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{{f5samples
{{f5samples
|DRA_sample_Accession=CAGE@SAMD00005065
|DRA_sample_Accession_RNASeq=sRNA-Seq@SAMD00005065
|accession_numbers=CAGE;DRX008308;DRR009180;DRZ000605;DRZ001990;DRZ011955;DRZ013340
|accession_numbers_RNASeq=sRNA-Seq;DRX037267;DRR041633;DRZ007275
|ancestors_in_anatomy_facet=UBERON:0000468,UBERON:0002107,UBERON:0002100,UBERON:0001007,UBERON:0004119,UBERON:0000062,UBERON:0000475,UBERON:0000061,UBERON:0000465,UBERON:0000467,UBERON:0001062,UBERON:0000480,UBERON:0009569,UBERON:0002368,UBERON:0005177,UBERON:0002365,UBERON:0005172,UBERON:0006925,UBERON:0002530,UBERON:0010317,UBERON:0005173,UBERON:0002417,UBERON:0000949,UBERON:0002330,UBERON:0000916,UBERON:0002423
|ancestors_in_anatomy_facet=UBERON:0000468,UBERON:0002107,UBERON:0002100,UBERON:0001007,UBERON:0004119,UBERON:0000062,UBERON:0000475,UBERON:0000061,UBERON:0000465,UBERON:0000467,UBERON:0001062,UBERON:0000480,UBERON:0009569,UBERON:0002368,UBERON:0005177,UBERON:0002365,UBERON:0005172,UBERON:0006925,UBERON:0002530,UBERON:0010317,UBERON:0005173,UBERON:0002417,UBERON:0000949,UBERON:0002330,UBERON:0000916,UBERON:0002423
|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000548,CL:0000066,CL:0002371,CL:0000181,CL:0000417,CL:0000668,CL:0000412,CL:0000255,CL:0000182
|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000548,CL:0000066,CL:0002371,CL:0000181,CL:0000417,CL:0000668,CL:0000412,CL:0000255,CL:0000182
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|created_by=
|created_by=
|creation_date=
|creation_date=
|datafreeze_phase=1
|data_phase=2
|datafreeze_phase=2
|def=
|def=
|expression_enrichment_score=chr17:26697304..26697335,-!p1@SEBOX,p1@VTN!3.64!4316.58!SEBOX;;chr17:26697276..26697303,-!p2@SEBOX,p2@VTN!2.95!894.37!SEBOX;;chr19:4153613..4153652,+!p1@CREB3L3!2.69!491.41!CREB3L3;;chr17:26697257..26697268,-!p3@SEBOX,p3@VTN!2.69!487.48!SEBOX;;chr7:73038839..73038862,-!p1@MLXIPL!2.28!187.72!MLXIPL;;chr19:50432453..50432468,+!p1@ATF5!2.15!7183.48!ATF5;;chr15:53082521..53082549,-!p1@ONECUT1!2.15!140.54!ONECUT1;;chr1:214161272..214161322,+!p1@PROX1!2.02!143.49!PROX1;;chr12:100867627..100867652,+!p1@NR1H4!2.00!99.27!NR1H4;;chr12:100867653..100867677,+!p2@NR1H4!1.96!90.42!NR1H4;;chr20:43029862..43029900,+!p1@HNF4A!1.93!83.54!HNF4A;;chr19:33793430..33793447,-!p1@CEBPA!1.91!322.37!CEBPA;;chr19:50435736..50435781,+!p3@ATF5!1.85!94.35!ATF5;;chr19:46367576..46367592,+!p1@FOXA3!1.82!64.87!FOXA3;;chr1:27240455..27240474,-!p1@NR0B2!1.77!57.99!NR0B2;;chr1:201979743..201979762,+!p1@ELF3!1.71!50.12!ELF3;;chr1:201979703..201979721,+!p2@ELF3!1.66!45.21!ELF3;;chr20:42984330..42984364,+!p2@HNF4A!1.66!45.21!HNF4A;;chr14:38064429..38064486,-!p1@FOXA1!1.61!39.31!FOXA1;;chr16:85932760..85932775,+!p1@IRF8!1.59!38.33!IRF8;;chr2:46524897..46524911,+!p2@EPAS1!1.54!90.42!EPAS1;;chr8:76319876..76319926,+!p1@HNF4G!1.54!33.42!HNF4G;;chr1:199996733..199996781,+!p1@NR5A2!1.46!27.52!NR5A2;;chr7:73038867..73038878,-!p2@MLXIPL!1.44!26.54!MLXIPL;;chr8:11561684..11561751,+!p1@GATA4!1.44!26.54!GATA4;;chr6:126240380..126240430,+!p2@NCOA7!1.43!65.85!NCOA7;;chr19:4153719..4153730,+!p2@CREB3L3!1.42!25.55!CREB3L3;;chr17:26694979..26695007,-!p4@SEBOX!1.42!25.55!SEBOX;;chr8:71316428..71316459,-!p2@NCOA2!1.41!41.28!NCOA2;;chr19:50435673..50435690,+!p8@ATF5!1.39!23.59!ATF5;;chr17:53344945..53344977,+!p2@HLF!1.37!22.61!HLF;;chr20:51589133..51589159,+!p2@TSHZ2!1.35!21.62!TSHZ2;;chr9:137217986..137218049,+!p3@RXRA!1.33!57.99!RXRA;;chr11:61520075..61520136,+!p1@C11orf9!1.32!41.28!C11orf9;;chr6:126240356..126240379,+!p7@NCOA7!1.29!22.61!NCOA7;;chr12:100897130..100897149,+!p3@NR1H4!1.29!18.67!NR1H4;;chr16:67198683..67198698,+!p2@HSF4!1.29!18.67!HSF4;;chr1:151804244..151804310,-!p1@RORC!1.29!18.67!RORC;;chr17:17726907..17726958,-!p2@SREBF1!1.28!108.11!SREBF1;;chrX:131547625..131547644,-!p4@MBNL3!1.27!17.69!MBNL3;;chrY:21906594..21906622,-!p1@KDM5D!1.27!17.69!KDM5D;;chr16:51185318..51185348,-!p2@SALL1!1.22!15.73!SALL1;;chr1:199996702..199996732,+!p5@NR5A2!1.20!14.74!NR5A2;;chr20:22564895..22564910,-!p1@FOXA2!1.20!14.74!FOXA2;;chr8:71316403..71316427,-!p6@NCOA2!1.17!16.71!NCOA2;;chr17:53342311..53342400,+!p1@HLF!1.17!15.73!HLF;;chr19:50435704..50435718,+!p11@ATF5!1.17!13.76!ATF5;;chr6:91006518..91006570,-!p1@BACH2!1.14!29.48!BACH2;;chrY:2803415..2803468,+!p1@ZFY!1.14!12.78!ZFY;;chr10:94449703..94449718,+!p1@HHEX!1.12!47.18!HHEX;;chr17:17723626..17723663,-!p4@SREBF1!1.11!24.57!SREBF1;;chr22:29196492..29196503,-!p3@XBP1!1.11!18.67!XBP1;;chr2:68592406..68592424,+!p1@PLEK!1.11!11.79!PLEK;;chr11:47400078..47400106,-!p1@SPI1!1.11!11.79!SPI1;;chr17:26694940..26694949,-!p6@SEBOX!1.11!11.79!SEBOX;;chr1:214161358..214161377,+!p3@PROX1!1.11!11.79!PROX1;;chr11:47279504..47279563,+!p1@NR1H3!1.07!24.57!NR1H3;;chr3:126073018..126073036,-!p3@KLF15!1.07!10.81!KLF15;;chr3:147111198..147111225,+!p4@ZIC1!1.07!10.81!ZIC1;;chr19:50434005..50434020,+!p10@ATF5!1.07!10.81!ATF5;;chr1:119457098..119457116,-!p12@TBX15!1.07!10.81!TBX15;;chr18:55102598..55102623,+!p1@ONECUT2!1.07!10.81!ONECUT2;;chr22:46546494..46546525,+!p2@PPARA!1.06!20.64!PPARA;;chr7:113726357..113726443,+!p1@FOXP2!1.05!17.69!FOXP2;;chr22:29196433..29196445,-!p4@XBP1!1.03!10.81!XBP1;;chr15:53082178..53082190,-!p3@ONECUT1!1.03!9.83!ONECUT1;;chr1:161208013..161208038,-!p1@NR1I3!1.03!9.83!NR1I3;;chr1:214161328..214161348,+!p2@PROX1!1.03!9.83!PROX1;;chr22:29196547..29196563,-!p2@XBP1!1.02!352.83!XBP1;;chr18:6414884..6414942,-!p1@L3MBTL4!1.01!11.79!L3MBTL4;;chr11:113930291..113930339,+!p2@ZBTB16!1.00!14.74!ZBTB16;;chr9:137218281..137218340,+!p1@RXRA!0.99!255.54!RXRA;;chrX:57619083..57619113,+!p1@ZXDB!0.99!8.85!ZXDB;;chr16:52581025..52581072,-!p1@TOX3!0.99!8.85!TOX3;;chr17:26694801..26694812,-!p5@SEBOX!0.99!8.85!SEBOX;;chr17:26694831..26694842,-!p8@SEBOX!0.99!8.85!SEBOX;;chr6:151977801..151977813,+!p8@ESR1!0.99!8.85!ESR1;;chr7:99621306..99621328,+!p5@ZKSCAN1!0.99!8.85!ZKSCAN1;;chr3:126076242..126076257,-!p1@KLF15!0.98!10.81!KLF15;;chr2:10091815..10091864,+!p1@GRHL1!0.96!10.81!GRHL1;;chr3:12329397..12329433,+!p2@PPARG!0.95!18.67!PPARG;;chr16:88519743..88519754,+!p2@ZFPM1!0.95!8.85!ZFPM1;;chr17:26695013..26695024,-!p7@SEBOX!0.95!7.86!SEBOX;;chr17:53344980..53345011,+!p3@HLF!0.95!7.86!HLF;;chr3:147111231..147111281,+!p3@ZIC1!0.95!7.86!ZIC1;;chr14:38064590..38064606,-!p2@FOXA1!0.95!7.86!FOXA1;;chr6:126221034..126221056,+!p13@NCOA7!0.95!7.86!NCOA7;;chr6:391743..391759,+!p1@IRF4!0.95!7.86!IRF4;;chr7:73038865..73038866,-!p4@MLXIPL!0.95!7.86!MLXIPL;;chr1:200011711..200011752,+!p3@NR5A2!0.95!7.86!NR5A2;;chr21:40177845..40177863,+!p1@ETS2!0.94!468.81!ETS2;;chr2:46524878..46524891,+!p3@EPAS1!0.94!13.76!EPAS1;;chr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|fantom_cat=http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000066;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000182;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000223;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0000949;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0001007;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0002107;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0002365;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0002368;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0002423;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0003929;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0005911;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0007499;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0009854
|ffid_belonging_in_development=CL:0000134,CL:0000223
|ffid_belonging_in_development=CL:0000134,CL:0000223
|fonse_cell_line=
|fonse_cell_line=
Line 38: Line 44:
|fonse_treatment_closure=
|fonse_treatment_closure=
|has_quality=
|has_quality=
|hg19bam=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/Hepatocyte%252c%2520donor2.CNhs12349.11603-120I1.hg19.nobarcode.bam
|hg19ctss=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/Hepatocyte%252c%2520donor2.CNhs12349.11603-120I1.hg19.ctss.bed.gz
|hg19fasta=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/Hepatocyte%252c%2520donor2.CNhs12349.11603-120I1.hg19.nobarcode.rdna.fa.gz
|hg38bam=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.primary_cell.hCAGE/Hepatocyte%252c%2520donor2.CNhs12349.11603-120I1.hg38.nobarcode.bam
|hg38ctss=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.primary_cell.hCAGE/Hepatocyte%252c%2520donor2.CNhs12349.11603-120I1.hg38.nobarcode.ctss.bed.gz
|id=FF:11603-120I1
|id=FF:11603-120I1
|is_a=EFO:0002091;;FF:0000078
|is_a=EFO:0002091;;FF:0000078
|is_obsolete=
|is_obsolete=
|library_id=CNhs12349
|library_id_phase_based=2:CNhs12349
|microRNAs=
|microRNAs_nn=
|microRNAs_nonnovel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer/#/human#cage;sample;11603
|microRNAs_nonnovel_srna=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2016/vis_viewer/#/human#srna;sample;SRhi10066.AGTTCC.11603
|microRNAs_novel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer_novel/#/human#cage;sample;11603
|microRNAs_novel_srna=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2016/vis_viewer_novel/#/human#srna;sample;SRhi10066.AGTTCC.11603
|name=Hepatocyte, donor2
|name=Hepatocyte, donor2
|namespace=FANTOM5
|namespace=FANTOM5
Line 46: Line 65:
|profile_cagescan=,,,
|profile_cagescan=,,,
|profile_hcage=CNhs12349,LSID913,release011,COMPLETED
|profile_hcage=CNhs12349,LSID913,release011,COMPLETED
|profile_rnaseq=,,,
|profile_rnaseq=
|profile_srnaseq=,,,
|profile_srnaseq=,,,
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Line 61: Line 82:
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|sample_cell_line=
Line 83: Line 106:
|top_motifs=HNF1A:6.65549531596;HNF4A_NR2F1,2:5.8252131274;FOXA2:4.98107583832;NR6A1:4.43411433712;RXR{A,B,G}_{NR1H2,PPAR}dimers:4.06915884956;STAT2,4,6:3.49887799375;CUX2:2.80770407046;FOX{F1,F2,J1}:2.77450416568;AR:2.55679763246;BPTF:2.37043993093;NKX2-1,4:2.36913389136;ARID5B:2.20015929911;EVI1:1.99054941932;NFE2L1:1.94766619209;MTF1:1.9163991095;FOXQ1:1.78116914507;ALX4:1.73044193195;POU6F1:1.6756523842;CEBPA,B_DDIT3:1.62946010527;NR1H4:1.57160284591;FOXD3:1.55349547374;FOXM1:1.42719327397;TAL1_TCF{3,4,12}:1.38301299308;PPARG:1.3214122391;ADNP_IRX_SIX_ZHX:1.28907404876;GATA6:1.26163595698;MYOD1:1.23682801526;GLI1..3:1.18127140454;DBP:1.13107356936;FOX{D1,D2}:1.12431648238;T:1.04218508986;NFIL3:0.964172117782;RXRA_VDR{dimer}:0.879085319748;IRF7:0.844193707636;SNAI1..3:0.835051057386;LMO2:0.831349438617;HLF:0.791784430382;ZEB1:0.790712820737;FOXP3:0.745310251749;TEF:0.710863102282;TFCP2:0.671884402127;PAX1,9:0.662520809282;ONECUT1,2:0.653959178452;TBP:0.640287419455;NKX3-2:0.606954620972;bHLH_family:0.55749102145;FOX{I1,J2}:0.532387301399;PAX3,7:0.492909830439;NR5A1,2:0.459063704902;HIF1A:0.4362110993;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:0.422784419439;CRX:0.414536172052;TLX2:0.395671907438;RXR{A,B,G}:0.388074384783;HMGA1,2:0.385020285099;RBPJ:0.371147341839;HOX{A4,D4}:0.344557490183;PAX4:0.296443551795;NFIX:0.288032929524;MAFB:0.286435444336;UFEwm:0.28085317854;ZBTB16:0.280274268046;PAX6:0.261451193819;PDX1:0.130457852331;FOXL1:0.108596530556;IKZF2:0.0982240383436;FOXP1:0.0632286397476;HAND1,2:0.0409322060421;NKX2-2,8:0.0286983026687;MYFfamily:-0.0675971099326;RORA:-0.0711830508907;MTE{core}:-0.0863993777856;EP300:-0.111612710643;ALX1:-0.144937034047;MED-1{core}:-0.169944113954;HES1:-0.172875349282;SMAD1..7,9:-0.176357536458;NHLH1,2:-0.195232368352;SP1:-0.217747570357;CDX1,2,4:-0.22669293263;PBX1:-0.226844388431;HIC1:-0.235199361539;YY1:-0.247795338284;TLX1..3_NFIC{dimer}:-0.247915935134;REST:-0.260325278086;MAZ:-0.273380184125;IRF1,2:-0.300126467055;SPI1:-0.301066168917;VSX1,2:-0.318020665596;NFKB1_REL_RELA:-0.327433695767;STAT1,3:-0.334395045134;TGIF1:-0.364744534321;ATF6:-0.378193712776;SREBF1,2:-0.402813870757;SPIB:-0.425806096436;NFE2:-0.446006143499;ZNF143:-0.446696623329;PAX2:-0.470674327406;ELF1,2,4:-0.498654738134;EN1,2:-0.49884658606;HOX{A5,B5}:-0.522293891042;STAT5{A,B}:-0.546378855108;RUNX1..3:-0.557304863478;ETS1,2:-0.568962054957;ZNF423:-0.574390361244;FOXN1:-0.597473892476;AIRE:-0.599334708501;MEF2{A,B,C,D}:-0.601389325833;DMAP1_NCOR{1,2}_SMARC:-0.602983045857;EBF1:-0.632298767855;HOXA9_MEIS1:-0.635090651589;GTF2A1,2:-0.638738950202;TFAP4:-0.667494156167;GCM1,2:-0.706217846602;SOX{8,9,10}:-0.71056046552;ATF5_CREB3:-0.714489504404;ZFP161:-0.71487313878;TP53:-0.726729419758;PITX1..3:-0.745555708466;TEAD1:-0.750287631556;POU2F1..3:-0.762100230793;GTF2I:-0.768774196924;EGR1..3:-0.783190602749;RREB1:-0.790275066201;LHX3,4:-0.797554392169;FOS_FOS{B,L1}_JUN{B,D}:-0.809207030445;PATZ1:-0.81047696821;TFAP2B:-0.821259576134;BACH2:-0.826868455091;ZNF238:-0.836260237543;OCT4_SOX2{dimer}:-0.850590631607;PRDM1:-0.861142570426;BREu{core}:-0.863486706824;KLF4:-0.875776340762;TOPORS:-0.88553355275;NFE2L2:-0.896751293167;SOX5:-0.92334682833;POU5F1:-0.92894654221;ZNF148:-0.943594342133;POU3F1..4:-0.945861153116;PAX5:-0.957441851565;FOSL2:-0.957889020903;NFY{A,B,C}:-0.980852368787;ESR1:-0.992168219952;TFAP2{A,C}:-0.995177280221;ATF2:-1.00151870904;NFATC1..3:-1.00428612554;MYBL2:-1.00791810141;ESRRA:-1.01240312871;GFI1B:-1.02191251905;GFI1:-1.02629357181;HMX1:-1.04252605078;LEF1_TCF7_TCF7L1,2:-1.05420612686;AHR_ARNT_ARNT2:-1.05673893204;TBX4,5:-1.06116839425;ELK1,4_GABP{A,B1}:-1.09455307427;ZBTB6:-1.14666550357;GZF1:-1.17041838293;NR3C1:-1.17474575855;PRRX1,2:-1.20116986782;SPZ1:-1.21628413378;SRF:-1.21773027025;TFDP1:-1.3086258572;CDC5L:-1.33480686145;E2F1..5:-1.33800357631;IKZF1:-1.35793441118;GATA4:-1.3682301698;POU1F1:-1.38955795321;ATF4:-1.39420279749;RFX1:-1.3957727093;NRF1:-1.39866370415;JUN:-1.4143409126;FOXO1,3,4:-1.42485180086;CREB1:-1.4277968685;SOX17:-1.43732530083;MYB:-1.44333820843;XCPE1{core}:-1.44636086224;HBP1_HMGB_SSRP1_UBTF:-1.54096540199;NKX6-1,2:-1.56615881915;RFX2..5_RFXANK_RFXAP:-1.57394093522;NANOG{mouse}:-1.59001671872;ZIC1..3:-1.60032594321;NKX2-3_NKX2-5:-1.60825442786;MZF1:-1.6990672721;HSF1,2:-1.7610812492;NKX3-1:-1.84837146953;SOX2:-1.8648003746;ZNF384:-1.87171673586;HOX{A6,A7,B6,B7}:-1.94567448692;NANOG:-1.95433601362;XBP1:-2.00779966803;PAX8:-2.53869878951
|top_motifs=HNF1A:6.65549531596;HNF4A_NR2F1,2:5.8252131274;FOXA2:4.98107583832;NR6A1:4.43411433712;RXR{A,B,G}_{NR1H2,PPAR}dimers:4.06915884956;STAT2,4,6:3.49887799375;CUX2:2.80770407046;FOX{F1,F2,J1}:2.77450416568;AR:2.55679763246;BPTF:2.37043993093;NKX2-1,4:2.36913389136;ARID5B:2.20015929911;EVI1:1.99054941932;NFE2L1:1.94766619209;MTF1:1.9163991095;FOXQ1:1.78116914507;ALX4:1.73044193195;POU6F1:1.6756523842;CEBPA,B_DDIT3:1.62946010527;NR1H4:1.57160284591;FOXD3:1.55349547374;FOXM1:1.42719327397;TAL1_TCF{3,4,12}:1.38301299308;PPARG:1.3214122391;ADNP_IRX_SIX_ZHX:1.28907404876;GATA6:1.26163595698;MYOD1:1.23682801526;GLI1..3:1.18127140454;DBP:1.13107356936;FOX{D1,D2}:1.12431648238;T:1.04218508986;NFIL3:0.964172117782;RXRA_VDR{dimer}:0.879085319748;IRF7:0.844193707636;SNAI1..3:0.835051057386;LMO2:0.831349438617;HLF:0.791784430382;ZEB1:0.790712820737;FOXP3:0.745310251749;TEF:0.710863102282;TFCP2:0.671884402127;PAX1,9:0.662520809282;ONECUT1,2:0.653959178452;TBP:0.640287419455;NKX3-2:0.606954620972;bHLH_family:0.55749102145;FOX{I1,J2}:0.532387301399;PAX3,7:0.492909830439;NR5A1,2:0.459063704902;HIF1A:0.4362110993;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:0.422784419439;CRX:0.414536172052;TLX2:0.395671907438;RXR{A,B,G}:0.388074384783;HMGA1,2:0.385020285099;RBPJ:0.371147341839;HOX{A4,D4}:0.344557490183;PAX4:0.296443551795;NFIX:0.288032929524;MAFB:0.286435444336;UFEwm:0.28085317854;ZBTB16:0.280274268046;PAX6:0.261451193819;PDX1:0.130457852331;FOXL1:0.108596530556;IKZF2:0.0982240383436;FOXP1:0.0632286397476;HAND1,2:0.0409322060421;NKX2-2,8:0.0286983026687;MYFfamily:-0.0675971099326;RORA:-0.0711830508907;MTE{core}:-0.0863993777856;EP300:-0.111612710643;ALX1:-0.144937034047;MED-1{core}:-0.169944113954;HES1:-0.172875349282;SMAD1..7,9:-0.176357536458;NHLH1,2:-0.195232368352;SP1:-0.217747570357;CDX1,2,4:-0.22669293263;PBX1:-0.226844388431;HIC1:-0.235199361539;YY1:-0.247795338284;TLX1..3_NFIC{dimer}:-0.247915935134;REST:-0.260325278086;MAZ:-0.273380184125;IRF1,2:-0.300126467055;SPI1:-0.301066168917;VSX1,2:-0.318020665596;NFKB1_REL_RELA:-0.327433695767;STAT1,3:-0.334395045134;TGIF1:-0.364744534321;ATF6:-0.378193712776;SREBF1,2:-0.402813870757;SPIB:-0.425806096436;NFE2:-0.446006143499;ZNF143:-0.446696623329;PAX2:-0.470674327406;ELF1,2,4:-0.498654738134;EN1,2:-0.49884658606;HOX{A5,B5}:-0.522293891042;STAT5{A,B}:-0.546378855108;RUNX1..3:-0.557304863478;ETS1,2:-0.568962054957;ZNF423:-0.574390361244;FOXN1:-0.597473892476;AIRE:-0.599334708501;MEF2{A,B,C,D}:-0.601389325833;DMAP1_NCOR{1,2}_SMARC:-0.602983045857;EBF1:-0.632298767855;HOXA9_MEIS1:-0.635090651589;GTF2A1,2:-0.638738950202;TFAP4:-0.667494156167;GCM1,2:-0.706217846602;SOX{8,9,10}:-0.71056046552;ATF5_CREB3:-0.714489504404;ZFP161:-0.71487313878;TP53:-0.726729419758;PITX1..3:-0.745555708466;TEAD1:-0.750287631556;POU2F1..3:-0.762100230793;GTF2I:-0.768774196924;EGR1..3:-0.783190602749;RREB1:-0.790275066201;LHX3,4:-0.797554392169;FOS_FOS{B,L1}_JUN{B,D}:-0.809207030445;PATZ1:-0.81047696821;TFAP2B:-0.821259576134;BACH2:-0.826868455091;ZNF238:-0.836260237543;OCT4_SOX2{dimer}:-0.850590631607;PRDM1:-0.861142570426;BREu{core}:-0.863486706824;KLF4:-0.875776340762;TOPORS:-0.88553355275;NFE2L2:-0.896751293167;SOX5:-0.92334682833;POU5F1:-0.92894654221;ZNF148:-0.943594342133;POU3F1..4:-0.945861153116;PAX5:-0.957441851565;FOSL2:-0.957889020903;NFY{A,B,C}:-0.980852368787;ESR1:-0.992168219952;TFAP2{A,C}:-0.995177280221;ATF2:-1.00151870904;NFATC1..3:-1.00428612554;MYBL2:-1.00791810141;ESRRA:-1.01240312871;GFI1B:-1.02191251905;GFI1:-1.02629357181;HMX1:-1.04252605078;LEF1_TCF7_TCF7L1,2:-1.05420612686;AHR_ARNT_ARNT2:-1.05673893204;TBX4,5:-1.06116839425;ELK1,4_GABP{A,B1}:-1.09455307427;ZBTB6:-1.14666550357;GZF1:-1.17041838293;NR3C1:-1.17474575855;PRRX1,2:-1.20116986782;SPZ1:-1.21628413378;SRF:-1.21773027025;TFDP1:-1.3086258572;CDC5L:-1.33480686145;E2F1..5:-1.33800357631;IKZF1:-1.35793441118;GATA4:-1.3682301698;POU1F1:-1.38955795321;ATF4:-1.39420279749;RFX1:-1.3957727093;NRF1:-1.39866370415;JUN:-1.4143409126;FOXO1,3,4:-1.42485180086;CREB1:-1.4277968685;SOX17:-1.43732530083;MYB:-1.44333820843;XCPE1{core}:-1.44636086224;HBP1_HMGB_SSRP1_UBTF:-1.54096540199;NKX6-1,2:-1.56615881915;RFX2..5_RFXANK_RFXAP:-1.57394093522;NANOG{mouse}:-1.59001671872;ZIC1..3:-1.60032594321;NKX2-3_NKX2-5:-1.60825442786;MZF1:-1.6990672721;HSF1,2:-1.7610812492;NKX3-1:-1.84837146953;SOX2:-1.8648003746;ZNF384:-1.87171673586;HOX{A6,A7,B6,B7}:-1.94567448692;NANOG:-1.95433601362;XBP1:-2.00779966803;PAX8:-2.53869878951
|xref=
|xref=
|zenbu_report=https://fantom.gsc.riken.jp/zenbu/reports/#miRNA_expression_atlas_human;search_select_hide=table111:FF:11603-120I1;search_select_hide=table117:FF:11603-120I1
}}
}}

