FF:11902-125F3: Difference between revisions

Latest revision as of 18:28, 4 June 2020

Name:	migratory langerhans cells, donor2
Species:	Human (Homo sapiens)
Library ID:	CNhs13536
Sample type:	primary cells
Genomic View:	UCSC
RefEX:	Specific genes
FANTOM CAT:	1, 2, 3, 4, 5, 6, 7
CAGEd-oPOSSUM:	link
ZENBU report :	link

Additional information

Sample information

strain	NA
tissue	NA
dev stage	NA
sex	NA
age	NA
cell type	langerhans cell
cell line	NA
company	NA
collaboration	Teunis Geijtenbeek
External link for information	[{{{sample_info_link}}} {{{sample_info_link}}}]

RNA information

lot number	LC-B
catalog number	NA
sample type	total RNA
extraction protocol (Details)	OP-RNA-extraction-totalRNA-miRNeasy_Mini-v1.0

CAGE Accession numbers

Method		Sample accession id
CAGE		SAMD00004915

Library accession numbers

Library id		Method		Exp. accession id		Run accession id
CNhs13536		CAGE		DRX008569		DRR009441

Accession ID Hg19

Library id		BAM		CTSS
CNhs13536		DRZ000866		DRZ002251

Accession ID Hg38

Library id		BAM		CTSS
CNhs13536		DRZ012216		DRZ013601

Download raw sequence, BAM & CTSS

Hg19

Fasta	BAM	CTSS
download	download	donwload

Hg38

BAM	CTSS
download	donwload

Relative expression to median (log10)

Transcription factors with enriched expression in this sampleRanked list of transcription factor promoter expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.

Co-expression clusters with enriched expression in this sampleRanked list of co-expression cluster expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed. Analyst:NA link to dataset. data

