FF:1517-43C4: Difference between revisions

Latest revision as of 19:08, 4 June 2020

Name:	forelimb, embryo E17
Species:	Mouse (Mus musculus)
Library ID:	CNhs10598
Sample type:	developmental
Genomic View:	UCSC
CAGEd-oPOSSUM:	link
ZENBU report :	link

Additional information

Sample information

strain	C57BL/6J
tissue	forelimb
dev stage	17 days embryo
sex	mixture
age	NA
cell type	CELL MIXTURE - tissue sample
cell line	NA
company	NA
collaboration	FANTOM5 OSC CORE (contact: Al Forrest)
External link for information	[{{{sample_info_link}}} {{{sample_info_link}}}]

RNA information

lot number	NA
catalog number	NA
sample type	NA
extraction protocol (Details)	NA

CAGE Accession numbers

Method		Sample accession id
CAGE		SAMD00005953

Library accession numbers

Library id		Method		Exp. accession id		Run accession id
CNhs10598		CAGE		DRX008968		DRR009842

Accession ID Mm9

Library id		BAM		CTSS
CNhs10598		DRZ001267		DRZ002650

Accession ID Mm10

Library id		BAM		CTSS
CNhs10598		DRZ012617		DRZ014000

Download raw sequence, BAM & CTSS

Mm9

Fasta	BAM	CTSS
download	download	donwload

Mm10

BAM	CTSS
download	donwload

Relative expression to median (log10)

Transcription factors with enriched expression in this sampleRanked list of transcription factor promoter expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.

Co-expression clusters with enriched expression in this sampleRanked list of co-expression cluster expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed. Analyst:NA link to dataset. data

CNhs10598

0	0
1	0
10	0
100	0
1000	0.0943
1001	0.0995
1002	0.0351
1003	0.417
1004	0
1005	0
1006	-0.0559
1007	0.101
1008	0
1009	0.204
101	0.0481
1010	0
1011	0.134
1012	0
1013	-0.0754
1014	0.403
1015	0.0869
1016	0.224
1017	0.13
1018	0.49
1019	0
102	0
1020	0
1021	0
1022	0
1023	0
1024	0.11
1025	0
1026	0
1027	0
1028	0
1029	0.28
103	0.694
1030	0
1031	0.365
1032	0.0199
1033	0.0484
1034	0
1035	0
1036	0.159
1037	0
1038	0.00596
1039	-0.119
104	0
1040	0.229
1041	0

Repeat families with enriched expression in this sampleSummary:Ranked list of repeat family expression in this sample relative tothe median expression in the FANTOM5 collection is shown. Value is log10transformed. Analyst:NA link to dataset. data

TFBS(DNA)motifs over-represented in proximal region of promoters active in this sample

JASPAR motifsSummary:Association of JASPAR motif to the promoter expression in thissample. Pearson's correlation between the number of TFBSs estimated byusing the position-weight matrix for each promoter and its expression isexpressed as Z-score by taking the ones based on random position-weightmatrix, and the tail probability of the normal distribution correspondingto the Z-score is taken as the resulting P-value. Lower P-value indicatesmore (non-random) association of the motif to promoter expression Analyst: Michiel de Hoon link to dataset. data

library id: CNhs10598

Jaspar motif	Logo	P-value
MA0002.2	MA0002.2	0.133
MA0003.1	MA0003.1	0.342
MA0004.1	MA0004.1	0.297
MA0006.1	MA0006.1	0.237
MA0007.1	MA0007.1	0.547
MA0009.1	MA0009.1	0.896
MA0014.1	MA0014.1	0.202
MA0017.1	MA0017.1	1.04364e-13
MA0018.2	MA0018.2	0.0106
MA0019.1	MA0019.1	0.245
MA0024.1	MA0024.1	0.36
MA0025.1	MA0025.1	0.17
MA0027.1	MA0027.1	0.0979
MA0028.1	MA0028.1	2.67237e-5
MA0029.1	MA0029.1	0.824
MA0030.1	MA0030.1	0.27
MA0031.1	MA0031.1	0.0899
MA0035.2	MA0035.2	5.59515e-5
MA0038.1	MA0038.1	0.141
MA0039.2	MA0039.2	0.101
MA0040.1	MA0040.1	0.074
MA0041.1	MA0041.1	0.0527
MA0042.1	MA0042.1	0.233
MA0043.1	MA0043.1	0.797
MA0046.1	MA0046.1	1.14943e-17
MA0047.2	MA0047.2	0.0057
MA0048.1	MA0048.1	0.253
MA0050.1	MA0050.1	1.95109e-5
MA0051.1	MA0051.1	8.54274e-5
MA0052.1	MA0052.1	2.69838e-14
MA0055.1	MA0055.1	0.0149
MA0057.1	MA0057.1	0.662
MA0058.1	MA0058.1	0.138
MA0059.1	MA0059.1	0.0189
MA0060.1	MA0060.1	0.206
MA0061.1	MA0061.1	0.552
MA0062.2	MA0062.2	9.18134e-9
MA0065.2	MA0065.2	3.11823e-4
MA0066.1	MA0066.1	0.504
MA0067.1	MA0067.1	0.202
MA0068.1	MA0068.1	0.271
MA0069.1	MA0069.1	0.707
MA0070.1	MA0070.1	0.983
MA0071.1	MA0071.1	3.59908e-4
MA0072.1	MA0072.1	0.0221
MA0073.1	MA0073.1	0.649
MA0074.1	MA0074.1	0.235
MA0076.1	MA0076.1	3.82286e-5
MA0077.1	MA0077.1	0.946
MA0078.1	MA0078.1	0.231
MA0079.2	MA0079.2	0.0264
MA0080.2	MA0080.2	2.22637e-6
MA0081.1	MA0081.1	0.0714
MA0083.1	MA0083.1	0.0175
MA0084.1	MA0084.1	0.656
MA0087.1	MA0087.1	0.561
MA0088.1	MA0088.1	0.838
MA0090.1	MA0090.1	0.0649
MA0091.1	MA0091.1	0.689
MA0092.1	MA0092.1	0.66
MA0093.1	MA0093.1	0.334
MA0099.2	MA0099.2	0.00355
MA0100.1	MA0100.1	0.0809
MA0101.1	MA0101.1	0.313
MA0102.2	MA0102.2	0.739
MA0103.1	MA0103.1	0.0594
MA0104.2	MA0104.2	0.0743
MA0105.1	MA0105.1	0.637
MA0106.1	MA0106.1	0.335
MA0107.1	MA0107.1	0.437
MA0108.2	MA0108.2	3.45931e-23
MA0111.1	MA0111.1	0.296
MA0112.2	MA0112.2	0.181
MA0113.1	MA0113.1	0.0616
MA0114.1	MA0114.1	3.03472e-11
MA0115.1	MA0115.1	2.62546e-5
MA0116.1	MA0116.1	0.116
MA0117.1	MA0117.1	0.184
MA0119.1	MA0119.1	0.411
MA0122.1	MA0122.1	0.761
MA0124.1	MA0124.1	0.198
MA0125.1	MA0125.1	0.00673
MA0131.1	MA0131.1	0.849
MA0135.1	MA0135.1	0.209
MA0136.1	MA0136.1	9.2969e-8
MA0137.2	MA0137.2	0.125
MA0138.2	MA0138.2	0.137
MA0139.1	MA0139.1	0.0155
MA0140.1	MA0140.1	8.69891e-4
MA0141.1	MA0141.1	2.16858e-9
MA0142.1	MA0142.1	0.15
MA0143.1	MA0143.1	0.4
MA0144.1	MA0144.1	0.295
MA0145.1	MA0145.1	0.0608
MA0146.1	MA0146.1	0.75
MA0147.1	MA0147.1	0.0403
MA0148.1	MA0148.1	0.00228
MA0149.1	MA0149.1	0.0029
MA0150.1	MA0150.1	0.00819
MA0152.1	MA0152.1	0.0169
MA0153.1	MA0153.1	3.33566e-12
MA0154.1	MA0154.1	0.385
MA0155.1	MA0155.1	0.62
MA0156.1	MA0156.1	5.59956e-6
MA0157.1	MA0157.1	0.922
MA0159.1	MA0159.1	7.31249e-4
MA0160.1	MA0160.1	5.00689e-6
MA0162.1	MA0162.1	0.963
MA0163.1	MA0163.1	0.18
MA0164.1	MA0164.1	0.722
MA0258.1	MA0258.1	0.0131
MA0259.1	MA0259.1	0.404

