FFCP PHASE1:Hg19::chr6:32610846..32610863,+: Difference between revisions
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(Created page with "{{FFCP
|id=chr6:32610846..32610863,+
|short_description=p5@HLA-DQA1
|description=CAGE_peak_5_at_HLA-DQA1_5end
|association_with_transcript=349bp_to_AF533895,AF533896,AF533...") |
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{{FFCP | {{FFCP | ||
| | |DHSsupport=supported | ||
| | |DPIdataset=robust | ||
|EntrezGene=3117 | |EntrezGene=3117 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=no_gencodeV16_or_build2_transcript | |||
|HGNC=4942 | |HGNC=4942 | ||
|TSSclassifier=strong | |||
|UniProt=Q8MH45,Q8MH44,Q8MH43,Q8MH39,Q8MH03,Q8MH02,Q8MH01 | |UniProt=Q8MH45,Q8MH44,Q8MH43,Q8MH39,Q8MH03,Q8MH02,Q8MH01 | ||
|association_with_transcript=349bp_to_AF533895,AF533896,AF533897,AF533901,AF533937,AF533938,AF533939_5end | |||
|cluster_id=chr6:32610846..32610863,+ | |||
|coexpression_cluster_id=C61 | |||
|description=CAGE_peak_5_at_HLA-DQA1_5end | |||
|id=chr6:32610846..32610863,+ | |||
|ontology_enrichment_celltype=CL:0000738!1.17e-53!140;CL:0002087!6.10e-52!119;CL:0002031!2.34e-47!124;CL:0000988!6.11e-43!182;CL:0000037!1.37e-42!172;CL:0000566!1.37e-42!172;CL:0002032!4.12e-40!165;CL:0000837!4.12e-40!165;CL:0002009!2.55e-29!65;CL:0002194!5.29e-27!63;CL:0000576!5.29e-27!63;CL:0000040!5.29e-27!63;CL:0000559!5.29e-27!63;CL:0002057!2.30e-26!42;CL:0000557!1.05e-25!71;CL:0000860!6.52e-24!45;CL:0000839!4.90e-23!70;CL:0000542!5.55e-22!53;CL:0000051!5.55e-22!53;CL:0000766!1.81e-21!76;CL:0000838!7.36e-21!52;CL:0000945!1.71e-19!24;CL:0000826!1.71e-19!24;CL:0000763!2.62e-18!112;CL:0000049!2.62e-18!112;CL:0000451!1.09e-13!10;CL:0000236!2.86e-12!14;CL:0000990!1.23e-11!8;CL:0000134!8.31e-10!358;CL:0002320!3.36e-09!365;CL:0000453!3.83e-09!5;CL:0000219!1.79e-07!390;CL:0000840!4.40e-07!5;CL:0001029!4.40e-07!5 | |||
|ontology_enrichment_celltype_v019=CL:0000945;5.06e-26;24!CL:0000860;2.17e-25;33!CL:0002057;2.17e-25;33!CL:0000576;1.56e-22;48!CL:0000473;3.87e-20;39!CL:0000234;3.87e-20;39!CL:0000236;4.12e-20;13!CL:0000990;5.20e-20;8!CL:0002087;7.79e-18;104!CL:0000451;4.39e-16;10!CL:0000738;2.61e-15;136!CL:0000453;4.01e-15;5!CL:0000766;2.49e-14;69!CL:0000542;6.60e-14;53!CL:0000840;8.09e-12;5!CL:0000988;7.80e-10;177!CL:0000219;1.61e-07;193!CL:0002393;2.22e-07;6!CL:0002397;2.22e-07;6 | |||
|ontology_enrichment_celltype_v019_2=CL:0000738,1.04e-62,136;CL:0002087,2.21e-62,115;CL:0002031,3.97e-57,120;CL:0000988,2.64e-52,177;CL:0000037,7.70e-50,168;CL:0002032,7.31e-49,161;CL:0000837,7.31e-49,161;CL:0002009,2.75e-43,61;CL:0002194,2.69e-39,59;CL:0000576,2.69e-39,59;CL:0000040,2.69e-39,59;CL:0000559,2.69e-39,59;CL:0000557,1.29e-38,67;CL:0000473,1.37e-35,48;CL:0000234,1.37e-35,48;CL:0000860,4.27e-35,42;CL:0002057,4.27e-35,42;CL:0000839,3.07e-34,66;CL:0000766,1.11e-30,72;CL:0000763,3