FF:10831-111D3: Difference between revisions
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{{f5samples | {{f5samples | ||
|DRA_sample_Accession=CAGE@SAMD00005714 | |||
|accession_numbers=CAGE;DRX007808;DRR008680;DRZ000105;DRZ001490;DRZ011455;DRZ012840 | |||
|ancestors_in_anatomy_facet= | |ancestors_in_anatomy_facet= | ||
|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000988,CL:0000548,CL:0000763,CL:0002371,CL:0000255 | |ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000988,CL:0000548,CL:0000763,CL:0002371,CL:0000255 | ||
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|created_by= | |created_by= | ||
|creation_date= | |creation_date= | ||
|datafreeze_phase= | |data_phase=2 | ||
|datafreeze_phase=2 | |||
|def= | |def= | ||
|expression_enrichment_score=chr20:31350184..31350200,+!p1@DNMT3B!1.91!163.71!DNMT3B;;chr21:39870339..39870443,-!p1@ERG!1.89!75.84!ERG;;chr7:27205136..27205164,-!p1@HOXA9!1.88!74.83!HOXA9;;chr20:62680984..62680999,-!p1@SOX18!1.78!77.54!SOX18;;chr12:54694758..54694805,-!p1@NFE2!1.76!67.72!NFE2;;chr1:25291475..25291511,-!p2@RUNX3!1.74!54.17!RUNX3;;chr11:47400078..47400106,-!p1@SPI1!1.66!44.35!SPI1;;chr2:16080659..16080685,+!p1@MYCN!1.64!42.32!MYCN;;chr19:13213511..13213545,-!p2@LYL1!1.62!43.68!LYL1;;chr12:54694807..54694832,-!p3@NFE2!1.61!40.12!NFE2;;chr2:68592406..68592424,+!p1@PLEK!1.60!38.43!PLEK;;chr9:135854091..135854159,+!p1@GFI1B!1.55!34.70!GFI1B;;chr6:135502501..135502546,+!p1@MYB!1.54!39.78!MYB;;chr19:33793430..33793447,-!p1@CEBPA!1.52!131.71!CEBPA;;chr12:54778471..54778528,-!p1@ZNF385A!1.48!29.29!ZNF385A;;chr17:40441354..40441410,+!p2@STAT5A!1.47!28.44!STAT5A;;chr19:13213662..13213686,-!p1@LYL1!1.45!39.95!LYL1;;chr2:16082155..16082169,+!p3@MYCN!1.45!27.09!MYCN;;chr12:54785074..54785122,-!p2@ZNF385A!1.44!39.95!ZNF385A;;chr5:88178983..88179012,-!p1@MEF2C!1.41!184.36!MEF2C;;chr7:50344289..50344323,+!p1@IKZF1!1.38!22.85!IKZF1;;chr12:96588368..96588394,+!p3@ELK3!1.35!56.20!ELK3;;chr11:47399996..47400014,-!p4@SPI1!1.35!21.50!SPI1;;chr7:115670804..115670825,-!p1@TFEC!1.35!21.16!TFEC;;chr7:27213893..27213954,-!p1@HOXA10!1.33!20.32!HOXA10;;chr9:20382446..20382493,-!p4@MLLT3!1.33!20.15!MLLT3;;chr12:54785054..54785072,-!p4@ZNF385A!1.32!22.69!ZNF385A;;chr7:27205106..27205134,-!p2@HOXA9!1.32!19.81!HOXA9;;chrX:2418949..2419024,-!p1@DHRSX,p1@ZBED1!1.30!18.96!ZBED1;;chr4:57522598..57522664,-!p3@HOPX!1.30!18.96!HOPX;;chr11:47399947..47399961,-!p3@SPI1!1.30!18.79!SPI1;;chr6:15401104..15401166,+!p5@JARID2!1.28!17.94!JARID2;;chr4:57522513..57522548,-!p4@HOPX!1.27!17.78!HOPX;;chr8:60031619..60031676,-!p1@TOX!1.24!35.38!TOX;;chr6:135502408..135502459,+!p2@MYB!1.24!18.96!MYB;;chr7:27192185..27192209,-!p1@HOXA3!1.24!16.42!HOXA3;;chr7:137620650..137620677,-!p3@CREB3L2!1.22!15.74!CREB3L2;;chr18:77155922..77155939,+!p1@NFATC1!1.20!39.95!NFATC1;;chr20:50159198..50159299,-!p1@NFATC2!1.16!19.81!NFATC2;;chr3:128206762..128206781,-!p2@GATA2!1.15!80.92!GATA2;;chr14:75988771..75988826,+!p1@BATF!1.15!17.44!BATF;;chr3:18486354..18486377,-!p2@SATB1!1.15!16.42!SATB1;;chr2:68592394..68592405,+!p2@PLEK!1.13!12.36!PLEK;;chr11:47400062..47400077,-!p2@SPI1!1.13!12.36!SPI1;;chr2:172949484..172949522,+!p1@DLX1!1.09!11.34!DLX1;;chr18:22932080..22932170,-!p1@ZNF521!1.06!44.52!ZNF521;;chr1:25256756..25256774,-!p1@RUNX3!1.06!19.64!RUNX3;;chr3:128212033..128212051,-!p1@GATA2!1.06!10.50!GATA2;;chr8:60031563..60031574,-!p7@TOX!1.06!10.50!TOX;;chr10:94449703..94449718,+!p1@HHEX!1.05!40.29!HHEX;;chr11:47279504..47279563,+!p1@NR1H3!1.05!23.36!NR1H3;;chr3:141747459..141747475,-!p1@TFDP2!1.04!84.98!TFDP2;;chr9:117150254..117150271,-!p1@AKNA!1.03!27.26!AKNA;;chr19:12203100..12203132,+!p1@ZNF788!1.03!19.81!ZNF788;;chr12:11802547..11802560,+!p5@ETV6!1.02!13.20!ETV6;;chr3:168865194..168865245,-!p3@MECOM!1.02!12.36!MECOM;;chr16:88752861..88752884,-!p2@SNAI3!1.02!9.48!SNAI3;;chr2:25475120..25475176,-!p2@DNMT3A!1.01!12.70!DNMT3A;;chr7:50348268..50348366,+!p4@IKZF1!1.01!9.14!IKZF1;;chr5:88179017..88179046,-!p2@MEF2C!1.00!36.74!MEF2C;;chr2:66662281..66662308,+!p1@MEIS1!1.00!31.49!MEIS1;;chr1:3569072..3569093,+!p1@TP73!1.00!8.97!TP73;;chr8:60031534..60031553,-!p8@TOX!0.97!8.30!TOX;;chr2:60780607..60780624,-!p2@BCL11A!0.96!25.73!BCL11A;;chr17:41623692..41623715,-!p1@ETV4!0.95!35.21!ETV4;;chr11:47400032..47400043,-!p5@SPI1!0.95!7.96!SPI1;;chr10:94449675..94449694,+!p2@HHEX!0.94!21.16!HHEX;;chr4:57522674..57522699,-!p5@HOPX!0.94!7.79!HOPX;;chr1:92951607..92951661,-!p1@GFI1!0.94!7.62!GFI1;;chr7:137620684..137620711,-!p4@CREB3L2!0.94!7.62!CREB3L2;;chr19:22817119..22817145,+!p1@ZNF492!0.93!12.70!ZNF492;;chr6:135502472..135502489,+!p3@MYB!0.93!7.45!MYB;;chr3:141747441..141747452,-!p4@TFDP2!0.92!10.50!TFDP2;;chr3:168865250..168865272,-!p5@MECOM!0.92!7.28!MECOM;;chr7:27224842..27224872,-!p1@HOXA11!0.92!7.28!HOXA11;;chr1:47691303..47691319,-!p5@TAL1!0.91!7.11!TAL1;;chr1:221052776..221052799,+!p1@HLX!0.90!12.87!HLX;;chr19:13213555..13213568,-!p5@LYL1!0.90!6.94!LYL1;;chr7:50344251..50344288,+!p3@IKZF1!0.90!6.94!IKZF1;;chr5:321810..321877,+!p1@AHRR!0.89!22.69!AHRR;;chr2:16081912..16081931,+!p2@MYCN!0.89!6.77!MYCN;;chr7:149470641..149470694,-!p1@ZNF467!0.88!30.98!ZNF467;;chr19:20011744..20011770,+!p1@ZNF93!0.87!26.07!ZNF93;;chr17:41277372..41277418,-!p1@BRCA1!0.87!24.55!BRCA1;;chr2:214014959..214015006,-!p4@IKZF2!0.87!6.43!IKZF2;;chr1:92949331..92949377,-!p