FANTOM5 phase1 novel unique motifsSummary:Association of the 169 novel and unique motifs discovered in FANTOM5 phase1 in this sample. Among the de-novo motifs discovered by DMF, HOMER,ChIPMunk, and ScanAll, only novel motifs are selected after comparison with known motif sets, and their clustering based on MACRO-APE resulted in169 novel and unique motifs. Their association to the promoter expression is evaluated in the same way to the JASPAR motif above Analyst: Michiel de Hoon link to dataset. data

library id: CNhs10598

Novel motif	Logo	P-value
1	1	0.164
10	10	0.226
100	100	0.987
101	101	0.567
102	102	0.652
103	103	0.0875
104	104	0.285
105	105	0.869
106	106	0.99
107	107	0.319
108	108	0.874
109	109	0.379
11	11	0.0714
110	110	0.461
111	111	0.0607
112	112	0.0584
113	113	0.873
114	114	0.0867
115	115	0.649
116	116	0.713
117	117	0.0696
118	118	0.0741
119	119	0.192
12	12	0.524
120	120	0.448
121	121	0.309
122	122	0.469
123	123	0.478
124	124	0.494
125	125	0.082
126	126	0.43
127	127	0.754
128	128	0.716
129	129	0.411
13	13	0.821
130	130	0.426
131	131	0.594
132	132	0.732
133	133	0.438
134	134	0.306
135	135	0.629
136	136	0.564
137	137	0.919
138	138	0.782
139	139	0.155
14	14	0.976
140	140	0.626
141	141	0.585
142	142	0.636
143	143	0.178
144	144	0.141
145	145	0.268
146	146	0.987
147	147	0.198
148	148	0.383
149	149	0.719
15	15	0.00867
150	150	0.852
151	151	0.149
152	152	0.0414
153	153	0.721
154	154	0.575
155	155	0.543
156	156	1.48154e-5
157	157	0.255
158	158	0.328
159	159	1
160	160	0.203
161	161	0.407
162	162	0.964
163	163	0.426
164	164	0.0977
165	165	0.179
166	166	0.118
167	167	0.0904
168	168	0.162
169	169	0.0715
17	17	0.974
18	18	0.15
19	19	0.726
2	2	0.184
20	20	0.14
21	21	0.966
22	22	0.465
23	23	0.489
24	24	0.957
25	25	0.286
26	26	0.236
27	27	0.389
28	28	0.483
29	29	0.042
3	3	0.182
30	30	0.0807
31	31	0.323
32	32	0.625
33	33	0.285
34	34	0.46
35	35	0.00555
36	36	0.0153
37	37	0.737
38	38	0.453
39	39	0.804
4	4	0.893
40	40	0.0471
41	41	0.508
42	42	0.7
43	43	0.313
44	44	0.0797
45	45	0.192
46	46	0.84
47	47	0.304
48	48	0.128
49	49	0.0471
5	5	0.374
50	50	0.284
51	51	0.754
52	52	0.329
53	53	0.553
54	54	0.847
55	55	0.529
56	56	0.803
57	57	0.553
58	58	0.753
59	59	0.7
6	6	0.781
60	60	0.647
61	61	0.78
62	62	0.351
63	63	0.916
64	64	0.19
65	65	0.339
66	66	0.991
67	67	0.682
68	68	0.00461
69	69	0.988
7	7	0.956
70	70	0.146
71	71	0.543
72	72	0.459
73	73	0.819
74	74	0.7
75	75	0.134
76	76	0.0234
77	77	0.79
78	78	0.5
79	79	0.425
8	8	0.04
80	80	0.0485
81	81	0.724
82	82	0.447
83	83	0.384
84	84	0.82
85	85	0.497
86	86	0.529
87	87	0.113
88	88	0.934
89	89	0.7
9	9	0.582
90	90	0.0345
91	91	0.801
92	92	0.553
93	93	0.294
94	94	0.384
95	95	0.245
96	96	0.858
97	97	0.992
98	98	0.272
99	99	0.673

de novo motifs identified by HOMER in promoters active in this sampleSummary:The result of HOMER in this sample is shown. Analyst:NA library id: CNhs10598

FANTOM5 (FF) ontology

Direct parent terms

is_a relathionship
EFO:0002091 biological replicate
FF:0011277 mouse forelimb- embryo E17 sample

Ancestor terms (non development)Summary:Connected ontology terms with is_a, part_of or located_in relationship Analyst: Hideya Kawaji link to source data data

UBERON: Anatomy
0000468 (multi-cellular organism)
0000922 (embryo)
0002102 (forelimb)
0000479 (tissue)
0000026 (appendage)
0000475 (organism subdivision)
0004120 (mesoderm-derived structure)
0000061 (anatomical structure)
0000465 (material anatomical entity)
0001062 (anatomical entity)
0004708 (paired limb/fin)
0002101 (limb)
0004710 (pectoral appendage)
0010317 (germ layer / neural crest derived structure)
0010707 (appendage girdle complex)
0000153 (anterior region of body)
0010708 (pectoral complex)

FF: FANTOM5
0000102 (sample by type)
0000101 (sample by species)
0000103 (mouse sample)
0000001 (sample)
0000999 (fetal tissue sample)
0000292 (embryonic day sample - mouse)
0000004 (tissue sample)
0000300 (mouse embryonic day 17 sample)
0011277 (mouse forelimb- embryo E17 sample)

Ancestor terms (development)Summary:Connected ontology terms with develops_from, derives_from or preceded_by relationship Analyst: Hideya Kawaji link to source data data
UBERON:0002532 (epiblast (generic))
UBERON:0006603 (presumptive mesoderm)
UBERON:0005417 (forelimb bud)
UBERON:0005733 (limb field)
UBERON:0005732 (limb/fin field)
UBERON:0005729 (forelimb/pectoral fin field)
UBERON:0010316 (germ layer / neural crest)
FF:0000294 (mouse embryonic day 11 sample)