Coexpression cluster	score
C0-CD14-Eosinophils-Neutrophils-Basophils-CD34-immature-Peripheral	0
C1-testis-epididymis-embryonic-medulla-pituitary-trachea-caudate	0
C10-occipital-temporal-parietal-brain-duodenum-Neurons-Neural	0
C100-rhabdomyosarcoma-gastric-pineal-Wilms-cervical-mesodermal-endometrial	0
C101-small-cerebellum-maxillary-colon-parietal-epididymis-merkel	0
C102-neuroblastoma-testicular-pituitary-carcinosarcoma-rectum-acantholytic-iPS	0
C103-CD4-CD8-Natural-Peripheral-Whole-Neutrophils-Basophils	0
C104-Mast-Basophils-immature-CD14-CD34-eye-Natural	0
C105-heart-skeletal-occipital-hippocampus-acute-Sebocyte-penis	0
C106-Hep2-epitheloid-placenta-cervical-rectal-anaplastic-glassy	0
C107-Neutrophils-CD14-Eosinophils-Monocytederived-Whole-Peripheral-blood	0
C108-breast-hepatoblastoma-MCF7-parotid-salivary-submaxillary-prostate	0
C109-Reticulocytes-non-acute-Hodgkin-Burkitt-retinoblastoma-lymphoma	-0.286
C11-cerebellum-medulla-pons-parietal-occipital-middle-medial	0
C110-leukemia-chronic-Eosinophils-acute-Whole-CD34-Lymphatic	0
C111-medulla-lung-trachea-testis-caudate-epididymis-throat	0
C112-gastric-pancreas-temporal-duodenum-small-extraskeletal-adrenal	0
C113-thyroid-throat-lung-lymph-small-colon-trachea	0
C114-teratocarcinoma-medulloblastoma-carcinosarcoma-iPS-anaplastic-acute-neuroblastoma	0
C115-pituitary-Neural-caudate-putamen-amygdala-medulla-hippocampus	0
C116-myeloma-xeroderma-tonsil-CD19-spleen-lymph-trachea	0
C117-serous-clear-kidney-neuroectodermal-mesothelioma-endometrial-Intestinal	0
C118-cerebellum-parietal-occipital-medial-middle-frontal-insula	0
C119-CD4-CD8-Natural-Neutrophils-CD14-Peripheral-CD19	0
C12-Mast-Basophils-immature-chorionic-mature-CD14-Eosinophils	0
C120-immature-salivary-tongue-skin-cervical-CD14-CD34	0
C121-NK-Natural-CD8-CD4-anaplastic-chronic-B	0
C122-chronic-Reticulocytes-skeletal-leukemia-acute-colon-Tracheal	0
C123-CD19-Natural-CD8-CD4-CD14-Peripheral-Basophils	0.0523
C124-small-temporal-duodenum-colon-gall-signet-Hepatocyte	0
C125-mucinous-alveolar-mesothelioma-Smooth-lung-CD14-Nucleus	0
C126-gastrointestinal-argyrophil-smallcell-merkel-bile-insula-brain	0
C127-maxillary-small-hepatoblastoma-hepatocellular-alveolar-colon-argyrophil	0
C128-testicular-choriocarcinoma-H9-teratocarcinoma-pancreatic-iPS-HES3GFP	0
C129-liver-Hepatocyte-colon-duodenum-temporal-testicular-small	0
C13-Neutrophils-Eosinophils-CD14-Monocytederived-Whole-Peripheral-CD4	0
C130-iPS-HES3GFP-H9-teratocarcinoma-testicular-colon-Alveolar	0
C131-lung-trachea-Alveolar-thyroid-umbilical-throat-skin	0
C132-acute-small-Dendritic-Macrophage-CD14-Neutrophils-Monocytederived	0
C133-signet-gall-small-kidney-colon-ductal-adenocarcinoma	0
C134-skeletal-diaphragm-tongue-throat-Skeletal-skin-penis	0
C135-neuroblastoma-retinoblastoma-carcinoid-choriocarcinoma-testicular-acute-rectum	0
C136-Wilms-extraskeletal-anaplastic-rhabdomyosarcoma-cholangiocellular-nonsmall-neuroectodermal	0
C137-large-ductal-melanoma-cervical-Endothelial-Smooth-chronic	0
C138-diffuse-Burkitt-lymphangiectasia-lymphoma-acute-CD19-pineal	0
C139-astrocytoma-skin-salivary-gall-serous-Mallassezderived-renal	0
C14-Whole-blood-Reticulocytes-liver-Neutrophils-Eosinophils-spleen	0
C140-Renal-Endothelial-Hepatic-Lymphatic-heart-lung-spleen	0
C141-Hodgkin-acute-thymus-chronic-vein-CD4-B	0
C142-Preadipocyte-Fibroblast-hepatic-Ewing-Adipocyte-Olfactory-Hair	0
C143-Monocytederived-CD14-Macrophage-Dendritic-Basophils-CD14CD16-Osteoblast	0
C144-CD4-tonsil-NK-appendix-CD8-splenic-mycosis	0
C145-neuroblastoma-peripheral-neuroectodermal-neuroepithelioma-carcinoid-adult-extraskeletal	0
C146-lymphangiectasia-lymphoma-gall-lymph-tonsil-gastric-transitionalcell	0
C147-Neutrophils-Eosinophils-CD4-CD14-CD8-Natural-Peripheral	0
C148-kidney-small-epididymis-pancreas-serous-duodenum-temporal	0
C149-occipital-medial-brain-amygdala-parietal-cerebral-cerebellum	0
C15-anaplastic-small-skeletal-neuroblastoma-parietal-temporal-tongue	0
C150-merkel-carcinoid-nonsmall-gastrointestinal-argyrophil-pineal-small	0
C151-CD14-Natural-Basophils-CD8-Eosinophils-CD4-Mast	0.0542
C152-peripheral-neuroectodermal-neuroepithelioma-neuroblastoma-testicular-carcinoid-lung	0
C153-rhabdomyosarcoma-liposarcoma-pancreatic-somatostatinoma-Reticulocytes-lymphoma-testicular	0
C154-adenocarcinoma-Mesenchymal-Cardiac-small-sacrococcigeal-Smooth-Prostate	0
C155-pituitary-placenta-nonsmall-cervical-smallcell-choriocarcinoma-epitheloid	0
C156-plasma-splenic-hereditary-B-large-xeroderma-b	0
C157-testicular-H9-testis-iPS-teratocarcinoma-colon-trachea	0
C158-adrenal-gastric-temporal-parietal-duodenum-caudate-putamen	0
C159-choriocarcinoma-pancreatic-placenta-chorionic-testicular-bronchioalveolar-seminal	0
C16-medial-amygdala-occipital-parietal-olfactory-putamen-brain	0
C160-medulla-Hepatocyte-retina-corpus-liver-pineal-cerebral	0
C161-mesothelioma-Mesothelial-acute-mesenchymal-extraskeletal-renal-placenta	0
C162-spinal-locus-medulla-substantia-thalamus-globus-diencephalon	0
C163-Skeletal-skeletal-Pericytes-Hepatic-rhabdomyosarcoma-throat-mesenchymal	0
C164-signet-corpus-optic-mucinous-substantia-salivary-choriocarcinoma	0
C165-epithelioid-Adipocyte-mesothelioma-myxofibrosarcoma-lung-gastric-Mesothelial	0
C166-Macrophage-Monocytederived-Dendritic-adipose-lymph-CD14-lung	0
C167-Basophils-Mast-Eosinophils-Neutrophils-Peripheral-Whole-CD4	0
C168-Mast-CD14-immature-Basophils-Eosinophils-CD34-Peripheral	0
C169-hereditary-adult-gall-lymphangiectasia-chronic-b-choriocarcinoma	0
C17-Mast-CD14-Monocytederived-Lymphatic-Smooth-mesenchymal-Macrophage	0
C170-epitheloid-cervical-Hep2-keratoacanthoma-adult-neuroblastoma-signet	0
C171-merkel-neuroblastoma-pineal-retinoblastoma-carcinoid-small-eye	0
C172-chorionic-skeletal-tongue-amniotic-liver-gastrointestinal-Pericytes	0
C173-Adipocyte-mature-skin-left-Hepatocyte-Osteoblast-adipose	0
C174-CD14-Neutrophils-Smooth-mesothelioma-embryonic-Monocytederived-Eosinophils	0
C175-Eosinophils-Neutrophils-CD4-Basophils-CD19-CD8-Natural	0.0757
C176-Eosinophils-Neutrophils-Mast-CD14-CD4-Basophils-CD19	0.181
C177-melanoma-Melanocyte-mesenchymal-retina-Mallassezderived-Gingival-squamous	0
C178-spleen-liver-Hepatocyte-b-lymph-vein-thymus	0
C179-CD19-Peripheral-lymphoma-blood-lymph-spleen-tonsil	0
C18-CD4-CD8-thymus-Whole-Peripheral-Natural-blood	0
C180-skeletal-heart-Hepatocyte-acute-occipital-hippocampus-middle	-0.0199
C181-liposarcoma-somatostatinoma-neuroblastoma-mesothelioma-nonsmall-small-Alveolar	0
C182-renal-mature-mesothelioma-lung-Mammary-Adipocyte-acute	0
C183-acute-non-CD34-diffuse-CD133-myeloma-Burkitt	0
C184-somatostatinoma-smallcell-nonsmall-small-gastrointestinal-pineal-thyroid	0
C185-small-adrenal-gastric-Mesenchymal-acute-HES3GFP-testis	0
C186-squamous-papillotubular-large-Tracheal-oral-Small-epidermoid	0
C187-migratory-immature-Dendritic-CD19-CD14-Monocytederived-Macrophage	1.013
C188-left-heart-tongue-skeletal-Skeletal-diaphragm-throat	0
