FFCP PHASE1:Hg19::chr9:116225978..116225998,+: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=5998 | |EntrezGene=5998 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=9999 | |HGNC=9999 | ||
|TSSclassifier=strong | |||
|UniProt=B3KWG8,P49796,Q9NX91 | |UniProt=B3KWG8,P49796,Q9NX91 | ||
|association_with_transcript=-10bp_to_ENST00000478599,NM_017790,uc004bhr.2,uc004bhs.2_5end | |association_with_transcript=-10bp_to_ENST00000478599,NM_017790,uc004bhr.2,uc004bhs.2_5end | ||
|cluster_id=chr9:116225978..116225998,+ | |||
|coexpression_cluster_id=C4792 | |coexpression_cluster_id=C4792 | ||
|description=CAGE_peak_12_at_RGS3_5end | |description=CAGE_peak_12_at_RGS3_5end | ||
|id=chr9:116225978..116225998,+ | |id=chr9:116225978..116225998,+ | ||
|ontology_enrichment_celltype=CL:0000066!6.59e-23!254;CL:1000497!6.61e-09!18;CL:0002518!6.61e-09!18;CL:1000507!3.03e-08!12;CL:1000494!3.03e-08!12;CL:1000449!1.36e-07!16 | |ontology_enrichment_celltype=CL:0000066!6.59e-23!254;CL:1000497!6.61e-09!18;CL:0002518!6.61e-09!18;CL:1000507!3.03e-08!12;CL:1000494!3.03e-08!12;CL:1000449!1.36e-07!16 | ||
|ontology_enrichment_celltype_v019=CL:1000507;2.43e-16;10!CL:1000494;2.43e-16;10!CL:1000497;1.21e-14;17!CL:0002518;1.21e-14;17!CL:1000449;3.10e-12;15!CL:0002681;3.60e-08;12!CL:0002584;3.60e-08;12 | |||
|ontology_enrichment_celltype_v019_2=CL:0000066,7.15e-22,253;CL:1000507,2.19e-16,10;CL:1000494,2.19e-16,10;CL:1000497,1.13e-14,17;CL:0002518,1.13e-14,17;CL:1000449,3.34e-12,15;CL:0002681,4.27e-08,12;CL:0002584,4.27e-08,12 | |||
|ontology_enrichment_development_v019=UBERON:0001041;8.00e-08;30 | |||
|ontology_enrichment_disease=DOID:305!4.43e-33!106;DOID:0050687!1.05e-29!143;DOID:162!2.50e-16!235;DOID:14566!3.22e-15!239;DOID:299!8.47e-12!25;DOID:1325!3.49e-07!7;DOID:3904!3.49e-07!7;DOID:3119!6.20e-07!14 | |ontology_enrichment_disease=DOID:305!4.43e-33!106;DOID:0050687!1.05e-29!143;DOID:162!2.50e-16!235;DOID:14566!3.22e-15!239;DOID:299!8.47e-12!25;DOID:1325!3.49e-07!7;DOID:3904!3.49e-07!7;DOID:3119!6.20e-07!14 | ||
|ontology_enrichment_disease_v019=DOID:305;7.67e-13;106!DOID:1325;6.06e-12;7!DOID:3904;6.06e-12;7!DOID:299;9.89e-12;25!DOID:0050687;1.48e-08;143!DOID:5409;1.79e-07;4!DOID:0050615;4.65e-07;16 | |||
|ontology_enrichment_disease_v019_2=DOID:305,1.58e-31,106;DOID:0050687,1.06e-30,143;DOID:162,1.58e-16,235;DOID:14566,8.69e-16,239;DOID:1325,3.48e-12,7;DOID:3904,3.48e-12,7;DOID:299,9.36e-12,25;DOID:5409,1.64e-07,4;DOID:0050615,3.95e-07,16;DOID:7,5.72e-07,39;DOID:3905,8.69e-07,9 | |||
