FFCP PHASE1:Hg19::chr5:176074396..176074417,+: Difference between revisions
From FANTOM5_SSTAR
(Created page with "{{FFCP
|id=chr5:176074396..176074417,+
|short_description=p2@TSPAN17
|description=CAGE_peak_2_at_TSPAN17_5end
|association_with_transcript=8bp_to_ENST00000310032,ENST00000...") |
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{{FFCP | {{FFCP | ||
| | |DHSsupport=supported | ||
| | |DPIdataset=robust | ||
|EntrezGene=26262 | |EntrezGene=26262 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=13594 | |HGNC=13594 | ||
|TSSclassifier=strong | |||
|UniProt=Q96FV3,C9J7R4 | |UniProt=Q96FV3,C9J7R4 | ||
|association_with_transcript=8bp_to_ENST00000310032,ENST00000405525,NM_001006616,NM_012171,NM_130465,uc003mes.3,uc003met.2,uc003meu.2,uc003mev.2,uc003mew.2_5end | |||
|cluster_id=chr5:176074396..176074417,+ | |||
|description=CAGE_peak_2_at_TSPAN17_5end | |||
|id=chr5:176074396..176074417,+ | |||
|ontology_enrichment_celltype= | |||
|ontology_enrichment_celltype_v019= | |||
|ontology_enrichment_celltype_v019_2= | |||
|ontology_enrichment_development_v019= | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0001869!7.71e-11!32;UBERON:0000064!2.88e-10!219;UBERON:0002020!4.48e-10!34;UBERON:0003528!4.48e-10!34;UBERON:0001893!1.04e-09!34;UBERON:0001049!1.09e-09!57;UBERON:0005068!1.09e-09!57;UBERON:0006241!1.09e-09!57;UBERON:0007135!1.09e-09!57;UBERON:0002780!1.79e-09!41;UBERON:0001890!1.79e-09!41;UBERON:0006240!1.79e-09!41;UBERON:0000956!2.82e-09!25;UBERON:0000203!2.82e-09!25;UBERON:0003075!2.92e-09!86;UBERON:0007284!2.92e-09!86;UBERON:0002791!2.94e-09!33;UBERON:0002619!3.18e-09!22;UBERON:0002616!3.49e-09!59;UBERON:0003080!7.67e-09!42;UBERON:0002346!1.81e-08!90;UBERON:0001017!2.03e-08!82;UBERON:0005743!2.64e-08!86;UBERON:0000955!3.29e-08!69;UBERON:0006238!3.29e-08!69;UBERON:0001950!3.41e-08!20;UBERON:0003056!9.25e-08!61;UBERON:0000073!1.73e-07!94;UBERON:0001016!1.73e-07!94;UBERON:0004121!8.84e-07!169 | |||
|ontology_enrichment_uberon_v019=UBERON:0001869;6.71e-10;32!UBERON:0002791;2.20e-09;32!UBERON:0000956;2.94e-09;25!UBERON:0000203;2.94e-09;25!UBERON:0002619;5.65e-09;22!UBERON:0003528;8.74e-09;34!UBERON:0002020;8.74e-09;34!UBERON:0001893;1.41e-08;34!UBERON:0001950;6.77e-08;20!UBERON:0002780;1.83e-07;41!UBERON:0001890;1.83e-07;41 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0000073,3.51e-11,53;UBERON:0002616,3.51e-11,53;UBERON:0001869,4.97e-11,32;UBERON:0010371,5.83e-11,104;UBERON:0001049,1.63e-10,56;UBERON:0005068,1.63e-10,56;UBERON:0006241,1.63e-10,56;UBERON:0007135,1.63e-10,56;UBERON:0003528,3.00e-10,34;UBERON:0002020,3.00e-10,34;UBERON:0002791,4.15e-10,32;UBERON:0001893,9.69e-10,34;UBERON:0002780,1.13e-09,41;UBERON:0001890,1.13e-09,41;UBERON:0003080,1.13e-09,41;UBERON:0006240,1.13e-09,41;UBERON:0003075,1.65e-09,82;UBERON:0007284,1.65e-09,82;UBERON:0000956,1.96e-09,25;UBERON:0000203,1.96e-09,25;UBERON:0002619,2.21e-09,22;UBERON:0001017,4.81e-09,81;UBERON:0000955,6.80e-09,68;UBERON:0006238,6.80e-09,68;UBERON:0002346,1.36e-08,86;UBERON:0003056,1.76e-08,61;UBERON:0001950,2.49e-08,20;UBERON:0001016,4.78e-08,89 | |||
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| ||
|short_description=p2@TSPAN17 | |||
}} | }} |
Latest revision as of 05:05, 17 September 2015
Short description: | p2@TSPAN17 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_2_at_TSPAN17_5end |
Coexpression cluster: | NA |
Association with transcript: | 8bp_to_ENST00000310032, ENST00000405525, NM_001006616, NM_012171, NM_130465, uc003mes.3, uc003met.2, uc003meu.2, uc003mev.2, uc003mew.2_5end |
EntrezGene: | TSPAN17 |
HGNC: | 13594 |
UniProt: | Q96FV3C9J7R4 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
regional part of nervous system | 3.51e-11 | 53 |
regional part of brain | 3.51e-11 | 53 |
cerebral hemisphere | 4.97e-11 | 32 |
ecto-epithelium | 5.83e-11 | 104 |
neural tube | 1.63e-10 | 56 |
neural rod | 1.63e-10 | 56 |
future spinal cord | 1.63e-10 | 56 |
neural keel | 1.63e-10 | 56 |
brain grey matter | 3.00e-10 | 34 |
gray matter | 3.00e-10 | 34 |
regional part of telencephalon | 4.15e-10 | 32 |
telencephalon | 9.69e-10 | 34 |
regional part of forebrain | 1.13e-09 | 41 |
forebrain | 1.13e-09 | 41 |
anterior neural tube | 1.13e-09 | 41 |
future forebrain | 1.13e-09 | 41 |
neural plate | 1.65e-09 | 82 |
presumptive neural plate | 1.65e-09 | 82 |
cerebral cortex | 1.96e-09 | 25 |
pallium | 1.96e-09 | 25 |
regional part of cerebral cortex | 2.21e-09 | 22 |
central nervous system | 4.81e-09 | 81 |
brain | 6.80e-09 | 68 |
future brain | 6.80e-09 | 68 |
neurectoderm | 1.36e-08 | 86 |
pre-chordal neural plate | 1.76e-08 | 61 |
neocortex | 2.49e-08 | 20 |
nervous system | 4.78e-08 | 89 |