C189-b-splenic-tonsil-CD19-lymph-appendix-spleen	0
C19-embryonic-testis-cord-chronic-CD14-NK-mesothelioma	0
C190-colon-small-rectum-duodenum-appendix-temporal-oral	0
C191-leiomyoblastoma-Mast-parietal-acute-bone-neuroepithelioma-embryonic	0
C192-Neutrophils-CD14-Peripheral-Eosinophils-CD8-Natural-CD4	0
C193-Mesenchymal-Adipocyte-mature-Cardiac-heart-CD14CD16-CD14	0
C194-MCF7-breast-prostate-Intestinal-diffuse-Wilms-Alveolar	0
C195-Small-Gingival-Bronchial-Smooth-mesenchymal-Urothelial-Tracheal	0
C196-testicular-iPS-H9-teratocarcinoma-HES3GFP-choriocarcinoma-endometrial	0
C197-tongue-esophagus-tonsil-salivary-cervix-nasal-Gingival	0
C198-Mesenchymal-Hair-Hepatic-Fibroblast-Smooth-tenocyte-Pericytes	0
C199-glioblastoma-B-osteosarcoma-Fibroblast-heart-rhabdomyosarcoma-myxofibrosarcoma	0
C2-Eosinophils-Neutrophils-CD14-Whole-Basophils-Peripheral-Mast	0
C20-heart-left-skeletal-diaphragm-tongue-umbilical-throat	0
C200-seminal-Cardiac-Smooth-Hair-submaxillary-Neutrophils-mixed	0.00941
C201-colon-small-adenocarcinoma-duodenum-temporal-signet-gall	0
C202-salivary-skin-penis-tongue-uterus-cervical-immature	0
C203-acute-NK-chronic-CD133-lymphoma-immature-Dendritic	0
C204-Smooth-nasal-CD4-CD19-CD8-CD14-CD34	0
C205-mycosis-cord-hairy-xeroderma-CD4-B-b	0
C206-melanoma-somatostatinoma-nonsmall-small-neuroblastoma-smallcell-pituitary	0
C207-Corneal-Keratinocyte-Esophageal-Mammary-Bronchial-Urothelial-Sebocyte	0
C208-skin-amniotic-papillotubular-salivary-umbilical-Alveolar-serous	0
C209-acute-myelodysplastic-CD34-granulocyte-CD133-liver-spleen	0
C21-cord-mycosis-hairy-xeroderma-adult-CD4-anaplastic	0
C210-Burkitt-lymphoma-appendix-acute-diffuse-CD19-tonsil	0
C211-small-Hepatocyte-liver-colon-temporal-duodenum-kidney	0
C212-chronic-acute-Whole-Reticulocytes-leukemia-blood-CD34	0
C213-CD14-Natural-CD8-CD4-Basophils-Eosinophils-Peripheral	0.0376
C214-Neurons-Neural-duodenum-temporal-occipital-parietal-brain	0
C215-chronic-acute-peripheral-Hepatocyte-osteosarcoma-NK-immature	0
C216-osteosarcoma-Smooth-Mesenchymal-large-neuroectodermal-acute-CD34	0
C217-carcinoid-neuroectodermal-mature-mesodermal-colon-acute-occipital	0
C218-tonsil-lymph-CD19-spleen-colon-appendix-salivary	0
C219-nasal-Basophils-amniotic-Melanocyte-CD14-Osteoblast-duodenum	0
C22-CD4-CD8-Natural-Basophils-CD14-Peripheral-CD19	0
C220-Adipocyte-mature-left-breast-skin-liver-adipose	0
C221-alveolar-Osteoblast-Myoblast-mesenchymal-liposarcoma-Smooth-hepatocellular	0
C222-Melanocyte-Tracheal-Neutrophils-seminal-Smooth-Hair-Chondrocyte	-0.0507
C223-Chondrocyte-basal-renal-Fibroblast-Smooth-spindle-Synoviocyte	0
C224-clear-serous-pleomorphic-choriocarcinoma-mesothelioma-amniotic-renal	0
C225-ductal-alveolar-giant-prostate-salivary-squamous-Tracheal	0
C226-Corneal-Keratinocyte-Esophageal-Urothelial-Mammary-Bronchial-Tracheal	0
C227-chorionic-amniotic-Mesenchymal-Placental-gastric-diaphragm-tongue	0
C228-colon-Intestinal-Prostate-hepatoblastoma-hepatocellular-testis-adult	0
C229-Mesenchymal-CD4-Melanocyte-acute-skeletal-left-heart	0
C23-CD4-CD8-Natural-Peripheral-Basophils-CD19-CD14	0
C230-aorta-normal-heart-penis-osteosarcoma-basal-lung	0
C231-Mesothelial-mesenchymal-mesothelioma-Fibroblast-Preadipocyte-leiomyoma-mycosis	0
C232-teratocarcinoma-HES3GFP-H9-iPS-testicular-neuroblastoma-cerebellum	0
C233-uterus-cervix-ovary-epididymis-colon-rectum-MCF7	0
C234-oral-epidermoid-malignant-cervical-ductal-lung-keratoacanthoma	0
C235-Intestinal-Prostate-liver-colon-small-kidney-pancreas	0
C236-CD14-Neutrophils-Monocytederived-renal-Eosinophils-testis-mesothelioma	0
C237-acute-breast-testicular-hepatoblastoma-chronic-argyrophil-Bronchial	0
C238-stomach-gall-breast-duodenum-temporal-MCF7-smallcell	0
C239-CD4-lymphangiectasia-CD8-NK-mycosis-Renal-hairy	0
C24-pineal-eye-retina-retinoblastoma-medulloblastoma-small-cerebral	0
C240-Adipocyte-Preadipocyte-Osteoblast-Chondrocyte-tenocyte-Synoviocyte-mesenchymal	0
C241-Reticulocytes-chronic-Tracheal-Hodgkin-Endothelial-Hair-thymus	-0.277
C242-acute-Chondrocyte-myelodysplastic-granulocyte-biphenotypic-Fibroblast-stomach	0
C243-Chondrocyte-trachea-Synoviocyte-mesodermal-renal-Fibroblast-Ewing	0
C244-CD14-Monocytederived-Hepatocyte-heart-Neutrophils-acute-Macrophage	0
C245-prostate-penis-salivary-esophagus-kidney-Neutrophils-Pancreatic	0
C246-Neutrophils-Eosinophils-Whole-CD14-CD14CD16-Basophils-migratory	0.26
C247-pons-locus-medulla-spinal-paracentral-medial-occipital	0
C248-iPS-Aortic-Hep2-amygdala-acute-medial-Myoblast	0.547
C249-nonsmall-small-smallcell-occipital-somatostatinoma-maxillary-medial	0
C25-small-colon-temporal-duodenum-liver-Hepatocyte-gall	0
C250-Mast-Neutrophils-CD14-Eosinophils-CD8-Peripheral-CD4	0.0542
C251-gall-tonsil-trachea-CD14-salivary-throat-tongue	0
C252-hepatic-Olfactory-sacrococcigeal-leiomyoma-normal-Synoviocyte-glioblastoma	0
C253-spleen-rhabdomyosarcoma-Hepatocyte-small-uterus-liver-rectum	0
C254-prostate-rhabdomyosarcoma-seminal-Fibroblast-transitionalcell-Smooth-Iris	0
C255-Wilms-leiomyoblastoma-kidney-adrenal-MCF7-epithelioid-Mast	0
C256-occipital-caudate-amygdala-medial-thalamus-hippocampus-medulla	0
C257-pineal-insula-frontal-occipital-temporal-medial-paracentral	0
C258-hepatoblastoma-hepatocellular-signet-colon-Intestinal-Prostate-gastric	0
C259-Preadipocyte-Adipocyte-Fibroblast-Chondrocyte-tenocyte-normal-Ewing	0
C26-Eosinophils-Neutrophils-CD14-CD14CD16-Basophils-Monocytederived-Whole	0.0542
C260-acute-chronic-Natural-NK-Basophils-biphenotypic-blood	0
C261-locus-medial-parietal-pons-diencephalon-olfactory-spinal	0
C262-breast-MCF7-skeletal-Reticulocytes-mucinous-hepatoblastoma-Wilms	0
C263-cervical-keratoacanthoma-tongue-skin-esophagus-throat-tonsil	0
C264-giant-keratoacanthoma-colon-fibrosarcoma-HES3GFP-Hep2-acute	0
C265-CD4-Eosinophils-CD14-Natural-CD19-Basophils-CD8	0.0677
C266-acute-chronic-leukemia-small-choriocarcinoma-hepatoma-Mast	0
C267-pancreatic-placenta-choriocarcinoma-testicular-teratocarcinoma-chorionic-clear	0
C268-Mallassezderived-Urothelial-Gingival-Small-Bronchial-Tracheal-Prostate	0
C269-Basophils-Mast-Eosinophils-mature-CD14-chorionic-CD4	0
C27-pancreas-temporal-duodenum-salivary-ductus-umbilical-lung	0
C270-CD4-Fibroblast-acute-iPS-Aortic-CD34-Smooth	0.193
C271-pineal-spinal-locus-globus-medulla-thalamus-cerebellum	0
C272-CD19-CD4-CD8-Whole-Peripheral-lymph-tonsil	0
C273-Neutrophils-CD14-Eosinophils-Monocytederived-CD4-Natural-Mast	0
C274-CD14-Mast-immature-Basophils-mature-vagina-Hepatocyte	0
C275-pons-medulla-cerebellum-locus-thalamus-diencephalon-spinal	0
C276-mesothelioma-kidney-renal-small-clear-cerebellum-Renal	0
C277-mesothelioma-epithelioid-thyroid-extraskeletal-alveolar-glioblastoma-adenocarcinoma	0
C278-amygdala-hippocampus-insula-medial-putamen-temporal-olfactory	0
C279-parietal-cerebellum-occipital-temporal-middle-duodenum-medial	0
C28-thymus-acute-vein-Hodgkin-chronic-throat-Dendritic	0
