FF:10856-111G1: Difference between revisions

Latest revision as of 16:24, 3 June 2020

Name:	mesothelioma cell line:Mero-95
Species:	Human (Homo sapiens)
Library ID:	CNhs13073
Sample type:	cell lines
Genomic View:	UCSC
RefEX:	Specific genes
CAGEd-oPOSSUM:	link
ZENBU report :	link

Additional information

Sample information

strain	NA
tissue	mesothelium
dev stage	NA
sex	male
age	unknown
cell type	mesothelial cell
cell line	Mero-95
company	ECACC
collaboration	FANTOM5 OSC CORE (contact: Al Forrest)
External link for information	[{{{sample_info_link}}} {{{sample_info_link}}}]

RNA information

lot number	NA
catalog number	NA
sample type	total RNA
extraction protocol (Details)	OP-RNA-extraction-totalRNA-miRNeasy_Mini-v1.0

CAGE Accession numbers

Method		Sample accession id
CAGE		SAMD00005521

Library accession numbers

Library id		Method		Exp. accession id		Run accession id
CNhs13073		CAGE		DRX007945		DRR008817

Accession ID Hg19

Library id		BAM		CTSS
CNhs13073		DRZ000242		DRZ001627

Accession ID Hg38

Library id		BAM		CTSS
CNhs13073		DRZ011592		DRZ012977

Download raw sequence, BAM & CTSS

Hg19

Fasta	BAM	CTSS
download	download	donwload

Hg38

BAM	CTSS
download	donwload

Relative expression to median (log10)

Transcription factors with enriched expression in this sampleRanked list of transcription factor promoter expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.

Co-expression clusters with enriched expression in this sampleRanked list of co-expression cluster expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed. Analyst:NA link to dataset. data