2@GFI1!0.86!6.26!GFI1;;chr13:41593425..41593480,-!p1@ELF1!0.85!41.31!ELF1;;chr12:54694653..54694672,-!p2@NFE2!0.84!5.93!NFE2;;chr1:25291620..25291635,-!p4@RUNX3!0.84!5.93!RUNX3;;chr12:11802600..11802685,+!p1@ETV6!0.83!94.63!ETV6;;chr17:46622205..46622218,-!p3@HOXB2!0.83!6.77!HOXB2;;chr7:50343634..50343717,+!p2@IKZF1!0.83!5.76!IKZF1;;chr13:36871902..36872023,-!p1@CCDC169-SOHLH2,p1@CCDC169,p1@SOHLH2!0.82!12.87!SOHLH2;;chr1:23857698..23857733,-!p1@E2F2!0.81!10.33!E2F2;;chr3:168864315..168864339,-!p2@MECOM!0.81!9.31!MECOM;;chr11:47400045..47400060,-!p6@SPI1!0.81!5.42!SPI1;;chr17:46675420..46675465,-!p3@HOXB6!0.80!6.26!HOXB6;;chr6:144385698..144385742,-!p2@PLAGL1!0.79!6.43!PLAGL1;;chr1:221052994..221053008,+!p6@HLX!0.79!6.26!HLX;;chr8:145669791..145669834,-!p1@TONSL!0.78!15.41!TONSL;;chr14:89628064..89628109,-!p4@FOXN3!0.78!11.00!FOXN3;;chr3:71355163..71355209,-!p5@FOXP1!0.78!7.28!FOXP1;;chr4:57522166..57522260,-!p2@HOPX!0.78!5.93!HOPX;;chr2:25475094..25475112,-!p3@DNMT3A!0.78!5.08!DNMT3A;;chr21:34442439..34442455,+!p1@OLIG1!0.78!5.08!OLIG1;;chr18:22932004..22932021,-!p2@ZNF521!0.78!5.08!ZNF521;;chr2:63277948..63277974,+!p1@OTX1!0.77!4.91!OTX1;;chr13:100634004..100634025,+!p2@ZIC2!0.77!4.91!ZIC2;;chr8:116681409..116681431,-!p2@TRPS1!0.76!13.88!TRPS1;;chr19:22034809..22034878,-!p2@ZNF43!0.75!17.78!ZNF43;;chr7:27196217..27196246,-!p2@HOXA7!0.75!4.57!HOXA7;;chr22:21771656..21771662,+!p1@HIC2!0.75!4.57!HIC2;;chr17:40440481..40440550,+!p1@STAT5A!0.73!35.38!STAT5A;;chr14:74226961..74227020,-!p1@C14orf43!0.73!32.00!C14orf43;;chr17:46622070..46622109,-!p1@HOXB2!0.73!10.50!HOXB2;;chr21:40177845..40177863,+!p1@ETS2!0.72!286.95!ETS2;;chrX:70503529..70503549,+!p2@NONO!0.72!25.56!NONO;;chr15:66994523..66994541,+!p5@SMAD6!0.72!4.23!SMAD6;;chr11:47399920..47399931,-!p7@SPI1!0.72!4.23!SPI1;;chr2:60780753..60780800,-!p1@BCL11A!0.70!22.35!BCL11A;;chr19:12163769..12163798,-!p1@ZNF878!0.70!5.42!ZNF878;;chr2:100759010..100759035,-!p1@AFF3!0.70!4.06!AFF3;;chr6:21593973..21593988,+!p1@SOX4!0.69!160.32!SOX4;;chr16:29818160..29818188,+!p6@MAZ!0.69!20.48!MAZ;;chr6:20402102..20402152,+!p1@E2F3!0.69!18.11!E2F3;;chr5:88179195..88179224,-!p3@MEF2C!0.69!6.60!MEF2C;;chr2:60778035..60778060,-!p4@BCL11A!0.69!4.74!BCL11A;;chr17:46655672..46655697,-!p3@HOXB4!0.69!3.89!HOXB4;;chr11:32457075..32457095,-!p1@WT1!0.69!3.89!WT1;;chr16:68119324..68119364,+!p1@NFATC3!0.68!18.96!NFATC3;;chr17:46622114..46622138,-!p4@HOXB2!0.68!6.09!HOXB2;;chr8:116680833..116680881,-!p7@TRPS1!0.68!6.09!TRPS1;;chr16:88752889..88752921,-!p1@SNAI3!0.68!4.57!SNAI3;;chr17:46622229..46622257,-!p6@HOXB2!0.68!4.57!HOXB2;;chr6:21597765..21597779,+!p2@SOX4!0.67!33.86!SOX4;;chr14:55493763..55493824,-!p1@WDHD1!0.67!32.00!WDHD1;;chr2:66662249..66662267,+!p2@MEIS1!0.67!15.91!MEIS1;;chr19:20011775..20011800,+!p2@ZNF93!0.67!7.11!ZNF93;;chr7:128577972..128578047,+!p1@IRF5!0.67!6.26!IRF5;;chr17:46667594..46667619,-!p1@HOXB3!0.67!3.72!HOXB3;;chr11:32457103..32457123,-!p3@WT1!0.67!3.72!WT1;;chr14:65568389..65568408,-!p4@MAX!0.67!3.72!MAX;;chr15:66994561..66994597,+!p2@SMAD6!0.66!9.48!SMAD6;;chr8:116680215..116680245,-!p6@TRPS1!0.66!5.93!TRPS1;;chr19:20011731..20011743,+!p3@ZNF93!0.66!4.91!ZNF93;;chr2:16080635..16080650,+!p4@MYCN!0.66!3.56!MYCN;;chr19:45579725..45579743,-!p1@ZNF296!0.65!17.78!ZNF296;;chr19:19976683..19976709,+!p1@ZNF253!0.65!17.61!ZNF253;;chr19:20959098..20959117,+!p1@ZNF66P!0.65!16.25!ZNF66P;;chr21:36421535..36421610,-!p2@RUNX1!0.65!14.22!RUNX1;;chr7:149470540..149470596,-!p2@ZNF467!0.65!4.74!ZNF467;;chr7:64363638..64363667,+!p1@ZNF273!0.64!19.64!ZNF273;;chr5:124084493..124084524,-!p2@ZNF608!0.64!8.30!ZNF608;;chr2:100759037..100759058,-!p2@AFF3!0.64!3.39!AFF3;;chr15:57210961..57211012,+!p3@TCF12!0.63!12.02!TCF12;;chr17:42295777..42295816,-!p7@UBTF!0.63!4.06!UBTF;;chr11:128563948..128564003,+!p1@FLI1!0.62!45.71!FLI1;;chr16:88752836..88752852,-!p3@SNAI3!0.62!3.22!SNAI3;;chr19:13213465..13213478,-!p7@LYL1!0.62!3.22!LYL1;;chr19:13213634..13213645,-!p8@LYL1!0.62!3.22!LYL1;;chr2:66662396..66662407,+!p4@MEIS1!0.62!3.22!MEIS1;;chr6:135513595..135513617,+!p4@MYB!0.62!3.22!MYB;;chr20:35201993..35202050,+!p1@TGIF2!0.61!41.31!TGIF2;;chr14:65569101..65569119,-!p3@MAX!0.61!11.17!MAX;;chr1:247171316..247171336,-!p3@ZNF695!0.61!4.91!ZNF695;;chr1:92950138..92950159,-!p4@GFI1!0.61!3.05!GFI1;;chr11:128562372..128562397,+!p4@FLI1!0.61!3.05!FLI1;;chr12:54694738..54694749,-!p5@NFE2!0.61!3.05!NFE2;;chr17:40440446..40440464,+!p5@STAT5A!0.61!3.05!STAT5A;;chr19:23433144..23433204,-!p1@ZNF724P!0.60!15.91!ZNF724P;;chr8:72756063..72756125,-!p1@MSC!0.60!6.77!MSC;;chr18:47814010..47814021,-!p3@CXXC1!0.60!5.42!CXXC1;;chr11:47236584..47236679,+!p1@DDB2!0.59!38.77!DDB2;;chr16:67063211..67063240,+!p2@CBFB!0.59!16.42!CBFB;;chr7:64126535..64126559,+!p2@ZNF107!0.59!6.94!ZNF107;;chr19:12203069..12203094,+!p2@ZNF788!0.59!4.57!ZNF788;;chr17:40441330..40441344,+!p9@STAT5A!0.59!2.88!STAT5A;;chr12:56415246..56415286,+!p2@IKZF4!0.59!2.88!IKZF4;;chr3:18487057..18487105,-!p4@SATB1!0.59!2.88!SATB1;;chr2:8822176..8822196,+!p1@ID2!0.58!487.05!ID2;;chr19:56988677..56988729,-!p1@ZNF667!0.58!5.59!ZNF667;;chr1:221052733..221052749,+!p2@HLX!0.58!3.89!HLX;;chr1:158979686..158979745,+!p1@IFI16!0.57!112.24!IFI16;;chr19:21264991..21265026,+!p1@ZNF714!0.57!21.67!ZNF714;;chr17:41322281..41322328,-!p2@BRCA1!0.57!9.14!BRCA1;;chr2:214015111..214015179,-!p1@IKZF2!0.57!5.42!IKZF2;;chr1:158985493..158985535,+!p4@IFI16!0.57!4.57!IFI16;;chr1:3569101..3569115,+!p2@TP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19:3572758..3572795,+!p7@HMG20B!0.22!0.68!HMG20B;;chr19:35760698..35760738,+!p8@USF2!0.22!0.68!USF2;;chr1:14026722..14026733,+!p5@PRDM2!0.22!0.68!PRDM2;;chr1:167298300..167298319,+!p2@POU2F1!0.22!0.68!POU2F1;;chr1:221053444..221053473,+!p8@HLX!0.22!0.68!HLX;;chr1:25291678..25291685,-!p8@RUNX3!0.22!0.68!RUNX3;;chr1:47697539..47697573,-!p3@TAL1!0.22!0.68!TAL1;;chr1:92952473..92952489,-!p3@GFI1!0.22!0.68!GFI1;;chr20:31368212..31368235,+!p2@DNMT3B!0.22!0.68!DNMT3B;;chr21:30672433..30672464,+!p6@BACH1!0.22!0.68!BACH1;;chr5:140080022..140080042,+!p1@ZMAT2!0.21!78.72!ZMAT2;;chr19:19932513..19932569,-!p1@ZNF506!0.21!27.09!ZNF506;;chr1:53018743..53018777,-!p1@ZCCHC11!0.21!24.55!ZCCHC11;;chr8:124286495..124286548,-!p1@ZHX1!0.21!13.71!ZHX1;;chr16:88519669..88519726,+!p1@ZFPM1!0.21!12.70!ZFPM1;;chr19:12273866..12273935,+!p1@ZNF136!0.21!12.53!ZNF136;;chr19:1592714..1592762,-!p1@MBD3!0.21!10.50!MBD3;;chr16:69419749..69419786,-!p2@TERF2!0.21!7.79!TERF2;;chr19:44488330..44488379,+!p1@ZNF155!0.21!6.43!ZNF155;;chr19:19516507..19516539,+!p7@GATAD2A!0.21!3.56!GATAD2A;;chr5:43121653..43121678,+!p3@ZNF131!0.21!3.22!ZNF131;;chr11:128392309..128392350,-!p3@ETS1!0.21!2.71!ETS1;;chr16:73092963..73093001,-!p2@ZFHX3!0.21!2.54!ZFHX3;;chr16:8962544..8962584,-!p2@CARHSP1!0.21!2.54!CARHSP1;;chr18:51750414..51750449,-!p5@MBD2!0.21!2.03!MBD2;;chr19:2841497..2841523,+!p2@ZNF555!0.21!1.86!ZNF555;;chr19:58373157..58373159,+!p4@ZNF587!0.21!1.86!ZNF587;;chr21:34144157..34144175,-!p3@GCFC1!0.21!1.52!GCFC1;;chr6:21594845..21594908,+!p6@SOX4!0.21!1.52!SOX4;;chr1:8926441..8926473,-!p10@ENO1!0.21!1.35!ENO1;;chr22:42269885..42269899,+!p4@SREBF2!0.21!1.35!SREBF2;;chr14:89878529..89878559,-!p5@FOXN3!0.21!1.19!FOXN3;;chr15:35280509..35280520,-!p2@ZNF770!0.21!1.19!ZNF770;;chr15:42783258..42783270,-!p4@ZFP106!0.21!1.19!ZFP106;;chr8:116681275..116681290,-!p11@TRPS1!0.21!1.02!TRPS1;;chr8:81397820..81397836,+!p2@ZBTB10!0.21!1.02!ZBTB10;;chr13:46626824..46626835,-!p8@ZC3H13!0.21!1.02!ZC3H13;;chr2:61108808..61108821,+!p3@REL!0.21!1.02!REL;;chr15:85144307..85144329,+!p2@ZSCAN2!0.21!0.85!ZSCAN2;;chr16:67063262..67063273,+!p7@CBFB!0.21!0.85!CBFB;;chr14:45722261..45722272,-!p5@MIS18BP1!0.21!0.85!MIS18BP1;;chr1:47903709..47903764,+!p1@BC169308!0.21!0.85!FOXD2;;chr13:27998720..27998826,+!p1@GTF3A!0.20!136.96!GTF3A;;chr2:37458692..37458745,-!p1@CEBPZ!0.20!54.17!CEBPZ;;chr13:46626847..46626899,-!p1@ZC3H13!0.20!44.86!ZC3H13;;chr4:467892..467963,-!p1@ABCA11P,p1@ZNF721!0.20!35.72!ZNF721;;chr8:145159415..145159438,+!p2@MAF1!0.20!27.76!MAF1;;chr17:47492236..47492251,-!p1@PHB!0.20!19.30!PHB;;chr19:19496728..19496813,+!p2@GATAD2A!0.20!16.76!GATAD2A;;chr22:31742303..31742350,-!p1@PATZ1!0.20!15.24!PATZ1;;chr12:2986275..2986363,-!p1@FOXM1!0.20!13.88!FOXM1;;chr11:67007548..67007610,+!p3@KDM2A!0.20!9.99!KDM2A;;chr22:50247449..50247515,+!p1@ZBED4!0.20!5.76!ZBED4;;chr19:44507091..44507163,+!p1@ZNF230!0.20!5.59!ZNF230;;chr8:81398444..81398472,+!p1@ZBTB10!0.20!5.08!ZBTB10;;chr3:101395936..101395962,-!p2@ZBTB11!0.20!4.91!ZBTB11;;chr6:35227282..35227330,+!p2@ZNF76!0.20!4.57!ZNF76;;chr10:105110890..105110914,-!p2@PCGF6!0.20!4.40!PCGF6;;chr19:53445819..53445860,-!p2@ZNF321P,p2@ZNF816-ZNF321P,p2@ZNF816!0.20!3.56!ZNF321P;;chr19:19779619..19779670,+!p1@ZNF101!0.20!3.22!ZNF101;;chr12:57919293..57919311,+!p3@MBD6!0.20!3.05!MBD6;;chr12:66218255..66218304,+!p3@HMGA2!0.20!3.05!HMGA2;;chr13:20357110..20357121,-!p2@PSPC1!0.20!3.05!PSPC1;;chr19:58071166..58071189,-!p2@ZNF550!0.20!2.71!ZNF550;;chr12:19671171..19671175,+!p4@AEBP2!0.20!2.54!AEBP2;;chr19:52408227..52408243,-!p2@ZNF649!0.20!2.37!ZNF649;;chr16:3285049..3285081,-!p3@ZNF200!0.20!2.37!ZNF200;; | |expression_enrichment_score=chr20:31350184..31350200,+!p1@DNMT3B!1.91!163.71!DNMT3B;;chr21:39870339..39870443,-!p1@ERG!1.89!75.84!ERG;;chr7:27205136..27205164,-!p1@HOXA9!1.88!74.83!HOXA9;;chr20:62680984..62680999,-!p1@SOX18!1.78!77.54!SOX18;;chr12:54694758..54694805,-!p1@NFE2!1.76!67.72!NFE2;;chr1:25291475..25291511,-!p2@RUNX3!1.74!54.17!RUNX3;;chr11:47400078..47400106,-!p1@SPI1!1.66!44.35!SPI1;;chr2:16080659..16080685,+!p1@MYCN!1.64!42.32!MYCN;;chr19:13213511..13213545,-!p2@LYL1!1.62!43.68!LYL1;;chr12:54694807..54694832,-!p3@NFE2!1.61!40.12!NFE2;;chr2:68592406..68592424,+!p1@PLEK!1.60!38.43!PLEK;;chr9:135854091..135854159,+!p1@GFI1B!1.55!34.70!GFI1B;;chr6:135502501..135502546,+!p1@MYB!1.54!39.78!MYB;;chr19:33793430..33793447,-!p1@CEBPA!1.52!131.71!CEBPA;;chr12:54778471..54778528,-!p1@ZNF385A!1.48!29.29!ZNF385A;;chr17:40441354..40441410,+!p2@STAT5A!1.47!28.44!STAT5A;;chr19:13213662..13213686,-!p1@LYL1!1.45!39.95!LYL1;;chr2:16082155..16082169,+!p3@MYCN!1.45!27.09!MYCN;;chr12:54785074..54785122,-!p2@ZNF385A!1.44!39.95!ZNF385A;;chr5:88178983..88179012,-!p1@MEF2C!1.41!184.36!MEF2C;;chr7:50344289..50344323,+!p1@IKZF1!1.38!22.85!IKZF1;;chr12:96588368..96588394,+!p3@ELK3!1.35!56.20!ELK3;;chr11:47399996..47400014,-!p4@SPI1!1.35!21.50!SPI1;;chr7:115670804..115670825,-!p1@TFEC!1.35!21.16!TFEC;;chr7:27213893..27213954,-!p1@HOXA10!1.33!20.32!HOXA10;;chr9:20382446..20382493,-!p4@MLLT3!1.33!20.15!MLLT3;;chr12:54785054..54785072,-!p4@ZNF385A!1.32!22.69!ZNF385A;;chr7:27205106..27205134,-!p2@HOXA9!1.32!19.81!HOXA9;;chrX:2418949..2419