102 (sample by type)
0000210 (human sample)
0000002 (in vivo cell sample)
0000101 (sample by species)
0000001 (sample)
0000343 (control treatment sample)
0000350 (experimentally modified sample)
0011101 (human CD14-positive monocytes - mock treated sample)

Ancestor terms (development)Summary:Connected ontology terms with develops_from, derives_from or preceded_by relationship Analyst: Hideya Kawaji link to source data data
CL:0000049 (common myeloid progenitor)
CL:0000134 (mesenchymal cell)
CL:0002057 (CD14-positive, CD16-negative classical monocyte)

@@ Line 1: / Line 1: @@
 {{f5samples
-|ancestors_in_anatomy_facet=UBERON:0000468,UBERON:0000922,UBERON:0002371,UBERON:0001474,UBERON:0002384,UBERON:0000926,UBERON:0000479,UBERON:0000062,UBERON:0004765,UBERON:0004120,UBERON:0000061,UBERON:0000465,UBERON:0000480,UBERON:0000923,UBERON:0002050,UBERON:0005423,UBERON:0000467,UBERON:0001062,UBERON:0005291,UBERON:0006598,UBERON:0002532,UBERON:0002204,UBERON:0001434,UBERON:0002390,UBERON:0002193,UBERON:0002405,UBERON:0003081,UBERON:0006603,UBERON:0003061
+|DRA_sample_Accession=CAGE@SAMD00004822
-|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000144,CL:0000723,CL:0000048,CL:0000988,CL:0000839,CL:0000548,CL:0002194,CL:0000034,CL:0002032,CL:0000763,CL:0000012,CL:0002320,CL:0000063,CL:0002371,CL:0000766,CL:0000219,CL:0000004,CL:0000134,CL:0000738,CL:0002087,CL:0000255,CL:0002031,CL:0000576,CL:0000037,CL:0000860,CL:0000566,CL:0000049,CL:0000557,CL:0000837,CL:0002057,CL:0002009,CL:0000040,CL:0000559
+|accession_numbers=CAGE;DRX008134;DRR009006;DRZ000431;DRZ001816;DRZ011781;DRZ013166
+|ancestors_in_anatomy_facet=
+|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000988,CL:0000548,CL:0000763,CL:0002371,CL:0000766,CL:0000219,CL:0000325,CL:0000473,CL:0000234,CL:0000738,CL:0002087,CL:0000255,CL:0000576,CL:0000860,CL:0002057
 |ancestors_in_disease_facet=
+|ancestors_in_ff_facet=FF:0000102,FF:0000210,FF:0000002,FF:0000101,FF:0000001,FF:0000343,FF:0000350,FF:0011101
 |comment=
 |created_by=
 |creation_date=
-|datafreeze_phase=1
+|data_phase=2
+|datafreeze_phase=2
 |def=
 |expression_enrichment_score=chr11:47400078..47400106,-!p1@SPI1!2.74!547.27!SPI1;;chr12:54778471..54778528,-!p1@ZNF385A!2.52!333.80!ZNF385A;;chr2:68592406..68592424,+!p1@PLEK!2.46!287.95!PLEK;;chr16:85932760..85932775,+!p1@IRF8!2.28!190.91!IRF8;;chr21:34442439..34442455,+!p1@OLIG1!2.27!187.27!OLIG1;;chr7:115670804..115670825,-!p1@TFEC!2.15!139.00!TFEC;;chr11:47399947..47399961,-!p3@SPI1!2.11!128.81!SPI1;;chr1:25256756..25256774,-!p1@RUNX3!2.09!220.99!RUNX3;;chr11:47400062..47400077,-!p2@SPI1!1.95!88.30!SPI1;;chr11:47399996..47400014,-!p4@SPI1!1.83!66.95!SPI1;;chr19:33793430..33793447,-!p1@CEBPA!1.79!244.28!CEBPA;;chr12:54778351..54778378,-!p6@ZNF385A!1.79!61.13!ZNF385A;;chr20:39317868..39317884,-!p1@MAFB!1.78!655.70!MAFB;;chr