Latest revision as of 18:11, 4 June 2020

Name:Hepatocyte, donor2
Species:Human (Homo sapiens)
Library ID:CNhs12349
Sample type:primary cells
Genomic View: UCSC
RefEX:Specific genes
FANTOM CAT:1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 13
CAGEd-oPOSSUM:link
ZENBU report :link
Additional information
Sample information
strainNA
tissueliver
dev stageNA
sexNA
ageNA
cell typehepatocyte
cell lineNA
companySciencell/3H
collaborationFANTOM5 OSC CORE (contact: Al Forrest)
External link for information[{{{sample_info_link}}} {{{sample_info_link}}}]
RNA information
lot numberNA
catalog numberSC5205
sample typetotal RNA
extraction protocol (Details)OP-RNA-extraction-totalRNA-TRIzol-ethanol-v1.0

CAGE Accession numbers
MethodSample accession id
CAGE  SAMD00005065
Library accession numbers

Library idMethodExp. accession idRun accession id
CNhs12349 CAGE DRX008308 DRR009180
Accession ID Hg19

Library idBAMCTSS
CNhs12349 DRZ000605 DRZ001990
Accession ID Hg38

Library idBAMCTSS
CNhs12349 DRZ011955 DRZ013340
Download raw sequence, BAM & CTSS
Hg19
FastaBAMCTSS
downloaddownloaddonwload
Hg38
BAMCTSS
downloaddonwload

RNA-Seq Accession numbers
MethodSample accession id
sRNA-Seq  SAMD00005065
Library accession numbers

Library idMethodExp. accession idRun accession id
SRhi10066.AGTTCC sRNA-Seq DRX037267 DRR041633
Accession ID Hg19

Library idBAMCTSS
SRhi10066.AGTTCC DRZ007275


Relative expression to median (log10)

Transcription factors with enriched expression in this sampleRanked list of transcription factor promoter expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.



Co-expression clusters with enriched expression in this sampleRanked list of co-expression cluster expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed. <br>Analyst:NA <br><br>link to dataset.<br>data