024,-!p1@DHRSX,p1@ZBED1!1.30!18.96!ZBED1;;chr4:57522598..57522664,-!p3@HOPX!1.30!18.96!HOPX;;chr11:47399947..47399961,-!p3@SPI1!1.30!18.79!SPI1;;chr6:15401104..15401166,+!p5@JARID2!1.28!17.94!JARID2;;chr4:57522513..57522548,-!p4@HOPX!1.27!17.78!HOPX;;chr8:60031619..60031676,-!p1@TOX!1.24!35.38!TOX;;chr6:135502408..135502459,+!p2@MYB!1.24!18.96!MYB;;chr7:27192185..27192209,-!p1@HOXA3!1.24!16.42!HOXA3;;chr7:137620650..137620677,-!p3@CREB3L2!1.22!15.74!CREB3L2;;chr18:77155922..77155939,+!p1@NFATC1!1.20!39.95!NFATC1;;chr20:50159198..50159299,-!p1@NFATC2!1.16!19.81!NFATC2;;chr3:128206762..128206781,-!p2@GATA2!1.15!80.92!GATA2;;chr14:75988771..75988826,+!p1@BATF!1.15!17.44!BATF;;chr3:18486354..18486377,-!p2@SATB1!1.15!16.42!SATB1;;chr2:68592394..68592405,+!p2@PLEK!1.13!12.36!PLEK;;chr11:47400062..47400077,-!p2@SPI1!1.13!12.36!SPI1;;chr2:172949484..172949522,+!p1@DLX1!1.09!11.34!DLX1;;chr18:22932080..22932170,-!p1@ZNF521!1.06!44.52!ZNF521;;chr1:25256756..25256774,-!p1@RUNX3!1.06!19.64!RUNX3;;chr3:128212033..128212051,-!p1@GATA2!1.06!10.50!GATA2;;chr8:60031563..60031574,-!p7@TOX!1.06!10.50!TOX;;chr10:94449703..94449718,+!p1@HHEX!1.05!40.29!HHEX;;chr11:47279504..47279563,+!p1@NR1H3!1.05!23.36!NR1H3;;chr3:141747459..141747475,-!p1@TFDP2!1.04!84.98!TFDP2;;chr9:117150254..117150271,-!p1@AKNA!1.03!27.26!AKNA;;chr19:12203100..12203132,+!p1@ZNF788!1.03!19.81!ZNF788;;chr12:11802547..11802560,+!p5@ETV6!1.02!13.20!ETV6;;chr3:168865194..168865245,-!p3@MECOM!1.02!12.36!MECOM;;chr16:88752861..88752884,-!p2@SNAI3!1.02!9.48!SNAI3;;chr2:25475120..25475176,-!p2@DNMT3A!1.01!12.70!DNMT3A;;chr7:50348268..50348366,+!p4@IKZF1!1.01!9.14!IKZF1;;chr5:88179017..88179046,-!p2@MEF2C!1.00!36.74!MEF2C;;chr2:66662281..66662308,+!p1@MEIS1!1.00!31.49!MEIS1;;chr1:3569072..3569093,+!p1@TP73!1.00!8.97!TP73;;chr8:60031534..60031553,-!p8@TOX!0.97!8.30!TOX;;chr2:60780607..60780624,-!p2@BCL11A!0.96!25.73!BCL11A;;chr17:41623692..41623715,-!p1@ETV4!0.95!35.21!ETV4;;chr11:47400032..47400043,-!p5@SPI1!0.95!7.96!SPI1;;chr10:94449675..94449694,+!p2@HHEX!0.94!21.16!HHEX;;chr4:57522674..57522699,-!p5@HOPX!0.94!7.79!HOPX;;chr1:92951607..92951661,-!p1@GFI1!0.94!7.62!GFI1;;chr7:137620684..137620711,-!p4@CREB3L2!0.94!7.62!CREB3L2;;chr19:22817119..22817145,+!p1@ZNF492!0.93!12.70!ZNF492;;chr6:135502472..135502489,+!p3@MYB!0.93!7.45!MYB;;chr3:141747441..141747452,-!p4@TFDP2!0.92!10.50!TFDP2;;chr3:168865250..168865272,-!p5@MECOM!0.92!7.28!MECOM;;chr7:27224842..27224872,-!p1@HOXA11!0.92!7.28!HOXA11;;chr1:47691303..47691319,-!p5@TAL1!0.91!7.11!TAL1;;chr1:221052776..221052799,+!p1@HLX!0.90!12.87!HLX;;chr19:13213555..13213568,-!p5@LYL1!0.90!6.94!LYL1;;chr7:50344251..50344288,+!p3@IKZF1!0.90!6.94!IKZF1;;chr5:321810..321877,+!p1@AHRR!0.89!22.69!AHRR;;chr2:16081912..16081931,+!p2@MYCN!0.89!6.77!MYCN;;chr7:149470641..149470694,-!p1@ZNF467!0.88!30.98!ZNF467;;chr19:20011744..20011770,+!p1@ZNF93!0.87!26.07!ZNF93;;chr17:41277372..41277418,-!p1@BRCA1!0.87!24.55!BRCA1;;chr2:214014959..214015006,-!p4@IKZF2!0.87!6.43!IKZF2;;chr1:92949331..92949377,-!p2@GFI1!0.86!6.26!GFI1;;chr13:41593425..41593480,-!p1@ELF1!0.85!41.31!ELF1;;chr12:54694653..54694672,-!p2@NFE2!0.84!5.93!NFE2;;chr1:25291620..25291635,-!p4@RUNX3!0.84!5.93!RUNX3;;chr12:11802600..11802685,+!p1@ETV6!0.83!94.63!ETV6;;chr17:46622205..46622218,-!p3@HOXB2!0.83!6.77!HOXB2;;chr7:50343634..50343717,+!p2@IKZF1!0.83!5.76!IKZF1;;chr13:36871902..36872023,-!p1@CCDC169-SOHLH2,p1@CCDC169,p1@SOHLH2!0.82!12.87!SOHLH2;;chr1:23857698..23857733,-!p1@E2F2!0.81!10.33!E2F2;;chr3:168864315..168864339,-!p2@MECOM!0.81!9.31!MECOM;;chr11:47400045..47400060,-!p6@SPI1!0.81!5.42!SPI1;;chr17:46675420..46675465,-!p3@HOXB6!0.80!6.26!HOXB6;;chr6:144385698..144385742,-!p2@PLAGL1!0.79!6.43!PLAGL1;;chr1:221052994..221053008,+!p6@HLX!0.79!6.26!HLX;;chr8:145669791..145669834,-!p1@TONSL!0.78!15.41!TONSL;;chr14:89628064..89628109,-!p4@FOXN3!0.78!11.00!FOXN3;;chr3:71355163..71355209,-!p5@FOXP1!0.78!7.28!FOXP1;;chr4:57522166..57522260,-!p2@HOPX!0.78!5.93!HOPX;;chr2:25475094..25475112,-!p3@DNMT3A!0.78!5.08!DNMT3A;;chr21:34442439..34442455,+!p1@OLIG1!0.78!5.08!OLIG1;;chr18:22932004..22932021,-!p2@ZNF521!0.78!5.08!ZNF521;;chr2:63277948..63277974,+!p1@OTX1!0.77!4.91!OTX1;;chr13:100634004..100634025,+!p2@ZIC2!0.77!4.91!ZIC2;;chr8:116681409..116681431,-!p2@TRPS1!0.76!13.88!TRPS1;;chr19:22034809..22034878,-!p2@ZNF43!0.75!17.78!ZNF43;;chr7:27196217..27196246,-!p2@HOXA7!0.75!4.57!HOXA7;;chr22:21771656..21771662,+!p1@HIC2!0.75!4.57!HIC2;;chr17:40440481..40440550,+!p1@STAT5A!0.73!35.38!STAT5A;;chr14:74226961..74227020,-!p1@C14orf43!0.73!32.00!C14orf43;;chr17:46622070..46622109,-!p1@HOXB2!0.73!10.50!HOXB2;;chr21:40177845..40177863,+!p1@ETS2!0.72!286.95!ETS2;;chrX:70503529..70503549,+!p2@NONO!0.72!25.56!NONO;;chr15:66994523..66994541,+!p5@SMAD6!0.72!4.23!SMAD6;;chr11:47399920..47399931,-!p7@SPI1!0.72!4.23!SPI1;;chr2:60780753..60780800,-!p1@BCL11A!0.70!22.35!BCL11A;;chr19:12163769..12163798,-!p1@ZNF878!0.70!5.42!ZNF878;;chr2:100759010..100759035,-!p1@AFF3!0.70!4.06!AFF3;;chr6:21593973..21593988,+!p1@SOX4!0.69!160.32!SOX4;;chr16:29818160..29818188,+!p6@MAZ!0.69!20.48!MAZ;;chr6:20402102..20402152,+!p1@E2F3!0.69!18.11!E2F3;;chr5:88179195..88179224,-!p3@MEF2C!0.69!6.60!MEF2C;;chr2:60778035..60778060,-!p4@BCL11A!0.69!4.74!BCL11A;;chr17:46655672..46655697,-!p3@HOXB4!0.69!3.89!HOXB4;;chr11:32457075..32457095