11:47400032..47400043,-!p5@SPI1!1.77!58.46!SPI1;;chr6:106534192..106534224,+!p1@PRDM1!1.75!149.43!PRDM1;;chr19:50432132..50432217,+!p2@ATF5!1.72!61.13!ATF5;;chr2:145277640..145277771,-!p1@ZEB2!1.65!557.94!ZEB2;;chr21:34442540..34442560,+!p2@OLIG1!1.62!40.51!OLIG1;;chr7:50344289..50344323,+!p1@IKZF1!1.59!37.84!IKZF1;;chr6:106534230..106534254,+!p2@PRDM1!1.53!79.81!PRDM1;;chr21:30671690..30671762,+!p2@BACH1!1.52!104.80!BACH1;;chr6:144385698..144385742,-!p2@PLAGL1!1.52!39.06!PLAGL1;;chr2:70142232..70142251,+!p1@MXD1!1.51!168.11!MXD1;;chr19:45971246..45971265,+!p1@FOSB!1.49!532.47!FOSB;;chr11:47400045..47400060,-!p6@SPI1!1.49!30.08!SPI1;;chrX:2418949..2419024,-!p1@DHRSX,p1@ZBED1!1.49!29.60!ZBED1;;chr19:13213662..13213686,-!p1@LYL1!1.47!41.72!LYL1;;chr12:48298765..48298783,-!p2@VDR!1.44!54.10!VDR;;chr7:128577972..128578047,+!p1@IRF5!1.42!39.54!IRF5;;chr10:51572339..51572376,+!p4@NCOA4!1.38!50.94!NCOA4;;chr12:54694758..54694805,-!p1@NFE2!1.38!27.90!NFE2;;chr19:42636586..42636607,-!p1@POU2F2!1.36!59.68!POU2F2;;chr10:51572408..51572454,+!p3@NCOA4!1.34!118.87!NCOA4;;chr12:48298785..48298828,-!p1@VDR!1.32!103.34!VDR;;chr12:96588279..96588299,+!p4@ELK3!1.32!91.21!ELK3;;chr1:25256439..25256476,-!p3@RUNX3!1.32!20.13!RUNX3;;chr9:117150254..117150271,-!p1@AKNA!1.31!52.40!AKNA;;chr12:96588368..96588394,+!p3@ELK3!1.31!51.43!ELK3;;chr10:31288398..31288455,-!p2@ZNF438!1.31!22.56!ZNF438;;chr21:34398234..34398250,+!p1@OLIG2!1.31!19.41!OLIG2;;chr2:145275162..145275202,-!p2@ZEB2!1.30!109.16!ZEB2;;chr2:238600933..238600985,+!p3@LRRFIP1!1.30!101.16!LRRFIP1;;chrX:129244430..129244442,-!p5@ELF4!1.30!18.92!ELF4;;chr12:11802753..11802834,+!p2@ETV6!1.29!89.51!ETV6;;chr16:31885093..31885165,+!p1@ZNF267!1.28!266.11!ZNF267;;chrX:129244454..129244488,-!p1@ELF4!1.28!127.84!ELF4;;chr2:238600998..238601013,+!p5@LRRFIP1!1.28!18.19!LRRFIP1;;chr20:48599506..48599526,+!p1@SNAI1!1.27!110.62!SNAI1;;chr12:96588219..96588263,+!p2@ELK3!1.26!122.26!ELK3;;chr21:36260295..36260310,-!p3@RUNX1!1.26!27.65!RUNX1;;chr17:38497662..38497713,+!p4@RARA!1.26!20.13!RARA;;chr11:47399920..47399931,-!p7@SPI1!1.26!17.22!SPI1;;chr13:41593425..41593480,-!p1@ELF1!1.25!103.83!ELF1;;chr6:44233252..44233296,-!p1@NFKBIE!1.24!158.89!NFKBIE;;chr5:88178983..88179012,-!p1@MEF2C!1.24!123.72!MEF2C;;chr12:124873852..124873881,-!p3@NCOR2!1.24!96.55!NCOR2;;chr10:31288370..31288393,-!p3@ZNF438!1.24!16.25!ZNF438;;chr4:106068026..106068084,+!p1@TET2!1.23!139.97!TET2;;chr14:35872453..35872485,-!p2@NFKBIA!1.23!38.81!NFKBIA;;chr21:30671235..30671253,+!p1@BACH1!1.21!188.49!BACH1;;chr6:15246200..15246214,+!p2@JARID2!1.21!41.97!JARID2;;chr18:3449720..3449749,+!p2@TGIF1!1.21!32.26!TGIF1;;chr19:45251395..45251432,+!p8@BCL3!1.21!15.28!BCL3;;chr19:19496539..19496576,+!p8@GATAD2A!1.20!25.71!GATAD2A;;chr21:36421535..36421610,-!p2@RUNX1!1.19!51.43!RUNX1;;chr19:45250948..45250