|ontology_enrichment_uberon=UBERON:0001007!4.39e-14!155;UBERON:0001555!4.39e-14!155;UBERON:0007026!4.39e-14!155;UBERON:0004921!1.34e-13!129;UBERON:0004185!1.34e-13!129;UBERON:0004119!1.10e-12!169;UBERON:0000925!1.10e-12!169;UBERON:0006595!1.10e-12!169;UBERON:0000077!3.32e-12!130;UBERON:0005177!9.01e-12!107;UBERON:0000481!1.04e-11!347;UBERON:0000058!6.79e-10!26;UBERON:0000466!1.24e-09!126;UBERON:0001048!3.72e-09!168;UBERON:0000489!8.27e-09!32;UBERON:0000464!1.02e-08!104;UBERON:0005911!1.10e-08!82;UBERON:0000064!1.36e-08!219;UBERON:0000477!1.95e-08!286;UBERON:0009569!2.16e-08!113;UBERON:0001041!2.71e-08!98;UBERON:0000080!2.90e-08!18;UBERON:0002120!2.90e-08!18;UBERON:0004875!2.90e-08!18;UBERON:0005721!2.90e-08!18;UBERON:0005754!2.90e-08!18;UBERON:0007297!2.90e-08!18;UBERON:0009773!3.03e-08!12;UBERON:0001231!3.03e-08!12;UBERON:0004810!3.03e-08!12;UBERON:0003064!3.75e-08!37;UBERON:0004876!4.04e-08!20;UBERON:0000063!4.30e-08!97;UBERON:0006555!7.69e-08!17;UBERON:0005103!7.69e-08!17;UBERON:0000083!7.69e-08!17;UBERON:0009201!7.69e-08!17;UBERON:0004819!7.69e-08!17;UBERON:0006553!7.69e-08!17;UBERON:0003074!7.69e-08!17;UBERON:0003060!7.69e-08!17;UBERON:0000062!1.02e-07!511;UBERON:0002113!1.32e-07!27;UBERON:0003918!1.32e-07!27;UBERON:0005095!1.32e-07!27;UBERON:0007687!1.32e-07!27;UBERON:0004211!1.36e-07!16;UBERON:0001285!1.36e-07!16;UBERON:0007684!1.36e-07!16;UBERON:0003220!1.36e-07!16;UBERON:0004208!1.36e-07!16;UBERON:0006554!3.26e-07!44;UBERON:0003887!5.08e-07!21;UBERON:0005172!5.48e-07!55;UBERON:0005173!5.48e-07!55;UBERON:0008947!5.78e-07!38;UBERON:0003258!5.78e-07!38;UBERON:0001008!7.34e-07!45;UBERON:0005409!8.46e-07!35;UBERON:0003104!8.56e-07!238;UBERON:0009142!8.56e-07!238 | |ontology_enrichment_uberon=UBERON:0001007!4.39e-14!155;UBERON:0001555!4.39e-14!155;UBERON:0007026!4.39e-14!155;UBERON:0004921!1.34e-13!129;UBERON:0004185!1.34e-13!129;UBERON:0004119!1.10e-12!169;UBERON:0000925!1.10e-12!169;UBERON:0006595!1.10e-12!169;UBERON:0000077!3.32e-12!130;UBERON:0005177!9.01e-12!107;UBERON:0000481!1.04e-11!347;UBERON:0000058!6.79e-10!26;UBERON:0000466!1.24e-09!126;UBERON:0001048!3.72e-09!168;UBERON:0000489!8.27e-09!32;UBERON:0000464!1.02e-08!104;UBERON:0005911!1.10e-08!82;UBERON:0000064!1.36e-08!219;UBERON:0000477!1.95e-08!286;UBERON:0009569!2.16e-08!113;UBERON:0001041!2.71e-08!98;UBERON:0000080!2.90e-08!18;UBERON:0002120!2.90e-08!18;UBERON:0004875!2.90e-08!18;UBERON:0005721!2.90e-08!18;UBERON:0005754!2.90e-08!18;UBERON:0007297!2.90e-08!18;UBERON:0009773!3.03e-08!12;UBERON:0001231!3.03e-08!12;UBERON:0004810!3.03e-08!12;UBERON:0003064!3.75e-08!37;UBERON:0004876!4.04e-08!20;UBERON:0000063!4.30e-08!97;UBERON:0006555!7.69e-08!17;UBERON:0005103!7.69e-08!17;UBERON:0000083!7.69e-08!17;UBERON:0009201!7.69e-08!17;UBERON:0004819!7.69e-08!17;UBERON:0006553!7.69e-08!17;UBERON:0003074!7.69e-08!17;UBERON:0003060!7.69e-08!17;UBERON:0000062!1.02e-07!511;UBERON:0002113!1.32e-07!27;UBERON:0003918!1.32e-07!27;UBERON:0005095!1.32e-07!27;UBERON:0007687!1.32e-07!27;UBERON:0004211!1.36e-07!16;UBERON:0001285!1.36e-07!16;UBERON:0007684!1.36e-07!16;UBERON:0003220!1.36e-07!16;UBERON:0004208!1.36e-07!16;UBERON:0006554!3.26e-07!44;UBERON:0003887!5.08e-07!21;UBERON:0005172!5.48e-07!55;UBERON:0005173!5.48e-07!55;UBERON:0008947!5.78e-07!38;UBERON:0003258!5.78e-07!38;UBERON:0001008!7.34e-07!45;UBERON:0005409!8.46e-07!35;UBERON:0003104!8.56e-07!238;UBERON:0009142!8.56e-07!238 | ||