C280-Mast-Natural-CD19-CD8-Eosinophils-CD34-CD4	0.0542
C281-Hodgkin-Reticulocytes-chronic-NK-acute-retinoblastoma-small	-0.459
C282-acute-B-tonsil-CD19-submaxillary-lymph-throat	0
C283-tenocyte-Chondrocyte-mesenchymal-Macrophage-pleomorphic-Synoviocyte-cholangiocellular	0
C284-parietal-occipital-medial-temporal-olfactory-locus-hippocampus	0
C285-cervical-Hep2-small-colon-temporal-duodenum-bronchogenic	0
C286-cerebellum-occipital-optic-parietal-globus-caudate-medial	0
C287-Hepatocyte-Chondrocyte-Adipocyte-Synoviocyte-liver-tenocyte-mesenchymal	0
C288-Chondrocyte-Renal-Pericytes-Fibroblast-aorta-Smooth-Meningeal	0
C289-chorionic-skeletal-heart-Mast-amniotic-granulosa-left	0
C29-mature-adipose-Adipocyte-breast-Lymphatic-vein-heart	0
C290-Eosinophils-CD14-Basophils-Mast-CD4-CD8-immature	0.0951
C291-spinal-substantia-retina-medulla-tongue-skeletal-trachea	0
C292-Mesenchymal-skin-umbilical-Adipocyte-mesenchymal-Chondrocyte-skeletal	0
C293-CD14-CD14CD16-Basophils-Peripheral-immature-Eosinophils-CD34	0
C294-CD14-Macrophage-Monocytederived-CD14CD16-Neutrophils-Basophils-Peripheral	0
C295-Fibroblast-Smooth-Myoblast-Chondrocyte-hepatic-Synoviocyte-Preadipocyte	0
C296-gall-small-mesothelioma-acute-bronchioalveolar-epidermoid-mixed	0
C297-Eosinophils-CD4-Basophils-Natural-Neutrophils-CD8-Peripheral	0.052
C298-small-optic-substantia-thalamus-diencephalon-globus-occipital	0
C299-CD14CD16-Eosinophils-Neutrophils-CD14-Whole-Basophils-blood	0
C3-occipital-temporal-insula-medial-postcentral-frontal-amygdala	0
C30-thyroid-throat-mesothelioma-mucinous-trachea-chorionic-mesenchymal	0
C300-CD4-CD8-NK-Natural-blood-mycosis-Basophils	0
C301-Smooth-mesenchymal-Endothelial-Hepatic-basal-hepatic-chorionic	0
C302-acute-peripheral-Neutrophils-NK-myelodysplastic-CD34-carcinoid	0
C303-CD14-Basophils-Peripheral-Eosinophils-CD14CD16-Neutrophils-Whole	0
C305-heart-skeletal-smooth-left-bladder-penis-esophagus	0
C31-skeletal-tongue-diaphragm-throat-penis-skin-trachea	0
C32-middle-occipital-parietal-hippocampus-amygdala-medial-olfactory	0
C33-Reticulocytes-liver-Whole-blood-chronic-acute-spleen	0
C34-placenta-chorionic-choriocarcinoma-mesothelioma-Wilms-Smooth-bile	0
C35-caudate-putamen-diencephalon-nucleus-globus-thalamus-insula	0
C36-B-b-splenic-plasma-xeroderma-adrenal-Burkitt	0
C37-salivary-submaxillary-parotid-seminal-tongue-ductus-trachea	0
C38-extraskeletal-rhabdomyosarcoma-adrenal-rectal-mesothelioma-lung-Wilms	0
C39-epididymis-ductus-seminal-testis-acute-thyroid-CD133	0
C4-optic-corpus-substantia-medulla-spinal-thalamus-globus	0
C40-eye-retina-Lens-pineal-tongue-retinoblastoma-small	0
C41-retina-eye-medulla-Retinal-medulloblastoma-kidney-pineal	0
C42-small-lung-maxillary-pharyngeal-Mesenchymal-Wilms-colon	0
C43-ductus-seminal-duodenum-temporal-gall-prostate-bladder	0
C44-Dendritic-CD19-CD133-granulocyte-acute-thymus-immature	0
C45-testicular-choriocarcinoma-H9-teratocarcinoma-Wilms-pancreatic-iPS	0
C46-acute-Hodgkin-thymus-CD8-chronic-CD4-merkel	0
C47-CD19-Burkitt-acute-xeroderma-tonsil-lymphoma-appendix	0
C48-smooth-bladder-esophagus-colon-penis-aorta-uterus	0
C49-H9-iPS-testicular-HES3GFP-teratocarcinoma-hepatoblastoma-choriocarcinoma	0
C5-Hepatocyte-liver-hepatocellular-Intestinal-kidney-small-pancreas	0
C50-chorionic-placenta-amniotic-migratory-smallcell-chronic-choriocarcinoma	0
C51-kidney-mesothelioma-renal-signet-gall-lung-pancreas	0
C52-adult-NK-chronic-cord-testis-embryonic-myeloma	0
C53-medulloblastoma-pineal-retinoblastoma-small-retina-eye-pituitary	0
C54-Dendritic-Macrophage-Monocytederived-CD14-leiomyoma-adipose-immature	0
C55-hepatocellular-Intestinal-liver-Prostate-fibrosarcoma-Hepatocyte-hepatoblastoma	0
C56-heart-left-umbilical-skeletal-penis-diaphragm-tongue	0
C57-Neutrophils-Eosinophils-Whole-CD4-CD8-CD19-Natural	0.152
C58-Melanocyte-melanoma-retina-Retinal-eye-migratory-H9	0
C59-Smooth-Fibroblast-Mesenchymal-tenocyte-Ewing-skin-hepatic	0
C6-CD14-Eosinophils-Basophils-Peripheral-CD34-Natural-immature	0
C60-esophagus-tonsil-throat-tongue-uterus-cervix-cervical	0
C61-migratory-Dendritic-immature-Macrophage-xeroderma-cord-b	0.905
C62-Burkitt-tonsil-CD19-submaxillary-spleen-salivary-lymph	0
C63-neuroectodermal-neuroblastoma-carcinoid-peripheral-chronic-neuroepithelioma-acute	0
C64-Mast-chronic-acute-immature-chorionic-Basophils-Dendritic	0
C65-CD14-Eosinophils-Monocytederived-Basophils-immature-Macrophage-Neutrophils	0
C66-cerebellum-middle-occipital-parietal-medial-amygdala-hippocampus	0
C67-CD14-Monocytederived-Macrophage-dura-Dendritic-spleen-lung	0
C68-amniotic-chorionic-Placental-salivary-placenta-tongue-mesothelioma	0
C69-anaplastic-CD14-cord-hairy-mycosis-adult-NK	0
C7-CD14-Eosinophils-Neutrophils-Smooth-Basophils-Macrophage-Mast	0
C70-parotid-submaxillary-salivary-throat-trachea-aorta-tongue	0
C71-Monocytederived-Macrophage-CD14-Dendritic-Osteoblast-leiomyoma-Prostate	0
C72-skeletal-tongue-throat-heart-diaphragm-penis-left	0
C73-pineal-eye-retina-caudate-cerebellum-left-parietal	0
C74-splenic-B-b-plasma-xeroderma-lymphoma-hairy	0
C75-Eosinophils-Natural-CD8-Basophils-CD14-CD4-Peripheral	0
C76-argyrophil-gastrointestinal-temporal-duodenum-neuroblastoma-merkel-smallcell	0
C77-Saos2-osteosarcoma-Neutrophils-Natural-Chondrocyte-Basophils-CD8	0
C78-lymphoma-plasma-tonsil-appendix-lymph-seminal-trachea	0
C79-chorionic-Chondrocyte-Cardiac-Smooth-Fibroblast-Preadipocyte-Mesenchymal	0
C8-Natural-CD8-Basophils-CD4-CD14-Peripheral-CD34	0
C80-immature-migratory-CD14-Dendritic-splenic-cord-Mast	0.102
C81-trachea-salivary-throat-aorta-eye-submaxillary-parotid	0
C82-Basophils-CD14-Eosinophils-Natural-Peripheral-immature-CD34	0
C83-choriocarcinoma-pancreatic-placenta-chorionic-HES3GFP-testicular-amniotic	0
C84-choriocarcinoma-pancreatic-Wilms-Mallassezderived-thymus-salivary-colon	0
C85-neuroblastoma-carcinoid-retinoblastoma-small-pineal-rhabdomyosarcoma-medulloblastoma	0
C86-colon-carcinoid-small-neuroectodermal-giant-large-neuroepithelioma	0
C87-retinoblastoma-left-nonsmall-heart-small-diaphragm-bronchogenic	0
C88-Melanocyte-melanoma-Macrophage-Mesenchymal-migratory-Dendritic-Monocytederived	0
C89-small-retinoblastoma-medulloblastoma-iPS-acantholytic-eye-bronchogenic	0
C9-skeletal-diaphragm-tongue-throat-penis-heart-left	0
C90-neuroectodermal-peripheral-neuroepithelioma-neuroblastoma-carcinoid-parietal-putamen	0
C91-Fibroblast-Smooth-mesenchymal-Mesothelial-Small-Preadipocyte-Hair	0
C92-CD14CD16-CD14-Eosinophils-Basophils-Neutrophils-Macrophage-Whole	0
C93-chronic-acute-leukemia-acantholytic-medulloblastoma-testis-papillotubular	0
C94-smallcell-adrenal-lung-nonsmall-small-somatostatinoma-teratocarcinoma	0
C95-lung-aorta-trachea-penis-Alveolar-throat-endometrioid	0
C96-non-acute-tonsil-spleen-Burkitt-lymphoma-appendix	0
C97-small-smallcell-gastrointestinal-argyrophil-putamen-duodenum-brain	0
C98-CD8-Natural-Basophils-blood-CD4-Peripheral-Whole	0
C99-hairy-mycosis-submaxillary-salivary-cord-kidney-parotid	0