998,+!p3@BCL3!1.18!35.90!BCL3;;chr7:17338266..17338282,+!p1@AHR!1.14!137.30!AHR;;chr2:70314240..70314256,+!p4@PCBP1!1.14!26.20!PCBP1;;chr6:391743..391759,+!p1@IRF4!1.13!12.37!IRF4;;chr19:13213954..13214021,-!p4@LYL1!1.13!12.37!LYL1;;chrX:106960285..106960299,-!p1@TSC22D3!1.12!327.73!TSC22D3;;chr7:50343634..50343717,+!p2@IKZF1!1.12!12.13!IKZF1;;chr21:30672433..30672464,+!p6@BACH1!1.11!11.89!BACH1;;chr9:110252035..110252057,-!p1@KLF4!1.09!181.21!KLF4;;chr2:145277882..145277967,-!p3@ZEB2!1.09!19.65!ZEB2;;chr19:45252008..45252024,+!p2@BCL3!1.07!35.42!BCL3;;chr3:170075436..170075520,+!p1@SKIL!1.06!228.76!SKIL;;chr2:61108695..61108753,+!p1@REL!1.06!73.02!REL;;chr1:156470515..156470542,-!p2@MEF2D!1.06!55.07!MEF2D;;chr10:94449703..94449718,+!p1@HHEX!1.06!40.51!HHEX;;chr7:17338324..17338341,+!p3@AHR!1.06!35.66!AHR;;chr4:103422499..103422632,+!p1@NFKB1!1.05!216.87!NFKB1;;chr9:88969303..88969335,-!p1@ZCCHC6!1.05!95.82!ZCCHC6;;chr9:137217986..137218049,+!p3@RXRA!1.05!29.84!RXRA;;chr3:12329397..12329433,+!p2@PPARG!1.05!23.53!PPARG;;chr1:212782094..212782109,+!p1@ATF3!1.04!272.42!ATF3;;chr10:64576105..64576133,-!p1@EGR2!1.04!20.86!EGR2;;chr19:36391434..36391450,-!p1@NFKBID!1.04!19.89!NFKBID;;chr12:72056773..72056796,+!p3@THAP2!1.04!13.10!THAP2;;chr1:25291620..25291635,-!p4@RUNX3!1.04!9.95!RUNX3;;chr20:48807351..48807384,+!p1@CEBPB!1.03!1002.36!CEBPB;;chr8:22550982..22550999,-!p1@EGR3!1.03!28.14!EGR3;;chr2:185463247..185463263,+!p1@ZNF804A!1.03!17.22!ZNF804A;;chr12:54785054..54785072,-!p4@ZNF385A!1.03!10.92!ZNF385A;;chr2:97202480..97202499,+!p1@ARID5A!1.02!98.00!ARID5A;;chr15:90544532..90544563,+!p1@ZNF710!1.02!19.41!ZNF710;;chr12:72056749..72056767,+!p6@THAP2!1.02!10.43!THAP2;;chr1:157108130..157108173,-!p1@ETV3!1.01!67.44!ETV3;;chr17:38498402..38498445,+!p3@RARA!1.01!34.20!RARA;;chr9:129567282..129567353,+!p1@ZBTB43!0.99!118.14!ZBTB43;;chr7:28725740..28725778,+!p1@CREB5!0.99!79.32!CREB5;;chr17:38498594..38498661,+!p2@RARA!0.99!30.08!RARA;;chr2:231280954..231280965,+!p2@SP100!0.99!16.50!SP100;;chr10:135044190..135044229,+!p3@UTF1!0.99!8.73!UTF1;;chr11:615942..615957,-!p1@IRF7!0.98!83.21!IRF7;;chr19:19496624..19496660,+!p3@GATAD2A!0.98!40.51!GATAD2A;;chr8:116681123..116681143,-!p4@TRPS1!0.98!16.98!TRPS1;;chr18:3449695..3449712,+!p9@TGIF1!0.98!13.34!TGIF1;;chr14:35873947..35873965,-!p1@NFKBIA!0.97!543.87!NFKBIA;;chr17:38474489..38474548,+!p1@RARA!0.97!269.51!RARA;;chr12:52445218..52445237,+!p1@NR4A1!0.97!108.44!NR4A1;;chr15:31619013..31619095,+!p1@KLF13!0.96!195.52!KLF13;;chr8:71316428..71316459,-!p2@NCOA2!0.96!13.83!NCOA2;;chr10:3827371..3827386,-!p2@KLF6!0.95!68.89!KLF6;;chr2:157189180..157189290,-!p1@NR4A2!0.95!42.69!NR4A2;;chrX:106960180..106960197,-!p2@TSC22D3!0.95!30.81!TSC22D3;;chr2:28618532..28618610,+!p4@FOSL2!0.95!13.83!FOSL2;;chr9:88969287..88969297,-!p3@ZCCHC6!0.95!10.67!ZCCHC6;;chr5:131826457..131826514,-!p1@IRF1!0.94!316.09!IRF1;;chr6:15246261..15246312,+!p1@JARID2!0.94!194.31!JARID2;;chr10:104154246..104154347,+!p3@NFKB2!0.94!48.52!NFKB2;;chr8:116681150..116681164,-!p5@TRPS1!0.94!15.28!TRPS1;;chr18:3449618..3449634,+!p13@TGIF1!0.94!9.70!TGIF1;;chr7:137620684..137620711,-!p4@CREB3L2!0.94!7.76!CREB3L2;;chr10:104155480..104155534,+!p2@NFKB2!0.93!50.46!NFKB2;;chr5:88179195..88179224,-!p3@MEF2C!0.93!12.13!MEF2C;;chr4:185395633..185395651,-!p2@IRF2!0.92!11.89!IRF2;;chr12:54785074..54785122,-!p2@ZNF385A!0.92!11.40!ZNF385A;;chr12:54694807..54694832,-!p3@NFE2!0.92!7.28!NFE2;;chr14:75745523..75745537,+!p1@FOS!0.91!888.10!FOS;;chr9:88969339..88969422,-!p2@ZCCHC6!0.91!57.74!ZCCHC6;;chr14:74226747..74226779,-!p3@C14orf43!0.91!41.48!C14orf43;;chr5:142782823..142782854,-!p3@NR3C1!0.91!10.43!NR3C1;;chr2:208031943..208031978,-!p5@KLF7!0.91!9.70!KLF7;;chr17:40440481..40440550,+!p1@STAT5A!0.90!52.64!STAT5A;;chr2:68592394..68592405,+!p2@PLEK!0.90!7.03!PLEK;;chr19:45251943..45252006,+!p1@BCL3!0.89!189.22!BCL3;;chr2:70142189..70142223,+!p2@MXD1!0.89!50.21!MXD1;;chr7:149470641..149470694,-!p1@ZNF467!0.89!32.02!ZNF467;;chr1:156470494..156470505,-!p3@MEF2D!0.89!9.95!MEF2D;;chr12:11802690..11802704,+!p4@ETV6!0.89!9.95!ETV6;;chr3:39195037..39195069,-!p2@CSRNP1!0.88!43.42!CSRNP1;;chr18:3449586..3449617,+!p8@TGIF1!0.88!10.92!TGIF1;;chr12:72056800..72056834,+!p1@THAP2!0.88!8.98!THAP2;;chr2:61108808..61108821,+!p3@REL!0.88!8.49!REL;;chr13:41593392..41593403,-!p7@ELF1!0.88!6.55!ELF1;;chr15:90545434..90545449,+!p9@ZNF710!0.88!6.55!ZNF710;;chr8:116681194..116681214,-!p1@TRPS1!0.87!63.56!TRPS1;;chr2:208394817..208394834,+!p3@CREB1!0.87!26.93!CREB1;;chr9:3525727..3525828,-!p2@RFX3!0.87!17.22!RFX3;;chr6:34204973..34204990,+!p4@HMGA1!0.86!87.82!HMGA1;;chr19:4067039..4067064,-!p3@ZBTB7A!0.86!19.41!ZBTB7A;;chr14:35872962..35873025,-!p3@NFKBIA!0.86!16.50!NFKBIA;;chr12:54694653..54694672,-!p2@NFE2!0.86!6.31!NFE2;;chr19:50432104..50432126,+!p6@ATF5!0.86!6.31!ATF5;;chr1:37940170..37940190,+!p1@ZC3H12A!0.85!79.08!ZC3H12A;;chr11:128563948..128564003,+!p1@FLI1!0.85!78.84!FLI1;;chr18:3449527..3449582,+!p6@TGIF1!0.85!11.89!TGIF1;;chr1:114302066..114302080,-!p2@PHTF1!0.85!11.40!PHTF1;;chr12:11802932..11802949,+!p3@ETV6!0.85!10.92!ETV6;;chr2:231090433..231090469,+!p1@SP140!0.85!6.06!SP140;;chr1:158979872..158979898,+!p3@IFI16!0.84!19.16!IFI16;;chr10:94449675..94449694,+!p2@HHEX!0.84!16.74!HHEX;;chr13:41635029..41635044,-!p4@ELF1!0.84!13.10!ELF1;;chr16:89787973..89788001,+!p3@ZNF276!0.84!11.89!ZNF276;;chr2:28615716..28615733,+!p1@FOSL2!0.83!293.77!FOSL2;;chr20:48807456..48807475,+!p3@CEBPB!0.83!11.64!CEBPB;;chr4:185395590..185395627,-!p3@IRF2!0.83!7.28!IRF2;;chr8:81397820..81397836,+!p2@ZBTB10!0.83!7.28!ZBTB10;;chr7:115670792..115670797,-!p2@TFEC!0.83!5.82!TFEC;;chr17:38497715..38497734,+!p8@RARA!0.83!5.