Coexpression clusterscore
C0-CD14-Eosinophils-Neutrophils-Basophils-CD34-immature-Peripheral0
C1-testis-epididymis-embryonic-medulla-pituitary-trachea-caudate0
C10-occipital-temporal-parietal-brain-duodenum-Neurons-Neural0
C100-rhabdomyosarcoma-gastric-pineal-Wilms-cervical-mesodermal-endometrial0
C101-small-cerebellum-maxillary-colon-parietal-epididymis-merkel0
C102-neuroblastoma-testicular-pituitary-carcinosarcoma-rectum-acantholytic-iPS0
C103-CD4-CD8-Natural-Peripheral-Whole-Neutrophils-Basophils0
C104-Mast-Basophils-immature-CD14-CD34-eye-Natural0
C105-heart-skeletal-occipital-hippocampus-acute-Sebocyte-penis0.381
C106-Hep2-epitheloid-placenta-cervical-rectal-anaplastic-glassy0
C107-Neutrophils-CD14-Eosinophils-Monocytederived-Whole-Peripheral-blood0
C108-breast-hepatoblastoma-MCF7-parotid-salivary-submaxillary-prostate0
C109-Reticulocytes-non-acute-Hodgkin-Burkitt-retinoblastoma-lymphoma-0.452
C11-cerebellum-medulla-pons-parietal-occipital-middle-medial0
C110-leukemia-chronic-Eosinophils-acute-Whole-CD34-Lymphatic0
C111-medulla-lung-trachea-testis-caudate-epididymis-throat0
C112-gastric-pancreas-temporal-duodenum-small-extraskeletal-adrenal0
C113-thyroid-throat-lung-lymph-small-colon-trachea0
C114-teratocarcinoma-medulloblastoma-carcinosarcoma-iPS-anaplastic-acute-neuroblastoma0
C115-pituitary-Neural-caudate-putamen-amygdala-medulla-hippocampus0
C116-myeloma-xeroderma-tonsil-CD19-spleen-lymph-trachea0
C117-serous-clear-kidney-neuroectodermal-mesothelioma-endometrial-Intestinal0
C118-cerebellum-parietal-occipital-medial-middle-frontal-insula0
C119-CD4-CD8-Natural-Neutrophils-CD14-Peripheral-CD190
C12-Mast-Basophils-immature-chorionic-mature-CD14-Eosinophils0
C120-immature-salivary-tongue-skin-cervical-CD14-CD340
C121-NK-Natural-CD8-CD4-anaplastic-chronic-B0
C122-chronic-Reticulocytes-skeletal-leukemia-acute-colon-Tracheal0
C123-CD19-Natural-CD8-CD4-CD14-Peripheral-Basophils0
C124-small-temporal-duodenum-colon-gall-signet-Hepatocyte0
C125-mucinous-alveolar-mesothelioma-Smooth-lung-CD14-Nucleus0
C126-gastrointestinal-argyrophil-smallcell-merkel-bile-insula-brain0
C127-maxillary-small-hepatoblastoma-hepatocellular-alveolar-colon-argyrophil0
C128-testicular-choriocarcinoma-H9-teratocarcinoma-pancreatic-iPS-HES3GFP0
C129-liver-Hepatocyte-colon-duodenum-temporal-testicular-small0.596
C13-Neutrophils-Eosinophils-CD14-Monocytederived-Whole-Peripheral-CD40
C130-iPS-HES3GFP-H9-teratocarcinoma-testicular-colon-Alveolar0
C131-lung-trachea-Alveolar-thyroid-umbilical-throat-skin0
C132-acute-small-Dendritic-Macrophage-CD14-Neutrophils-Monocytederived0
C133-signet-gall-small-kidney-colon-ductal-adenocarcinoma0
C134-skeletal-diaphragm-tongue-throat-Skeletal-skin-penis0
C135-neuroblastoma-retinoblastoma-carcinoid-choriocarcinoma-testicular-acute-rectum0
C136-Wilms-extraskeletal-anaplastic-rhabdomyosarcoma-cholangiocellular-nonsmall-neuroectodermal0
C137-large-ductal-melanoma-cervical-Endothelial-Smooth-chronic0
C138-diffuse-Burkitt-lymphangiectasia-lymphoma-acute-CD19-pineal0
C139-astrocytoma-skin-salivary-gall-serous-Mallassezderived-renal0
C14-Whole-blood-Reticulocytes-liver-Neutrophils-Eosinophils-spleen0
C140-Renal-Endothelial-Hepatic-Lymphatic-heart-lung-spleen0
C141-Hodgkin-acute-thymus-chronic-vein-CD4-B0
C142-Preadipocyte-Fibroblast-hepatic-Ewing-Adipocyte-Olfactory-Hair0
C143-Monocytederived-CD14-Macrophage-Dendritic-Basophils-CD14CD16-Osteoblast0
C144-CD4-tonsil-NK-appendix-CD8-splenic-mycosis0
C145-neuroblastoma-peripheral-neuroectodermal-neuroepithelioma-carcinoid-adult-extraskeletal0
C146-lymphangiectasia-lymphoma-gall-lymph-tonsil-gastric-transitionalcell0
C147-Neutrophils-Eosinophils-CD4-CD14-CD8-Natural-Peripheral0
C148-kidney-small-epididymis-pancreas-serous-duodenum-temporal0
C149-occipital-medial-brain-amygdala-parietal-cerebral-cerebellum0
C15-anaplastic-small-skeletal-neuroblastoma-parietal-temporal-tongue0
C150-merkel-carcinoid-nonsmall-gastrointestinal-argyrophil-pineal-small0
C151-CD14-Natural-Basophils-CD8-Eosinophils-CD4-Mast0
C152-peripheral-neuroectodermal-neuroepithelioma-neuroblastoma-testicular-carcinoid-lung0
C153-rhabdomyosarcoma-liposarcoma-pancreatic-somatostatinoma-Reticulocytes-lymphoma-testicular0
C154-adenocarcinoma-Mesenchymal-Cardiac-small-sacrococcigeal-Smooth-Prostate0
C155-pituitary-placenta-nonsmall-cervical-smallcell-choriocarcinoma-epitheloid0
C156-plasma-splenic-hereditary-B-large-xeroderma-b0
C157-testicular-H9-testis-iPS-teratocarcinoma-colon-trachea0
C158-adrenal-gastric-temporal-parietal-duodenum-caudate-putamen0
C159-choriocarcinoma-pancreatic-placenta-chorionic-testicular-bronchioalveolar-seminal0
C16-medial-amygdala-occipital-parietal-olfactory-putamen-brain0
C160-medulla-Hepatocyte-retina-corpus-liver-pineal-cerebral0
C161-mesothelioma-Mesothelial-acute-mesenchymal-extraskeletal-renal-placenta0
C162-spinal-locus-medulla-substantia-thalamus-globus-diencephalon0
C163-Skeletal-skeletal-Pericytes-Hepatic-rhabdomyosarcoma-throat-mesenchymal0
C164-signet-corpus-optic-mucinous-substantia-salivary-choriocarcinoma0
C165-epithelioid-Adipocyte-mesothelioma-myxofibrosarcoma-lung-gastric-Mesothelial0
C166-Macrophage-Monocytederived-Dendritic-adipose-lymph-CD14-lung0
C167-Basophils-Mast-Eosinophils-Neutrophils-Peripheral-Whole-CD40
C168-Mast-CD14-immature-Basophils-Eosinophils-CD34-Peripheral0
C169-hereditary-adult-gall-lymphangiectasia-chronic-b-choriocarcinoma0
C17-Mast-CD14-Monocytederived-Lymphatic-Smooth-mesenchymal-Macrophage0
C170-epitheloid-cervical-Hep2-keratoacanthoma-adult-neuroblastoma-signet0
C171-merkel-neuroblastoma-pineal-retinoblastoma-carcinoid-small-eye0
C172-chorionic-skeletal-tongue-amniotic-liver-gastrointestinal-Pericytes0
C173-Adipocyte-mature-skin-left-Hepatocyte-Osteoblast-adipose0
C174-CD14-Neutrophils-Smooth-mesothelioma-embryonic-Monocytederived-Eosinophils0
C175-Eosinophils-Neutrophils-CD4-Basophils-CD19-CD8-Natural0
C176-Eosinophils-Neutrophils-Mast-CD14-CD4-Basophils-CD190.0227
C177-melanoma-Melanocyte-mesenchymal-retina-Mallassezderived-Gingival-squamous0
C178-spleen-liver-Hepatocyte-b-lymph-vein-thymus0
C179-CD19-Peripheral-lymphoma-blood-lymph-spleen-tonsil0
C18-CD4-CD8-thymus-Whole-Peripheral-Natural-blood0
C180-skeletal-heart-Hepatocyte-acute-occipital-hippocampus-middle0.719
C181-liposarcoma-somatostatinoma-neuroblastoma-mesothelioma-nonsmall-small-Alveolar0
C182-renal-mature-mesothelioma-lung-Mammary-Adipocyte-acute0
C183-acute-non-CD34-diffuse-CD133-myeloma-Burkitt0
C184-somatostatinoma-smallcell-nonsmall-small-gastrointestinal-pineal-thyroid0
C185-small-adrenal-gastric-Mesenchymal-acute-HES3GFP-testis0
C186-squamous-papillotubular-large-Tracheal-oral-Small-epidermoid0
C187-migratory-immature-Dendritic-CD19-CD14-Monocytederived-Macrophage0
C188-left-heart-tongue-skeletal-Skeletal-diaphragm-throat0