Repeat families with enriched expression in this sampleSummary:Ranked list of repeat family expression in this sample relative tothe median expression in the FANTOM5 collection is shown. Value is log10transformed. Analyst:NA link to dataset. data

TFBS(DNA)motifs over-represented in proximal region of promoters active in this sample

JASPAR motifsSummary:Association of JASPAR motif to the promoter expression in thissample. Pearson's correlation between the number of TFBSs estimated byusing the position-weight matrix for each promoter and its expression isexpressed as Z-score by taking the ones based on random position-weightmatrix, and the tail probability of the normal distribution correspondingto the Z-score is taken as the resulting P-value. Lower P-value indicatesmore (non-random) association of the motif to promoter expression Analyst: Michiel de Hoon link to dataset. data

library id: CNhs13536

Jaspar motif	Logo	P-value
MA0002.2	MA0002.2	4.10112e-5
MA0003.1	MA0003.1	0.944
MA0004.1	MA0004.1	0.359
MA0006.1	MA0006.1	0.617
MA0007.1	MA0007.1	0.891
MA0009.1	MA0009.1	0.179
MA0014.1	MA0014.1	0.244
MA0017.1	MA0017.1	0.00325
MA0018.2	MA0018.2	0.584
MA0019.1	MA0019.1	0.631
MA0024.1	MA0024.1	0.0522
MA0025.1	MA0025.1	0.133
MA0027.1	MA0027.1	0.951
MA0028.1	MA0028.1	0.71
MA0029.1	MA0029.1	0.599
MA0030.1	MA0030.1	0.854
MA0031.1	MA0031.1	0.486
MA0035.2	MA0035.2	0.332
MA0038.1	MA0038.1	0.357
MA0039.2	MA0039.2	0.00436
MA0040.1	MA0040.1	0.777
MA0041.1	MA0041.1	0.809
MA0042.1	MA0042.1	0.913
MA0043.1	MA0043.1	0.109
MA0046.1	MA0046.1	0.361
MA0047.2	MA0047.2	0.139
MA0048.1	MA0048.1	0.808
MA0050.1	MA0050.1	0.0618
MA0051.1	MA0051.1	0.334
MA0052.1	MA0052.1	0.325
MA0055.1	MA0055.1	0.817
MA0057.1	MA0057.1	0.647
MA0058.1	MA0058.1	0.321
MA0059.1	MA0059.1	0.428
MA0060.1	MA0060.1	0.864
MA0061.1	MA0061.1	2.0737e-16
MA0062.2	MA0062.2	0.00559
MA0065.2	MA0065.2	0.0127
MA0066.1	MA0066.1	0.883
MA0067.1	MA0067.1	0.0196
MA0068.1	MA0068.1	0.0737
MA0069.1	MA0069.1	0.687
MA0070.1	MA0070.1	0.233
MA0071.1	MA0071.1	0.109
MA0072.1	MA0072.1	0.37
MA0073.1	MA0073.1	0.542
MA0074.1	MA0074.1	0.595
MA0076.1	MA0076.1	0.874
MA0077.1	MA0077.1	0.544
MA0078.1	MA0078.1	0.629
MA0079.2	MA0079.2	0.584
MA0080.2	MA0080.2	5.0345e-8
MA0081.1	MA0081.1	0.0648
MA0083.1	MA0083.1	0.00222
MA0084.1	MA0084.1	0.0743
MA0087.1	MA0087.1	0.439
MA0088.1	MA0088.1	0.317
MA0090.1	MA0090.1	0.00342
MA0091.1	MA0091.1	0.706
MA0092.1	MA0092.1	0.802
MA0093.1	MA0093.1	0.271
MA0099.2	MA0099.2	0.0321
MA0100.1	MA0100.1	0.592
MA0101.1	MA0101.1	9.49061e-13
MA0102.2	MA0102.2	0.717
MA0103.1	MA0103.1	0.125
MA0104.2	MA0104.2	0.27
MA0105.1	MA0105.1	8.54809e-15
MA0106.1	MA0106.1	0.642
MA0107.1	MA0107.1	1.46951e-16
MA0108.2	MA0108.2	8.4274e-4
MA0111.1	MA0111.1	0.314
MA0112.2	MA0112.2	0.00402
MA0113.1	MA0113.1	0.896
MA0114.1	MA0114.1	0.0132
MA0115.1	MA0115.1	0.148
MA0116.1	MA0116.1	0.00211
MA0117.1	MA0117.1	0.322
MA0119.1	MA0119.1	0.997
MA0122.1	MA0122.1	0.271
MA0124.1	MA0124.1	0.427
MA0125.1	MA0125.1	0.485
MA0131.1	MA0131.1	0.915
MA0135.1	MA0135.1	0.787
MA0136.1	MA0136.1	6.34737e-5
MA0137.2	MA0137.2	0.865
MA0138.2	MA0138.2	0.224
MA0139.1	MA0139.1	0.129
MA0140.1	MA0140.1	0.384
MA0141.1	MA0141.1	0.0116
MA0142.1	MA0142.1	0.329
MA0143.1	MA0143.1	0.294
MA0144.1	MA0144.1	0.963
MA0145.1	MA0145.1	0.125
MA0146.1	MA0146.1	0.105
MA0147.1	MA0147.1	0.346
MA0148.1	MA0148.1	0.976
MA0149.1	MA0149.1	0.295
MA0150.1	MA0150.1	1.98451e-4
MA0152.1	MA0152.1	0.0874
MA0153.1	MA0153.1	0.0476
MA0154.1	MA0154.1	8.08174e-4
MA0155.1	MA0155.1	0.193
MA0156.1	MA0156.1	0.0425
MA0157.1	MA0157.1	0.162
MA0159.1	MA0159.1	0.0175
MA0160.1	MA0160.1	0.00146
MA0162.1	MA0162.1	0.963
MA0163.1	MA0163.1	0.0339
MA0164.1	MA0164.1	0.621
MA0258.1	MA0258.1	0.0337
MA0259.1	MA0259.1	0.609