Coexpression cluster	score
C0-CD14-Eosinophils-Neutrophils-Basophils-CD34-immature-Peripheral	0
C1-testis-epididymis-embryonic-medulla-pituitary-trachea-caudate	0
C10-occipital-temporal-parietal-brain-duodenum-Neurons-Neural	0
C100-rhabdomyosarcoma-gastric-pineal-Wilms-cervical-mesodermal-endometrial	0
C101-small-cerebellum-maxillary-colon-parietal-epididymis-merkel	0
C102-neuroblastoma-testicular-pituitary-carcinosarcoma-rectum-acantholytic-iPS	0
C103-CD4-CD8-Natural-Peripheral-Whole-Neutrophils-Basophils	0
C104-Mast-Basophils-immature-CD14-CD34-eye-Natural	0
C105-heart-skeletal-occipital-hippocampus-acute-Sebocyte-penis	0.181
C106-Hep2-epitheloid-placenta-cervical-rectal-anaplastic-glassy	0
C107-Neutrophils-CD14-Eosinophils-Monocytederived-Whole-Peripheral-blood	0
C108-breast-hepatoblastoma-MCF7-parotid-salivary-submaxillary-prostate	0
C109-Reticulocytes-non-acute-Hodgkin-Burkitt-retinoblastoma-lymphoma	0.238
C11-cerebellum-medulla-pons-parietal-occipital-middle-medial	0
C110-leukemia-chronic-Eosinophils-acute-Whole-CD34-Lymphatic	0
C111-medulla-lung-trachea-testis-caudate-epididymis-throat	0
C112-gastric-pancreas-temporal-duodenum-small-extraskeletal-adrenal	0
C113-thyroid-throat-lung-lymph-small-colon-trachea	0
C114-teratocarcinoma-medulloblastoma-carcinosarcoma-iPS-anaplastic-acute-neuroblastoma	0
C115-pituitary-Neural-caudate-putamen-amygdala-medulla-hippocampus	0
C116-myeloma-xeroderma-tonsil-CD19-spleen-lymph-trachea	0
C117-serous-clear-kidney-neuroectodermal-mesothelioma-endometrial-Intestinal	0
C118-cerebellum-parietal-occipital-medial-middle-frontal-insula	0
C119-CD4-CD8-Natural-Neutrophils-CD14-Peripheral-CD19	0
C12-Mast-Basophils-immature-chorionic-mature-CD14-Eosinophils	0
C120-immature-salivary-tongue-skin-cervical-CD14-CD34	0
C121-NK-Natural-CD8-CD4-anaplastic-chronic-B	0
C122-chronic-Reticulocytes-skeletal-leukemia-acute-colon-Tracheal	0
C123-CD19-Natural-CD8-CD4-CD14-Peripheral-Basophils	0
C124-small-temporal-duodenum-colon-gall-signet-Hepatocyte	0
C125-mucinous-alveolar-mesothelioma-Smooth-lung-CD14-Nucleus	0
C126-gastrointestinal-argyrophil-smallcell-merkel-bile-insula-brain	0
C127-maxillary-small-hepatoblastoma-hepatocellular-alveolar-colon-argyrophil	0
C128-testicular-choriocarcinoma-H9-teratocarcinoma-pancreatic-iPS-HES3GFP	0
C129-liver-Hepatocyte-colon-duodenum-temporal-testicular-small	0
C13-Neutrophils-Eosinophils-CD14-Monocytederived-Whole-Peripheral-CD4	0
C130-iPS-HES3GFP-H9-teratocarcinoma-testicular-colon-Alveolar	0
C131-lung-trachea-Alveolar-thyroid-umbilical-throat-skin	0
C132-acute-small-Dendritic-Macrophage-CD14-Neutrophils-Monocytederived	0
C133-signet-gall-small-kidney-colon-ductal-adenocarcinoma	0
C134-skeletal-diaphragm-tongue-throat-Skeletal-skin-penis	0
C135-neuroblastoma-retinoblastoma-carcinoid-choriocarcinoma-testicular-acute-rectum	0
C136-Wilms-extraskeletal-anaplastic-rhabdomyosarcoma-cholangiocellular-nonsmall-neuroectodermal	0
C137-large-ductal-melanoma-cervical-Endothelial-Smooth-chronic	0
C138-diffuse-Burkitt-lymphangiectasia-lymphoma-acute-CD19-pineal	0
C139-astrocytoma-skin-salivary-gall-serous-Mallassezderived-renal	0
C14-Whole-blood-Reticulocytes-liver-Neutrophils-Eosinophils-spleen	0
C140-Renal-Endothelial-Hepatic-Lymphatic-heart-lung-spleen	0
C141-Hodgkin-acute-thymus-chronic-vein-CD4-B	0
C142-Preadipocyte-Fibroblast-hepatic-Ewing-Adipocyte-Olfactory-Hair	0
C143-Monocytederived-CD14-Macrophage-Dendritic-Basophils-CD14CD16-Osteoblast	0
C144-CD4-tonsil-NK-appendix-CD8-splenic-mycosis	0
C145-neuroblastoma-peripheral-neuroectodermal-neuroepithelioma-carcinoid-adult-extraskeletal	0
C146-lymphangiectasia-lymphoma-gall-lymph-tonsil-gastric-transitionalcell	0
C147-Neutrophils-Eosinophils-CD4-CD14-CD8-Natural-Peripheral	0
C148-kidney-small-epididymis-pancreas-serous-duodenum-temporal	0
C149-occipital-medial-brain-amygdala-parietal-cerebral-cerebellum	0
C15-anaplastic-small-skeletal-neuroblastoma-parietal-temporal-tongue	0
C150-merkel-carcinoid-nonsmall-gastrointestinal-argyrophil-pineal-small	0
C151-CD14-Natural-Basophils-CD8-Eosinophils-CD4-Mast	0
C152-peripheral-neuroectodermal-neuroepithelioma-neuroblastoma-testicular-carcinoid-lung	0
C153-rhabdomyosarcoma-liposarcoma-pancreatic-somatostatinoma-Reticulocytes-lymphoma-testicular	0
C154-adenocarcinoma-Mesenchymal-Cardiac-small-sacrococcigeal-Smooth-Prostate	0
C155-pituitary-placenta-nonsmall-cervical-smallcell-choriocarcinoma-epitheloid	0
C156-plasma-splenic-hereditary-B-large-xeroderma-b	0
C157-testicular-H9-testis-iPS-teratocarcinoma-colon-trachea	0
C158-adrenal-gastric-temporal-parietal-duodenum-caudate-putamen	0
C159-choriocarcinoma-pancreatic-placenta-chorionic-testicular-bronchioalveolar-seminal	0
C16-medial-amygdala-occipital-parietal-olfactory-putamen-brain	0
C160-medulla-Hepatocyte-retina-corpus-liver-pineal-cerebral	0
C161-mesothelioma-Mesothelial-acute-mesenchymal-extraskeletal-renal-placenta	0
C162-spinal-locus-medulla-substantia-thalamus-globus-diencephalon	0
C163-Skeletal-skeletal-Pericytes-Hepatic-rhabdomyosarcoma-throat-mesenchymal	0
C164-signet-corpus-optic-mucinous-substantia-salivary-choriocarcinoma	0
C165-epithelioid-Adipocyte-mesothelioma-myxofibrosarcoma-lung-gastric-Mesothelial	0
C166-Macrophage-Monocytederived-Dendritic-adipose-lymph-CD14-lung	0
C167-Basophils-Mast-Eosinophils-Neutrophils-Peripheral-Whole-CD4	0
C168-Mast-CD14-immature-Basophils-Eosinophils-CD34-Peripheral	0
C169-hereditary-adult-gall-lymphangiectasia-chronic-b-choriocarcinoma	0
C17-Mast-CD14-Monocytederived-Lymphatic-Smooth-mesenchymal-Macrophage	0
C170-epitheloid-cervical-Hep2-keratoacanthoma-adult-neuroblastoma-signet	0
C171-merkel-neuroblastoma-pineal-retinoblastoma-carcinoid-small-eye	0
C172-chorionic-skeletal-tongue-amniotic-liver-gastrointestinal-Pericytes	0
C173-Adipocyte-mature-skin-left-Hepatocyte-Osteoblast-adipose	0
C174-CD14-Neutrophils-Smooth-mesothelioma-embryonic-Monocytederived-Eosinophils	0
C175-Eosinophils-Neutrophils-CD4-Basophils-CD19-CD8-Natural	0
C176-Eosinophils-Neutrophils-Mast-CD14-CD4-Basophils-CD19	-0.145
C177-melanoma-Melanocyte-mesenchymal-retina-Mallassezderived-Gingival-squamous	0
C178-spleen-liver-Hepatocyte-b-lymph-vein-thymus	0
C179-CD19-Peripheral-lymphoma-blood-lymph-spleen-tonsil	0
C18-CD4-CD8-thymus-Whole-Peripheral-Natural-blood	0
C180-skeletal-heart-Hepatocyte-acute-occipital-hippocampus-middle	0.0929
C181-liposarcoma-somatostatinoma-neuroblastoma-mesothelioma-nonsmall-small-Alveolar	0
C182-renal-mature-mesothelioma-lung-Mammary-Adipocyte-acute	0
C183-acute-non-CD34-diffuse-CD133-myeloma-Burkitt	0
C184-somatostatinoma-smallcell-nonsmall-small-gastrointestinal-pineal-thyroid	0
C185-small-adrenal-gastric-Mesenchymal-acute-HES3GFP-testis	0
C186-squamous-papillotubular-large-Tracheal-oral-Small-epidermoid	0
C187-migratory-immature-Dendritic-CD19-CD14-Monocytederived-Macrophage	0
C188-left-heart-tongue-skeletal-Skeletal-diaphragm-throat	0