82!RARA;;chr1:25291648..25291665,-!p7@RUNX3!0.83!5.82!RUNX3;;chr12:54778444..54778451,-!p8@ZNF385A!0.83!5.82!ZNF385A;;chr2:238600789..238600925,+!p1@LRRFIP1!0.82!120.08!LRRFIP1;;chr7:17338239..17338262,+!p2@AHR!0.82!45.12!AHR;;chr19:6110474..6110551,-!p1@RFX2!0.82!36.63!RFX2;;chrX:129244840..129244881,-!p2@ELF4!0.82!23.05!ELF4;;chr6:15246217..15246228,+!p3@JARID2!0.82!10.43!JARID2;;chr6:41703296..41703367,-!p1@TFEB!0.81!29.35!TFEB;;chr3:37217736..37217753,-!p2@LRRFIP2!0.81!24.74!LRRFIP2;;chr14:75988771..75988826,+!p1@BATF!0.81!7.52!BATF;;chr19:45254529..45254561,+!p10@BCL3!0.81!7.52!BCL3;;chr10:104155659..104155676,+!p4@NFKB2!0.81!7.03!NFKB2;;chr2:145275228..145275241,-!p11@ZEB2!0.81!6.79!ZEB2;;chr21:36260980..36261011,-!p1@RUNX1!0.80!164.96!RUNX1;;chr9:117160738.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+|fantom_cat=http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000222;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000234;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000576;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000738;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000763;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000766;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000860;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000988;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0002193;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0002390;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0002405
+|ffid_belonging_in_development=CL:0000049,CL:0000134,CL:0002057
 |fonse_cell_line=
 |fonse_cell_line_closure=
@@ Line 36: / Line 42: @@
 |fonse_treatment_closure=FF:0000343,FF:0011101,FF:11883-125D2
 |has_quality=
+|hg19bam=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/CD14%252b%2520monocytes%2520-%2520mock%2520treated%252c%2520donor3.CNhs13491.11883-125D2.hg19.nobarcode.bam
+|hg19ctss=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/CD14%252b%2520monocytes%2520-%2520mock%2520treated%252c%2520donor3.CNhs13491.11883-125D2.hg19.ctss.bed.gz
+|hg19fasta=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/CD14%252b%2520monocytes%2520-%2520mock%2520treated%252c%2520donor3.CNhs13491.11883-125D2.hg19.nobarcode.rdna.fa.gz
+|hg38bam=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.primary_cell.hCAGE/CD14%252b%2520monocytes%2520-%2520mock%2520treated%252c%2520donor3.CNhs13491.11883-125D2.hg38.nobarcode.bam
+|hg38ctss=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.primary_cell.hCAGE/CD14%252b%2520monocytes%2520-%2520mock%2520treated%252c%2520donor3.CNhs13491.11883-125D2.hg38.nobarcode.ctss.bed.gz
 |id=FF:11883-125D2
 |is_a=EFO:0002091;;FF:0011101
 |is_obsolete=
+|library_id=CNhs13491
+|library_id_phase_based=2:CNhs13491
+|microRNAs=
+|microRNAs_nn=