@@ Line 1: / Line 1: @@
 {{f5samples
-|ancestors_in_anatomy_facet=UBERON:0000468,UBERON:0000922,UBERON:0002102,UBERON:0000926,UBERON:0000479,UBERON:0000026,UBERON:0000475,UBERON:0004120,UBERON:0000061,UBERON:0000465,UBERON:0000923,UBERON:0002050,UBERON:0005423,UBERON:0001062,UBERON:0005291,UBERON:0003102,UBERON:0004708,UBERON:0002101,UBERON:0004710,UBERON:0001048,UBERON:0006598,UBERON:0004357,UBERON:0009872,UBERON:0004347,UBERON:0005419,UBERON:0005732,UBERON:0002532,UBERON:0000153,UBERON:0003081,UBERON:0006603,UBERON:0005417,UBERON:0005733,UBERON:0005729
+|DRA_sample_Accession=CAGE@SAMD00005953
+|accession_numbers=CAGE;DRX008968;DRR009842;DRZ001267;DRZ002650;DRZ012617;DRZ014000
+|ancestors_in_anatomy_facet=UBERON:0000468,UBERON:0000922,UBERON:0002102,UBERON:0000479,UBERON:0000026,UBERON:0000475,UBERON:0004120,UBERON:0000061,UBERON:0000465,UBERON:0001062,UBERON:0004708,UBERON:0002101,UBERON:0004710,UBERON:0010317,UBERON:0010707,UBERON:0000153,UBERON:0010708
 |ancestors_in_cell_lineage_facet=
 |ancestors_in_disease_facet=
+|ancestors_in_ff_facet=FF:0000102,FF:0000101,FF:0000103,FF:0000001,FF:0000999,FF:0000292,FF:0000004,FF:0000300,FF:0011277
 |comment=
 |created_by=
 |creation_date=
-|datafreeze_phase=1
+|data_phase=2
+|datafreeze_phase=2
 |def=
 |expression_enrichment_score=chr11:121380640..121380655,-!p1@Zfp750!1.83!109.00!Zfp750;;chr4:135129538..135129558,-!p1@Grhl3!1.73!78.36!Grhl3;;chr12:34642510..34642530,+!p1@Twist1!1.71!152.88!Twist1;;chr16:25801993..25802014,+!p1@Trp63!1.62!40.75!Trp63;;chr19:5560600..5560617,-!p1@Ovol1!1.60!47.36!Ovol1;;chr13:40829137..40829205,-!p1@Tfap2a!1.59!42.49!Tfap2a;;chr3:99057269..99057306,+!p1@Tbx15!1.55!41.79!Tbx15;;chr5:77543897..77543911,-!p2@Hopx!1.52!60.25!Hopx;;chr9:31720843..31720888,-!p1@Barx2!1.49!32.74!Barx2;;chr12:37835141..37835194,+!p1@Meox2!1.47!85.32!Meox2;;chr11:121380594..121380609,-!p2@Zfp750!1.47!48.41!Zfp750;;chr11:94981424..94981439,+!p1@Dlx3!1.47!32.39!Dlx3;;chr13:83643159..83643226,+!p3@Mef2c!1.46!27.51!Mef2c;;chr1:165243591..165243625,-!p2@Prrx1!1.45!40.75!Prrx1;;chr12:37835120..37835133,+!p2@Meox2!1.44!37.26!Meox2;;chr6:52190467..52190500,-!p1@Hoxa10!1.44!26.47!Hoxa10;;chr11:121380611..121380625,-!p3@Zfp750!1.38!27.86!Zfp750;;chr7:6649134..6649167,-!p1@Zim1!1.31!101.69!Zim1;;chr12:75002389..75002406,+!p4@Hif1a!1.30!18.81!Hif1a;;chr10:12810631..12810649,+!p1@Plagl1!1.27!449.59!Plagl1;;chr1:136186574..136186592,+!p1@Myog!1.26!17.06!Myog;;chr6:52195795..52195825,-!p1@Hoxa11!1.26!17.06!Hoxa11;;chr2:120365588..120365602,-!p2@Zfp106!1.25!28.21!Zfp106;;chr13:72766250..72766273,+!p1@Irx2!1.24!25.42!Irx2;;chr18:7004715..7004731,-!p1@Mkx!1.21!35.87!Mkx;;chr1:140739014..140739032,-!p1@Lhx9!1.20!18.81!Lhx9;;chr5:120285144..120285160,+!p1@Tbx5!1.20!14.97!Tbx5;;chr15:102751603..102751630,+!p1@Hoxc13!1.18!14.28!Hoxc13;;chr9:87626083..87626108,-!p1@Tbx18!1.17!30.30!Tbx18;;chr10:44178521..44178557,-!p1@Prdm1!1.17!24.38!Prdm1;;chr9:43013917..43013968,-!p1@Pou2f3!1.17!13.93!Pou2f3;;chr6:52184901..52184959,-!p2@Hoxa10!1.16!13.58!Hoxa10;;chr12:74147689..74147711,-!p1@Six1!1.15!28.90!Six1;;chr6:6832076..6832092,-!p1@Dlx5!1.15!15.32!Dlx5;;chr7:53631837..53631850,+!p1@Myod1!1.15!13.23!Myod1;;chr7:17647736..17647772,-!p1@Hif3a!1.14!45.62!Hif3a;;chr12:37835203..37835218,+!p3@Meox2!1.14!15.32!Meox2;;chr11:96880072..96880079,+!p1@Sp6!1.14!12.89!Sp6;;chr1:165243379..165243402,-!p3@Prrx1!1.12!18.11!Prrx1;;chr15:102197405..102197454,-!p1@Sp7!1.12!12.19!Sp7;;chr18:80909801..80909819,-!p1@Nfatc1!1.11!69.65!Nfatc1;;chr15:35225845..35225867,+!p1@Osr2!1.10!29.60!Osr2;;chr15:102087737..102087801,-!p3@Rarg!1.10!19.15!Rarg;;chr1:93698030..93698064,+!p1@Twist2!1.09!22.98!Twist2;;chr13:53568104..53568156,-!p1@Msx2!1.09!16.72!Msx2;;chr17:44951553..44951586,-!p2@Runx2!1.09!12.54!Runx2;;chr2:9800207..9800234,-!p1@Gata3!1.08!33.43!Gata3;;chr6:52176164..52176195,-!p1@Hoxa9!1.08!13.58!Hoxa9;;chr4:55545337..55545357,-!p1@Klf4!1.06!155.67!Klf4;;chr13:72766279..72766296,+!p2@Irx2!1.06!15.67!Irx2;;chr12:37835248..37835260,+!p4@Meox2!1.06!10.45!Meox2;;chr8:59799772..59799789,+!p1@Hand2!1.05!29.95!Hand2;;chr2:172375081..172375105,+!p1@Tfap2c!1.05!10.10!Tfap2c;;chr2:30700881..30700916,+!p1@Prrx2!1.04!18.81!Prrx2;;chr1:93698068..93698085,+!p2@Twist2!1.04!11.84!Twist2;;chr1:165243792..165243808,-!p1@Prrx1!1.03!34.83!Prrx1;;chr10:126778916..126778974,-!p1@Gli1!1.03!21.94!Gli1;;chr8:87297280..87297326,-!p2@Nfix!1.02!22.64!Nfix;;chr1:19199236..19199258,+!p1@Tfap2b!1.02!9.40!Tfap2b;;chr17:44951431..44951445,-!p3@Runx2!1.02!9.40!Runx2;;chr2:103143336..103143367,-!p1@Ehf!1.00!14.63!Ehf;;chr19:5560570..5560582,-!p2@Ovol1!1.00!9.05!Ovol1;;chr14:99697871..99697934,+