C189-b-splenic-tonsil-CD19-lymph-appendix-spleen	0
C19-embryonic-testis-cord-chronic-CD14-NK-mesothelioma	0
C190-colon-small-rectum-duodenum-appendix-temporal-oral	0
C191-leiomyoblastoma-Mast-parietal-acute-bone-neuroepithelioma-embryonic	0
C192-Neutrophils-CD14-Peripheral-Eosinophils-CD8-Natural-CD4	0
C193-Mesenchymal-Adipocyte-mature-Cardiac-heart-CD14CD16-CD14	0
C194-MCF7-breast-prostate-Intestinal-diffuse-Wilms-Alveolar	0
C195-Small-Gingival-Bronchial-Smooth-mesenchymal-Urothelial-Tracheal	0
C196-testicular-iPS-H9-teratocarcinoma-HES3GFP-choriocarcinoma-endometrial	0
C197-tongue-esophagus-tonsil-salivary-cervix-nasal-Gingival	0
C198-Mesenchymal-Hair-Hepatic-Fibroblast-Smooth-tenocyte-Pericytes	0
C199-glioblastoma-B-osteosarcoma-Fibroblast-heart-rhabdomyosarcoma-myxofibrosarcoma	0
C2-Eosinophils-Neutrophils-CD14-Whole-Basophils-Peripheral-Mast	0
C20-heart-left-skeletal-diaphragm-tongue-umbilical-throat	0
C200-seminal-Cardiac-Smooth-Hair-submaxillary-Neutrophils-mixed	0
C201-colon-small-adenocarcinoma-duodenum-temporal-signet-gall	0
C202-salivary-skin-penis-tongue-uterus-cervical-immature	0
C203-acute-NK-chronic-CD133-lymphoma-immature-Dendritic	0
C204-Smooth-nasal-CD4-CD19-CD8-CD14-CD34	0
C205-mycosis-cord-hairy-xeroderma-CD4-B-b	0
C206-melanoma-somatostatinoma-nonsmall-small-neuroblastoma-smallcell-pituitary	0
C207-Corneal-Keratinocyte-Esophageal-Mammary-Bronchial-Urothelial-Sebocyte	0
C208-skin-amniotic-papillotubular-salivary-umbilical-Alveolar-serous	0
C209-acute-myelodysplastic-CD34-granulocyte-CD133-liver-spleen	0
C21-cord-mycosis-hairy-xeroderma-adult-CD4-anaplastic	0
C210-Burkitt-lymphoma-appendix-acute-diffuse-CD19-tonsil	0
C211-small-Hepatocyte-liver-colon-temporal-duodenum-kidney	0
C212-chronic-acute-Whole-Reticulocytes-leukemia-blood-CD34	0
C213-CD14-Natural-CD8-CD4-Basophils-Eosinophils-Peripheral	0
C214-Neurons-Neural-duodenum-temporal-occipital-parietal-brain	0
C215-chronic-acute-peripheral-Hepatocyte-osteosarcoma-NK-immature	0
C216-osteosarcoma-Smooth-Mesenchymal-large-neuroectodermal-acute-CD34	0
C217-carcinoid-neuroectodermal-mature-mesodermal-colon-acute-occipital	0
C218-tonsil-lymph-CD19-spleen-colon-appendix-salivary	0
C219-nasal-Basophils-amniotic-Melanocyte-CD14-Osteoblast-duodenum	0
C22-CD4-CD8-Natural-Basophils-CD14-Peripheral-CD19	0
C220-Adipocyte-mature-left-breast-skin-liver-adipose	0
C221-alveolar-Osteoblast-Myoblast-mesenchymal-liposarcoma-Smooth-hepatocellular	0
C222-Melanocyte-Tracheal-Neutrophils-seminal-Smooth-Hair-Chondrocyte	0.0429
C223-Chondrocyte-basal-renal-Fibroblast-Smooth-spindle-Synoviocyte	0
C224-clear-serous-pleomorphic-choriocarcinoma-mesothelioma-amniotic-renal	0
C225-ductal-alveolar-giant-prostate-salivary-squamous-Tracheal	0
C226-Corneal-Keratinocyte-Esophageal-Urothelial-Mammary-Bronchial-Tracheal	0
C227-chorionic-amniotic-Mesenchymal-Placental-gastric-diaphragm-tongue	0
C228-colon-Intestinal-Prostate-hepatoblastoma-hepatocellular-testis-adult	0
C229-Mesenchymal-CD4-Melanocyte-acute-skeletal-left-heart	0
C23-CD4-CD8-Natural-Peripheral-Basophils-CD19-CD14	0
C230-aorta-normal-heart-penis-osteosarcoma-basal-lung	0
C231-Mesothelial-mesenchymal-mesothelioma-Fibroblast-Preadipocyte-leiomyoma-mycosis	0.0861
C232-teratocarcinoma-HES3GFP-H9-iPS-testicular-neuroblastoma-cerebellum	0
C233-uterus-cervix-ovary-epididymis-colon-rectum-MCF7	0
C234-oral-epidermoid-malignant-cervical-ductal-lung-keratoacanthoma	0
C235-Intestinal-Prostate-liver-colon-small-kidney-pancreas	0
C236-CD14-Neutrophils-Monocytederived-renal-Eosinophils-testis-mesothelioma	0
C237-acute-breast-testicular-hepatoblastoma-chronic-argyrophil-Bronchial	0
C238-stomach-gall-breast-duodenum-temporal-MCF7-smallcell	0
C239-CD4-lymphangiectasia-CD8-NK-mycosis-Renal-hairy	0
C24-pineal-eye-retina-retinoblastoma-medulloblastoma-small-cerebral	0
C240-Adipocyte-Preadipocyte-Osteoblast-Chondrocyte-tenocyte-Synoviocyte-mesenchymal	0
C241-Reticulocytes-chronic-Tracheal-Hodgkin-Endothelial-Hair-thymus	0.272
C242-acute-Chondrocyte-myelodysplastic-granulocyte-biphenotypic-Fibroblast-stomach	0
C243-Chondrocyte-trachea-Synoviocyte-mesodermal-renal-Fibroblast-Ewing	0
C244-CD14-Monocytederived-Hepatocyte-heart-Neutrophils-acute-Macrophage	0
C245-prostate-penis-salivary-esophagus-kidney-Neutrophils-Pancreatic	0
C246-Neutrophils-Eosinophils-Whole-CD14-CD14CD16-Basophils-migratory	0
C247-pons-locus-medulla-spinal-paracentral-medial-occipital	0
C248-iPS-Aortic-Hep2-amygdala-acute-medial-Myoblast	0
C249-nonsmall-small-smallcell-occipital-somatostatinoma-maxillary-medial	0
C25-small-colon-temporal-duodenum-liver-Hepatocyte-gall	0
C250-Mast-Neutrophils-CD14-Eosinophils-CD8-Peripheral-CD4	0
C251-gall-tonsil-trachea-CD14-salivary-throat-tongue	0
C252-hepatic-Olfactory-sacrococcigeal-leiomyoma-normal-Synoviocyte-glioblastoma	0.158
C253-spleen-rhabdomyosarcoma-Hepatocyte-small-uterus-liver-rectum	0
C254-prostate-rhabdomyosarcoma-seminal-Fibroblast-transitionalcell-Smooth-Iris	0
C255-Wilms-leiomyoblastoma-kidney-adrenal-MCF7-epithelioid-Mast	0
C256-occipital-caudate-amygdala-medial-thalamus-hippocampus-medulla	0
C257-pineal-insula-frontal-occipital-temporal-medial-paracentral	0
C258-hepatoblastoma-hepatocellular-signet-colon-Intestinal-Prostate-gastric	0
C259-Preadipocyte-Adipocyte-Fibroblast-Chondrocyte-tenocyte-normal-Ewing	0.0861
C26-Eosinophils-Neutrophils-CD14-CD14CD16-Basophils-Monocytederived-Whole	0
C260-acute-chronic-Natural-NK-Basophils-biphenotypic-blood	0
C261-locus-medial-parietal-pons-diencephalon-olfactory-spinal	0
C262-breast-MCF7-skeletal-Reticulocytes-mucinous-hepatoblastoma-Wilms	0
C263-cervical-keratoacanthoma-tongue-skin-esophagus-throat-tonsil	0
C264-giant-keratoacanthoma-colon-fibrosarcoma-HES3GFP-Hep2-acute	0
C265-CD4-Eosinophils-CD14-Natural-CD19-Basophils-CD8	0
C266-acute-chronic-leukemia-small-choriocarcinoma-hepatoma-Mast	0
C267-pancreatic-placenta-choriocarcinoma-testicular-teratocarcinoma-chorionic-clear	0
C268-Mallassezderived-Urothelial-Gingival-Small-Bronchial-Tracheal-Prostate	0
C269-Basophils-Mast-Eosinophils-mature-CD14-chorionic-CD4	0
C27-pancreas-temporal-duodenum-salivary-ductus-umbilical-lung	0
C270-CD4-Fibroblast-acute-iPS-Aortic-CD34-Smooth	0
C271-pineal-spinal-locus-globus-medulla-thalamus-cerebellum	0
C272-CD19-CD4-CD8-Whole-Peripheral-lymph-tonsil	0
C273-Neutrophils-CD14-Eosinophils-Monocytederived-CD4-Natural-Mast	0
C274-CD14-Mast-immature-Basophils-mature-vagina-Hepatocyte	0
C275-pons-medulla-cerebellum-locus-thalamus-diencephalon-spinal	0
C276-mesothelioma-kidney-renal-small-clear-cerebellum-Renal	0
C277-mesothelioma-epithelioid-thyroid-extraskeletal-alveolar-glioblastoma-adenocarcinoma	0
C278-amygdala-hippocampus-insula-medial-putamen-temporal-olfactory	0
C279-parietal-cerebellum-occipital-temporal-middle-duodenum-medial	0
C28-thymus-acute-vein-Hodgkin-chronic-throat-Dendritic	0
C280-Mast-Natural-CD19-CD8-Eosinophils-CD34-CD4	0