C189-b-splenic-tonsil-CD19-lymph-appendix-spleen0
C19-embryonic-testis-cord-chronic-CD14-NK-mesothelioma0
C190-colon-small-rectum-duodenum-appendix-temporal-oral0
C191-leiomyoblastoma-Mast-parietal-acute-bone-neuroepithelioma-embryonic0
C192-Neutrophils-CD14-Peripheral-Eosinophils-CD8-Natural-CD40
C193-Mesenchymal-Adipocyte-mature-Cardiac-heart-CD14CD16-CD140
C194-MCF7-breast-prostate-Intestinal-diffuse-Wilms-Alveolar0
C195-Small-Gingival-Bronchial-Smooth-mesenchymal-Urothelial-Tracheal0
C196-testicular-iPS-H9-teratocarcinoma-HES3GFP-choriocarcinoma-endometrial0
C197-tongue-esophagus-tonsil-salivary-cervix-nasal-Gingival0
C198-Mesenchymal-Hair-Hepatic-Fibroblast-Smooth-tenocyte-Pericytes0
C199-glioblastoma-B-osteosarcoma-Fibroblast-heart-rhabdomyosarcoma-myxofibrosarcoma0
C2-Eosinophils-Neutrophils-CD14-Whole-Basophils-Peripheral-Mast0
C20-heart-left-skeletal-diaphragm-tongue-umbilical-throat0
C200-seminal-Cardiac-Smooth-Hair-submaxillary-Neutrophils-mixed0.488
C201-colon-small-adenocarcinoma-duodenum-temporal-signet-gall0
C202-salivary-skin-penis-tongue-uterus-cervical-immature0
C203-acute-NK-chronic-CD133-lymphoma-immature-Dendritic0
C204-Smooth-nasal-CD4-CD19-CD8-CD14-CD340
C205-mycosis-cord-hairy-xeroderma-CD4-B-b0
C206-melanoma-somatostatinoma-nonsmall-small-neuroblastoma-smallcell-pituitary0
C207-Corneal-Keratinocyte-Esophageal-Mammary-Bronchial-Urothelial-Sebocyte0
C208-skin-amniotic-papillotubular-salivary-umbilical-Alveolar-serous0
C209-acute-myelodysplastic-CD34-granulocyte-CD133-liver-spleen0
C21-cord-mycosis-hairy-xeroderma-adult-CD4-anaplastic0
C210-Burkitt-lymphoma-appendix-acute-diffuse-CD19-tonsil0
C211-small-Hepatocyte-liver-colon-temporal-duodenum-kidney0.596
C212-chronic-acute-Whole-Reticulocytes-leukemia-blood-CD340
C213-CD14-Natural-CD8-CD4-Basophils-Eosinophils-Peripheral0
C214-Neurons-Neural-duodenum-temporal-occipital-parietal-brain0
C215-chronic-acute-peripheral-Hepatocyte-osteosarcoma-NK-immature0
C216-osteosarcoma-Smooth-Mesenchymal-large-neuroectodermal-acute-CD340
C217-carcinoid-neuroectodermal-mature-mesodermal-colon-acute-occipital0
C218-tonsil-lymph-CD19-spleen-colon-appendix-salivary0.297
C219-nasal-Basophils-amniotic-Melanocyte-CD14-Osteoblast-duodenum0
C22-CD4-CD8-Natural-Basophils-CD14-Peripheral-CD190
C220-Adipocyte-mature-left-breast-skin-liver-adipose0
C221-alveolar-Osteoblast-Myoblast-mesenchymal-liposarcoma-Smooth-hepatocellular0
C222-Melanocyte-Tracheal-Neutrophils-seminal-Smooth-Hair-Chondrocyte0.603
C223-Chondrocyte-basal-renal-Fibroblast-Smooth-spindle-Synoviocyte0
C224-clear-serous-pleomorphic-choriocarcinoma-mesothelioma-amniotic-renal0
C225-ductal-alveolar-giant-prostate-salivary-squamous-Tracheal0
C226-Corneal-Keratinocyte-Esophageal-Urothelial-Mammary-Bronchial-Tracheal0
C227-chorionic-amniotic-Mesenchymal-Placental-gastric-diaphragm-tongue0
C228-colon-Intestinal-Prostate-hepatoblastoma-hepatocellular-testis-adult0
C229-Mesenchymal-CD4-Melanocyte-acute-skeletal-left-heart0
C23-CD4-CD8-Natural-Peripheral-Basophils-CD19-CD140
C230-aorta-normal-heart-penis-osteosarcoma-basal-lung0
C231-Mesothelial-mesenchymal-mesothelioma-Fibroblast-Preadipocyte-leiomyoma-mycosis0
C232-teratocarcinoma-HES3GFP-H9-iPS-testicular-neuroblastoma-cerebellum0
C233-uterus-cervix-ovary-epididymis-colon-rectum-MCF70
C234-oral-epidermoid-malignant-cervical-ductal-lung-keratoacanthoma0
C235-Intestinal-Prostate-liver-colon-small-kidney-pancreas0
C236-CD14-Neutrophils-Monocytederived-renal-Eosinophils-testis-mesothelioma0
C237-acute-breast-testicular-hepatoblastoma-chronic-argyrophil-Bronchial0
C238-stomach-gall-breast-duodenum-temporal-MCF7-smallcell0
C239-CD4-lymphangiectasia-CD8-NK-mycosis-Renal-hairy0
C24-pineal-eye-retina-retinoblastoma-medulloblastoma-small-cerebral0
C240-Adipocyte-Preadipocyte-Osteoblast-Chondrocyte-tenocyte-Synoviocyte-mesenchymal0
C241-Reticulocytes-chronic-Tracheal-Hodgkin-Endothelial-Hair-thymus-0.649
C242-acute-Chondrocyte-myelodysplastic-granulocyte-biphenotypic-Fibroblast-stomach0
C243-Chondrocyte-trachea-Synoviocyte-mesodermal-renal-Fibroblast-Ewing0
C244-CD14-Monocytederived-Hepatocyte-heart-Neutrophils-acute-Macrophage0
C245-prostate-penis-salivary-esophagus-kidney-Neutrophils-Pancreatic0
C246-Neutrophils-Eosinophils-Whole-CD14-CD14CD16-Basophils-migratory0.0202
C247-pons-locus-medulla-spinal-paracentral-medial-occipital0
C248-iPS-Aortic-Hep2-amygdala-acute-medial-Myoblast0
C249-nonsmall-small-smallcell-occipital-somatostatinoma-maxillary-medial0
C25-small-colon-temporal-duodenum-liver-Hepatocyte-gall0
C250-Mast-Neutrophils-CD14-Eosinophils-CD8-Peripheral-CD40.25
C251-gall-tonsil-trachea-CD14-salivary-throat-tongue0
C252-hepatic-Olfactory-sacrococcigeal-leiomyoma-normal-Synoviocyte-glioblastoma0
C253-spleen-rhabdomyosarcoma-Hepatocyte-small-uterus-liver-rectum0
C254-prostate-rhabdomyosarcoma-seminal-Fibroblast-transitionalcell-Smooth-Iris0
C255-Wilms-leiomyoblastoma-kidney-adrenal-MCF7-epithelioid-Mast0
C256-occipital-caudate-amygdala-medial-thalamus-hippocampus-medulla0
C257-pineal-insula-frontal-occipital-temporal-medial-paracentral0
C258-hepatoblastoma-hepatocellular-signet-colon-Intestinal-Prostate-gastric0
C259-Preadipocyte-Adipocyte-Fibroblast-Chondrocyte-tenocyte-normal-Ewing0
C26-Eosinophils-Neutrophils-CD14-CD14CD16-Basophils-Monocytederived-Whole0
C260-acute-chronic-Natural-NK-Basophils-biphenotypic-blood0
C261-locus-medial-parietal-pons-diencephalon-olfactory-spinal0
C262-breast-MCF7-skeletal-Reticulocytes-mucinous-hepatoblastoma-Wilms0
C263-cervical-keratoacanthoma-tongue-skin-esophagus-throat-tonsil0
C264-giant-keratoacanthoma-colon-fibrosarcoma-HES3GFP-Hep2-acute0
C265-CD4-Eosinophils-CD14-Natural-CD19-Basophils-CD80
C266-acute-chronic-leukemia-small-choriocarcinoma-hepatoma-Mast0
C267-pancreatic-placenta-choriocarcinoma-testicular-teratocarcinoma-chorionic-clear0
C268-Mallassezderived-Urothelial-Gingival-Small-Bronchial-Tracheal-Prostate0
C269-Basophils-Mast-Eosinophils-mature-CD14-chorionic-CD40
C27-pancreas-temporal-duodenum-salivary-ductus-umbilical-lung0
C270-CD4-Fibroblast-acute-iPS-Aortic-CD34-Smooth-0.0663
C271-pineal-spinal-locus-globus-medulla-thalamus-cerebellum0
C272-CD19-CD4-CD8-Whole-Peripheral-lymph-tonsil0
C273-Neutrophils-CD14-Eosinophils-Monocytederived-CD4-Natural-Mast0
C274-CD14-Mast-immature-Basophils-mature-vagina-Hepatocyte0
C275-pons-medulla-cerebellum-locus-thalamus-diencephalon-spinal0
C276-mesothelioma-kidney-renal-small-clear-cerebellum-Renal0
C277-mesothelioma-epithelioid-thyroid-extraskeletal-alveolar-glioblastoma-adenocarcinoma0
C278-amygdala-hippocampus-insula-medial-putamen-temporal-olfactory0
C279-parietal-cerebellum-occipital-temporal-middle-duodenum-medial0
C28-thymus-acute-vein-Hodgkin-chronic-throat-Dendritic0
C280-Mast-Natural-CD19-CD8-Eosinophils-CD34-CD40