.26e-27,108;CL:0000049,3.26e-27,108;CL:0000945,4.37e-26,24;CL:0000826,4.37e-26,24;CL:0000990,5.22e-20,8;CL:0000542,1.17e-19,53;CL:0000051,1.17e-19,53;CL:0000236,1.53e-18,14;CL:0000838,4.10e-18,52;CL:0000451,4.40e-16,10;CL:0000134,6.45e-16,354;CL:0002320,2.53e-15,361;CL:0000453,3.80e-15,5;CL:0000219,3.08e-13,386;CL:0000840,8.01e-12,5;CL:0001029,8.01e-12,5;CL:0000048,1.06e-10,427;CL:0000723,2.36e-10,433;CL:0002393,3.56e-10,9;CL:0002397,3.56e-10,9;CL:0000034,6.65e-10,441 | |||
|ontology_enrichment_development_v019=CL:0002057;1.09e-25;42!CL:0000051;6.60e-14;53!CL:0000049;2.06e-09;108 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0002390!1.06e-32!102;UBERON:0003061!1.06e-32!102;UBERON:0002193!3.00e-29!112;UBERON:0002371!1.77e-22!80;UBERON:0001474!5.54e-20!86;UBERON:0002405!2.90e-19!115;UBERON:0004765!5.75e-16!101;UBERON:0001434!5.75e-16!101;UBERON:0003081!5.60e-10!216;UBERON:0002384!8.49e-09!375;UBERON:0000178!9.65e-07!15;UBERON:0000179!9.65e-07!15;UBERON:0000463!9.65e-07!15 | |||
|ontology_enrichment_uberon_v019=UBERON:0000178;9.64e-10;15!UBERON:0000179;9.64e-10;15!UBERON:0000463;9.64e-10;15 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002390,1.69e-42,98;UBERON:0003061,1.69e-42,98;UBERON:0002193,1.64e-37,108;UBERON:0002371,5.59e-33,76;UBERON:0001474,6.60e-30,82;UBERON:0002405,8.74e-29,93;UBERON:0004765,1.90e-26,90;UBERON:0001434,6.65e-23,100;UBERON:0003081,1.25e-16,203;UBERON:0002384,1.63e-14,371;UBERON:0002204,2.99e-10,167;UBERON:0000178,8.31e-10,15;UBERON:0000179,8.31e-10,15;UBERON:0000463,8.31e-10,15;UBERON:0000926,7.13e-07,315;UBERON:0004120,7.13e-07,315;UBERON:0006603,7.13e-07,315 | |||
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|short_description=p5@HLA-DQA1 | |||
}} | }} |
Latest revision as of 03:37, 18 September 2015
Short description: | p5@HLA-DQA1 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_5_at_HLA-DQA1_5end |
Coexpression cluster: | C61_migratory_Dendritic_immature_Macrophage_xeroderma_cord_b |
Association with transcript: | 349bp_to_AF533895, AF533896, AF533897, AF533901, AF533937, AF533938, AF533939_5end |
EntrezGene: | HLA-DQA1 |
HGNC: | 4942 |
UniProt: | Q8MH45Q8MH44Q8MH43Q8MH39Q8MH03Q8MH02Q8MH01 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
hematopoietic system | 1.69e-42 | 98 |
blood island | 1.69e-42 | 98 |
hemolymphoid system | 1.64e-37 | 108 |
bone marrow | 5.59e-33 | 76 |
bone element | 6.60e-30 | 82 |
immune system | 8.74e-29 | 93 |
skeletal element | 1.90e-26 | 90 |
skeletal system | 6.65e-23 | 100 |
lateral plate mesoderm | 1.25e-16 | 203 |
connective tissue | 1.63e-14 | 371 |
musculoskeletal system | 2.99e-10 | 167 |
blood | 8.31e-10 | 15 |
haemolymphatic fluid | 8.31e-10 | 15 |
organism substance | 8.31e-10 | 15 |
mesoderm | 7.13e-07 | 315 |
mesoderm-derived structure | 7.13e-07 | 315 |
presumptive mesoderm | 7.13e-07 | 315 |