C281-Hodgkin-Reticulocytes-chronic-NK-acute-retinoblastoma-small	0.301
C282-acute-B-tonsil-CD19-submaxillary-lymph-throat	0
C283-tenocyte-Chondrocyte-mesenchymal-Macrophage-pleomorphic-Synoviocyte-cholangiocellular	0.158
C284-parietal-occipital-medial-temporal-olfactory-locus-hippocampus	0.0861
C285-cervical-Hep2-small-colon-temporal-duodenum-bronchogenic	0
C286-cerebellum-occipital-optic-parietal-globus-caudate-medial	0
C287-Hepatocyte-Chondrocyte-Adipocyte-Synoviocyte-liver-tenocyte-mesenchymal	0
C288-Chondrocyte-Renal-Pericytes-Fibroblast-aorta-Smooth-Meningeal	0.632
C289-chorionic-skeletal-heart-Mast-amniotic-granulosa-left	0
C29-mature-adipose-Adipocyte-breast-Lymphatic-vein-heart	0
C290-Eosinophils-CD14-Basophils-Mast-CD4-CD8-immature	0
C291-spinal-substantia-retina-medulla-tongue-skeletal-trachea	0
C292-Mesenchymal-skin-umbilical-Adipocyte-mesenchymal-Chondrocyte-skeletal	0.297
C293-CD14-CD14CD16-Basophils-Peripheral-immature-Eosinophils-CD34	0
C294-CD14-Macrophage-Monocytederived-CD14CD16-Neutrophils-Basophils-Peripheral	0
C295-Fibroblast-Smooth-Myoblast-Chondrocyte-hepatic-Synoviocyte-Preadipocyte	0.158
C296-gall-small-mesothelioma-acute-bronchioalveolar-epidermoid-mixed	0
C297-Eosinophils-CD4-Basophils-Natural-Neutrophils-CD8-Peripheral	0
C298-small-optic-substantia-thalamus-diencephalon-globus-occipital	0
C299-CD14CD16-Eosinophils-Neutrophils-CD14-Whole-Basophils-blood	0
C3-occipital-temporal-insula-medial-postcentral-frontal-amygdala	0
C30-thyroid-throat-mesothelioma-mucinous-trachea-chorionic-mesenchymal	0
C300-CD4-CD8-NK-Natural-blood-mycosis-Basophils	0
C301-Smooth-mesenchymal-Endothelial-Hepatic-basal-hepatic-chorionic	0.0861
C302-acute-peripheral-Neutrophils-NK-myelodysplastic-CD34-carcinoid	0
C303-CD14-Basophils-Peripheral-Eosinophils-CD14CD16-Neutrophils-Whole	0
C305-heart-skeletal-smooth-left-bladder-penis-esophagus	0
C31-skeletal-tongue-diaphragm-throat-penis-skin-trachea	0
C32-middle-occipital-parietal-hippocampus-amygdala-medial-olfactory	0
C33-Reticulocytes-liver-Whole-blood-chronic-acute-spleen	0
C34-placenta-chorionic-choriocarcinoma-mesothelioma-Wilms-Smooth-bile	0
C35-caudate-putamen-diencephalon-nucleus-globus-thalamus-insula	0
C36-B-b-splenic-plasma-xeroderma-adrenal-Burkitt	0
C37-salivary-submaxillary-parotid-seminal-tongue-ductus-trachea	0
C38-extraskeletal-rhabdomyosarcoma-adrenal-rectal-mesothelioma-lung-Wilms	0
C39-epididymis-ductus-seminal-testis-acute-thyroid-CD133	0
C4-optic-corpus-substantia-medulla-spinal-thalamus-globus	0
C40-eye-retina-Lens-pineal-tongue-retinoblastoma-small	0
C41-retina-eye-medulla-Retinal-medulloblastoma-kidney-pineal	0
C42-small-lung-maxillary-pharyngeal-Mesenchymal-Wilms-colon	0
C43-ductus-seminal-duodenum-temporal-gall-prostate-bladder	0
C44-Dendritic-CD19-CD133-granulocyte-acute-thymus-immature	0
C45-testicular-choriocarcinoma-H9-teratocarcinoma-Wilms-pancreatic-iPS	0
C46-acute-Hodgkin-thymus-CD8-chronic-CD4-merkel	0
C47-CD19-Burkitt-acute-xeroderma-tonsil-lymphoma-appendix	0
C48-smooth-bladder-esophagus-colon-penis-aorta-uterus	0
C49-H9-iPS-testicular-HES3GFP-teratocarcinoma-hepatoblastoma-choriocarcinoma	0
C5-Hepatocyte-liver-hepatocellular-Intestinal-kidney-small-pancreas	0
C50-chorionic-placenta-amniotic-migratory-smallcell-chronic-choriocarcinoma	0
C51-kidney-mesothelioma-renal-signet-gall-lung-pancreas	0
C52-adult-NK-chronic-cord-testis-embryonic-myeloma	0
C53-medulloblastoma-pineal-retinoblastoma-small-retina-eye-pituitary	0
C54-Dendritic-Macrophage-Monocytederived-CD14-leiomyoma-adipose-immature	0
C55-hepatocellular-Intestinal-liver-Prostate-fibrosarcoma-Hepatocyte-hepatoblastoma	0
C56-heart-left-umbilical-skeletal-penis-diaphragm-tongue	0
C57-Neutrophils-Eosinophils-Whole-CD4-CD8-CD19-Natural	0
C58-Melanocyte-melanoma-retina-Retinal-eye-migratory-H9	0
C59-Smooth-Fibroblast-Mesenchymal-tenocyte-Ewing-skin-hepatic	0.158
C6-CD14-Eosinophils-Basophils-Peripheral-CD34-Natural-immature	0
C60-esophagus-tonsil-throat-tongue-uterus-cervix-cervical	0
C61-migratory-Dendritic-immature-Macrophage-xeroderma-cord-b	0
C62-Burkitt-tonsil-CD19-submaxillary-spleen-salivary-lymph	0
C63-neuroectodermal-neuroblastoma-carcinoid-peripheral-chronic-neuroepithelioma-acute	0
C64-Mast-chronic-acute-immature-chorionic-Basophils-Dendritic	0
C65-CD14-Eosinophils-Monocytederived-Basophils-immature-Macrophage-Neutrophils	0
C66-cerebellum-middle-occipital-parietal-medial-amygdala-hippocampus	0
C67-CD14-Monocytederived-Macrophage-dura-Dendritic-spleen-lung	0
C68-amniotic-chorionic-Placental-salivary-placenta-tongue-mesothelioma	0
C69-anaplastic-CD14-cord-hairy-mycosis-adult-NK	0
C7-CD14-Eosinophils-Neutrophils-Smooth-Basophils-Macrophage-Mast	0
C70-parotid-submaxillary-salivary-throat-trachea-aorta-tongue	0
C71-Monocytederived-Macrophage-CD14-Dendritic-Osteoblast-leiomyoma-Prostate	0
C72-skeletal-tongue-throat-heart-diaphragm-penis-left	0
C73-pineal-eye-retina-caudate-cerebellum-left-parietal	0
C74-splenic-B-b-plasma-xeroderma-lymphoma-hairy	0
C75-Eosinophils-Natural-CD8-Basophils-CD14-CD4-Peripheral	0
C76-argyrophil-gastrointestinal-temporal-duodenum-neuroblastoma-merkel-smallcell	0
C77-Saos2-osteosarcoma-Neutrophils-Natural-Chondrocyte-Basophils-CD8	0
C78-lymphoma-plasma-tonsil-appendix-lymph-seminal-trachea	0
C79-chorionic-Chondrocyte-Cardiac-Smooth-Fibroblast-Preadipocyte-Mesenchymal	0
C8-Natural-CD8-Basophils-CD4-CD14-Peripheral-CD34	0
C80-immature-migratory-CD14-Dendritic-splenic-cord-Mast	0
C81-trachea-salivary-throat-aorta-eye-submaxillary-parotid	0
C82-Basophils-CD14-Eosinophils-Natural-Peripheral-immature-CD34	0
C83-choriocarcinoma-pancreatic-placenta-chorionic-HES3GFP-testicular-amniotic	0
C84-choriocarcinoma-pancreatic-Wilms-Mallassezderived-thymus-salivary-colon	0
C85-neuroblastoma-carcinoid-retinoblastoma-small-pineal-rhabdomyosarcoma-medulloblastoma	0
C86-colon-carcinoid-small-neuroectodermal-giant-large-neuroepithelioma	0
C87-retinoblastoma-left-nonsmall-heart-small-diaphragm-bronchogenic	0
C88-Melanocyte-melanoma-Macrophage-Mesenchymal-migratory-Dendritic-Monocytederived	0
C89-small-retinoblastoma-medulloblastoma-iPS-acantholytic-eye-bronchogenic	0
C9-skeletal-diaphragm-tongue-throat-penis-heart-left	0
C90-neuroectodermal-peripheral-neuroepithelioma-neuroblastoma-carcinoid-parietal-putamen	0
C91-Fibroblast-Smooth-mesenchymal-Mesothelial-Small-Preadipocyte-Hair	0
C92-CD14CD16-CD14-Eosinophils-Basophils-Neutrophils-Macrophage-Whole	0
C93-chronic-acute-leukemia-acantholytic-medulloblastoma-testis-papillotubular	0
C94-smallcell-adrenal-lung-nonsmall-small-somatostatinoma-teratocarcinoma	0
C95-lung-aorta-trachea-penis-Alveolar-throat-endometrioid	0
C96-non-acute-tonsil-spleen-Burkitt-lymphoma-appendix	0
C97-small-smallcell-gastrointestinal-argyrophil-putamen-duodenum-brain	0
C98-CD8-Natural-Basophils-blood-CD4-Peripheral-Whole	0
C99-hairy-mycosis-submaxillary-salivary-cord-kidney-parotid	0