FANTOM5 phase1 novel unique motifsSummary:Association of the 169 novel and unique motifs discovered in FANTOM5 phase1 in this sample. Among the de-novo motifs discovered by DMF, HOMER,ChIPMunk, and ScanAll, only novel motifs are selected after comparison with known motif sets, and their clustering based on MACRO-APE resulted in169 novel and unique motifs. Their association to the promoter expression is evaluated in the same way to the JASPAR motif above Analyst: Michiel de Hoon link to dataset. data

library id: CNhs13536

Novel motif	Logo	P-value
1	1	0.0487
10	10	0.0526
100	100	0.659
101	101	0.451
102	102	0.427
103	103	0.0269
104	104	0.68
105	105	0.0837
106	106	0.00599
107	107	0.68
108	108	0.768
109	109	0.0329
11	11	0.158
110	110	0.397
111	111	0.0792
112	112	0.0304
113	113	0.897
114	114	0.0125
115	115	0.165
116	116	0.811
117	117	0.0128
118	118	0.181
119	119	0.0102
12	12	0.367
120	120	0.61
121	121	0.75
122	122	0.614
123	123	0.596
124	124	0.127
125	125	0.928
126	126	0.0747
127	127	0.0855
128	128	0.0157
129	129	0.19
13	13	0.0898
130	130	0.837
131	131	0.659
132	132	0.57
133	133	0.905
134	134	0.949
135	135	0.353
136	136	0.392
137	137	0.0247
138	138	0.809
139	139	0.237
14	14	0.553
140	140	0.0104
141	141	0.924
142	142	0.2
143	143	0.119
144	144	0.691
145	145	0.366
146	146	0.684
147	147	0.286
148	148	0.0214
149	149	0.831
15	15	0.0261
150	150	0.368
151	151	0.621
152	152	0.45
153	153	0.532
154	154	0.524
155	155	0.0659
156	156	0.498
157	157	0.708
158	158	0.298
159	159	0.297
16	16	0.319
160	160	0.934
161	161	0.22
162	162	0.651
163	163	0.98
164	164	0.617
165	165	0.141
166	166	0.68
167	167	0.849
168	168	0.649
169	169	0.112
17	17	0.691
18	18	0.345
19	19	0.837
2	2	0.917
20	20	0.276
21	21	0.606
22	22	0.536
23	23	0.249
24	24	0.77
25	25	0.284
26	26	0.219
27	27	0.8
28	28	0.476
29	29	0.11
3	3	0.138
30	30	0.592
31	31	0.624
32	32	0.285
33	33	0.359
34	34	0.817
35	35	0.488
36	36	0.118
37	37	0.201
38	38	0.347
39	39	0.969
4	4	0.333
40	40	0.14
41	41	0.161
42	42	0.307
43	43	0.0794
44	44	0.0142
45	45	0.739
46	46	0.131
47	47	0.219
48	48	0.308
49	49	0.0668
5	5	0.548
50	50	0.956
51	51	0.304
52	52	0.0787
53	53	0.744
54	54	0.299
55	55	0.509
56	56	0.874
57	57	0.232
58	58	0.0577
59	59	0.185
6	6	0.939
60	60	0.0377
61	61	0.414
62	62	0.0483
63	63	0.466
64	64	0.483
65	65	0.371
66	66	0.0884
67	67	0.168
68	68	0.94
69	69	0.763
7	7	0.0647
70	70	0.0114
71	71	0.123
72	72	0.215
73	73	0.451
74	74	0.656
75	75	0.13
76	76	0.426
77	77	0.952
78	78	0.0488
79	79	0.971
8	8	0.463
80	80	0.739
81	81	0.382
82	82	0.157
83	83	0.147
84	84	0.299
85	85	0.221
86	86	0.255
87	87	0.0429
88	88	0.163
89	89	0.427
9	9	0.577
90	90	0.015
91	91	0.499
92	92	0.469
93	93	0.545
94	94	0.0657
95	95	0.0524
96	96	0.01
97	97	0.843
98	98	0.213
99	99	0.566

de novo motifs identified by HOMER in promoters active in this sampleSummary:The result of HOMER in this sample is shown. Analyst:NA library id: CNhs13536

FANTOM5 (FF) ontology

Direct parent terms

is_a relathionship
EFO:0002091 biological replicate
FF:0011136 human migratory langerhans cells sample

Ancestor terms (non development)Summary:Connected ontology terms with is_a, part_of or located_in relationship Analyst: Hideya Kawaji link to source data data

CL: Cell type
0000000 (cell), 0000000 (cell)
0000003 (native cell)
0000988 (hematopoietic cell)
0000548 (animal cell)
0002371 (somatic cell)
0000219 (motile cell)
0000738 (leukocyte)
0000990 (conventional dendritic cell)
0000255 (eukaryotic cell)
0000451 (dendritic cell)
0000453 (Langerhans cell)

FF: FANTOM5
0000102 (sample by type)
0000210 (human sample)
0000002 (in vivo cell sample)
0000101 (sample by species)
0000001 (sample)
0011136 (human migratory langerhans cells sample)

Ancestor terms (development)Summary:Connected ontology terms with develops_from, derives_from or preceded_by relationship Analyst: Hideya Kawaji link to source data data
CL:0000049 (common myeloid progenitor)
CL:0000134 (mesenchymal cell)