C281-Hodgkin-Reticulocytes-chronic-NK-acute-retinoblastoma-small-0.517
C282-acute-B-tonsil-CD19-submaxillary-lymph-throat0
C283-tenocyte-Chondrocyte-mesenchymal-Macrophage-pleomorphic-Synoviocyte-cholangiocellular0.596
C284-parietal-occipital-medial-temporal-olfactory-locus-hippocampus0
C285-cervical-Hep2-small-colon-temporal-duodenum-bronchogenic0
C286-cerebellum-occipital-optic-parietal-globus-caudate-medial0
C287-Hepatocyte-Chondrocyte-Adipocyte-Synoviocyte-liver-tenocyte-mesenchymal0.897
C288-Chondrocyte-Renal-Pericytes-Fibroblast-aorta-Smooth-Meningeal0
C289-chorionic-skeletal-heart-Mast-amniotic-granulosa-left0
C29-mature-adipose-Adipocyte-breast-Lymphatic-vein-heart0
C290-Eosinophils-CD14-Basophils-Mast-CD4-CD8-immature0
C291-spinal-substantia-retina-medulla-tongue-skeletal-trachea0
C292-Mesenchymal-skin-umbilical-Adipocyte-mesenchymal-Chondrocyte-skeletal0
C293-CD14-CD14CD16-Basophils-Peripheral-immature-Eosinophils-CD340
C294-CD14-Macrophage-Monocytederived-CD14CD16-Neutrophils-Basophils-Peripheral0
C295-Fibroblast-Smooth-Myoblast-Chondrocyte-hepatic-Synoviocyte-Preadipocyte0
C296-gall-small-mesothelioma-acute-bronchioalveolar-epidermoid-mixed0
C297-Eosinophils-CD4-Basophils-Natural-Neutrophils-CD8-Peripheral0
C298-small-optic-substantia-thalamus-diencephalon-globus-occipital0
C299-CD14CD16-Eosinophils-Neutrophils-CD14-Whole-Basophils-blood0
C3-occipital-temporal-insula-medial-postcentral-frontal-amygdala0
C30-thyroid-throat-mesothelioma-mucinous-trachea-chorionic-mesenchymal0
C300-CD4-CD8-NK-Natural-blood-mycosis-Basophils0
C301-Smooth-mesenchymal-Endothelial-Hepatic-basal-hepatic-chorionic0.297
C302-acute-peripheral-Neutrophils-NK-myelodysplastic-CD34-carcinoid0
C303-CD14-Basophils-Peripheral-Eosinophils-CD14CD16-Neutrophils-Whole0
C305-heart-skeletal-smooth-left-bladder-penis-esophagus0
C31-skeletal-tongue-diaphragm-throat-penis-skin-trachea0
C32-middle-occipital-parietal-hippocampus-amygdala-medial-olfactory0
C33-Reticulocytes-liver-Whole-blood-chronic-acute-spleen0
C34-placenta-chorionic-choriocarcinoma-mesothelioma-Wilms-Smooth-bile0
C35-caudate-putamen-diencephalon-nucleus-globus-thalamus-insula0
C36-B-b-splenic-plasma-xeroderma-adrenal-Burkitt0
C37-salivary-submaxillary-parotid-seminal-tongue-ductus-trachea0
C38-extraskeletal-rhabdomyosarcoma-adrenal-rectal-mesothelioma-lung-Wilms0
C39-epididymis-ductus-seminal-testis-acute-thyroid-CD1330
C4-optic-corpus-substantia-medulla-spinal-thalamus-globus0
C40-eye-retina-Lens-pineal-tongue-retinoblastoma-small0
C41-retina-eye-medulla-Retinal-medulloblastoma-kidney-pineal0
C42-small-lung-maxillary-pharyngeal-Mesenchymal-Wilms-colon0
C43-ductus-seminal-duodenum-temporal-gall-prostate-bladder0
C44-Dendritic-CD19-CD133-granulocyte-acute-thymus-immature0
C45-testicular-choriocarcinoma-H9-teratocarcinoma-Wilms-pancreatic-iPS0
C46-acute-Hodgkin-thymus-CD8-chronic-CD4-merkel0
C47-CD19-Burkitt-acute-xeroderma-tonsil-lymphoma-appendix0
C48-smooth-bladder-esophagus-colon-penis-aorta-uterus0
C49-H9-iPS-testicular-HES3GFP-teratocarcinoma-hepatoblastoma-choriocarcinoma0
C5-Hepatocyte-liver-hepatocellular-Intestinal-kidney-small-pancreas0.993
C50-chorionic-placenta-amniotic-migratory-smallcell-chronic-choriocarcinoma0
C51-kidney-mesothelioma-renal-signet-gall-lung-pancreas0
C52-adult-NK-chronic-cord-testis-embryonic-myeloma0
C53-medulloblastoma-pineal-retinoblastoma-small-retina-eye-pituitary0
C54-Dendritic-Macrophage-Monocytederived-CD14-leiomyoma-adipose-immature0
C55-hepatocellular-Intestinal-liver-Prostate-fibrosarcoma-Hepatocyte-hepatoblastoma0
C56-heart-left-umbilical-skeletal-penis-diaphragm-tongue0
C57-Neutrophils-Eosinophils-Whole-CD4-CD8-CD19-Natural0
C58-Melanocyte-melanoma-retina-Retinal-eye-migratory-H90
C59-Smooth-Fibroblast-Mesenchymal-tenocyte-Ewing-skin-hepatic0
C6-CD14-Eosinophils-Basophils-Peripheral-CD34-Natural-immature0
C60-esophagus-tonsil-throat-tongue-uterus-cervix-cervical0
C61-migratory-Dendritic-immature-Macrophage-xeroderma-cord-b0
C62-Burkitt-tonsil-CD19-submaxillary-spleen-salivary-lymph0
C63-neuroectodermal-neuroblastoma-carcinoid-peripheral-chronic-neuroepithelioma-acute0
C64-Mast-chronic-acute-immature-chorionic-Basophils-Dendritic0
C65-CD14-Eosinophils-Monocytederived-Basophils-immature-Macrophage-Neutrophils0
C66-cerebellum-middle-occipital-parietal-medial-amygdala-hippocampus0
C67-CD14-Monocytederived-Macrophage-dura-Dendritic-spleen-lung0
C68-amniotic-chorionic-Placental-salivary-placenta-tongue-mesothelioma0
C69-anaplastic-CD14-cord-hairy-mycosis-adult-NK0
C7-CD14-Eosinophils-Neutrophils-Smooth-Basophils-Macrophage-Mast0
C70-parotid-submaxillary-salivary-throat-trachea-aorta-tongue0
C71-Monocytederived-Macrophage-CD14-Dendritic-Osteoblast-leiomyoma-Prostate0
C72-skeletal-tongue-throat-heart-diaphragm-penis-left0
C73-pineal-eye-retina-caudate-cerebellum-left-parietal0
C74-splenic-B-b-plasma-xeroderma-lymphoma-hairy0
C75-Eosinophils-Natural-CD8-Basophils-CD14-CD4-Peripheral0
C76-argyrophil-gastrointestinal-temporal-duodenum-neuroblastoma-merkel-smallcell0
C77-Saos2-osteosarcoma-Neutrophils-Natural-Chondrocyte-Basophils-CD80
C78-lymphoma-plasma-tonsil-appendix-lymph-seminal-trachea0
C79-chorionic-Chondrocyte-Cardiac-Smooth-Fibroblast-Preadipocyte-Mesenchymal0.366
C8-Natural-CD8-Basophils-CD4-CD14-Peripheral-CD340
C80-immature-migratory-CD14-Dendritic-splenic-cord-Mast0
C81-trachea-salivary-throat-aorta-eye-submaxillary-parotid0
C82-Basophils-CD14-Eosinophils-Natural-Peripheral-immature-CD340
C83-choriocarcinoma-pancreatic-placenta-chorionic-HES3GFP-testicular-amniotic0
C84-choriocarcinoma-pancreatic-Wilms-Mallassezderived-thymus-salivary-colon0
C85-neuroblastoma-carcinoid-retinoblastoma-small-pineal-rhabdomyosarcoma-medulloblastoma0
C86-colon-carcinoid-small-neuroectodermal-giant-large-neuroepithelioma0
C87-retinoblastoma-left-nonsmall-heart-small-diaphragm-bronchogenic0
C88-Melanocyte-melanoma-Macrophage-Mesenchymal-migratory-Dendritic-Monocytederived0
C89-small-retinoblastoma-medulloblastoma-iPS-acantholytic-eye-bronchogenic0
C9-skeletal-diaphragm-tongue-throat-penis-heart-left0
C90-neuroectodermal-peripheral-neuroepithelioma-neuroblastoma-carcinoid-parietal-putamen0
C91-Fibroblast-Smooth-mesenchymal-Mesothelial-Small-Preadipocyte-Hair0
C92-CD14CD16-CD14-Eosinophils-Basophils-Neutrophils-Macrophage-Whole0
C93-chronic-acute-leukemia-acantholytic-medulloblastoma-testis-papillotubular0
C94-smallcell-adrenal-lung-nonsmall-small-somatostatinoma-teratocarcinoma0
C95-lung-aorta-trachea-penis-Alveolar-throat-endometrioid0
C96-non-acute-tonsil-spleen-Burkitt-lymphoma-appendix0
C97-small-smallcell-gastrointestinal-argyrophil-putamen-duodenum-brain0
C98-CD8-Natural-Basophils-blood-CD4-Peripheral-Whole0
C99-hairy-mycosis-submaxillary-salivary-cord-kidney-parotid0