Repeat families with enriched expression in this sampleSummary:Ranked list of repeat family expression in this sample relative tothe median expression in the FANTOM5 collection is shown. Value is log10transformed. Analyst:NA link to dataset. data

TFBS(DNA)motifs over-represented in proximal region of promoters active in this sample

JASPAR motifsSummary:Association of JASPAR motif to the promoter expression in thissample. Pearson's correlation between the number of TFBSs estimated byusing the position-weight matrix for each promoter and its expression isexpressed as Z-score by taking the ones based on random position-weightmatrix, and the tail probability of the normal distribution correspondingto the Z-score is taken as the resulting P-value. Lower P-value indicatesmore (non-random) association of the motif to promoter expression Analyst: Michiel de Hoon link to dataset. data

library id: CNhs13073

Jaspar motif	Logo	P-value
MA0002.2	MA0002.2	9.41269e-4
MA0003.1	MA0003.1	0.943
MA0004.1	MA0004.1	0.103
MA0006.1	MA0006.1	0.228
MA0007.1	MA0007.1	0.934
MA0009.1	MA0009.1	0.543
MA0014.1	MA0014.1	0.819
MA0017.1	MA0017.1	0.524
MA0018.2	MA0018.2	0.0596
MA0019.1	MA0019.1	0.837
MA0024.1	MA0024.1	0.0742
MA0025.1	MA0025.1	0.579
MA0027.1	MA0027.1	0.304
MA0028.1	MA0028.1	0.0185
MA0029.1	MA0029.1	0.557
MA0030.1	MA0030.1	0.75
MA0031.1	MA0031.1	0.213
MA0035.2	MA0035.2	0.0708
MA0038.1	MA0038.1	0.676
MA0039.2	MA0039.2	0.382
MA0040.1	MA0040.1	0.944
MA0041.1	MA0041.1	0.889
MA0042.1	MA0042.1	0.881
MA0043.1	MA0043.1	0.63
MA0046.1	MA0046.1	0.249
MA0047.2	MA0047.2	0.0248
MA0048.1	MA0048.1	0.0962
MA0050.1	MA0050.1	0.969
MA0051.1	MA0051.1	0.553
MA0052.1	MA0052.1	0.00714
MA0055.1	MA0055.1	0.0345
MA0057.1	MA0057.1	0.0773
MA0058.1	MA0058.1	0.0273
MA0059.1	MA0059.1	0.0424
MA0060.1	MA0060.1	0.974
MA0061.1	MA0061.1	4.51664e-4
MA0062.2	MA0062.2	0.214
MA0065.2	MA0065.2	0.868
MA0066.1	MA0066.1	0.386
MA0067.1	MA0067.1	0.00942
MA0068.1	MA0068.1	0.236
MA0069.1	MA0069.1	0.601
MA0070.1	MA0070.1	0.76
MA0071.1	MA0071.1	0.77
MA0072.1	MA0072.1	0.532
MA0073.1	MA0073.1	0.949
MA0074.1	MA0074.1	0.972
MA0076.1	MA0076.1	0.049
MA0077.1	MA0077.1	0.407
MA0078.1	MA0078.1	0.514
MA0079.2	MA0079.2	0.244
MA0080.2	MA0080.2	2.50458e-13
MA0081.1	MA0081.1	0.062
MA0083.1	MA0083.1	0.00312
MA0084.1	MA0084.1	0.05
MA0087.1	MA0087.1	0.534
MA0088.1	MA0088.1	0.355
MA0090.1	MA0090.1	1.72715e-7
MA0091.1	MA0091.1	0.142
MA0092.1	MA0092.1	0.74
MA0093.1	MA0093.1	0.0641
MA0099.2	MA0099.2	0.203
MA0100.1	MA0100.1	0.294
MA0101.1	MA0101.1	0.0242
MA0102.2	MA0102.2	0.552
MA0103.1	MA0103.1	0.0416
MA0104.2	MA0104.2	0.605
MA0105.1	MA0105.1	6.82976e-7
MA0106.1	MA0106.1	0.231
MA0107.1	MA0107.1	0.0139
MA0108.2	MA0108.2	0.683
MA0111.1	MA0111.1	0.853
MA0112.2	MA0112.2	0.496
MA0113.1	MA0113.1	0.837
MA0114.1	MA0114.1	0.976
MA0115.1	MA0115.1	0.806
MA0116.1	MA0116.1	2.67376e-4
MA0117.1	MA0117.1	0.669
MA0119.1	MA0119.1	0.679
MA0122.1	MA0122.1	0.159
MA0124.1	MA0124.1	0.0921
MA0125.1	MA0125.1	0.632
MA0131.1	MA0131.1	0.877
MA0135.1	MA0135.1	0.632
MA0136.1	MA0136.1	4.05744e-10
MA0137.2	MA0137.2	0.123
MA0138.2	MA0138.2	0.065
MA0139.1	MA0139.1	0.227
MA0140.1	MA0140.1	0.874
MA0141.1	MA0141.1	0.325
MA0142.1	MA0142.1	0.0627
MA0143.1	MA0143.1	0.89
MA0144.1	MA0144.1	0.985
MA0145.1	MA0145.1	0.46
MA0146.1	MA0146.1	0.0603
MA0147.1	MA0147.1	0.448
MA0148.1	MA0148.1	0.247
MA0149.1	MA0149.1	0.847
MA0150.1	MA0150.1	0.0694
MA0152.1	MA0152.1	0.987
MA0153.1	MA0153.1	0.265
MA0154.1	MA0154.1	0.00188
MA0155.1	MA0155.1	0.519
MA0156.1	MA0156.1	0.00669
MA0157.1	MA0157.1	0.263
MA0159.1	MA0159.1	0.853
MA0160.1	MA0160.1	0.216
MA0162.1	MA0162.1	0.699
MA0163.1	MA0163.1	2.14382e-4
MA0164.1	MA0164.1	0.219
MA0258.1	MA0258.1	0.413
MA0259.1	MA0259.1	0.841