!p1@Klf5!0.99!175.87!Klf5;;chr12:109242266..109242295,-!p1@Bcl11b!0.99!74.87!Bcl11b;;chr11:101755669..101755686,-!p1@Meox1!0.99!16.02!Meox1;;chr2:160192793..160192809,-!p1@Mafb!0.97!128.51!Mafb;;chr9:69137716..69137744,+!p1@Rora!0.97!53.28!Rora;;chr6:128250380..128250442,-!p2@Tead4!0.97!10.80!Tead4;;chr7:123182248..123182264,-!p3@Sox6!0.97!10.10!Sox6;;chr12:75002335..75002352,+!p7@Hif1a!0.97!8.36!Hif1a;;chr7:19946556..19946611,+!p1@Ppp1r13l!0.94!30.99!Ppp1r13l;;chr2:74513125..74513143,+!p1@Hoxd12!0.94!7.66!Hoxd12;;chr12:75002357..75002378,+!p6@Hif1a!0.94!7.66!Hif1a;;chr4:87452200..87452229,-!p2@Mllt3!0.93!16.37!Mllt3;;chr10:44178493..44178520,-!p3@Prdm1!0.93!10.80!Prdm1;;chr3:5218629..5218684,+!p1@Zfhx4!0.92!24.73!Zfhx4;;chr14:56443806..56443848,+!p1@Nfatc4!0.92!14.97!Nfatc4;;chr8:94881733..94881790,+!p1@Irx5!0.92!14.63!Irx5;;chr13:40826961..40827001,-!p4@Tfap2a!0.92!7.31!Tfap2a;;chr6:52210774..52210787,-!p1@Hoxa13!0.92!7.31!Hoxa13;;chr5:77543935..77543947,-!p4@Hopx!0.92!7.31!Hopx;;chr3:99057256..99057268,+!p3@Tbx15!0.92!7.31!Tbx15;;chr4:135129447..135129467,-!p2@Grhl3!0.91!8.71!Grhl3;;chr6:6831950..6831985,-!p2@Dlx5!0.91!8.01!Dlx5;;chr18:76219118..76219155,+!p1@Zbtb7c!0.90!12.54!Zbtb7c;;chr2:168427252..168427273,-!p2@Nfatc2!0.90!8.71!Nfatc2;;chr1:19199151..19199170,+!p3@Tfap2b!0.90!6.97!Tfap2b;;chr12:37835219..37835230,+!p5@Meox2!0.90!6.97!Meox2;;chr11:21901608..21901634,-!p1@Otx1!0.90!6.97!Otx1;;chr2:74517609..74517621,+!p3@Hoxd11!0.90!6.97!Hoxd11;;chr12:25257141..25257173,+!p1@Grhl1!0.89!14.28!Grhl1;;chr19:59533221..59533271,+!p1@Emx2!0.89!8.36!Emx2;;chr13:83643232..83643254,+!p5@Mef2c!0.88!6.62!Mef2c;;chr12:25257265..25257294,+!p2@Grhl1!0.88!6.62!Grhl1;;chr3:99057677..99057730,+!p2@Tbx15!0.88!6.62!Tbx15;;chr11:78200071..78200100,-!p1@Foxn1!0.88!6.62!Foxn1;;chr10:106923133..106923146,-!p1@Myf5!0.88!6.62!Myf5;;chr7:144506077..144506128,-!p1@Ebf3!0.87!15.32!Ebf3;;chr8:94325814..94325839,-!p2@Irx3!0.87!13.93!Irx3;;chr15:102087880..102087927,-!p2@Rarg!0.86!14.97!Rarg;;chr1:165243653..165243664,-!p4@Prrx1!0.85!8.71!Prrx1;;chr4:87452180..87452196,-!p3@Mllt3!0.84!12.19!Mllt3;;chr19:25746898..25746910,+!p1@Dmrt2!0.84!9.05!Dmrt2;;chr9:71743854..71743909,-!p1@Tcf12!0.82!47.36!Tcf12;;chr15:76287876..76287894,+!p1@Scx!0.82!32.74!Scx;;chr3:66785857..66785873,-!p1@Shox2!0.82!5.57!Shox2;;chr10:106931775..106931798,-!p1@Myf6!0.82!5.57!Myf6;;chr2:91864300..91864379,-!p2@Creb3l1!0.81!16.72!Creb3l1;;chr1:57029281..57029326,-!p1@Satb2!0.81!8.71!Satb2;;chr2:30700857..30700873,+!p3@Prrx2!0.81!7.66!Prrx2;;chr2:30700788..30700824,+!p2@Prrx2!0.80!8.36!Prrx2;;chr2:38206744..38206766,+!p1@Lhx2!0.80!6.62!Lhx2;;chr11:106128936..106128955,-!p4@Smarcd2!0.80!6.27!Smarcd2;;chr18:14131126..14131211,-!p1@Zfp521!0.79!117.71!Zfp521;;chr11:23980664..23980706,+!p2@Bcl11a!0.79!24.38!Bcl11a;;chr17:25707623..25707639,-!p1@Sox8!0.79!24.03!Sox8;;chr4:148178559..148178603,+!p1@Casz1!0.79!16.02!Casz1;;chr5:38215819..38215823,-!p1@Msx1!0.79!14.28!Msx1;;chr6:52195763..52195792,-!p2@Hoxa11!0.79!5.22!Hoxa11;;chr8:94325321..94325366,-!p1@Irx3!0.78!12.89!Irx3;;chr4:134708451..134708469,+!p1@Runx3!0.78!9.40!Runx3;;chr14:67853425..67853454,+!p1@Ebf2!0.78!7.31!Ebf2;;chr14:67853632..67853674,+!p3@Ebf2!0.78!6.27!Ebf2;;chr2:133377954..133377973,+!p1@Bmp2!0.77!17.06!Bmp2;;chr12:34642682..34642753,+!p2@Twist1!0.77!13.93!Twist1;;chr15:50720601..50720630,-!p2@Trps1!0.77!12.54!Trps1;;chr13:72101178..72101203,-!p1@Irx1!0.77!8.01!Irx1;;chr7:144505957..144505972,-!p2@Ebf3!0.77!6.27!Ebf3;;chr12:25257176..25257190,+!p3@Grhl1!0.77!5.57!Grhl1;;chr6:6831986..6832007,-!p4@Dlx5!0.77!4.88!Dlx5;;chr11:69468531..69468557,+!p1@Sox15!0.77!4.88!Sox15;;chr3:5218516..5218544,+!p2@Zfhx4!0.76!7.31!Zfhx4;;chr3:130813736..130813752,+!p3@Lef1!0.76!6.97!Lef1;;chr4:82151274..82151290,-!p3@Nfib!0.75!83.58!Nfib;;chr11:44430989..44431015,+!p4@Ebf1!0.75!8.71!Ebf1;;chr6:30908793..30908815,-!p1@Klf14!0.74!4.53!Klf14;;chr6:6831928..6831949,-!p3@Dlx5!0.74!4.53!Dlx5;;chr1:169528720..169528749,+!p6@Rxrg!0.74!4.53!Rxrg;;chr6:53523358..53523388,+!p1@Creb5!0.73!58.51!Creb5;;chr11:44430812..44430838,+!p1@Ebf1!0.73!47.36!Ebf1;;chr4:13712228..13712267,+!p3@Runx1t1!0.73!8.01!Runx1t1;;chr6:88143711..88143717,+!p2@Gata2!0.73!7.31!Gata2;;chr8:90328310..90328362,-!p3@Zfp423!0.73!5.22!Zfp423;;chr11:44431016..44431045,+!p5@Ebf1!0.72!6.27!Ebf1;;chr7:144505980..144506010,-!p3@Ebf3!0.72!5.22!Ebf3;;chr1:165243638..165243649,-!p5@Prrx1!0.72!5.22!Prrx1;;chr12:9581262..9581282,+!p1@Osr1!0.71!55.72!Osr1;;chr16:14705925..14705951,+!p1@Snai2!0.71!32.74!Snai2;;chr11:44431687..44431706,+!p2@Ebf1!0.71!21.59!Ebf1;;chr13:15555670..15555771,+!p2@Gli3!0.71!11.49!Gli3;;chr1:120950098..