FFCP PHASE1:Mm9::chr11:35358024..35358067,+: Difference between revisions
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{{FFCP|EntrezGene=20564|HGNC=|MCL_coexpression_id=114|UniProt=|association_with_transcript=-119bp_to_ENSMUST00000124438_5end|description=CAGE_peak_4_at_Slit3_5end|id=chr11:35358024..35358067,+|ontology_enrichment_celltype=CL:0000540!8.41e-10!33;CL:0000047!8.41e-10!33;CL:0000031!8.41e-10!33;CL:0000404!8.41e-10!33;CL:0000107!4.59e-08!9|ontology_enrichment_celltype_v019_2=CL:0000540,1.13e-12,33;CL:0000047,1.13e-12,33;CL:0000031,1.13e-12,33;CL:0000404,1.13e-12,33;CL:0000107,2.72e-10,9;CL:0000393,2.63e-09,39;CL:0000211,2.63e-09,39;CL:0002319,1.21e-07,43;CL:0000221,2.78e-07,44;CL:0000133,2.78e-07,44|ontology_enrichment_disease=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=UBERON:0001017!5.55e-14!73;UBERON:0005743!5.55e-14!73;UBERON:0004121!5.80e-14!102;UBERON:0000924!5.80e-14!102;UBERON:0006601!5.80e-14!102;UBERON:0002346!1.30e-13!71;UBERON:0003075!1.30e-13!71;UBERON:0007284!1.30e-13!71;UBERON:0000073!2.70e-13!75;UBERON:0001016!2.70e-13!75;UBERON:0001049!6.93e-09!52;UBERON:0005068!6.93e-09!52;UBERON:0006241!6.93e-09!52;UBERON:0007135!6.93e-09!52;UBERON:0002410!4.59e-08!9;UBERON:0002342!5.49e-08!10;UBERON:0005062!5.49e-08!10;UBERON:0000468!1.42e-07!333;UBERON:0000955!1.85e-07!50;UBERON:0006238!1.85e-07!50;UBERON:0002616!3.24e-07!49|ontology_enrichment_uberon_v019_2=UBERON:0001017,1.78e-19,73;UBERON:0001016,1.85e-18,75;UBERON:0000073,8.26e-13,54;UBERON:0001049,7.72e-12,52;UBERON:0005068,7.72e-12,52;UBERON:0006241,7.72e-12,52;UBERON:0007135,7.72e-12,52;UBERON:0004121,2.27e-11,95;UBERON:0000924,2.27e-11,95;UBERON:0006601,2.27e-11,95;UBERON:0002346,7.37e-11,64;UBERON:0003075,7.37e-11,64;UBERON:0007284,7.37e-11,64;UBERON:0002410,2.72e-10,9;UBERON:0010314,1.90e-08,92;UBERON:0000955,2.28e-08,47;UBERON:0006238,2.28e-08,47;UBERON:0002616,4.71e-08,46;UBERON:0010371,5.49e-08,73;UBERON:0003080,8.77e-08,40;UBERON:0000010,8.82e-08,11;UBERON:0002780,2.50e-07,39;UBERON:0001890,2.50e-07,39;UBERON:0006240,2.50e-07,39;UBERON:0002369,2.59e-07,7;UBERON:0006858,2.59e-07,7;UBERON:0000007,4.05e-07,8;UBERON:0003296,4.05e-07,8;UBERON:0010133,4.05e-07,8|phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.333109761815663,0.202475267389826,0,0,0,0,1.27564935226605,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,4.45096213891115,4.23192783417626,0.633831403506179,0,0,0,0,0,0,0,0,0,0,12.8542942981712,11.9269012113871,0.367472397644862,0.191690942036473,0,6.60695285996332,4.08599481872601,3.84016333140609,2.2420668914133,2.65314166446988,1.04182674111352,6.42120897703176,2.25105044012672,1.98637722109853,7.07108605136802,9.11178757114259,13.047961207771,0,0.226714680320357,0,0,0.679971333707751,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.34255163915718,0,11.4300447079915,22.2061218260654,22.5304453950985,14.0675453326196,16.5794904607885,11.6412820064348,2.76466500925286,0,0.578397427679647,0,0.161766849947409,0,0,0,0,1.25668024088073,0,0,0,0,3.2953940669061,1.37250180845588,0.753926112677186,1.04294592115366,1.79000820131231,0.41557608911912,3.40706652442291,4.17541391786297,0.497627882440372,0.252722758433675,0.210441855886474,0.780722657776222,0,0.180062129805349,0.60281927134286,0.544291993210623,0.384341160854549,0.374806898238915,1.03481348295606,0,0.189106080167819,0.703804496655795,0.219195732427575,0.834141747676794,0.348252166522167,0,1.99034266818493,0,0,0,0.414251545071004,0.469052