FANTOM5 phase1 novel unique motifsSummary:Association of the 169 novel and unique motifs discovered in FANTOM5 phase1 in this sample. Among the de-novo motifs discovered by DMF, HOMER,ChIPMunk, and ScanAll, only novel motifs are selected after comparison with known motif sets, and their clustering based on MACRO-APE resulted in169 novel and unique motifs. Their association to the promoter expression is evaluated in the same way to the JASPAR motif above Analyst: Michiel de Hoon link to dataset. data

library id: CNhs13073

Novel motif	Logo	P-value
1	1	0.191
10	10	0.0905
100	100	0.136
101	101	0.448
102	102	0.443
103	103	0.575
104	104	0.754
105	105	0.273
106	106	0.115
107	107	0.97
108	108	0.336
109	109	0.82
11	11	0.276
110	110	0.685
111	111	0.0213
112	112	0.118
113	113	0.0148
114	114	0.476
115	115	0.507
116	116	0.787
117	117	0.33
118	118	0.882
119	119	0.526
12	12	0.144
120	120	0.923
121	121	0.321
122	122	0.537
123	123	0.0806
124	124	0.131
125	125	0.322
126	126	0.248
127	127	0.664
128	128	0.023
129	129	0.608
13	13	0.649
130	130	0.903
131	131	0.576
132	132	0.566
133	133	0.438
134	134	0.0677
135	135	0.0115
136	136	0.161
137	137	0.127
138	138	0.67
139	139	0.00467
14	14	0.552
140	140	0.845
141	141	0.13
142	142	0.973
143	143	0.0537
144	144	0.936
145	145	0.00869
146	146	0.653
147	147	0.618
148	148	0.422
149	149	0.816
15	15	0.409
150	150	0.267
151	151	0.909
152	152	0.024
153	153	0.368
154	154	0.988
155	155	0.311
156	156	0.187
157	157	0.7
158	158	0.0274
159	159	0.193
16	16	0.778
160	160	0.63
161	161	0.887
162	162	0.465
163	163	0.141
164	164	0.0627
165	165	0.23
166	166	0.572
167	167	0.472
168	168	0.0891
169	169	0.451
17	17	0.507
18	18	0.297
19	19	0.163
2	2	0.801
20	20	0.804
21	21	0.688
22	22	0.979
23	23	0.163
24	24	0.68
25	25	0.567
26	26	0.379
27	27	0.886
28	28	0.784
29	29	0.256
3	3	0.197
30	30	0.657
31	31	0.85
32	32	0.337
33	33	0.967
34	34	0.769
35	35	0.0826
36	36	0.312
37	37	0.574
38	38	0.689
39	39	0.695
4	4	0.25
40	40	0.485
41	41	8.41784e-4
42	42	0.402
43	43	0.0296
44	44	0.979
45	45	0.557
46	46	0.252
47	47	0.868
48	48	1
49	49	0.011
5	5	0.0574
50	50	0.764
51	51	0.904
52	52	0.839
53	53	0.531
54	54	0.969
55	55	0.321
56	56	0.978
57	57	0.868
58	58	0.109
59	59	0.677
6	6	0.412
60	60	0.173
61	61	0.867
62	62	0.0482
63	63	0.525
64	64	0.385
65	65	0.232
66	66	0.639
67	67	0.167
68	68	0.947
69	69	0.686
7	7	0.387
70	70	0.101
71	71	0.862
72	72	0.387
73	73	0.202
74	74	0.692
75	75	0.419
76	76	0.487
77	77	0.636
78	78	0.238
79	79	0.574
8	8	0.81
80	80	0.0271
81	81	0.264
82	82	0.458
83	83	0.999
84	84	0.261
85	85	0.0439
86	86	0.0747
87	87	0.0811
88	88	0.26
89	89	0.996
9	9	0.136
90	90	0.0113
91	91	0.114
92	92	0.0376
93	93	0.897
94	94	0.304
95	95	0.414
96	96	0.0351
97	97	0.73
98	98	0.226
99	99	0.0083

de novo motifs identified by HOMER in promoters active in this sampleSummary:The result of HOMER in this sample is shown. Analyst:NA library id: CNhs13073

FANTOM5 (FF) ontology

Direct parent terms

is_a relathionship
EFO:0002091 biological replicate
FF:0000210 human sample
FF:0102424 mesothelioma cell line sample

Ancestor terms (non development)Summary:Connected ontology terms with is_a, part_of or located_in relationship Analyst: Hideya Kawaji link to source data data

CL: Cell type
0000000 (cell), 0000000 (cell)
0000003 (native cell)
0000548 (animal cell)
0000066 (epithelial cell)
0000076 (squamous epithelial cell)
0000213 (lining cell)
0000215 (barrier cell)
0000255 (eukaryotic cell)
0000077 (mesothelial cell)

DOID: Disease
4 (disease)
162 (cancer)
14566 (disease of cellular proliferation)

FF: FANTOM5
0000102 (sample by type)
0000003 (cell line sample)
0000210 (human sample)
0000101 (sample by species)
0000001 (sample)
0102424 (mesothelioma cell line sample)

Ancestor terms (development)Summary:Connected ontology terms with develops_from, derives_from or preceded_by relationship Analyst: Hideya Kawaji link to source data data
CL:0000222 (mesodermal cell)