120950132,-!p2@Gli2!0.71!10.10!Gli2;;chr18:14131045..14131062,-!p3@Zfp521!0.71!6.97!Zfp521;;chr12:25257114..25257131,+!p4@Grhl1!0.71!5.57!Grhl1;;chr12:57796615..57796687,+!p1@Pax9!0.71!4.18!Pax9;;chr17:86087592..86087615,-!p1@Six2!0.71!4.18!Six2;;chr1:19199095..19199114,+!p5@Tfap2b!0.71!4.18!Tfap2b;;chr1:19199079..19199092,+!p7@Tfap2b!0.71!4.18!Tfap2b;;chr1:122498955..122498968,+!p1@En1!0.71!4.18!En1;;chr3:99044284..99044308,+!p4@Tbx15!0.71!4.18!Tbx15;;chr5:120285161..120285176,+!p2@Tbx5!0.71!4.18!Tbx5;;chr7:119885539..119885574,+!p3@Tead1!0.71!4.18!Tead1;;chr3:130813200..130813252,+!p1@Lef1!0.69!19.85!Lef1;;chr6:14851440..14851497,+!p2@Foxp2!0.69!10.45!Foxp2;;chr4:84320893..84320910,-!p1@Bnc2!0.69!9.40!Bnc2;;chr2:65683890..65683907,+!p1@Csrnp3!0.69!8.01!Csrnp3;;chr8:111227493..111227517,+!p@chr8:111227493..111227517,+!0.69!7.31!Zfhx3;;chr3:5218546..5218561,+!p4@Zfhx4!0.69!6.27!Zfhx4;;chr2:74520048..74520064,+!p1@Hoxd11!0.68!3.83!Hoxd11;;chr2:74520343..74520383,+!p4@Hoxd11!0.68!3.83!Hoxd11;;chr2:74529970..74529997,+!p1@Hoxd10!0.68!3.83!Hoxd10;;chr3:66785181..66785199,-!p2@Shox2!0.68!3.83!Shox2;;chr1:19199021..19199048,+!p8@Tfap2b!0.68!3.83!Tfap2b;;chr13:73397958..73397994,+!p1@Irx4!0.68!3.83!Irx4;;chr12:120085700..120085711,+!p1@Sp8!0.68!3.83!Sp8;;chr8:87324243..87324277,-!p1@Nfix!0.67!101.69!Nfix;;chr2:167363692..167363710,+!p1@Snai1!0.67!52.24!Snai1;;chr8:111227518..111227550,+!p@chr8:111227518..111227550,+!0.67!6.97!Zfhx3;;chr13:72101161..72101177,-!p2@Irx1!0.66!5.22!Irx1;;chr4:124334894..124334899,+!p1@Pou3f1!0.66!4.88!Pou3f1;;chr2:91864661..91864686,-!p1@Creb3l1!0.65!87.41!Creb3l1;;chrX:45245644..45245666,-!p2@Smarca1!0.65!12.54!Smarca1;;chr16:18587076..18587106,-!p1@Tbx1!0.65!5.22!Tbx1;;chr11:23977742..23977794,+!p6@Bcl11a!0.65!4.53!Bcl11a;;chr6:144157924..144157955,-!p2@Sox5!0.65!4.53!Sox5;;chr5:120285130..120285141,+!p3@Tbx5!0.65!3.48!Tbx5;;chr6:70906450..70906454,+!p1@Foxi3!0.65!3.48!Foxi3;;chr3:66785201..66785226,-!p3@Shox2!0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Grhl2!0.54!2.44!Grhl2;;chr6:144152648..144152680,-!p5@Sox5!0.54!2.44!Sox5;;chr6:72185396..72185413,-!p6@Atoh8!0.54!2.44!Atoh8;;chr18:14130594..14130600,-!p7@Zfp521!0.54!2.44!Zfp521;;chr9:31720903..31720918,-!p2@Barx2!0.54!2.44!Barx2;;chr15:50721588..50721610,-!p1@Trps1!0.53!30.65!Trps1;;chr14:64562503..64562524,+!p1@Sox7!0.53!17.76!Sox7;;chrX:45245679..45245702,-!p1@Smarca1!0.53!13.23!Smarca1;;chr11:5761871..5761882,+!p3@Aebp1!0.53!7.31!Aebp1;;chr2:38206580..38206600,+!p2@Lhx2!0.53!3.13!Lhx2;;chr2:77654936..77654988,-!p4@Zfp385b!0.53!3.13!Zfp385b;;chr2:77654815..77654872,-!p2@Zfp385b!0.53!3.13!Zfp385b;;chr17:28487692..28487765,-!p1@Tead3!0.52!59.55!Tead3;;chr15:81977802..81977828,+!p2@Srebf2!0.52!25.07!Srebf2;;chr2:56976543..56976558,-!p2@Nr4a2!0.52!6.27!Nr4a2;;chr15:50721560..50721572,-!p10@Trps1!0.52!4.53!Trps1;;chr15:103085660..103085681,-!p1@Nfe2!0.52!3.83!Nfe2;;chr11:5761889..5761969,+!p1@Aebp1!0.51!124.33!Aebp1;;chr10:80889867..80889924,-!p1@Nfic!0.51!81.49!Nfic;;chr6:72739185..72739232,-!p1@Tcf7l1!0.51!29.60!Tcf7l1;;chr12:9581317..9581333,+!p3@Osr1!0.51!3.83!Osr1;;chr18:14131020..14131033,-!p4@Zfp521!0.51!3.13!Zfp521;;chr4:82151126..82151133,-!p8@Nfib!0.51!3.13!Nfib;;chr10:67599319..67599360,-!p2@Arid5b!0.50!30.99!Arid5b;;chr19:7342725..7342784,+!p1@Rcor2!0.50!11.14!Rcor2;;chr2:27532479..27532509,+!p3@Rxra!0.50!5.22!Rxra;;chr11:5761979..5761992,+!p2@Aebp1!0.50!5.22!Aebp1;;chr10:44178474..44178487,-!p4@Prdm1!0.50!3.48!Prdm1;;chr19:7342786..7342803,+!p2@Rcor2!0.50!3.13!Rcor2;;chr15:36937137..36937157,-!p2@Gm10193,p2@Zfp706!0.49!86.37!Zfp706;;chr2:130120884..130120972,+!p1@Ebf4!0.49!16.02!Ebf4;;chrX:98449898..98449913,+!p2@Foxo4!0.49!8.36!Foxo4;;chr7:19679964..19679982,+!p1@Six5!0.49!7.31!Six5;;chr6:51382677..51382783,+!p1@Nfe2l3!0.49!6.62!Nfe2l3;;chr11:23978111..23978134,+!p3@Bcl11a!0.49!5.22!Bcl11a;;chr1:193961837..193961849,-!p3@Rcor3!0.49!4.88!Rcor3;;chr3:5218563..5218587,+!p5@Zfhx4!0.49!3.83!Zfhx4;;chr1:120950197..120950215,-!p5@Gli2!0.49!3.13!Gli2;;chr10:119914001..119914078,-!p4@Hmga2!0.49!3.13!Hmga2;;chr17:51971932..51971958,-!p2@Satb1!0.49!3.13!Satb1;;chr13:40826150..40826167,-!p3@Tfap2a!0.49!2.44!Tfap2a;;chr12:75002306..75002311,+!p10@Hif1a!0.49!2.09!Hif1a;;chr2:73110004..73110016,+!p2@Sp9!0.49!2.09!Sp9;;chr2:74506264..74506286,+!p1@Hoxd13!0.49!2.09!Hoxd13;;chr2:74520075..74520087,+!p6@Hoxd11!0.49!2.09!Hoxd11;;chr7:123182318..123182332,-!p11@Sox6!0.49!2.09!Sox6;;chr6:64679112..64679126,+!p1@Atoh1!0.49!2.09!Atoh1;;chr6:144157968..144157989,-!p7@Sox5!0.49!2.09!Sox5;;chr6:52190668..52190682,-!p3@Hoxa10!0.49!2.09!Hoxa10;;chr9:87625971..87625992,-!p2@Tbx18!0.49!2.09!Tbx18;;chr7:56892217..56892221,-!p1@Dbx1!0.49!2.09!Dbx1;;chr8:87297330..87297365,-!p5@Nfix!0.49!2.09!Nfix;;chrX:55284180..55284195,+!p2@Zic3!0.49!2.09!Zic3;;chr18:52775562..52775650,+!p1@Zfp474!0.49!2.09!Zfp474;;chr15:95485240..95485257,-!p1@Dbx2!0.49!2.09!Dbx2;;chr1:57028606..57028625,-!p4@Satb2!0.49!2.09!Satb2;;chr1:57028556..57028583,-!p5@Satb2!0.49!2.09!Satb2;;chr2:103264245..103264268,+!p2@Elf5!0.49!2.09!Elf5;;chr1:19199193..19199207,+!p11@Tfap2b!0.49!2.09!Tfap2b;;chr10:92773591..92773623,-!p1@Elk3!0.48!61.29!Elk3;;chr4:135840573..135840601,+!p1@Zfp46!0.48!21.24!Zfp46;;chr6:38204087..38204108,-!p2@D630045J12Rik!0.48!7.31!D630045J12Rik;;chr15:50721616..50721632,-!p4@Trps1!0.48!6.62!Trps1;;chr3:30408674..30408716,-!p2@Mecom!0.48!3.83!Mecom;;chr2:77654650..77654685,-!p3@Zfp385b!0.48!2.79!Zfp385b;;chr11:44430877..44430899,+!p6@Ebf1!0.48!2.79!Ebf1;;chrX:45807329..45807370,-!p1@Elf4!0.47!18.46!Elf4;;chr18:69504157..69504184,+!p3@Tcf4!0.47!16.37!Tcf4;;chr14:65977324..65977372,+!p2@Zfp395!0.47!14.63!Zfp395;;chr10:80600749..80600766,+!p2@Zbtb7a!0.47!13.58!Zbtb7a;;chr6:65728988..65729056,+!p1@Prdm5!0.47!12.54!Prdm5;;chr14:100683672..100683717,-!p1@Klf12!0.47!11.84!Klf12;;chr18:65741358..65741415,+!p1@Zfp532!0.47!11.14!Zfp532;;chr13:37918773..37918818,+!p3@Rreb1!0.47!10.80!Rreb1;;chr10:119913546..119913583,-!p3@Hmga2!0.47!4.88!Hmga2;;chr12:9581284..9581303,+!p2@Osr1!0.47!4.53!Osr1;;chr15:50721942..50721987,-!p13@Trps1!0.47!2.44!Trps1;;chr1:179374784..179374800,+!p2@Zfp238!0.47!2.44!Zfp238;;chr5:65194752..65194769,+!p1@Klf3!0.46!88.46!Klf3;;chr12:36219645..36219730,-!p1@Ahr!0.46!25.42!Ahr;;chr4:97444012..97444045,+!p4@Nfia!0.46!19.15!Nfia;;chr6:131338363..131338383,-!p4@Csda!0.46!11.14!Csda;;chr18:69505414..69505465,+!p6@Tcf4!0.46!9.05!Tcf4;;chr11:96690779..96690790,-!p3@Nfe2l1!0.46!5.57!Nfe2l1;;chr4:97444280..97444291,+!p10@Nfia!0.46!5.57!Nfia;;chr4:148178529..148178548,+!p3@Casz1!0.46!5.57!Casz1;;chr15:50721544..50721558,-!p5@Trps1!0.46!5.22!Trps1;;chr4:135728181..135728203,+!p2@E2f2!0.46!2.79!E2f2;;chr8:90483433..90483457,-!p2@Zfp423!0.46!2.79!Zfp423;;chr4:82151653..82151706,-!p2@Nfib!0.45!71.74!Nfib;;chr13:83663902..83663927,+!p1@Mef2c!0.45!61.99!Mef2c;;chr16:4594740..4594759,+!p1@Glis2!0.45!28.90!Glis2;;chr5:32438831..32438878,+!p1@Fosl2!0.45!26.12!Fosl2;;chr6:131338400..131338415,-!p3@Csda!0.45!25.77!Csda;;chr13:15555035..15555073,+!p4@Gli3!0.45!6.27!Gli3;;chr6:72739034..72739055,-!p3@Tcf7l1!0.45!4.88!Tcf7l1;;chr4:58956447..58956510,+!p1@Zkscan16!0.45!4.88!Zkscan16;;chr5:120120667..120120685,+!p3@Tbx3!0.45!4.18!Tbx3;;chr1:120879128..120879183,-!p3@Gli2!0.45!4.18!Gli2;;chr4:122673187..122673201,+!p2@Mycl1!0.45!3.83!Mycl1;;chr2:74542918..74542971,+!p1@Hoxd8!0.45!3.13!Hoxd8;;chr15:50721503..50721514,-!p15@Trps1!0.45!2.44!Trps1;;chr10:44178575..44178590,-!p5@Prdm1!0.45!2.44!Prdm1;;chr7:25372631..25372684,-!p1@Zfp575!0.44!6.97!Zfp575;;chr10:80812991..80813004,-!p3@Hmg20b!0.44!4.53!Hmg20b;;chr11:121381087..121381108,-!p4@Zfp750!0.44!1.74!Zfp750;;chr11:106128919..106128933,-!p8@Smarcd2!0.44!1.74!Smarcd2;;chr11:50641158..50641165,-!p3@Zfp354c!0.44!1.74!Zfp354c;;chr11:21901587..21901604,-!p2@Otx1!0.44!1.74!Otx1;;chr7:53631818..53631829,+!p2@Myod1!0.44!1.74!Myod1;;chr8:94881686..94881700,+!p4@Irx5!0.44!1.74!Irx5;;chr9:87626109..87626120,-!p3@Tbx18!0.44!1.74!Tbx18;;chr2:74543103..74543135,+!p4@Hoxd8!0.44!1.74!Hoxd8;;chr2:74517725..74517738,+!p5@Hoxd11!0.44!1.74!Hoxd11;;chr3:99044251..99044260,+!p8@Tbx15!0.44!1.74!Tbx15;;chr4:148178459..148178482,+!p4@Casz1!0.44!1.74!Casz1;;chr4:114581497..114581519,-!p2@Foxd2!0.44!1.74!Foxd2;;chr4:126413480..126413489,-!p1@Tfap2e!0.44!1.74!Tfap2e;;chr2:74543202..74543213,+!p3@Hoxd8!0.44!1.74!Hoxd8;;chr2:74543397..74543435,+!p2@Hoxd8!0.44!1.74!Hoxd8;;chr1:169548377..169548430,+!p1@Rxrg!0.44!1.74!Rxrg;;chr19:59533139..59533152,+!p2@Emx2!0.44!1.74!Emx2;;chr19:59534008..59534046,+!p7@Emx2!0.44!1.74!Emx2;;chr18:69752864..69752875,+!p25@Tcf4!0.44!1.74!Tcf4;;chr17:44873599..44873623,-!p7@Runx2!0.44!1.74!Runx2;;chr13:40829337..40829360,-!p5@Tfap2a!0.44!1.74!Tfap2a;;chr15:102828642..102828653,+!p2@Hoxc6!0.44!1.74!Hoxc6;;chr13:83643136..83643158,+!p7@Mef2c!0.44!1.74!Mef2c;;chr15:50714356..50714368,-!p14@Trps1!0.44!1.74!Trps1;;chr15:102767273..102767285,+!p2@Hoxc12!0.44!1.74!Hoxc12;;chr13:72766234..72766243,+!p3@Irx2!0.44!1.74!Irx2;;chr6:51382822..51382833,+!p2@Nfe2l3!0.44!1.74!Nfe2l3;;chr5:42155788..42155800,-!p1@Nkx3-2!0.44!1.74!Nkx3-2;;chr6:52184880..52184893,-!p6@Hoxa10!0.44!1.74!Hoxa10;;chr6:52176144..52176161,-!p2@Hoxa9!0.44!1.74!Hoxa9;;chr5:120285104..120285113,+!p5@Tbx5!0.44!1.74!Tbx5;;chrX:55283799..55283813,+!p1@Zic3!0.44!1.74!Zic3;;chr7:52071