+|microRNAs_nonnovel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer/#/human#cage;sample;11883
+|microRNAs_novel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer_novel/#/human#cage;sample;11883
 |name=CD14+ monocytes - mock treated, donor3
 |namespace=
@@ Line 44: / Line 61: @@
 |profile_cagescan=,,,
 |profile_hcage=CNhs13491,LSID1025,release012,COMPLETED
-|profile_rnaseq=,,,
+|profile_rnaseq=
 |profile_srnaseq=,,,
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 |rna_box=125
 |rna_catalog_number=
@@ Line 59: / Line 79: @@
 |rna_weight_ug=2.884275
 |sample_age=21
+|sample_category=primary cells
 |sample_cell_catalog=
 |sample_cell_line=
@@ Line 80: / Line 101: @@
 |top_motifs=EP300:2.56746856377;SPI1:2.55040398014;SPIB:2.44693035913;NANOG{mouse}:2.40893285849;SREBF1,2:2.33948599128;ETS1,2:2.17303354683;CEBPA,B_DDIT3:1.98080844226;NFE2:1.93159414035;PAX2:1.91687590741;PPARG:1.84973182579;ELF1,2,4:1.78672125654;DMAP1_NCOR{1,2}_SMARC:1.77625634308;FOSL2:1.70282136794;NFIL3:1.70115662717;BACH2:1.63945728758;NFE2L2:1.56420457396;HLF:1.54010464103;FOXN1:1.52352640467;RUNX1..3:1.50187251665;FOS_FOS{B,L1}_JUN{B,D}:1.49660938565;FOXP3:1.41722628261;TLX2:1.33497181608;NR1H4:1.29669708275;HIF1A:1.27983336915;HMX1:1.27206568679;ATF5_CREB3:1.23927216399;NFKB1_REL_RELA:1.22222521626;IRF1,2:1.11846165131;TFCP2:1.09941854249;TGIF1:1.05351995016;FOXD3:1.02207681543;ATF4:1.01693698916;GLI1..3:1.01355224101;HES1:0.929835041179;IRF7:0.861450306369;SMAD1..7,9:0.857991429733;MAFB:0.851625906911;FOX{F1,F2,J1}:0.846661230877;SPZ1:0.786151820238;PDX1:0.718423831408;FOX{D1,D2}:0.700164347092;NFE2L1:0.678018836104;RXRA_VDR{dimer}:0.665600299557;CREB1:0.644343607349;RFX2..5_RFXANK_RFXAP:0.622756166788;HBP1_HMGB_SSRP1_UBTF:0.606004404627;ATF6:0.600623792989;HSF1,2:0.576450512032;ESR1:0.523373531422;GATA4:0.488925304721;NR6A1:0.398432616837;BPTF:0.340423253775;FOXO1,3,4:0.318316184712;ATF2:0.31774453197;JUN:0.317706165935;NANOG:0.314999510113;ZNF148:0.288776513938;STAT2,4,6:0.282358529917;ZBTB16:0.257973171202;ESRRA:0.250128475438;ALX4:0.240906049151;IKZF2:0.224272710928;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:0.221277058793;PITX1..3:0.138635905836;AHR_ARNT_ARNT2:0.124166826557;FOXP1:0.11492130221;NFIX:0.110777095867;EN1,2:0.0586303807515;CDX1,2,4:0.0498808289336;HMGA1,2:0.024794253783;VSX1,2:0.0179951972995;ALX1:-0.00328054345685;PRDM1:-0.007672030959;OCT4_SOX2{dimer}:-0.0136825918679;RBPJ:-0.0175892284898;MYB:-0.0543107819716;EGR1..3:-0.111456629036;RXR{A,B,G}_{NR1H2,PPAR}dimers:-0.145259612281;POU5F1:-0.179069508814;MYFfamily:-0.196916864653;RREB1:-0.203409418566;TFAP2{A,C}:-0.211513096494;PAX1,9:-0.21661023238;PATZ1:-0.222680080592;POU1F1:-0.250255906505;MZF1:-0.266940668099;HOX{A5,B5}:-0.27160744629;TFAP4:-0.311718282145;PAX3,7:-0.318373363364;XBP1:-0.333491329286;REST:-0.346194944939;TBP:-0.350007569211;EBF1:-0.35067184061;TEF:-0.372838916638;ZIC1..3:-0.375322124807;RXR{A,B,G}:-0.386512006189;STAT1,3:-0.387315930252;HNF4A_NR2F1,2:-0.397583709622;SRF:-0.46396335632;ZBTB6:-0.484666130969;TOPORS:-0.486058663189;GCM1,2:-0.497316522596;PRRX1,2:-0.525983081455;ZNF238:-0.555563253756;RFX1:-0.556919968463;NKX3-1:-0.562511980146;MEF2{A,B,C,D}:-0.565648443234;AR:-0.568064386797;GATA6:-0.573067801672;ELK1,4_GABP{A,B1}:-0.574610732248;SP1:-0.594099687562;MED-1{core}:-0.610962389716;POU2F1..3:-0.632655866357;NHLH1,2:-0.637276051519;TFAP2B:-0.64385494684;IKZF1:-0.655110887202;MYOD1:-0.656230594168;NKX2-2,8:-0.663013683737;HNF1A:-0.664242046157;NFATC1..3:-0.682055464918;ZNF423:-0.704406078489;TAL1_TCF{3,4,12}:-0.712749598945;NKX6-1,2:-0.722459693002;CUX2:-0.741043144536;SOX2:-0.74805777278;MTF1:-0.757212702529;DBP:-0.762045719892;GTF2A1,2:-0.788974792311;MTE{core}:-0.805298813448;TLX1..3_NFIC{dimer}:-0.815561183376;FOXA2:-0.816809218914;MAZ:-0.860878399382;ZFP161:-0.863190564784;PAX8:-0.87869219652;NKX2-3_NKX2-5:-0.903199917894;TBX4,5:-0.910981439738;STAT5{A,B}:-0.941351082176;LMO2:-0.963756816103;GTF2I:-1.01649406326;NKX3-2:-1.02172564962;PAX4:-1.02305371751;MYBL2:-1.02909775205;SOX5:-1.04748116508;PAX5:-1.0512901817;GZF1:-1.07912813644;HOX{A6,A7,B6,B7}:-1.0854067256;RORA:-1.09708630043;TFDP1:-1.09981005014;ZEB1:-1.11231752626;FOX{I1,J2}:-1.12168136692;XCPE1{core}:-1.12400160017;NR5A1,2:-1.14035999644;CRX:-1.14075399425;POU6F1:-1.14343501208;FOXQ1:-1.14815056791;PAX6:-1.15450695245;BREu{core}:-1.16813992129;TP53:-1.19731986501;KLF4:-1.20289695025;UFEwm:-1.2137102184;FOXM1:-1.22061794003;AIRE:-1.26084283542;HOX{A4,D4}:-1.2639813296;HIC1:-1.27023641576;FOXL1:-1.28010934374;EVI1:-1.28675693515;YY1:-1.34348670225;TEAD1:-1.37170780958;SNAI1..3:-1.37619697721;ARID5B:-1.38664180537;HOXA9_MEIS1:-1.42581857911;SOX{8,9,10}:-1.4315860476;E2F1..5:-1.49816162582;ONECUT1,2:-1.52280009256;ZNF384:-1.5413089705;T:-1.54316453614;HAND1,2:-1.57979911517;NR3C1:-1.68966041907;NRF1:-1.69692038579;bHLH_family:-1.73864310142;ZNF143:-1.88690893059;LHX3,4:-1.93364073162;GFI1B:-1.94593011659;NFY{A,B,C}:-1.9535681621;NKX2-1,4:-1.95820220058;ADNP_IRX_SIX_ZHX:-2.04891621721;SOX17:-2.06150609804;POU3F1..4:-2.22499917251;GFI1:-2.35185872138;PBX1:-2.36619054836;CDC5L:-2.58241859982;LEF1_TCF7_TCF7L1,2:-2.62068896336
 |xref=
+|zenbu_report=https://fantom.gsc.riken.jp/zenbu/reports/#miRNA_expression_atlas_human;search_select_hide=table111:FF:11883-125D2;search_select_hide=table117:FF:11883-125D2
 }}

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FF:11883-125D2: Difference between revisions

From FANTOM5_SSTAR

Latest revision as of 18:26, 4 June 2020

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	Mozilla Cavendish skin modified by DaSch for the Web Community Wiki GitHub project page – Report a bug – Skin version: 2.6.0