@@ Line 1: / Line 1: @@
 {{f5samples
+|DRA_sample_Accession=CAGE@SAMD00005521
+|accession_numbers=CAGE;DRX007945;DRR008817;DRZ000242;DRZ001627;DRZ011592;DRZ012977
 |ancestors_in_anatomy_facet=
 |ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000548,CL:0000066,CL:0000076,CL:0000213,CL:0000215,CL:0000255,CL:0000077
@@ Line 7: / Line 9: @@
 |created_by=
 |creation_date=
-|datafreeze_phase=1
+|data_phase=2
+|datafreeze_phase=2
 |def=
 |expression_enrichment_score=chr1:197886461..197886558,+!p1@LHX9!2.21!159.64!LHX9;;chr17:26697276..26697303,-!p2@SEBOX,p2@VTN!2.01!101.09!SEBOX;;chr11:61520075..61520136,+!p1@C11orf9!1.78!122.14!C11orf9;;chr6:10412600..10412637,-!p1@TFAP2A!1.71!81.57!TFAP2A;;chr6:10415276..10415341,-!p2@TFAP2A!1.69!57.67!TFAP2A;;chr15:83953397..83953425,-!p1@BNC1!1.67!52.85!BNC1;;chr17:26697304..26697335,-!p1@SEBOX,p1@VTN!1.67!45.83!SEBOX;;chr6:126240380..126240430,+!p2@NCOA7!1.51!79.82!NCOA7;;chr21:38071430..38071456,+!p1@SIM2!1.49!30.04!SIM2;;chr7:27153454..27153469,-!p2@HOXA3!1.45!26.97!HOXA3;;chr8:37963466..37963506,+!p3@ASH2L!1.37!27.85!ASH2L;;chr17:26697257..26697268,-!p3@SEBOX,p3@VTN!1.36!22.15!SEBOX;;chr18:19749541..19749557,+!p1@GATA6!1.33!62.93!GATA6;;chr18:19749386..19749404,+!p2@GATA6!1.28!25.66!GATA6;;chr6:10412392..10412409,-!p4@TFAP2A!1.25!19.30!TFAP2A;;chr7:1577899..1577943,+!p3@MAFK!1.23!16.01!MAFK;;chr12:54380404..54380433,+!p3@HOXC10!1.20!14.69!HOXC10;;chr6:126240356..126240379,+!p7@NCOA7!1.15!16.23!NCOA7;;chr1:201979703..201979721,+!p2@ELF3!1.12!12.06!ELF3;;chr20:2673383..2673441,+!p1@EBF4!1.09!18.20!EBF4;;chr1:201979743..201979762,+!p1@ELF3!1.09!11.18!ELF3;;chr8:37963407..37963454,+!p2@ASH2L!1.06!31.36!ASH2L;;chr16:79633894..79633954,-!p3@MAF!1.06!20.17!MAF;;chr5:134369905..134369972,-!p1@PITX1!1.06!16.01!PITX1;;chr15:80696703..80696754,+!p1@ARNT2!1.06!14.03!ARNT2;;chr1:164528410..164528428,+!p1@PBX1!1.05!78.28!PBX1;;chr16:67881588..67881612,-!p2@CENPT!1.03!13.38!CENPT;;chr17:46682321..46682362,-!p1@HOXB6!1.03!9.65!HOXB6;;chr6:10415484..10415508,-!p3@TFAP2A!1.03!9.65!TFAP2A;;chr7:27183263..27183284,-!p2@HOXA5!1.03!9.65!HOXA5;;chr21:38071403..38071428,+!p2@SIM2!1.03!9.65!SIM2;;chr6:1312325..1312340,+!p1@FOXQ1!1.02!15.57!FOXQ1;;chr5:3595977..3595999,+!p1@IRX1!1.02!9.43!IRX1;;chr5:92919100..92919135,+!p3@NR2F1!1.01!11.40!NR2F1;;chr6:28321909..28321965,-!p3@ZNF323!1.01!9.21!ZNF323;;chr7:27196267..27196311,-!p1@HOXA7!1.00!8.99!HOXA7;;chr4:188916918..188916942,+!p1@ZFP42!1.00!8.99!ZFP42;;chr7:27183291..27183324,-!p1@HOXA5!0.99!8.77!HOXA5;;chr8:11561684..11561751,+!p1@GATA4!0.99!8.77!GATA4;;chr6:10412576..10412599,-!p5@TFAP2A!0.98!8.55!TFAP2A;;chr1:158985493..158985535,+!p4@IFI16!0.96!12.72!IFI16;;chr6:85473156..85473210,-!p2@TBX18!0.96!9.87!TBX18;;chr20:50721803..50721857,-!p2@ZFP64!0.94!12.28!ZFP64;;chr6:1389789..1389821,+!p1@FOXF2!0.94!10.74!FOXF2;;chr15:83953373..83953386,-!p2@BNC1!0.94!7.67!BNC1;;chr12:54332608..54332636,+!p1@HOXC13!0.94!7.67!HOXC13;;chrY:21906594..21906622,-!p1@KDM5D!0.94!7.67!KDM5D;;chr17:46703687..46703740,-!p1@HOXB9!0.93!7.46!HOXB9;;chr7:27170359..27170381,-!p1@HOXA4!0.93!7.46!HOXA4;;chr12:54402745..54402788,+!p1@HOXC8!0.93!7.46!HOXC8;;chr7:35293685..35293718,-!p1@TBX20!0.90!7.02!TBX20;;chr7:27142290..27142310,-!p1@HOXA2!0.89!6.80!HOXA2;;chr21:36421535..36421610,-!p2@RUNX1!0.88!24.78!RUNX1;;chr5:2751762..2751784,-!p1@IRX2!0.88!6.58!IRX2;;chr5:3595934..3595957,+!p2@IRX1!0.88!6.58!IRX1;;chr1:164528445..164528459,+!p2@PBX1!0.87!20.83!PBX1;;chr18:19749517..19749531,+!p3@GATA6!0.86!11.40!GATA6;;chr19:13134772..13134822,+!p2@NFIX!0.84!8.99!NFIX;;chr21:38071462..38071474,+!p3@SIM2!0.84!5.92!SIM2;;chr7:27153428..27153440,-!p3@HOXA3!0.84!5.92!HOXA3;;chr7:27169801..27169844,-!p2@HOXA4!0.84!5.92!HOXA4;;chr10:28034739..28034756,-!p1@MKX!0.84!5.92!MKX;;chr16:79634595..79634620,-!p2@MAF!0.83!10.96!MAF;;chr6:134210243..134210257,+!p1@TCF21!0.83!5.70!TCF21;;chr20:42295745..42295765,+!p1@MYBL2!0.82!98.90!MYBL2;;chr16:79634624..79634642,-!p1@MAF!0.82!23.46!MAF;;chr6:85474299..85474324,-!p1@TBX18!0.81!10.31!TBX18;;chr4:111558135..111558198,-!p2@PITX2!0.81!5.48!PITX2;;chr2:239756671..239756732,+!p1@TWIST2!0.80!18.20!TWIST2;;chr11:46299539..46299620,+!p2@CREB3L1!0.80!9.43!CREB3L1;;chr1:164528911..164528940,+!p7@PBX1!0.80!8.11!PBX1;;chr17:46687959..46688007,-!p2@HOXB7!0.80!7.46!HOXB7;;chr6:28321971..28321995,-!p1@ZNF323!0.80!5.26!ZNF323;;chr7:1577076..1577095,+!p5@MAFK!0.80!5.26!MAFK;;chr1:197886665..197886732,+!p3@LHX9!0.80!5.26!LHX9;;chr5:92918919..92918942,+!p1@NR2F1!0.79!24.78!NR2F1;;chr2:19558373..19558392,-!p1@OSR1!0.79!15.13!OSR1;;chr12:104531823..104531849,-!p5@NFYB!0.78!10.96!NFYB;;chr6:126240463..126240489,+!p6@NCOA7!0.78!5.70!NCOA7;;chr12:54410664..54410684,+!p1@HOXC4,p1@HOXC5,p1@HOXC6!0.78!5.04!HOXC5;;chr13:73633131..73633149,+!p1@KLF5!0.77!56.79!KLF5;;chr7:27153613..27153630,-!p6@HOXA3!0.77!4.82!HOXA3;;chr7:27190547..27190591,-!p1@HOXA6!0.77!4.82!HOXA6;;chr6:21597765..21597779,+!p2@SOX4!0.76!42.32!SOX4;;chr11:46299199..46299233,+!p1@CREB3L1!0.76!26.75!CREB3L1;;chr21:47063625..47063658,+!p1@PCBP3!0.76!22.59!PCBP3;;chr12:124873357..124873401,-!p1@NCOR2!0.75!59.86!NCOR2;;chr8:72756063..72756125,-!p1@MSC!0.75!10.09!MSC;;chr6:126240442..126240459,+!p4@NCOA7!0.75!6.14!NCOA7;;chr15:80843484..80843499,+!p5@ARNT2!0.75!4.60!ARNT2;;chrY:2803415..2803468,+!p1@ZFY!0.75!4.60!ZFY;;chr2:176994408..176994492,+!p1@HOXD8!0.75!4.60!HOXD8;;chr6:19837592..19837621,+!p1@ID4!0.74!30.48!ID4;;chr3:114343768..114343822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@@ Line 38: / Line 41: @@
 |fonse_treatment_closure=
 |has_quality=
+|hg19bam=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.cell_line.hCAGE/mesothelioma%2520cell%2520line%253aMero-95.CNhs13073.10856-111G1.hg19.nobarcode.bam
+|hg19ctss=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.cell_line.hCAGE/mesothelioma%2520cell%2520line%253aMero-95.CNhs13073.10856-111G1.hg19.ctss.bed.gz
+|hg19fasta=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.cell_line.hCAGE/mesothelioma%2520cell%2520line%253aMero-95.CNhs13073.10856-111G1.hg19.nobarcode.rdna.fa.gz
+|hg38bam=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.cell_line.hCAGE/mesothelioma%2520cell%2520line%253aMero-95.CNhs13073.10856-111G1.hg38.nobarcode.bam