Repeat families with enriched expression in this sample<b>Summary:</b>Ranked list of repeat family expression in this sample relative tothe median expression in the FANTOM5 collection is shown. Value is log10transformed.<br><b>Analyst:</b>NA<br><br>link to dataset.<br>data



TFBS(DNA)motifs over-represented in proximal region of promoters active in this sample

JASPAR motifs<b>Summary:</b>Association of JASPAR motif to the promoter expression in thissample. Pearson's correlation between the number of TFBSs estimated byusing the position-weight matrix for each promoter and its expression isexpressed as Z-score by taking the ones based on random position-weightmatrix, and the tail probability of the normal distribution correspondingto the Z-score is taken as the resulting P-value. Lower P-value indicatesmore (non-random) association of the motif to promoter expression<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data

library id: CNhs12349

Jaspar motifP-value
MA0002.20.444
MA0003.10.0103
MA0004.10.554
MA0006.10.254
MA0007.10.0627
MA0009.10.786
MA0014.10.307
MA0017.12.96656e-15
MA0018.21.63658e-4
MA0019.10.945
MA0024.10.013
MA0025.10.564
MA0027.10.968
MA0028.10.0934
MA0029.10.363
MA0030.10.216
MA0031.10.102
MA0035.20.0239
MA0038.10.107
MA0039.20.629
MA0040.10.374
MA0041.10.336
MA0042.10.676
MA0043.10.0144
MA0046.11.23756e-61
MA0047.23.19839e-5
MA0048.10.817
MA0050.10.875
MA0051.10.824
MA0052.10.52
MA0055.10.788
MA0057.10.171
MA0058.10.453
MA0059.10.0628
MA0060.12.18495e-5
MA0061.10.876
MA0062.20.0014
MA0065.23.12633e-9
MA0066.10.0283
MA0067.10.0131
MA0068.10.0399
MA0069.10.296
MA0070.10.382
MA0071.10.0512
MA0072.10.0838
MA0073.10.646
MA0074.10.261
MA0076.10.0214
MA0077.10.431
MA0078.10.804
MA0079.20.413
MA0080.22.89897e-4
MA0081.10.122
MA0083.10.0788
MA0084.10.608
MA0087.10.69
MA0088.10.371
MA0090.10.764
MA0091.10.882
MA0092.10.407
MA0093.10.548
MA0099.24.5346e-6
MA0100.10.374
MA0101.10.217
MA0102.20.745
MA0103.10.0043
MA0104.20.448
MA0105.10.154
MA0106.10.297
MA0107.10.203
MA0108.20.276
MA0111.10.745
MA0112.24.53556e-7
MA0113.10.219
MA0114.12.64876e-13
MA0115.13.05902e-7
MA0116.14.88315e-4
MA0117.10.645
MA0119.10.0473
MA0122.10.722
MA0124.10.853
MA0125.10.855
MA0131.10.306
MA0135.10.855
MA0136.11.65999e-5
MA0137.20.00711
MA0138.20.0317
MA0139.10.144
MA0140.10.0866
MA0141.14.92118e-5
MA0142.10.00717
MA0143.10.103
MA0144.10.00749
MA0145.10.306
MA0146.10.0583
MA0147.10.351
MA0148.16.53285e-4
MA0149.10.197
MA0150.10.691
MA0152.14.31821e-5
MA0153.11.63567e-42
MA0154.10.0159
MA0155.10.343
MA0156.10.0149
MA0157.10.0529
MA0159.14.5834e-4
MA0160.10.0122
MA0162.10.357
MA0163.14.41973e-4
MA0164.10.666
MA0258.15.04605e-4
MA0259.10.79



FANTOM5 phase1 novel unique motifs<b>Summary:</b>Association of the 169 novel and unique motifs discovered in FANTOM5 phase1 in this sample. Among the de-novo motifs discovered by DMF, HOMER,ChIPMunk, and ScanAll, only novel motifs are selected after comparison with known motif sets, and their clustering based on MACRO-APE resulted in169 novel and unique motifs. Their association to the promoter expression is evaluated in the same way to the JASPAR motif above<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data

library id: CNhs12349

Novel motifP-value
10.0426
100.204
1000.228
1010.998
1020.265
1030.147
1040.77
1050.377
1060.00558
1070.0172
1080.392
1090.185
110.167
1100.237
1110.179
1120.0119
1130.229
1140.023
1150.726
1160.237
1170.36
1180.375
1190.0182
120.503
1200.96
1210.159
1220.527
1230.764
1240.0444
1250.298
1260.218
1270.72
1280.0493
1290.202
130.106
1300.0686
1310.857
1320.447
1330.688
1340.737
1350.393
1360.748
1370.765
1380.201
1390.316
140.8
1400.221
1410.0697
1420.202
1430.359
1440.749
1450.129
1460.161
1470.655
1480.0244
1490.0612
150.0987
1500.479
1510.204
1520.258
1530.818
1540.537
1550.0602
1560.942
1570.892
1580.883
1590.43
160.256
1600.208
1610.627
1620.41
1630.72
1640.244
1650.0301
1660.808
1670.111
1680.742
1694.91825e-4
170.232
180.243
190.0732
20.529
200.998
210.627
220.132
230.109
240.873
250.948
260.0285
270.42
280.866
290.42
30.219
300.948
310.352
320.399
330.346
340.568
350.0824
360.0536
370.216
380.277
390.329
40.301
400.0712
410.34
420.541
430.123
441.71914e-5
450.474
460.0997
470.332
480.262
490.123
50.225
500.458
510.618
520.105
530.963
540.377
550.706
560.621
570.486
580.339
590.0898
60.789
600.0368
610.412
620.177
630.111
640.432
650.0964
660.463
670.237
680.644
690.533
70.113
700.0767
710.0665
720.595
730.164
740.819
750.133
760.943
770.0536
780.0707
790.336
80.0478
800.673
810.256
820.166
830.608
840.301
850.0203
860.272
870.924
880.509
890.0869
90.964
900.0628
910.184
920.103
930.417
940.841
950.616
960.189
970.57
980.403
990.0548



de novo motifs identified by HOMER in promoters active in this sample<b>Summary:</b>The result of HOMER in this sample is shown.<br><b>Analyst:</b>NA <br> library id: CNhs12349


FANTOM5 (FF) ontology

Direct parent terms


Ancestor terms (non development)<b>Summary:</b>Connected ontology terms with is_a, part_of or located_in relationship <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source data<br>data

CL: Cell type
0000000 (cell), 0000000 (cell)
0000003 (native cell)
0000548 (animal cell)
0000066 (epithelial cell)
0002371 (somatic cell)
0000181 (metabolising cell)
0000417 (endopolyploid cell)
0000668 (parenchymal cell)
0000412 (polyploid cell)
0000255 (eukaryotic cell)
0000182 (hepatocyte)

UBERON: Anatomy
0000468 (multi-cellular organism)
0002107 (liver)
0002100 (trunk)
0001007 (digestive system)
0004119 (endoderm-derived structure)
0000062 (organ)
0000475 (organism subdivision)
0000061 (anatomical structure)
0000465 (material anatomical entity)
0000467 (anatomical system)
0001062 (anatomical entity)
0000480 (anatomical group)
0009569 (subdivision of trunk)
0002368 (endocrine gland)
0005177 (trunk region element)
0002365 (exocrine gland)
0005172 (abdomen element)
0006925 (digestive gland)
0002530 (gland)
0010317 (germ layer / neural crest derived structure)
0005173 (abdominal segment element)
0002417 (abdominal segment of trunk)
0000949 (endocrine system)
0002330 (exocrine system)
0000916 (abdomen)
0002423 (hepatobiliary system)

FF: FANTOM5
0000102 (sample by type)
0000210 (human sample)
0000002 (in vivo cell sample)
0000101 (sample by species)
0000001 (sample)
0000078 (human hepatocyte sample)

Ancestor terms (development)<b>Summary:</b>Connected ontology terms with develops_from, derives_from or preceded_by relationship <br><b>Analyst:</b> Hideya Kawaji <br><br>link to source data<br>data
CL:0000134 (mesenchymal cell)
CL:0000223 (endodermal cell)

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