@@ Line 1: / Line 1: @@
 {{f5samples
-|ancestors_in_anatomy_facet=UBERON:0002384,UBERON:0000479,UBERON:0000061,UBERON:0000465,UBERON:0001062
+|DRA_sample_Accession=CAGE@SAMD00004915
-|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000144,CL:0000723,CL:0000048,CL:0000988,CL:0000548,CL:0000034,CL:0002032,CL:0000763,CL:0000012,CL:0002320,CL:0000063,CL:0002371,CL:0000219,CL:0000004,CL:0000134,CL:0000738,CL:0000990,CL:0000255,CL:0000451,CL:0000453,CL:0000037,CL:0000566,CL:0000049,CL:0000837
+|accession_numbers=CAGE;DRX008569;DRR009441;DRZ000866;DRZ002251;DRZ012216;DRZ013601
+|ancestors_in_anatomy_facet=
+|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000988,CL:0000548,CL:0002371,CL:0000219,CL:0000738,CL:0000990,CL:0000255,CL:0000451,CL:0000453
 |ancestors_in_disease_facet=
+|ancestors_in_ff_facet=FF:0000102,FF:0000210,FF:0000002,FF:0000101,FF:0000001,FF:0011136
 |comment=
 |created_by=
 |creation_date=
-|datafreeze_phase=1
+|data_phase=2
+|datafreeze_phase=2
 |def=
 |expression_enrichment_score=chr6:391743..391759,+!p1@IRF4!2.96!912.78!IRF4;;chr11:47400078..47400106,-!p1@SPI1!2.29!192.12!SPI1;;chr20:20348740..20348757,+!p1@INSM1!2.25!175.78!INSM1;;chr9:102584262..102584276,+!p1@NR4A3!1.88!162.23!NR4A3;;chr19:50922187..50922204,+!p1@SPIB!1.79!61.25!SPIB;;chr4:185395590..185395627,-!p3@IRF2!1.67!56.87!IRF2;;chr1:25291475..25291511,-!p2@RUNX3!1.67!46.10!RUNX3;;chr1:25256756..25256774,-!p1@RUNX3!1.64!78.92!RUNX3;;chr2:61108808..61108821,+!p3@REL!1.64!52.88!REL;;chr2:61108695..61108753,+!p1@REL!1.62!265.20!REL;;chr9:102584128..102584144,+!p3@NR4A3!1.60!72.81!NR4A3;;chr6:106534192..106534224,+!p1@PRDM1!1.51!86.63!PRDM1;;chr9:102584159..102584174,+!p2@NR4A3!1.50!54.47!NR4A3;;chr2:68592406..68592424,+!p1@PLEK!1.50!30.29!PLEK;;chr1:157108130..157108173,-!p1@ETV3!1.47!198.10!ETV3;;chr19:45252008..45252024,+!p2@BCL3!1.44!85.30!BCL3;;chr7:50344251..50344288,+!p3@IKZF1!1.44!26.44!IKZF1;;chr10:104155480..104155534,+!p2@NFKB2!1.42!160.10!NFKB2;;chr2:61108771..61108789,+!p4@REL!1.41!37.20!REL;;chr7:50343634..50343717,+!p2@IKZF1!1.41!24.98!IKZF1;;chr2:192015701..192015743,-!p1@STAT4!1.37!30.43!STAT4;;chr7:50344289..50344323,+!p1@IKZF1!1.37!22.32!IKZF1;;chr9:102584241..102584261,+!p4@NR4A3!1.35!32.82!NR4A3;;chr6:106534230..106534254,+!p2@PRDM1!1.34!52.08!PRDM1;;chr1:151319654..151319698,-!p2@RFX5!1.33!43.58!RFX5;;chr11:47400062..47400077,-!p2@SPI1!1.33!20.59!SPI1;;chr12:11802753..11802834,+!p2@ETV6!1.31!93.27!ETV6;;chr5:71803177..71803255,-!p1@ZNF366!1.31!19.27!ZNF366;;chr2:8822176..8822196,+!p1@ID2!1.28!2478.99!ID2;;chr19:45579725..45579743,-!p1@ZNF296!1.28!78.92!ZNF296;;chr4:185395633..185395651,-!p2@IRF2!1.28!28.57!IRF2;;chr15:90544532..90544563,+!p1@ZNF710!1.27!34.94!ZNF710;;chr10:35484053..35484076,+!p1@CREM!1.26!42.38!CREM;;chr2:214015343..214015366,-!p3@IKZF2!1.25!16.87!IKZF2;;chr1:8935472..8935488,-!p20@ENO1!1.21!15.28!ENO1;;chr2:214015111..214015179,-!p1@IKZF2!1.20!26.71!IKZF2;;chr2:169312725..169312810,+!p1@CERS6!1.19!348.24!CERS6;;chr16:31885093..31885165,+!p1@ZNF267!1.18!213.25!ZNF267;;chr4:103422499..103422632,+!p1@NFKB1!1.16!275.16!NFKB1;;chr19:3574157..3574180,+!p4@HMG20B!1.15!13.29!HMG20B;;chr9:102584278..102584285,+!p5@NR4A3!1.15!13.29!NR4A3;;chr10:104155659..104155676,+!p4@NFKB2!1.13!15.68!NFKB2;;chr7:150102756..150102772,+!p5@ZNF775!1.13!12.36!ZNF775;;chr2:61108878..61108891,+!p5@REL!1.12!12.22!REL;;chr1:157108746..157108762,-!p4@ETV3!1.10!11.69!ETV3;;chrX:56258844..56258882,+!p1@KLF8!1.09!15.68!KLF8;;chr19:50432132..50432217,+!p2@ATF5!1.08!13.02!ATF5;;chr13:41593425..41593480,-!p1@ELF1!1.07!68.16!ELF1;;chr19:50432453..50432468,+!p1@ATF5!1.04!568.53!ATF5;;chr9:117150254..117150271,-!p1@AKNA!1.04!27.90!AKNA;;chr11:47237922..47237964,+!p4@DDB2!1.04!11.43!DDB2;;chr12:27485785..27485816,+!p1@ARNTL2!1.03!69.09!ARNTL2;;chr2:61108650..61108687,+!p2@REL!1.01!46.50!REL;;chr16:85932760..85932775,+!p1@IRF8!1.01!9.17!IRF8;;chr4:103478257..103478273,+!p28@NFKB1!1.00!9.03!NFKB1;;chr19:3574330..3574393,+!p2@HMG20B!1.00!8.90!HMG20B;;chr2:74229812..74229867,+!p1@TET3!0.99!22.32!TET3;;chr20:62462566..62462631,-!p1@ZBTB46!0.99!17.01!ZBTB46;;chr7:106810484..106810494,+!p4@HBP1!0.99!8.77!HBP1;;chr19:45504688..45504782,+!p1@RELB!0.98!53.28!RELB;;chr10:104154246..104154347,+!p3@NFKB2!0.98!53.28!NFKB2;;chr6:12012170..12012245,+!p1@HIVEP1!0.98!43.98!HIVEP1;;chr10:51572339..51572376,+!p4@NCOA4!0.98!19.53!NCOA4;;chr1:212782094..212782109,+!p1@ATF3!0.95!225.34!ATF3;;chr12:54785074..54785122,-!p2@ZNF385A!0.94!11.96!ZNF385A;;chr2:192015750..192015793,-!p2@STAT4!0.94!10.63!STAT4;;chr3:12330560..12330579,+!p1@PPARG!0.93!8.77!PPARG;;chrX:56258900..56258917,+!p4@KLF8!0.93!7.57!KLF8;;chr15:50647274..50647336,-!p1@GABPB1!0.92!52.88!GABPB1;;chr9:117160738..117160782,-!p2@AKNA!0.92!31.22!AKNA;;chr1:221052776..221052799,+!p1@HLX!0.91!13.29!HLX;;chr11:13299319..13299424,+!p1@ARNTL!0.90!74.14!ARNTL;;chr10:3827371..3827386,-!p2@KLF6!0.90!60.72!KLF6;;chr5:321810..321877,+!p1@AHRR!0.90!22.85!AHRR;;chr12:27485823..27485868,+!p2@ARNTL2!0.89!28.96!ARNTL2;;chr7:17338324..17338341,+!p3@AHR!0.89!23.65!AHR;;chr3:101546827..101546847,+!p2@NFKBIZ!0.89!9.83!NFKBIZ;;chr2:214014959..214015006,-!p4@IKZF2!0.88!6.64!IKZF2;;chr22:41697484..41697496,+!p3@ZC3H7B!0.87!8.37!ZC3H7B;;chr1:6684918..6684936,+!p2@THAP3!0.87!7.97!THAP3;;chr1:221052840..221052875,+!p4@HLX!0.86!7.57!HLX;;chr7:50343895..50343936,+!p5@IKZF1!0.86!6.24!IKZF1;;chr2:214016254..214016282,-!p7@IKZF2!0.84!5.98!IKZF2;;chr11:47399996..47400014,-!p4@SPI1!0.84!5.98!SPI1;;chr14:89883509..89883587,-!p2@FOXN3!0.83!42.52!FOXN3;;chr12:27485762..27485776,+!p3@ARNTL2!0.83!16.48!ARNTL2;;chr1:157108764..157108776,-!p7@ETV3!0.83!5.71!ETV3;;chr2:239148671..239148686,-!p1@HES6!0.82!22.06!HES6;;chr22:41697497..41697515,+!p2@ZC3H7B!0.82!16.21!ZC3H7B;;chr2:231090433..231090469,+!p1@SP140!0.82!5.58!SP140;;chr12:54778471..54778528,-!p1@ZNF385A!0.82!5.58!ZNF385A;;chr3:5021113..5021180,+!p1@BHLHE40!0.81!408.69!BHLHE40;;chr6:12012249..12012266,+!p5@HIVEP1!0.81!9.83!HIVEP1;;chr19:3573282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A!0.59!2.92!STAT5A;;chr19:12273866..12273935,+!p1@ZNF136!0.58!30.69!ZNF136;;chr8:123793860..123793921,+!p2@ZHX2!0.58!8.90!ZHX2;;chr10:3824332..3824425,-!p4@KLF6!0.58!5.05!KLF6;;chr1:8935456..8935467,-!p27@ENO1!0.58!2.79!ENO1;;chr10:3827417..3827428,-!p3@KLF6!0.57!28.70!KLF6;;chr1:40915725..40915808,+!p1@ZNF643!0.57!9.43!ZNF643;;chr2:214016496..214016544,-!p5@IKZF2!0.57!4.12!IKZF2;;chr1:27023752..27023799,+!p4@ARID1A!0.57!3.85!ARID1A;;chr12:54785054..54785072,-!p4@ZNF385A!0.57!3.19!ZNF385A;;chr3:71114066..71114114,-!p1@FOXP1!0.56!67.10!FOXP1;;chr17:36861496..36861586,+!p1@MLLT6!0.56!31.62!MLLT6;;chr12:51566562..51566584,-!p2@TFCP2!0.56!8.64!TFCP2;;chr19:45250948..45250998,+!p3@BCL3!0.56!7.84!BCL3;;chr2:10091815..10091864,+!p1@GRHL1!0.56!3.72!GRHL1;;chr7:63505799..63505904,+!p1@ZNF727!0.56!2.66!ZNF727;;chr14:35873947..35873965,-!p1@NFKBIA!0.55!204.61!NFKBIA;;chr6:109804412..109804458,-!p1@ZBTB24!0.55!28.17!ZBTB24;;chrX:129244454..129244488,-!p1@ELF4!0.55!22.72!ELF4;;chr1:221052700..221052730,+!p5@HLX!0.55!4.25!HLX;;chr1:44679370..44679422,+!p3@DMAP1!0.55!3.59!DMAP1;;chr12:12764917..12764931,+!p4@CREBL2!0.55!3.59!CREBL2;;chrX:129244430..129244442,-!p5@ELF4!0.55!2.52!ELF4;;chr14:75988831..75988847,+!p2@BATF!0.55!2.52!BATF;;chr19:3576938..3576962,+!p9@HMG20B!0.55!2.52!HMG20B;;chr18:3450161..3450183,+!p1@TGIF1!0.54!108.42!TGIF1;;chr11:67007477..67007493,+!p2@KDM2A!0.54!26.44!KDM2A;;chr1:167190091..167190156,+!p1@POU2F1!0.54!24.45!POU2F1;;chr1:156470515..156470542,-!p2@MEF2D!0.54!16.21!MEF2D;;chr20:46130602..46130613,+!p3@NCOA3!0.54!8.50!NCOA3;;chr1:157108282..157108347,-!p3@ETV3!0.54!5.98!ETV3;;chr14:23755247..23755278,-!p2@HOMEZ!0.54!5.71!HOMEZ;;chr1:221053049..221053075,+!p3@HLX!0.54!4.78!HLX;;chr14:69259772..69259790,-!p1@ZFP36L1!0.53!317.95!ZFP36L1;;chr1:14075903..14075940,+!p1@PRDM2!0.53!66.03!PRDM2;;chr14:23755297..23755350,-!p1@HOMEZ!0.53!36.01!HOMEZ;;chrX:129402866..129402880,-!p1@ZNF280C!0.53!17.27!ZNF280C;;chr8:81398444..81398472,+!p1@ZBTB10!0.53!11.96!ZBTB10;;chr6:35227282..35227330,+!p2@ZNF76!0.53!10.89!ZNF76;;chr3:150126416..150126437,+!p3@TSC22D2!0.53!10.76!TSC22D2;;chr22:42229210..42229229,+!p3@SREBF2!0.53!6.64!SREBF2;;chr3:63898321..63898396,+!p3@ATXN7!0.53!6.38!ATXN7;;chr4:103422232..103422241,+!p6@NFKB1!0.53!3.06!NFKB1;;chr7:139762641..139762768,-!p1@PARP12!0.52!40.52!PARP12;;chr3:71179699..71179744,-!p2@FOXP1!0.52!22.06!FOXP1;;chr2:10183651..10183713,+!p1@KLF11!0.52!21.39!KLF11;;chr9:35732647..35732678,+!p2@CREB3!0.52!16.21!CREB3;;chr10:35484804..35484902,+!p2@CREM!0.52!10.89!CREM;;chr19:12444440..12444455,-!p1@ZNF563!0.52!4.52!ZNF563;;chr19:53039233..53039247,+!p2@ZNF808!0.52!3.85!ZNF808;;chr1:202777535..202777556,-!p1@KDM5B!0.51!97.66!KDM5B;;chr19:19932513..19932569,-!p1@ZNF506!0.51!54.87!ZNF506;;chr19:39390587..39390646,+!p1@NFKBIB!0.51!47.17!NFKBIB;;chr7:152133059..152133102,-!p1@MLL3!0.51!46.64!MLL3;;chr11:47236489..47236567,+!p2@DDB2!0.51!39.86!DDB2;;chr21:30671211..30671234,+!p3@BACH1!0.51!13.69!BACH1;;chr19:53073532..53073551,+!p1@ZNF701!0.51!12.76!ZNF701;;chr6:7108569..7108683,+!p3@RREB1!0.51!10.89!RREB1;;chr6:168227611..168227624,+!p2@MLLT4!0.51!3.59!MLLT4;;chr2:231090344..231090361,-!p3@SP110!0.51!2.26!SP110;;chr19:45251395..45251432,+!p8@BCL3!0.51!2.26!BCL3;;chr1:67396044..67396071,+!p3@MIER1!0.50!9.57!MIER1;;chr3:71179746..71179783,-!p7@FOXP1!0.50!9.03!FOXP1;;chr9:37465273..37465338,-!p2@ZBTB5!0.50!6.91!ZBTB5;;chr15:31619535..31619569,+!p5@KLF13!0.50!4.65!KLF13;;chr19:20011731..20011743,+!p3@ZNF93!0.50!3.06!ZNF93;;chr18:3452133..3452150,+!p19@TGIF1!0.50!2.52!TGIF1;;chr2:145274900..145274934,-!p4@ZEB2!0.49!16.48!ZEB2;;chr9:3525968..3526016,-!p1@RFX3!0.49!15.68!RFX3;;chr14:35872453..35872485,-!p2@NFKBIA!0.49!6.24!NFKBIA;;chr11:47235980..47236028,+!p3@DDB2!0.49!5.71!DDB2;;chr19:22235279..22235301,+!p1@ZNF257!0.49!4.65!ZNF257;;chr19:20011696..20011705,+!p4@ZNF93!0.49!2.52!ZNF93;;chrX:56258885..56258896,+!p5@KLF8!0.49!2.13!KLF8;;chr2:214016899..214016926,-!p10@IKZF2!0.49!2.13!IKZF2;;chr20:47894569..47894799,-!p1@ZNFX1!0.48!73.08!ZNFX1;;chr15:31619326..31619390,+!p2@KLF13!0.48!30.96!KLF13;;chr5:172483347..172483407,+!p1@C5orf41!0.48!20.46!CREBRF;;chr12:46123464..46123512,+!p1@ARID2!0.48!15.15!ARID2;;chr2:178128199..178128245,-!p3@NFE2L2!0.48!14.22!NFE2L2;;chr3:12329397..12329433,+!p2@PPARG!0.48!5.58!PPARG;;chr3:178789648..178789661,-!p4@ZMAT3!0.48!3.59!ZMAT3;;chr19:45254529..45254561,+!p10@BCL3!0.48!3.06!BCL3;;chr1:151319318..151319338,-!p3@RFX5!0.48!2.66!RFX5;;chr9:125667739..125667770,-!p4@RC3H2!0.48!2.39!RC3H2;;chr7:50344144..50344157,+!p6@IKZF1!0.48!1.99!IKZF1;;chr22:42229246..42229270,+!p2@SREBF2!0.47!33.35!SREBF2;;chr7:17338266..17338282,+!p1@AHR!0.47!28.43!AHR;;chr7:77428066..77428132,+!p2@PHTF2!0.47!16.87!PHTF2;;chr6:44233297..44233330,-!p2@NFKBIE!0.47!6.51!NFKBIE;;chr9:114287433..114287513,+!p1@ZNF483!0.47!6.24!ZNF483;;chr12:12764947..12764986,+!p2@CREBL2!0.47!4.52!CREBL2;;chr19:37341673..37341699,-!p3@ZNF790!0.47!3.99!ZNF790;;chr3:71630690..71630750,-!p11@FOXP1!0.47!3.72!FOXP1;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+|fantom_cat=http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000234;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000451;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000453;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000738;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000763;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000988;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000990
+|ffid_belonging_in_development=CL:0000049,CL:0000134
 |fonse_cell_line=
 |fonse_cell_line_closure=
@@ Line 36: / Line 42: @@
 |fonse_treatment_closure=
 |has_quality=
+|hg19bam=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/migratory%2520langerhans%2520cells%252c%2520donor2.CNhs13536.11902-125F3.hg19.nobarcode.bam
+|hg19ctss=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/migratory%2520langerhans%2520cells%252c%2520donor2.CNhs13536.11902-125F3.hg19.ctss.bed.gz
+|hg19fasta=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/migratory%2520langerhans%2520cells%252c%2520donor2.CNhs13536.11902-125F3.hg19.nobarcode.rdna.fa.gz
+|hg38bam=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.primary_cell.hCAGE/migratory%2520langerhans%2520cells%252c%2520donor2.CNhs13536.11902-125F3.hg38.nobarcode.bam
+|hg38ctss=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.primary_cell.hCAGE/migratory%2520langerhans%2520cells%252c%2520donor2.CNhs13536.11902-125F3.hg38.nobarcode.ctss.bed.gz
 |id=FF:11902-125F3
 |is_a=EFO:0002091;;FF:0011136
 |is_obsolete=
+|library_id=CNhs13536
+|library_id_phase_based=2:CNhs13536
+|microRNAs=
+|microRNAs_nn=
+|microRNAs_nonnovel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer/#/human#cage;sample;11902
+|microRNAs_novel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer_novel/#/human#cage;sample;11902
 |name=migratory langerhans cells, donor2
 |namespace=
@@ Line 44: / Line 61: @@
 |profile_cagescan=,,,
 |profile_hcage=CNhs13536,LSID1029,release012,COMPLETED
-|profile_rnaseq=,,,
+|profile_rnaseq=
 |profile_srnaseq=,,,
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 |rna_box=125
 |rna_catalog_number=
@@ Line 59: / Line 79: @@
 |rna_weight_ug=0.7838
 |sample_age=
+|sample_category=primary cells
 |sample_cell_catalog=
 |sample_cell_line=
@@ Line 75: / Line 96: @@
 |sample_note=
 |sample_sex=
-|sample_species=
+|sample_species=Human (Homo sapiens)
 |sample_strain=
 |sample_tissue=
 |top_motifs=FOX{F1,F2,J1}:2.11912514691;HSF1,2:1.86867766768;NFKB1_REL_RELA:1.42773237227;TLX2:1.34860115029;FOXP3:1.31714257941;FOXA2:1.0524641118;FOXN1:1.05221812718;SPZ1:1.02415817948;CDX1,2,4:0.983811093108;SREBF1,2:0.92276189151;RUNX1..3:0.865054945317;POU1F1:0.826297836974;PAX6:0.814755211148;NFIX:0.809752064974;ATF5_CREB3:0.802327217886;STAT5{A,B}:0.76243402151;OCT4_SOX2{dimer}:0.735691071556;ATF2:0.715372851337;EVI1:0.689842923108;CRX:0.652620937206;STAT1,3:0.624680708232;IRF1,2:0.601378402736;NANOG{mouse}:0.597618846471;HMX1:0.547698874129;BPTF:0.541637412709;SPI1:0.53479718905;FOSL2:0.478038314971;GLI1..3:0.474809800264;ESR1:0.461016891131;PAX2:0.452225234606;ESRRA:0.445841320276;DMAP1_NCOR{1,2}_SMARC:0.442195363254;RORA:0.438074687539;ARID5B:0.422820240503;NFE2L2:0.413490705292;HOXA9_MEIS1:0.408438448698;ZNF148:0.396427907128;ELF1,2,4:0.332430385154;PRRX1,2:0.318923327677;FOXQ1:0.317153333956;ZBTB16:0.314194027045;NFE2:0.302616583118;SPIB:0.297208911799;RFX2..5_RFXANK_RFXAP:0.283097437128;HNF4A_NR2F1,2:0.247053471338;PDX1:0.240967826934;CUX2:0.227186783672;SRF:0.220981179517;NKX2-2,8:0.208093366735;AHR_ARNT_ARNT2:0.197055175108;NKX6-1,2:0.195251176244;LMO2:0.192296270928;NR5A1,2:0.172799179152;JUN:0.172344634439;IKZF2:0.168266083763;EP300:0.159047984224;ETS1,2:0.153142151885;FOX{D1,D2}:0.143158492495;LHX3,4:0.13067734128;HAND1,2:0.117929105535;ATF4:0.0998016819886;GATA6:0.0979397233002;TGIF1:0.0934463714812;SNAI1..3:0.0921174252838;TFCP2:0.0902806242142;NFE2L1:0.0711071769833;HMGA1,2:0.0696667744339;BACH2:0.0632624859365;NANOG:0.0487020033057;ZEB1:0.0321808127267;MYB:0.0164972613693;POU3F1..4:-0.0107409976278;SOX2:-0.0175914574477;ALX4:-0.0255881929362;HOX{A6,A7,B6,B7}:-0.0385550985313;SOX5:-0.0417766992761;RXR{A,B,G}_{NR1H2,PPAR}dimers:-0.045258672492;RXRA_VDR{dimer}:-0.0480429518305;ALX1:-0.0575514385926;CREB1:-0.074701828102;YY1:-0.0786596516068;ELK1,4_GABP{A,B1}:-0.0882803183824;NFY{A,B,C}:-0.0896125987243;AR:-0.100301779303;MYFfamily:-0.112552187167;ZFP161:-0.118034982975;SP1:-0.124870721616;ZNF238:-0.12521051949;SOX17:-0.149312709349;POU2F1..3:-0.1496441849;HNF1A:-0.199073227866;IRF7:-0.2008376394;STAT2,4,6:-0.207264305546;PBX1:-0.208702375494;MAZ:-0.216323294177;PAX4:-0.22648379633;FOS_FOS{B,L1}_JUN{B,D}:-0.231496752237;FOXM1:-0.236143338896;NKX2-3_NKX2-5:-0.238341639504;TAL1_TCF{3,4,12}:-0.269757922227;MYOD1:-0.282304413273;TP53:-0.291982087721;ONECUT1,2:-0.30638562061;NRF1:-0.312102625897;MEF2{A,B,C,D}:-0.318753305278;XCPE1{core}:-0.330774980779;MTE{core}:-0.333849149137;ZNF143:-0.337825392248;NFIL3:-0.348759973864;MAFB:-0.349055269339;PAX8:-0.384348138442;ATF6:-0.389040811355;LEF1_TCF7_TCF7L1,2:-0.397039916547;SMAD1..7,9:-0.406461470765;MED-1{core}:-0.416189390335;VSX1,2:-0.41968791781;NHLH1,2:-0.427601477613;BREu{core}:-0.446777883088;GFI1B:-0.451450309693;AIRE:-0.470357617122;NFATC1..3:-0.487363661335;POU5F1:-0.494785484829;RFX1:-0.497107304981;NR1H4:-0.49869780464;HLF:-0.509295571811;MYBL2:-0.512031672503;HBP1_HMGB_SSRP1_UBTF:-0.513524615336;NR6A1:-0.522261910166;NKX3-1:-0.538670335008;TBP:-0.555091206865;FOXO1,3,4:-0.561859817324;EGR1..3:-0.5651224926;FOXP1:-0.566449957435;TFAP4:-0.56984136571;ZIC1..3:-0.589111230235;FOX{I1,J2}:-0.593950985805;TBX4,5:-0.635184735644;TFDP1:-0.635841055338;E2F1..5:-0.650436414963;CEBPA,B_DDIT3:-0.654219379502;EN1,2:-0.660982052007;HOX{A5,B5}:-0.661138764673;MTF1:-0.667259352671;UFEwm:-0.684260846937;HOX{A4,D4}:-0.696666994341;NKX3-2:-0.69771508232;EBF1:-0.723074559552;ZBTB6:-0.725565475443;PAX5:-0.746021719344;TFAP2{A,C}:-0.755578690007;XBP1:-0.766031400019;PAX3,7:-0.783271853731;TFAP2B:-0.797993301298;NR3C1:-0.807621632702;HES1:-0.829920382;CDC5L:-0.851433407549;GATA4:-0.872191630023;SOX{8,9,10}:-0.879714939402;HIC1:-0.885626358388;TEAD1:-0.895112479255;GTF2A1,2:-0.901895838423;GZF1:-0.912601840659;MZF1:-0.921182233234;TLX1..3_NFIC{dimer}:-0.928608762784;HIF1A:-0.956420840255;RBPJ:-0.978392659974;ADNP_IRX_SIX_ZHX:-0.984617887559;PITX1..3:-0.995887254762;GFI1:-1.05088748461;TEF:-1.07990707506;IKZF1:-1.11239454767;NKX2-1,4:-1.12612238537;PATZ1:-1.14735102096;ZNF423:-1.1729079934;RREB1:-1.17455527995;GTF2I:-1.18260636138;TOPORS:-1.19293812844;REST:-1.20570283964;PPARG:-1.21601039574;KLF4:-1.22627063799;POU6F1:-1.30337124901;PRDM1:-1.3655153905;T:-1.42189206117;bHLH_family:-1.43241432493;ZNF384:-1.54125004232;GCM1,2:-1.55184430285;PAX1,9:-1.64485073464;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:-1.64504483991;FOXL1:-1.77405316785;DBP:-1.78902363047;RXR{A,B,G}:-1.86713315567;FOXD3:-2.00700519208
 |xref=
+|zenbu_report=https://fantom.gsc.riken.jp/zenbu/reports/#miRNA_expression_atlas_human;search_select_hide=table111:FF:11902-125F3;search_select_hide=table117:FF:11902-125F3
 }}

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FF:11902-125F3: Difference between revisions

From FANTOM5_SSTAR

Latest revision as of 18:28, 4 June 2020

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	Mozilla Cavendish skin modified by DaSch for the Web Community Wiki GitHub project page – Report a bug – Skin version: 2.6.0