,-!p1@WT1!0.69!3.89!WT1;;chr16:68119324..68119364,+!p1@NFATC3!0.68!18.96!NFATC3;;chr17:46622114..46622138,-!p4@HOXB2!0.68!6.09!HOXB2;;chr8:116680833..116680881,-!p7@TRPS1!0.68!6.09!TRPS1;;chr16:88752889..88752921,-!p1@SNAI3!0.68!4.57!SNAI3;;chr17:46622229..46622257,-!p6@HOXB2!0.68!4.57!HOXB2;;chr6:21597765..21597779,+!p2@SOX4!0.67!33.86!SOX4;;chr14:55493763..55493824,-!p1@WDHD1!0.67!32.00!WDHD1;;chr2:66662249..66662267,+!p2@MEIS1!0.67!15.91!MEIS1;;chr19:20011775..20011800,+!p2@ZNF93!0.67!7.11!ZNF93;;chr7:128577972..128578047,+!p1@IRF5!0.67!6.26!IRF5;;chr17:46667594..46667619,-!p1@HOXB3!0.67!3.72!HOXB3;;chr11:32457103..32457123,-!p3@WT1!0.67!3.72!WT1;;chr14:65568389..65568408,-!p4@MAX!0.67!3.72!MAX;;chr15:66994561..66994597,+!p2@SMAD6!0.66!9.48!SMAD6;;chr8:116680215..116680245,-!p6@TRPS1!0.66!5.93!TRPS1;;chr19:20011731..20011743,+!p3@ZNF93!0.66!4.91!ZNF93;;chr2:16080635..16080650,+!p4@MYCN!0.66!3.56!MYCN;;chr19:45579725..45579743,-!p1@ZNF296!0.65!17.78!ZNF296;;chr19:19976683..19976709,+!p1@ZNF253!0.65!17.61!ZNF253;;chr19:20959098..20959117,+!p1@ZNF66P!0.65!16.25!ZNF66P;;chr21:36421535..36421610,-!p2@RUNX1!0.65!14.22!RUNX1;;chr7:149470540..149470596,-!p2@ZNF467!0.65!4.74!ZNF467;;chr7:64363638..64363667,+!p1@ZNF273!0.64!19.64!ZNF273;;chr5:124084493..124084524,-!p2@ZNF608!0.64!8.30!ZNF608;;chr2:100759037..100759058,-!p2@AFF3!0.64!3.39!AFF3;;chr15:57210961..57211012,+!p3@TCF12!0.63!12.02!TCF12;;chr17:42295777..42295816,-!p7@UBTF!0.63!4.06!UBTF;;chr11:128563948..128564003,+!p1@FLI1!0.62!45.71!FLI1;;chr16:88752836..88752852,-!p3@SNAI3!0.62!3.22!SNAI3;;chr19:13213465..13213478,-!p7@LYL1!0.62!3.22!LYL1;;chr19:13213634..13213645,-!p8@LYL1!0.62!3.22!LYL1;;chr2:66662396..66662407,+!p4@MEIS1!0.62!3.22!MEIS1;;chr6:135513595..135513617,+!p4@MYB!0.62!3.22!MYB;;chr20:35201993..35202050,+!p1@TGIF2!0.61!41.31!TGIF2;;chr14:65569101..65569119,-!p3@MAX!0.61!11.17!MAX;;chr1:247171316..247171336,-!p3@ZNF695!0.61!4.91!ZNF695;;chr1:92950138..92950159,-!p4@GFI1!0.61!3.05!GFI1;;chr11:128562372..128562397,+!p4@FLI1!0.61!3.05!FLI1;;chr12:54694738..54694749,-!p5@NFE2!0.61!3.05!NFE2;;chr17:40440446..40440464,+!p5@STAT5A!0.61!3.05!STAT5A;;chr19:23433144..23433204,-!p1@ZNF724P!0.60!15.91!ZNF724P;;chr8:72756063..72756125,-!p1@MSC!0.60!6.77!MSC;;chr18:47814010..47814021,-!p3@CXXC1!0.60!5.42!CXXC1;;chr11:47236584..47236679,+!p1@DDB2!0.59!38.77!DDB2;;chr16:67063211..67063240,+!p2@CBFB!0.59!16.42!CBFB;;chr7:64126535..64126559,+!p2@ZNF107!0.59!6.94!ZNF107;;chr19:12203069..12203094,+!p2@ZNF788!0.59!4.57!ZNF788;;chr17:40441330..40441344,+!p9@STAT5A!0.59!2.88!STAT5A;;chr12:56415246..56415286,+!p2@IKZF4!0.59!2.88!IKZF4;;chr3:18487057..18487105,-!p4@SATB1!0.59!2.88!SATB1;;chr2:8822176..8822196,+!p1@ID2!0.58!487.05!ID2;;chr19:56988677..56988729,-!p1@ZNF667!0.58!5.59!ZNF667;;chr1:221052733..221052749,+!p2@HLX!0.58!3.89!HLX;;chr1:158979686..158979745,+!p1@IFI16!0.57!112.24!IFI16;;chr19:21264991..21265026,+!p1@ZNF714!0.57!21.67!ZNF714;;chr17:41322281..41322328,-!p2@BRCA1!0.57!9.14!BRCA1;;chr2:214015111..214015179,-!p1@IKZF2!0.57!5.42!IKZF2;;chr1:158985493..158985535,+!p4@IFI16!0.57!4.57!IFI16;;chr1:3569101..3569115,+!p2@TP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| ||
Line 38: | Line 41: | ||
|fonse_treatment_closure= | |fonse_treatment_closure= | ||
|has_quality= | |has_quality= | ||
|hg19bam=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.cell_line.hCAGE/acute%2520myeloid%2520leukemia%2520%2528FAB%2520M4%2529%2520cell%2520line%253aHNT-34.CNhs13504.10831-111D3.hg19.nobarcode.bam | |||
|hg19ctss=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.cell_line.hCAGE/acute%2520myeloid%2520leukemia%2520%2528FAB%2520M4%2529%2520cell%2520line%253aHNT-34.CNhs13504.10831-111D3.hg19.ctss.bed.gz | |||
|hg19fasta=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.cell_line.hCAGE/acute%2520myeloid%2520leukemia%2520%2528FAB%2520M4%2529%2520cell%2520line%253aHNT-34.CNhs13504.10831-111D3.hg19.nobarcode.rdna.fa.gz | |||
|hg38bam=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.cell_line.hCAGE/acute%2520myeloid%2520leukemia%2520%2528FAB%2520M4%2529%2520cell%2520line%253aHNT-34.CNhs13504.10831-111D3.hg38.nobarcode.bam | |||
|hg38ctss=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.cell_line.hCAGE/acute%2520myeloid%2520leukemia%2520%2528FAB%2520M4%2529%2520cell%2520line%253aHNT-34.CNhs13504.10831-111D3.hg38.nobarcode.ctss.bed.gz | |||
|id=FF:10831-111D3 | |id=FF:10831-111D3 | ||
|is_a=EFO:0002091;;FF:0000210;;FF:0101883 | |is_a=EFO:0002091;;FF:0000210;;FF:0101883 | ||
|is_obsolete= | |is_obsolete= | ||
|library_id=CNhs13504 | |||
|library_id_phase_based=2:CNhs13504 | |||
|microRNAs= | |||
|microRNAs_nn= | |||
|microRNAs_nonnovel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer/#/human#cage;sample;10831 | |||
|microRNAs_novel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer_novel/#/human#cage;sample;10831 | |||
|name=acute myeloid leukemia (FAB M4) cell line:HNT-34 | |name=acute myeloid leukemia (FAB M4) cell line:HNT-34 | ||
|namespace=FANTOM5 | |namespace=FANTOM5 | ||
Line 46: | Line 60: | ||
|profile_cagescan=,,, | |profile_cagescan=,,, | ||
|profile_hcage=CNhs13504,LSID1025,release012,COMPLETED | |profile_hcage=CNhs13504,LSID1025,release012,COMPLETED | ||
|profile_rnaseq= | |profile_rnaseq= | ||
|profile_srnaseq=,,, | |profile_srnaseq=,,, | ||