|ontology_enrichment_uberon_v019=UBERON:0004211;2.43e-16;10!UBERON:0009773;2.43e-16;10!UBERON:0001231;2.43e-16;10!UBERON:0004810;2.43e-16;10!UBERON:0002113;1.26e-12;24!UBERON:0011143;1.26e-12;24!UBERON:0006555;3.10e-12;15!UBERON:0004819;3.10e-12;15!UBERON:0001285;3.10e-12;15!UBERON:0007684;3.10e-12;15!UBERON:0000489;9.71e-10;29!UBERON:0006554;2.78e-09;30!UBERON:0001008;2.78e-09;30!UBERON:0001225;3.60e-08;12!UBERON:0008987;3.60e-08;12!UBERON:0001851;6.88e-08;15!UBERON:0005172;1.50e-07;52!UBERON:0005173;1.50e-07;52 | |||
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| ||
|short_description=p12@RGS3 | |short_description=p12@RGS3 | ||
}} | }} |
Latest revision as of 07:03, 20 September 2015
Short description: | p12@RGS3 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_12_at_RGS3_5end |
Coexpression cluster: | C4792_small_left_aorta_carcinoid_MCF7_adenocarcinoma_Renal |
Association with transcript: | -10bp_to_ENST00000478599, NM_017790, uc004bhr.2, uc004bhs.2_5end |
EntrezGene: | RGS3 |
HGNC: | 9999 |
UniProt: | B3KWG8P49796Q9NX91 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
epithelial cell | 7.15e-22 | 253 |
kidney tubule cell | 2.19e-16 | 10 |
nephron tubule epithelial cell | 2.19e-16 | 10 |
kidney cell | 1.13e-14 | 17 |
kidney epithelial cell | 1.13e-14 | 17 |
epithelial cell of nephron | 3.34e-12 | 15 |
kidney cortical cell | 4.27e-08 | 12 |
renal cortical epithelial cell | 4.27e-08 | 12 |
Ontology term | p-value | n |
---|---|---|
nephron tubule epithelium | 2.19e-16 | 10 |
nephron epithelium | 3.34e-12 | 15 |
renal tubule | 3.34e-12 | 15 |
nephron tubule | 3.34e-12 | 15 |
nephron | 3.34e-12 | 15 |
uriniferous tubule | 3.34e-12 | 15 |
nephrogenic mesenchyme | 3.34e-12 | 15 |
kidney | 1.86e-11 | 26 |
kidney mesenchyme | 1.86e-11 | 26 |
upper urinary tract | 1.86e-11 | 26 |
kidney rudiment | 1.86e-11 | 26 |
kidney field | 1.86e-11 | 26 |
excretory tube | 2.93e-11 | 16 |
kidney epithelium | 2.93e-11 | 16 |
abdomen element | 1.69e-10 | 54 |
abdominal segment element | 1.69e-10 | 54 |
trunk region element | 6.93e-10 | 101 |
subdivision of trunk | 1.82e-09 | 112 |
cavitated compound organ | 5.92e-09 | 31 |
abdominal segment of trunk | 7.94e-09 | 60 |
abdomen | 7.94e-09 | 60 |
cortex of kidney | 4.27e-08 | 12 |
renal parenchyma | 4.27e-08 | 12 |
cortex | 8.79e-08 | 15 |
compound organ | 6.22e-07 | 68 |
Ontology term | p-value | n |
---|---|---|
carcinoma | 1.58e-31 | 106 |
cell type cancer | 1.06e-30 | 143 |
cancer | 1.58e-16 | 235 |
disease of cellular proliferation | 8.69e-16 | 239 |
bronchus cancer | 3.48e-12 | 7 |
bronchogenic carcinoma | 3.48e-12 | 7 |
adenocarcinoma | 9.36e-12 | 25 |
lung small cell carcinoma | 1.64e-07 | 4 |
respiratory system cancer | 3.95e-07 | 16 |
disease of anatomical entity | 5.72e-07 | 39 |
lung carcinoma | 8.69e-07 | 9 |