956..52071978,-!p1@Atf5!0.43!79.40!Atf5;;chr6:98978245..98978289,-!p1@Foxp1!0.43!35.87!Foxp1;;chr18:69505797..69505852,+!p2@Tcf4!0.43!28.21!Tcf4;;chr12:86940338..86940357,+!p1@Jdp2!0.43!23.68!Jdp2;;chr9:106356243..106356264,+!p2@Pcbp4!0.43!10.10!Pcbp4;;chr11:98789099..98789124,+!p3@Rara!0.43!6.97!Rara;;chr4:82151148..82151159,-!p5@Nfib!0.43!6.27!Nfib;;chrX:131543765..131543775,-!p2@Zmat1!0.43!4.53!Zmat1;;chr18:79306029..79306059,-!p2@Setbp1!0.43!4.53!Setbp1;;chr13:37917716..37917742,+!p9@Rreb1!0.43!3.48!Rreb1;;chr6:83391584..83391595,-!p2@Tet3!0.43!3.48!Tet3;;chr8:87237732..87237745,-!p7@Nfix!0.43!3.13!Nfix;;chr18:69680960..69681007,+!p10@Tcf4!0.43!2.44!Tcf4;;chr2:27532513..27532525,+!p8@Rxra!0.43!2.09!Rxra;;chr1:136456791..136456810,+!p1@Kdm5b!0.42!86.02!Kdm5b;;chr7:52471143..52471186,+!p1@Tead2!0.42!25.07!Tead2;;chr11:62602904..62602945,-!p1@Zfp286!0.42!10.45!Zfp286;;chrX:53599567..53599592,+!p1@Zfp449!0.42!9.40!Zfp449;;chr13:31898729..31898761,+!p1@Foxc1!0.42!5.22!Foxc1;;chr10:67000609..67000625,+!p1@Egr2!0.42!4.88!Egr2;;chr4:63071779..63071791,-!p3@Akna!0.42!2.79!Akna;;chr15:50720589..50720600,-!p12@Trps1!0.42!2.44!Trps1;;chr17:51971960..51971979,-!p1@Satb1!0.42!2.44!Satb1;;chr15:37162834..37162849,+!p2@Grhl2!0.42!2.09!Grhl2;;chr11:23978353..23978379,+!p10@Bcl11a!0.42!2.09!Bcl11a;;chr4:154597177..154597195,-!p1@Ski!0.41!89.15!Ski;;chr14:22807083..22807104,-!p1@Zfp503!0.41!40.40!Zfp503;;chr4:97444297..97444323,+!p2@Nfia!0.41!35.52!Nfia;;chr12:39506873..39506913,+!p1@Etv1!0.41!23.68!Etv1;;chr11:90252223..90252240,-!p1@Hlf!0.41!18.81!Hlf;;chr5:125538737..125538781,-!p2@Ncor2!0.41!7.66!Ncor2;;chr4:124805061..124805087,-!p1@Zc3h12a!0.41!6.62!Zc3h12a;;chr4:54957910..54957954,+!p2@Zfp462!0.41!6.27!Zfp462;;chr18:79306577..79306592,-!p3@Setbp1!0.41!3.83!Setbp1;;chrX:70587989..70588000,+!p3@Zfp275!0.41!3.83!Zfp275;;chr8:87324203..87324206,-!p10@Nfix!0.41!2.44!Nfix;;chr3:130815703..130815721,+!p2@Lef1!0.41!2.09!Lef1;;chr6:14851344..14851364,+!p6@Foxp2!0.41!2.09!Foxp2;;chr12:109241728..109241781,-!p2@Bcl11b!0.41!1.74!Bcl11b;;chr8:74842952..74842970,+!p1@Klf2!0.40!153.93!Klf2;;chr7:30880169..30880211,+!p1@Zfp260!0.40!72.78!Zfp260;;chr1:38684260..38684312,-!p2@Aff3!0.40!15.32!Aff3;;chr4:82151622..82151643,-!p4@Nfib!0.40!8.71!Nfib;;chr14:65977427..65977452,+!p4@Zfp395!0.40!4.88!Zfp395;;chr8:87324292..87324303,-!p4@Nfix!0.40!4.53!Nfix;;chr13:31717548..31717596,+!p1@Foxf2!0.40!3.83!Foxf2;;chr18:69681483..69681514,+!p11@Tcf4!0.40!3.13!Tcf4;;chr2:74549968..74549996,+!p1@Hoxd3!0.40!2.09!Hoxd3;;chr10:126779021..126779032,-!p2@Gli1!0.40!2.09!Gli1;;chrX:48559194..48559210,-!p4@Mbnl3!0.40!2.09!Mbnl3;;chr18:5591866..5591900,+!p1@Zeb1!0.39!53.98!Zeb1;;chr10:119913310..119913366,-!p1@Hmga2!0.39!17.06!H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;chr6:144152701..144152714,-!p24@Sox5!0.23!0.70!Sox5;;chr7:144506051..144506062,-!p5@Ebf3!0.23!0.70!Ebf3;;chr6:6812988..6813002,+!p3@Dlx6!0.23!0.70!Dlx6;;chr6:144158183..144158210,-!p11@Sox5!0.23!0.70!Sox5;;chr5:125523164..125523188,-!p8@Ncor2!0.23!0.70!Ncor2;;chr6:144157960..144157967,-!p20@Sox5!0.23!0.70!Sox5;;chr6:144157869..144157876,-!p26@Sox5!0.23!0.70!Sox5;;chr6:98978428..98978450,-!p15@Foxp1!0.23!0.70!Foxp1;;chr6:97941770..97941784,+!p4@Mitf!0.23!0.70!Mitf;;chr6:88143570..88143590,+!p4@Gata2!0.23!0.70!Gata2;;chr5:137041573..137041594,-!p9@Cux1!0.23!0.70!Cux1;;chr6:6813769..6813781,+!p8@Dlx6!0.23!0.70!Dlx6;;chr6:140571128..140571148,+!p10@Aebp2!0.23!0.70!Aebp2;;chr2:168781014..168781025,-!p4@LOC100502777,p4@Zfp64!0.23!0.70!Zfp64;;chr2:33496386..33496410,-!p1@Lmx1b!0.23!0.70!Lmx1b;;chr2:147871627..147871641,-!p1@Foxa2!0.23!0.70!Foxa2;;chr2:115890864..115890869,-!p14@Meis2!0.23!0.70!Meis2;;chr2:168427068..168427115,-!p3@Nfatc2!0.23!0.70!Nfatc2;;chr1:122499088..122499099,+!p2@En1!0.23!0.70!En1;;chr2:103264213..103264233,+!p1@Elf5!0.23!0.70!Elf5;;chr2:103252231..103252256,+!p4@Elf5!0.23!0.70!Elf5;;chr19:59533595..59533628,+!p6@Emx2!0.23!0.70!Emx2;;chr1:52065530..52065548,+!p3@Stat4!0.23!0.70!Stat4;;chr1:165243978..165243992,-!p9@Prrx1!0.23!0.70!Prrx1;;chr1:194979383..194979393,+!p3@Irf6!0.23!0.70!Irf6;;chr1:78193687..78193692,-!p1@Pax3!0.23!0.70!Pax3;;chr19:59533429..59533470,+!p4@Emx2!0.23!0.70!Emx2;;chr19:59533206..59533217,+!p9@Emx2!0.23!0.70!Emx2;;chr19:59533163..59533185,+!p3@Emx2!0.23!0.70!Emx2;;chr2:30701003..30701028,+!p6@Prrx2!0.23!0.70!Prrx2;;chr2:147190749..147190769,+!p1@Pax1!0.23!0.70!Pax1;;chr1:165244244..165244254,-!p8@Prrx1!0.23!0.70!Prrx1;;chr17:51971991..51972003,-!p4@Satb1!0.23!0.70!Satb1;;chr19:5447692..5447711,+!p2@Fosl1!0.23!0.70!Fosl1;;chr19:46222739..46222745,-!p2@Pitx3!0.23!0.70!Pitx3;;chr18:76400957..76400968