+|hg38ctss=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.cell_line.hCAGE/mesothelioma%2520cell%2520line%253aMero-95.CNhs13073.10856-111G1.hg38.nobarcode.ctss.bed.gz
 |id=FF:10856-111G1
 |is_a=EFO:0002091;;FF:0000210;;FF:0102424
 |is_obsolete=
+|library_id=CNhs13073
+|library_id_phase_based=2:CNhs13073
+|microRNAs=
+|microRNAs_nn=
+|microRNAs_nonnovel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer/#/human#cage;sample;10856
+|microRNAs_novel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer_novel/#/human#cage;sample;10856
 |name=mesothelioma cell line:Mero-95
 |namespace=FANTOM5
@@ Line 46: / Line 60: @@
 |profile_cagescan=,,,
 |profile_hcage=CNhs13073,LSID1000,release012,COMPLETED
-|profile_rnaseq=,,,
+|profile_rnaseq=
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@@ Line 63: / Line 78: @@
 |rna_weight_ug=105.7
 |sample_age=unknown
+|sample_category=cell lines
 |sample_cell_catalog=9100108
 |sample_cell_line=Mero-95
@@ Line 84: / Line 100: @@
 |top_motifs=bHLH_family:1.83514996867;HOX{A5,B5}:1.58362781535;GZF1:1.26147194293;TEAD1:1.20760922509;HSF1,2:1.16506423154;LMO2:1.12312772388;ZNF384:1.1217271027;AIRE:1.06091608843;XCPE1{core}:1.01592574859;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:0.954866789291;TEF:0.858554019136;TOPORS:0.772013373012;PAX6:0.755415254397;POU1F1:0.712330415982;EP300:0.693763402898;NR3C1:0.670748046672;ADNP_IRX_SIX_ZHX:0.662733083085;ELK1,4_GABP{A,B1}:0.657166097656;PAX4:0.644117106719;E2F1..5:0.643489038946;TFAP2B:0.559056593587;EVI1:0.554678789293;TP53:0.531574334237;NFE2L1:0.527238781737;TLX1..3_NFIC{dimer}:0.519419094362;ARID5B:0.4955181904;ZEB1:0.486437353429;EBF1:0.45376051929;FOXM1:0.451276948367;STAT2,4,6:0.439889563846;LHX3,4:0.415550088054;ZNF423:0.404250690154;UFEwm:0.379290320955;RXR{A,B,G}:0.367185509583;SPZ1:0.357158356381;SNAI1..3:0.322456282055;HLF:0.318108461859;PAX1,9:0.302651484347;ZNF143:0.298725074217;MAZ:0.265706158123;HNF4A_NR2F1,2:0.259916050374;GLI1..3:0.254690865869;STAT1,3:0.24021279424;EN1,2:0.23815572277;ZBTB16:0.23559580016;ESR1:0.234066209815;RFX1:0.224316560843;HIF1A:0.218849882034;PRRX1,2:0.205063523591;HIC1:0.199071555398;SOX17:0.190067749432;GFI1B:0.184895416586;MTE{core}:0.183037686787;LEF1_TCF7_TCF7L1,2:0.158969631244;TFDP1:0.158264314851;PAX5:0.155483547716;NR6A1:0.148306694766;GTF2A1,2:0.145989079072;SMAD1..7,9:0.133486109922;MTF1:0.124974712805;SP1:0.121645359418;NKX6-1,2:0.118407781465;GFI1:0.113464905306;NRF1:0.102253204471;SREBF1,2:0.0976915841994;SOX2:0.0906987714527;REST:0.0852615132364;IRF7:0.0844715448407;ESRRA:0.0778122628943;ATF4:0.0775266070125;NKX3-2:0.0732915143289;IKZF1:0.0686810089592;NFY{A,B,C}:0.0629437909324;KLF4:0.0602928479021;PRDM1:0.0585159424107;TFAP2{A,C}:0.0482926938342;TAL1_TCF{3,4,12}:0.0371234047645;ONECUT1,2:0.0358383266148;PAX8:0.0350408332996;ZBTB6:0.0342990465229;GATA4:0.0286400842479;NKX3-1:0.0110088049255;GTF2I:0.00860806276193;TFCP2:0.00386010659258;MZF1:-0.0171936724841;TBP:-0.0254436296187;EGR1..3:-0.0370709960564;POU5F1:-0.0423065548584;HNF1A:-0.0529462064882;BACH2:-0.0636547234248;MAFB:-0.0669302699319;HES1:-0.0701085659648;CEBPA,B_DDIT3:-0.0843121154837;TLX2:-0.0845762611806;FOSL2:-0.0963190892463;FOXQ1:-0.101653014062;FOX{D1,D2}:-0.117038767489;IRF1,2:-0.119449448371;FOS_FOS{B,L1}_JUN{B,D}:-0.145659145122;DMAP1_NCOR{1,2}_SMARC:-0.149202066707;CDC5L:-0.152195280793;BREu{core}:-0.153759226574;ZNF148:-0.176883504825;RREB1:-0.193469981532;PPARG:-0.195564647674;MYBL2:-0.195698085156;MED-1{core}:-0.196211490916;NFATC1..3:-0.20077885698;HMX1:-0.201025749824;NFE2:-0.20489081933;FOXD3:-0.217705616109;HMGA1,2:-0.230538885955;PATZ1:-0.236868569772;ZIC1..3:-0.240662459209;GATA6:-0.261259303154;STAT5{A,B}:-0.271524832147;FOXP1:-0.29828038848;NFE2L2:-0.301335978124;NFKB1_REL_RELA:-0.306149394593;CDX1,2,4:-0.333010081352;PBX1:-0.334857966657;AR:-0.334910912905;IKZF2:-0.340981365948;NFIL3:-0.343525256278;OCT4_SOX2{dimer}:-0.344281759668;FOXL1:-0.357838222948;MYFfamily:-0.366529180174;ATF2:-0.406180776959;ATF6:-0.410043440242;YY1:-0.416171985042;GCM1,2:-0.432756122712;HOX{A4,D4}:-0.436232115075;FOX{I1,J2}:-0.437779951753;POU3F1..4:-0.446868502327;DBP:-0.446931769671;MEF2{A,B,C,D}:-0.454615811959;MYOD1:-0.458736485314;RUNX1..3:-0.468273044175;ZFP161:-0.469978828806;SPIB:-0.471152979239;RFX2..5_RFXANK_RFXAP:-0.491204839007;ELF1,2,4:-0.511726034909;FOX{F1,F2,J1}:-0.520691669612;RORA:-0.524865665699;NHLH1,2:-0.53639174351;PITX1..3:-0.53933975871;NANOG{mouse}:-0.539886767326;HBP1_HMGB_SSRP1_UBTF:-0.544975358007;MYB:-0.55057960158;ALX4:-0.550843535662;AHR_ARNT_ARNT2:-0.560726551018;CUX2:-0.564048257199;T:-0.572115590796;RXRA_VDR{dimer}:-0.58488262901;ETS1,2:-0.604496301086;RBPJ:-0.618352149182;SOX{8,9,10}:-0.634330272472;ALX1:-0.646285583651;TBX4,5:-0.657086678673;HAND1,2:-0.660145673271;SPI1:-0.663311014404;ZNF238:-0.667016614725;ATF5_CREB3:-0.671231922346;NKX2-3_NKX2-5:-0.672234778955;CRX:-0.677047447753;FOXN1:-0.685535082288;PAX2:-0.716612040848;RXR{A,B,G}_{NR1H2,PPAR}dimers:-0.732665754197;POU2F1..3:-0.738828685354;NANOG:-0.749339801726;SRF:-0.756551421936;TFAP4:-0.775657537487;NR1H4:-0.791587316904;FOXP3:-0.796607196217;XBP1:-0.812869933755;BPTF:-0.823982228714;HOX{A6,A7,B6,B7}:-0.83407877149;FOXO1,3,4:-0.859243649636;PAX3,7:-0.864678639507;VSX1,2:-0.90894413886;SOX5:-0.914499820377;NKX2-2,8:-0.927053356146;CREB1:-0.955556561189;NFIX:-1.00460983252;NKX2-1,4:-1.01355919338;FOXA2:-1.0274476094;HOXA9_MEIS1:-1.03184800167;NR5A1,2:-1.06007623152;POU6F1:-1.09104837311;JUN:-1.16006784916;TGIF1:-1.18971100605;PDX1:-1.57387268234
 |xref=
+|zenbu_report=https://fantom.gsc.riken.jp/zenbu/reports/#miRNA_expression_atlas_human;search_select_hide=table111:FF:10856-111G1;search_select_hide=table117:FF:10856-111G1
 }}

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FF:10856-111G1: Difference between revisions

From FANTOM5_SSTAR

Latest revision as of 16:24, 3 June 2020

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	Mozilla Cavendish skin modified by DaSch for the Web Community Wiki GitHub project page – Report a bug – Skin version: 2.6.0