|refex=http://refex.dbcls.jp/genelist.php?lang | |||
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Line 63: | Line 78: | ||
|rna_weight_ug=10.5 | |rna_weight_ug=10.5 | ||
|sample_age=45 | |sample_age=45 | ||
|sample_category=cell lines | |||
|sample_cell_catalog=RCB1296 | |sample_cell_catalog=RCB1296 | ||
|sample_cell_line=HNT-34 | |sample_cell_line=HNT-34 | ||
Line 84: | Line 100: | ||
|top_motifs=PAX4:2.07953789872;YY1:1.69469659723;E2F1..5:1.5738767742;ALX1:1.50578694898;FOX{I1,J2}:1.3529437393;GATA6:1.21525800452;IKZF2:1.14929773385;TEF:1.12686522253;MYB:1.11979076133;ELF1,2,4:1.04323356621;ZBTB16:1.03229796035;PDX1:0.97238284352;ARID5B:0.971182463046;SPIB:0.965544485896;FOXP3:0.948598415977;PBX1:0.900561552307;ONECUT1,2:0.88359950571;PITX1..3:0.877293562549;CDX1,2,4:0.870116969145;DMAP1_NCOR{1,2}_SMARC:0.855648337371;NANOG:0.847314197489;ZNF143:0.813918551618;FOXQ1:0.788196254384;NANOG{mouse}:0.714499628108;SPI1:0.662744890803;HAND1,2:0.661562384426;RXR{A,B,G}_{NR1H2,PPAR}dimers:0.651362512569;POU1F1:0.625748136984;AIRE:0.616578781021;RXRA_VDR{dimer}:0.614304940496;NKX2-3_NKX2-5:0.593402586778;RUNX1..3:0.572486485743;BREu{core}:0.560984160054;TLX2:0.558164491057;CUX2:0.551926204196;NRF1:0.544265323838;PAX8:0.541938106671;NR5A1,2:0.516665268688;NFY{A,B,C}:0.47250441515;OCT4_SOX2{dimer}:0.429281959325;PAX6:0.420503475811;HOXA9_MEIS1:0.409686928504;FOXD3:0.396959596176;ETS1,2:0.390672429797;NKX6-1,2:0.379601429382;ZNF148:0.369408891308;ELK1,4_GABP{A,B1}:0.332633033103;TFDP1:0.325003340432;NKX3-2:0.305331649175;GCM1,2:0.301052923197;POU2F1..3:0.291959147358;RORA:0.279728804049;POU6F1:0.244108389139;RBPJ:0.241554133673;GATA4:0.217665408057;VSX1,2:0.147041518391;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:0.141888654804;FOXA2:0.139437599574;HOX{A4,D4}:0.137665912566;FOXP1:0.137548342365;IRF1,2:0.132183735052;TOPORS:0.131156114603;ESR1:0.130314891253;POU3F1..4:0.122680132422;NFIX:0.117092682525;SOX5:0.0646977475258;HES1:0.0527059720903;NKX2-1,4:0.043501729003;SNAI1..3:0.0336562871704;FOX{F1,F2,J1}:0.0325828709732;SOX17:0.0150020650652;NKX2-2,8:0.00956342427633;HBP1_HMGB_SSRP1_UBTF:0.00813906573087;T:-0.002889866035;FOXN1:-0.00897500645713;EVI1:-0.0196770048115;HNF4A_NR2F1,2:-0.026118958086;AR:-0.0332911421262;CRX:-0.0420619306424;LHX3,4:-0.0464383219188;BPTF:-0.0507747767849;STAT1,3:-0.0682988841013;EP300:-0.0684564300276;UFEwm:-0.0872400330429;PPARG:-0.0976139005516;STAT5{A,B}:-0.103227910704;ZNF384:-0.116403671418;NKX3-1:-0.116421014951;ZNF238:-0.11778246784;TGIF1:-0.126199982852;PRRX1,2:-0.130040890246;KLF4:-0.147767499194;MYBL2:-0.153301825731;PAX3,7:-0.155578495694;PAX1,9:-0.176909652835;HOX{A6,A7,B6,B7}:-0.185727179671;AHR_ARNT_ARNT2:-0.196101273338;RXR{A,B,G}:-0.200211858722;ZEB1:-0.231131495664;SOX{8,9,10}:-0.231570145211;POU5F1:-0.238258350003;HMGA1,2:-0.260948374242;HNF1A:-0.261340417309;bHLH_family:-0.26962921227;NR6A1:-0.282341466899;ATF5_CREB3:-0.328665347337;DBP:-0.376428022215;XBP1:-0.377586998688;NFKB1_REL_RELA:-0.383834397392;GFI1:-0.386271898383;MYOD1:-0.387102736957;LMO2:-0.421847379579;REST:-0.425618989841;RFX2..5_RFXANK_RFXAP:-0.426650420537;GZF1:-0.440017339187;RREB1:-0.44229292927;NFIL3:-0.443132309965;FOXM1:-0.445350465587;ZBTB6:-0.456780194367;FOSL2:-0.489384617052;HSF1,2:-0.495833146439;MEF2{A,B,C,D}:-0.512661191318;MZF1:-0.519793078323;EN1,2:-0.52374489671;NR1H4:-0.555138579669;PRDM1:-0.562947001002;NFE2:-0.5754734691;PAX2:-0.593472452823;TP53:-0.59525096731;LEF1_TCF7_TCF7L1,2:-0.599959773884;HOX{A5,B5}:-0.601550154546;SMAD1..7,9:-0.605104458191;IRF7:-0.608770727393;ZIC1..3:-0.619121024089;GTF2I:-0.624016743241;FOS_FOS{B,L1}_JUN{B,D}:-0.643341065302;BACH2:-0.650483982468;CEBPA,B_DDIT3:-0.651084508663;IKZF1:-0.65906111172;FOXO1,3,4:-0.670280446712;GTF2A1,2:-0.680878213971;MYFfamily:-0.693641609794;ZNF423:-0.696487110736;NFE2L2:-0.715645967435;ATF4:-0.721118362825;MED-1{core}:-0.73556981776;PATZ1:-0.741473423616;CREB1:-0.768284216612;SREBF1,2:-0.776862538214;HIC1:-0.791881184391;NHLH1,2:-0.793905147023;CDC5L:-0.805649450743;TFAP2B:-0.819846567959;TBX4,5:-0.840158897008;TFAP4:-0.856765056375;TFAP2{A,C}:-0.860403327552;PAX5:-0.861230964351;STAT2,4,6:-0.863059064401;SPZ1:-0.871744608361;EBF1:-0.876374798931;ATF2:-0.878790501888;ZFP161:-0.888583102403;MAZ:-0.911613186503;HMX1:-0.913907178255;NFATC1..3:-0.928913059528;HLF:-0.930825788104;FOX{D1,D2}:-0.973484876673;SOX2:-0.981962754917;ESRRA:-1.03679741378;NFE2L1:-1.0537582627;FOXL1:-1.08621245133;SRF:-1.09519979757;TEAD1:-1.096091569;RFX1:-1.09742313268;TBP:-1.10854479974;ALX4:-1.13247858998;TAL1_TCF{3,4,12}:-1.1645883548;EGR1..3:-1.16991637932;GLI1..3:-1.18021041764;MTE{core}:-1.21789479219;GFI1B:-1.22883278958;TLX1..3_NFIC{dimer}:-1.23543955323;NR3C1:-1.24151927559;XCPE1{core}:-1.29515661194;MAFB:-1.36062338876;MTF1:-1.3731649821;JUN:-1.68097163863;ADNP_IRX_SIX_ZHX:-1.68647584012;TFCP2:-1.69306322576;HIF1A:-1.75190328845;ATF6:-1.76264916721;SP1:-1.85441696882 | |top_motifs=PAX4:2.07953789872;YY1:1.69469659723;E2F1..5:1.5738767742;ALX1:1.50578694898;FOX{I1,J2}:1.3529437393;GATA6:1.21525800452;IKZF2:1.14929773385;TEF:1.12686522253;MYB:1.11979076133;ELF1,2,4:1.04323356621;ZBTB16:1.03229796035;PDX1:0.97238284352;ARID5B:0.971182463046;SPIB:0.965544485896;FOXP3:0.948598415977;PBX1:0.900561552307;ONECUT1,2:0.88359950571;PITX1..3:0.877293562549;CDX1,2,4:0.870116969145;DMAP1_NCOR{1,2}_SMARC:0.855648337371;NANOG:0.847314197489;ZNF143:0.813918551618;FOXQ1:0.788196254384;NANOG{mouse}:0.714499628108;SPI1:0.662744890803;HAND1,2:0.661562384426;RXR{A,B,G}_{NR1H2,PPAR}dimers:0.651362512569;POU1F1:0.625748136984;AIRE:0.616578781021;RXRA_VDR{dimer}:0.614304940496;NKX2-3_NKX2-5:0.593402586778;RUNX1..3:0.572486485743;BREu{core}:0.560984160054;TLX2:0.558164491057;CUX2:0.551926204196;NRF1:0.544265323838;PAX8:0.541938106671;NR5A1,2:0.516665268688;NFY{A,B,C}:0.47250441515;OCT4_SOX2{dimer}:0.429281959325;PAX6:0.420503475811;HOXA9_MEIS1:0.409686928504;FOXD3:0.396959596176;ETS1,2:0.390672429797;NKX6-1,2:0.379601429382;ZNF148:0.369408891308;ELK1,4_GABP{A,B1}:0.332633033103;TFDP1:0.325003340432;NKX3-2:0.305331649175;GCM1,2:0.301052923197;POU2F1..3:0.291959147358;RORA:0.279728804049;POU6F1:0.244108389139;RBPJ:0.241554133673;GATA4:0.217665408057;VSX1,2:0.147041518391;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:0.141888654804;FOXA2:0.139437599574;HOX{A4,D4}:0.137665912566;FOXP1:0.137548342365;IRF1,2:0.132183735052;TOPORS:0.131156114603;ESR1:0.130314891253;POU3F1..4:0.122680132422;NFIX:0.117092682525;SOX5:0.0646977475258;HES1:0.0527059720903;NKX2-1,4:0.043501729003;SNAI1..3:0.0336562871704;FOX{F1,F2,J1}:0.0325828709732;SOX17:0.0150020650652;NKX2-2,8:0.00956342427633;HBP1_HMGB_SSRP1_UBTF:0.00813906573087;T:-0.002889866035;FOXN1:-0.00897500645713;EVI1:-0.0196770048115;HNF4A_NR2F1,2:-0.026118958086;AR:-0.0332911421262;CRX:-0.0420619306424;LHX3,4:-0.0464383219188;BPTF:-0.0507747767849;STAT1,3:-0.0682988841013;EP300:-0.0684564300276;UFEwm:-0.0872400330429;PPARG:-0.0976139005516;STAT5{A,B}:-0.103227910704;ZNF384:-0.116403671418;NKX3-1:-0.116421014951;ZNF238:-0.11778246784;TGIF1:-0.126199982852;PRRX1,2:-0.130040890246;KLF4:-0.147767499194;MYBL2:-0.153301825731;PAX3,7:-0.155578495694;PAX1,9:-0.176909652835;HOX{A6,A7,B6,B7}:-0.185727179671;AHR_ARNT_ARNT2:-0.196101273338;RXR{A,B,G}:-0.200211858722;ZEB1:-0.231131495664;SOX{8,9,10}:-0.231570145211;POU5F1:-0.238258350003;HMGA1,2:-0.260948374242;HNF1A:-0.261340417309;bHLH_family:-0.26962921227;NR6A1:-0.282341466899;ATF5_CREB3:-0.328665347337;DBP:-0.376428022215;XBP1:-0.377586998688;NFKB1_REL_RELA:-0.383834397392;GFI1:-0.386271898383;MYOD1:-0.387102736957;LMO2:-0.421847379579;REST:-0.425618989841;RFX2..5_RFXANK_RFXAP:-0.426650420537;GZF1:-0.440017339187;RREB1:-0.44229292927;NFIL3:-0.443132309965;FOXM1:-0.445350465587;ZBTB6:-0.456780194367;FOSL2:-0.489384617052;HSF1,2:-0.495833146439;MEF2{A,B,C,D}:-0.512661191318;MZF1:-0.519793078323;EN1,2:-0.52374489671;NR1H4:-0.555138579669;PRDM1:-0.562947001002;NFE2:-0.5754734691;PAX2:-0.593472452823;TP53:-0.59525096731;LEF1_TCF7_TCF7L1,2:-0.599959773884;HOX{A5,B5}:-0.601550154546;SMAD1..7,9:-0.605104458191;IRF7:-0.608770727393;ZIC1..3:-0.619121024089;GTF2I:-0.624016743241;FOS_FOS{B,L1}_JUN{B,D}:-0.643341065302;BACH2:-0.650483982468;CEBPA,B_DDIT3:-0.651084508663;IKZF1:-0.65906111172;FOXO1,3,4:-0.670280446712;GTF2A1,2:-0.680878213971;MYFfamily:-0.693641609794;ZNF423:-0.696487110736;NFE2L2:-0.715645967435;ATF4:-0.721118362825;MED-1{core}:-0.73556981776;PATZ1:-0.741473423616;CREB1:-0.768284216612;SREBF1,2:-0.776862538214;HIC1:-0.791881184391;NHLH1,2:-0.793905147023;CDC5L:-0.805649450743;TFAP2B:-0.819846567959;TBX4,5:-0.840158897008;TFAP4:-0.856765056375;TFAP2{A,C}:-0.860403327552;PAX5:-0.861230964351;STAT2,4,6:-0.863059064401;SPZ1:-0.871744608361;EBF1:-0.876374798931;ATF2:-0.878790501888;ZFP161:-0.888583102403;MAZ:-0.911613186503;HMX1:-0.913907178255;NFATC1..3:-0.928913059528;HLF:-0.930825788104;FOX{D1,D2}:-0.973484876673;SOX2:-0.981962754917;ESRRA:-1.03679741378;NFE2L1:-1.0537582627;FOXL1:-1.08621245133;SRF:-1.09519979757;TEAD1:-1.096091569;RFX1:-1.09742313268;TBP:-1.10854479974;ALX4:-1.13247858998;TAL1_TCF{3,4,12}:-1.1645883548;EGR1..3:-1.16991637932;GLI1..3:-1.18021041764;MTE{core}:-1.21789479219;GFI1B:-1.22883278958;TLX1..3_NFIC{dimer}:-1.23543955323;NR3C1:-1.24151927559;XCPE1{core}:-1.29515661194;MAFB:-1.36062338876;MTF1:-1.3731649821;JUN:-1.68097163863;ADNP_IRX_SIX_ZHX:-1.68647584012;TFCP2:-1.69306322576;HIF1A:-1.75190328845;ATF6:-1.76264916721;SP1:-1.85441696882 | ||
|xref= | |xref= | ||
|zenbu_report=https://fantom.gsc.riken.jp/zenbu/reports/#miRNA_expression_atlas_human;search_select_hide=table111:FF:10831-111D3;search_select_hide=table117:FF:10831-111D3 | |||
}} | }} |
Latest revision as of 15:08, 3 June 2020
Name: | acute myeloid leukemia (FAB M4) cell line:HNT-34 |
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Species: | Human (Homo sapiens) |
Library ID: | CNhs13504 |
Sample type: | cell lines |
Genomic View: | UCSC |
RefEX: | Specific genes |
CAGEd-oPOSSUM: | link |
ZENBU report : | link |
Additional information | ||||||||||||||||||||||||||||
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Sample information
RNA information
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CAGE Accession numbers | ||||||||||||||||||||||||||||||||||||||||||||||
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Download raw sequence, BAM & CTSS | ||||||||||||||
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Relative expression to median (log10)
Transcription factors with enriched expression in this sampleRanked list of transcription factor promoter expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.