,+!p12@Smad2!0.23!0.70!Smad2;;chr17:44872524..44872537,-!p9@Runx2!0.23!0.70!Runx2;;chr18:69681413..69681424,+!p24@Tcf4!0.23!0.70!Tcf4;;chr16:55838743..55838754,-!p6@Nfkbiz!0.23!0.70!Nfkbiz;;chr16:95808192..95808202,-!p2@Erg!0.23!0.70!Erg;;chr16:18587052..18587063,-!p3@Tbx1!0.23!0.70!Tbx1;;chr16:43364012..43364030,+!p22@Zbtb20!0.23!0.70!Zbtb20;;chr17:44951598..44951609,-!p12@Runx2!0.23!0.70!Runx2;;chr2:74549945..74549965,+!p4@Hoxd3!0.23!0.70!Hoxd3;;chr3:128902837..128902861,+!p3@Pitx2!0.23!0.70!Pitx2;;chr3:32264814..32264835,-!p5@Zmat3!0.23!0.70!Zmat3;;chr2:77654737..77654748,-!p17@Zfp385b!0.23!0.70!Zfp385b;;chr3:130813268..130813275,+!p12@Lef1!0.23!0.70!Lef1;;chr3:153993507..153993540,-!p1@Lhx8!0.23!0.70!Lhx8;;chr2:74513064..74513089,+!p2@Hoxd12!0.23!0.70!Hoxd12;;chr4:135728311..135728342,+!p3@E2f2!0.23!0.70!E2f2;;chr2:71384458..71384526,-!p2@Dlx2!0.23!0.70!Dlx2;;chr3:89191004..89191022,-!p4@Zbtb7b!0.23!0.70!Zbtb7b;;chr2:81893535..81893548,+!p1@Zfp804a!0.23!0.70!Zfp804a;;chr7:89137468..89137479,-!p3@Bnc1!0.23!0.70!Bnc1;;chr9:87625998..87626007,-!p4@Tbx18!0.23!0.70!Tbx18;;chr9:31721051..31721068,-!p3@Barx2!0.23!0.70!Barx2;;chr9:71959508..71959519,-!p15@Tcf12!0.23!0.70!Tcf12;;chr9:91260616..91260653,-!p2@Zic1!0.23!0.70!Zic1;;chr11:69468501..69468515,+!p2@Sox15!0.23!0.70!Sox15;;chr11:100721732..100721742,+!p3@Stat5a!0.23!0.70!Stat5a;;chr10:106931839..106931851,-!p3@Myf6!0.23!0.70!Myf6;;chr11:96145362..96145389,+!p4@Hoxb7!0.23!0.70!Hoxb7;;chr10:12844757..12844771,+!p2@Plagl1!0.23!0.70!Plagl1;;chr10:50614546..50614568,+!p@chr10:50614546..50614568,+!0.23!0.70!Sim1;;
+|ffid_belonging_in_development=UBERON:0002532,UBERON:0006603,UBERON:0005417,UBERON:0005733,UBERON:0005732,UBERON:0005729,UBERON:0010316,FF:0000294
 |fonse_cell_line=
 |fonse_cell_line_closure=
@@ Line 39: / Line 44: @@
 |is_a=EFO:0002091;;FF:0011277
 |is_obsolete=
+|library_id=CNhs10598
+|library_id_phase_based=2:CNhs10598
+|microRNAs=
+|microRNAs_nn=
+|microRNAs_nonnovel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer/#/mouse#cage;sample;1517
+|microRNAs_novel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer_novel/#/mouse#cage;sample;1517
+|mm10bam=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/mm10_v2/basic/mouse.tissue.hCAGE/forelimb%252c%2520embryo%2520E17.CNhs10598.1517-43C4.mm10.nobarcode.bam
+|mm10ctss=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/mm10_v2/basic/mouse.tissue.hCAGE/forelimb%252c%2520embryo%2520E17.CNhs10598.1517-43C4.mm10.nobarcode.ctss.bed.gz
+|mm9bam=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/mouse.tissue.hCAGE/forelimb%252c%2520embryo%2520E17.CNhs10598.1517-43C4.mm9.nobarcode.bam
+|mm9ctss=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/mouse.tissue.hCAGE/forelimb%252c%2520embryo%2520E17.CNhs10598.1517-43C4.mm9.ctss.bed.gz
+|mm9fasta=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/mouse.tissue.hCAGE/forelimb%252c%2520embryo%2520E17.CNhs10598.1517-43C4.mm9.nobarcode.rdna.fa.gz
 |name=forelimb, embryo E17
 |namespace=FANTOM5
@@ Line 44: / Line 60: @@
 |profile_cagescan=,,,
 |profile_hcage=CNhs10598,LSID654,release008,COMPLETED
-|profile_rnaseq=,,,
+|profile_rnaseq=
 |profile_srnaseq=,,,
+|repeat_enrich_byfamily=0.102410765744197,0,0,0,0,0,0.57959894507263,0,0.0317787205630553,0,0,1.0582169703397,0,0,0,0,0,0,0.0376616223321844,0,0,0,0,0,0,0,0,0,0,0,0,0,0.259277053141708,0,0,0,0,0.0116691706336625,-0.0198505898063925,0.0422850803458108,0.106853281013651,1.0287855682329,-0.0403136647955923,0,0,0,0,0,0,0,0,0,0,0,0,-0.0660055475634404,0.229554973214759,0,0,0,-0.0428469550828748,0,0.0184261748775667,0.12977112683364,0,0,0.092997609184363,-9.06000387335126e-06,-0.0283199159374421,-0.0104729137603258,0,0,0.0450104745729317,0,0,0,0.0306405347630566,-0.119080892171233,-0.216970609361702,-0.0788315948399074,0,0,0,0,0,0,-0.197902075949934,-0.276363156415871,-0.269803002231399,0,0,0,0,0
 |rna_box=43
 |rna_catalog_number=
@@ Line 59: / Line 76: @@
 |rna_weight_ug=
 |sample_age=
+|sample_category=developmental
 |sample_cell_catalog=
 |sample_cell_line=
@@ Line 79: / Line 97: @@
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 |xref=
+|zenbu_report=https://fantom.gsc.riken.jp/zenbu/reports/#miRNA_expression_atlas_mouse;search_select_hide=table111:1517-43C4;search_select_hide=table117:1517-43C4
 }}

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FF:1517-43C4: Difference between revisions

From FANTOM5_SSTAR

Latest revision as of 19:08, 4 June 2020

CNhs10598

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	Mozilla Cavendish skin modified by DaSch for the Web Community Wiki GitHub project page – Report a bug – Skin version: 2.6.0