Co-expression clusters with enriched expression in this sampleRanked list of co-expression cluster expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed. <br>Analyst:NA <br><br>link to dataset.<br>data
Repeat families with enriched expression in this sample<b>Summary:</b>Ranked list of repeat family expression in this sample relative tothe median expression in the FANTOM5 collection is shown. Value is log10transformed.<br><b>Analyst:</b>NA<br><br>link to dataset.<br>data
TFBS(DNA)motifs over-represented in proximal region of promoters active in this sample
JASPAR motifs<b>Summary:</b>Association of JASPAR motif to the promoter expression in thissample. Pearson's correlation between the number of TFBSs estimated byusing the position-weight matrix for each promoter and its expression isexpressed as Z-score by taking the ones based on random position-weightmatrix, and the tail probability of the normal distribution correspondingto the Z-score is taken as the resulting P-value. Lower P-value indicatesmore (non-random) association of the motif to promoter expression<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data
library id: CNhs13504
FANTOM5 phase1 novel unique motifs<b>Summary:</b>Association of the 169 novel and unique motifs discovered in FANTOM5 phase1 in this sample. Among the de-novo motifs discovered by DMF, HOMER,ChIPMunk, and ScanAll, only novel motifs are selected after comparison with known motif sets, and their clustering based on MACRO-APE resulted in169 novel and unique motifs. Their association to the promoter expression is evaluated in the same way to the JASPAR motif above<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data
library id: CNhs13504
Novel motif | Logo | P-value |
---|---|---|
1 | 1 | 0.073 |
10 | 10 | 0.046 |
100 | 100 | 0.789 |
101 | 101 | 0.276 |
102 | 102 | 0.488 |
103 | 103 | 0.0723 |
104 | 104 | 0.639 |
105 | 105 | 0.825 |
106 | 106 | 0.963 |
107 | 107 | 0.777 |
108 | 108 | 0.841 |
109 | 109 | 0.133 |
11 | 11 | 0.0846 |
110 | 110 | 0.198 |
111 | 111 | 0.0485 |
112 | 112 | 0.861 |
113 | 113 | 0.76 |
114 | 114 | 0.029 |
115 | 115 | 0.447 |
116 | 116 | 0.266 |
117 | 117 | 0.0441 |
118 | 118 | 0.0488 |
119 | 119 | 0.693 |
12 | 12 | 0.66 |
120 | 120 | 0.253 |
121 | 121 | 0.259 |
122 | 122 | 0.954 |
123 | 123 | 0.00826 |
124 | 124 | 0.0046 |
125 | 125 | 0.0888 |
126 | 126 | 0.218 |
127 | 127 | 0.136 |
128 | 128 | 0.947 |
129 | 129 | 0.0577 |
13 | 13 | 0.0114 |
130 | 130 | 0.683 |
131 | 131 | 0.384 |
132 | 132 | 0.883 |
133 | 133 | 0.878 |
134 | 134 | 0.577 |
135 | 135 | 0.621 |
136 | 136 | 0.146 |
137 | 137 | 0.636 |
138 | 138 | 0.3 |
139 | 139 | 0.496 |
14 | 14 | 0.801 |
140 | 140 | 0.191 |
141 | 141 | 0.124 |
142 | 142 | 0.414 |
143 | 143 | 0.305 |
144 | 144 | 0.564 |
145 | 145 | 0.119 |
146 | 146 | 0.917 |
147 | 147 | 0.0536 |
148 | 148 | 0.224 |
149 | 149 | 0.816 |
15 | 15 | 0.28 |
150 | 150 | 0.788 |
151 | 151 | 0.8 |
152 | 152 | 0.25 |
153 | 153 | 0.8 |
154 | 154 | 0.897 |
155 | 155 | 0.0951 |
156 | 156 | 0.72 |
157 | 157 | 0.216 |
158 | 158 | 0.707 |
159 | 159 | 0.698 |
16 | 16 | 0.455 |
160 | 160 | 0.049 |
161 | 161 | 0.00837 |
162 | 162 | 0.584 |
163 | 163 | 0.986 |
164 | 164 | 0.335 |
165 | 165 | 0.448 |
166 | 166 | 0.705 |
167 | 167 | 0.0827 |
168 | 168 | 0.873 |
169 | 169 | 0.409 |
17 | 17 | 0.824 |
18 | 18 | 0.733 |
19 | 19 | 0.811 |
2 | 2 | 0.76 |
20 | 20 | 0.761 |
21 | 21 | 0.23 |
22 | 22 | 0.743 |
23 | 23 | 0.0251 |
24 | 24 | 0.104 |
25 | 25 | 0.288 |
26 | 26 | 0.0584 |
27 | 27 | 0.537 |
28 | 28 | 0.84 |
29 | 29 | 0.0532 |
3 | 3 | 0.0878 |
30 | 30 | 0.333 |
31 | 31 | 0.672 |
32 | 32 | 0.0787 |
33 | 33 | 0.182 |
34 | 34 | 0.862 |
35 | 35 | 0.154 |
36 | 36 | 0.0515 |
37 | 37 | 0.17 |
38 | 38 | 0.499 |
39 | 39 | 0.562 |
4 | 4 | 0.172 |
40 | 40 | 0.291 |
41 | 41 | 0.822 |
42 | 42 | 0.129 |
43 | 43 | 0.484 |
44 | 44 | 0.12 |
45 | 45 | 0.801 |
46 | 46 | 0.072 |
47 | 47 | 0.0449 |
48 | 48 | 0.0541 |
49 | 49 | 0.183 |
5 | 5 | 0.863 |
50 | 50 | 0.815 |
51 | 51 | 0.687 |
52 | 52 | 0.379 |
53 | 53 | 0.523 |
54 | 54 | 0.751 |
55 | 55 | 0.323 |
56 | 56 | 0.525 |
57 | 57 | 0.0562 |
58 | 58 | 0.193 |
59 | 59 | 0.381 |
6 | 6 | 0.582 |
60 | 60 | 0.962 |
61 | 61 | 0.11 |
62 | 62 | 0.129 |
63 | 63 | 0.595 |
64 | 64 | 0.232 |
65 | 65 | 0.544 |
66 | 66 | 0.0826 |
67 | 67 | 0.897 |
68 | 68 | 0.837 |
69 | 69 | 0.494 |
7 | 7 | 0.0318 |
70 | 70 | 0.304 |
71 | 71 | 0.0147 |
72 | 72 | 0.893 |
73 | 73 | 0.773 |
74 | 74 | 0.987 |
75 | 75 | 0.032 |
76 | 76 | 0.426 |
77 | 77 | 0.972 |
78 | 78 | 0.00476 |
79 | 79 | 0.0656 |
8 | 8 | 0.0354 |
80 | 80 | 0.185 |
81 | 81 | 0.419 |
82 | 82 | 0.601 |
83 | 83 | 0.784 |
84 | 84 | 0.689 |
85 | 85 | 0.421 |
86 | 86 | 0.748 |
87 | 87 | 0.779 |
88 | 88 | 0.285 |
89 | 89 | 0.841 |
9 | 9 | 0.912 |
90 | 90 | 0.0456 |
91 | 91 | 0.74 |
92 | 92 | 0.888 |
93 | 93 | 0.968 |
94 | 94 | 0.961 |
95 | 95 | 0.0819 |
96 | 96 | 0.838 |
97 | 97 | 0.336 |
98 | 98 | 0.159 |
99 | 99 | 0.772 |
de novo motifs identified by HOMER in promoters active in this sample<b>Summary:</b>The result of HOMER in this sample is shown.<br><b>Analyst:</b>NA <br>
library id: CNhs13504
FANTOM5 (FF) ontology
Direct parent terms
is_a relathionship
EFO:0002091 biological replicate
FF:0000210 human sample
FF:0101883 acute myeloid leukemia cell line sample
Ancestor terms (non development)<b>Summary:</b>Connected ontology terms with is_a, part_of or located_in relationship <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source data<br>data
CL: Cell type
0000000 (cell), 0000000 (cell)
0000003 (native cell)
0000988 (hematopoietic cell)
0000548 (animal cell)
0000763 (myeloid cell)
0002371 (somatic cell)
0000255 (eukaryotic cell)
DOID: Disease
4 (disease)
0050686 (organ system cancer)
162 (cancer)
2531 (hematologic cancer)
14566 (disease of cellular proliferation)
0060083 (immune system cancer)
1240 (leukemia)
8692 (myeloid leukemia)
FF: FANTOM5
0000102 (sample by type)
0000003 (cell line sample)
0000210 (human sample)
0000101 (sample by species)
0000001 (sample)
0100737 (leukemia cell line sample)
0101035 (hematopoietic cell line sample)
0101883 (acute myeloid leukemia cell line sample)
0100740 (myeloid leukemia cell line sample)
Ancestor terms (development)<b>Summary:</b>Connected ontology terms with develops_from, derives_from or preceded_by relationship <br><b>Analyst:</b> Hideya Kawaji <br><br>link to source data<br>data
CL:0000049 (common myeloid progenitor)
CL:0000134 (mesenchymal cell)