119962192,0.180062061461015,0,0.196764231747404,0.308534225774757,0.232533944750408,0,0,0,0,0.0810688095458557,0,0,0,0,0,0,0,10.2378360256912,11.3795969211615,5.15469845288373,2.62188582010345,2.2237804384487,0.570676878337677,0,0.988193728344065,0.251335208800269,0.198956472041151,0.779856348476481,0,0,0.398282546508734,3.22435431620239,4.56994050438915,2.25415471346161,0.814605311381257,1.16371492300575,0.631222379012867,0.632365371242573,0.295220295959204,0.156998727841375,0.123397163921801,0.296452627087149,0.500535317148282,0.786235980452812,0,0.202860121388503,0.241177159752417,0,0,0.162135226775035,0,0,0,0.312037673114561,0,0,0,0,2.08440552947533,1.14075483509418,0.509235257325564,0.234690248288502,0,0.238043640886014,0.585400943573396,0,0,0,0,0,0,0,0,0,0.551873492609465,11.8807436590966,10.4318401067061,0,0,31.8663301610419,28.5020283336546,44.1617965352238,16.010909462821,32.3058077419471,46.7076275801574,51.0061484110367,51.4370309923909,69.1753611406416,1.60660658210904,0.425820255624806,0.534196811001766,1.46598263418218,0.164970122972535,0,0.971122544619926,0,0,0,0.614870295887855,0.516856586336442,0.727067458955011,0.712994756769443,0,0,0,1.70219802876894,7.92268813737765,13.9707378485375,10.2881776815164,11.1724347194632,6.95638388648075,4.93647061806363,9.13394847343798,7.97883807416615,0.42366414172764,1.32317038832977,0.32977250588296,0.484393280087717,0.180938774784468,0.238744688006273,0,0.291480836629851,15.9465759729038,1.19609616558497,1.03193433981611,2.96311243791539,0.941842285023455,0.820165366326151,0.228778173206523,0,0,0,0,8.54107182669065,3.86306987541013,3.02414954301044,1.25452977608681,1.5285379462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| {{FFCP | ||
|DHSsupport=NA | |||
|DPIdataset=NA | |||
|EntrezGene=20564 | |||
|HGNC= | |||
|MCL_coexpression_id=114 | |||
|TSSclassifier=NA | |||
|UniProt= | |||
|association_with_transcript=-119bp_to_ENSMUST00000124438_5end | |||
|cluster_id=chr11:35358024..35358067,+ | |||
|description=CAGE_peak_4_at_Slit3_5end | |||
|id=chr11:35358024..35358067,+ | |||
|ontology_enrichment_celltype=CL:0000540!8.41e-10!33;CL:0000047!8.41e-10!33;CL:0000031!8.41e-10!33;CL:0000404!8.41e-10!33;CL:0000107!4.59e-08!9 | |||
|ontology_enrichment_celltype_v019_2=CL:0000540,1.13e-12,33;CL:0000047,1.13e-12,33;CL:0000031,1.13e-12,33;CL:0000404,1.13e-12,33;CL:0000107,2.72e-10,9;CL:0000393,2.63e-09,39;CL:0000211,2.63e-09,39;CL:0002319,1.21e-07,43;CL:0000221,2.78e-07,44;CL:0000133,2.78e-07,44 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0001017!5.55e-14!73;UBERON:0005743!5.55e-14!73;UBERON:0004121!5.80e-14!102;UBERON:0000924!5.80e-14!102;UBERON:0006601!5.80e-14!102;UBERON:0002346!1.30e-13!71;UBERON:0003075!1.30e-13!71;UBERON:0007284!1.30e-13!71;UBERON:0000073!2.70e-13!75;UBERON:0001016!2.70e-13!75;UBERON:0001049!6.93e-09!52;UBERON:0005068!6.93e-09!52;UBERON:0006241!6.93e-09!52;UBERON:0007135!6.93e-09!52;UBERON:0002410!4.59e-08!9;UBERON:0002342!5.49e-08!10;UBERON:0005062!5.49e-08!10;UBERON:0000468!1.42e-07!333;UBERON:0000955!1.85e-07!50;UBERON:0006238!1.85e-07!50;UBERON:0002616!3.24e-07!49 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0001017,1.78e-19,73;UBERON:0001016,1.85e-18,75;UBERON:0000073,8.26e-13,54;UBERON:0001049,7.72e-12,52;UBERON:0005068,7.72e-12,52;UBERON:0006241,7.72e-12,52;UBERON:0007135,7.72e-12,52;UBERON:0004121,2.27e-11,95;UBERON:0000924,2.27e-11,95;UBERON:0006601,2.27e-11,95;UBERON:0002346,7.37e-11,64;UBERON:0003075,7.37e-11,64;UBERON:0007284,7.37e-11,64;UBERON:0002410,2.72e-10,9;UBERON:0010314,1.90e-08,92;UBERON:0000955,2.28e-08,47;UBERON:0006238,2.28e-08,47;UBERON:0002616,4.71e-08,46;UBERON:0010371,5.49e-08,73;UBERON:0003080,8.77e-08,40;UBERON:0000010,8.82e-08,11;UBERON:0002780,2.50e-07,39;UBERON:0001890,2.50e-07,39;UBERON:0006240,2.50e-07,39;UBERON:0002369,2.59e-07,7;UBERON:0006858,2.59e-07,7;UBERON:0000007,4.05e-07,8;UBERON:0003296,4.05e-07,8;UBERON:0010133,4.05e-07,8 | |||
|phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.333109761815663,0.202475267389826,0,0,0,0,1.27564935226605,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,4.45096213891115,4.23192783417626,0.633831403506179,0,0,0,0,0,0,0,0,0,0,12.8542942981712,11.9269012113871,0.367472397644862,0.191690942036473,0,6.60695285996332,4.08599481872601,3.84016333140609,2.2420668914133,2.65314166446988,1.04182674111352,6.42120897703176,2.25105044012672,1.98637722109853,7.07108605136802,9.11178757114259,13.047961207771,0,0.226714680320357,0,0,0.679971333707751,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.34255163915718,0,11.4300447079915,22.2061218260654,22.5304453950985,14.0675453326196,16.5794904607885,11.6412820064348,2.76466500925286,0,0.578397427679647,0,0.161766849947409,0,0,0,0,1.25668024088073,0,0,0,0,3.2953940669061,1.37250180845588,0.753926112677186,1.04294592115366,1.79000820131231,0.41557608911912,3.40706652442291,4.17541391786297,0.497627882440372,0.252722758433675,0.210441855886474,0.780722657776222,0,0.180062129805349,0.60281927134286,0.544291993210623,0.384341160854549,0.374806898238915,1.03481348295606,0,0.189106080167819,0.703804496655795,0.219195732427575,0.834141747676794,0.348252166522167,0,1.99034266818493,0,0,0,0.414251545071004,0.469052119962192,0.180062061461015,0,0.196764231747404,0.308534225774757,0.232533944750408,0,0,0,0,0.0810688095458557,0,0,0,0,0,0,0,10.2378360256912,11.3795969211615,5.15469845288373,2.62188582010345,2.2237804384487,0.570676878337677,0,0.988193728344065,0.251335208800269,0.198956472041151,0.779856348476481,0,0,0.398282546508734,3.22435431620239,4.56994050438915,2.25415471346161,0.814605311381257,1.16371492300575,0.631222379012867,0.632365371242573,0.295220295959204,0.156998727841375,0.123397163921801,0.296452627087149,0.500535317148282,0.786235980452812,0,0.202860121388503,0.241177159752417,0,0,0.162135226775035,0,0,0,0.312037673114561,0,0,0,0,2.08440552947533,1.14075483509418,0.509235257325564,0.234690248288502,0,0.238043640886014,0.585400943573396,0,0,0,0,0,0,0,0,0,0.551873492609465,11.8807436590966,10.4318401067061,0,0,31.8663301610419,28.5020283336546,44.1617965352238,16.010909462821,32.3058077419471,46.7076275801574,51.0061484110367,51.4370309923909,69.1753611406416,1.60660658210904,0.425820255624806,0.534196811001766,1.46598263418218,0.164970122972535,0,0.971122544619926,0,0,0,0.614870295887855,0.516856586336442,0.727067458955011,0.712994756769443,0,0,0,1.70219802876894,7.92268813737765,13.9707378485375,10.2881776815164,11.1724347194632,6.95638388648075,4.93647061806363,9.13394847343798,7.97883807416615,0.42366414172764,1.32317038832977,0.32977250588296,0.484393280087717,0.180938774784468,0.238744688006273,0,0.291480836629851,15.9465759729038,1.19609616558497,1.03193433981611,2.96311243791539,0.941842285023455,0.820165366326151,0.228778173206523,0,0,0,0,8.54107182669065,3.86306987541013,3.02414954301044,1.25452977608681,1.52853794622324,0.404593039154462,0.743881101528023,0.26175594198403,0,0.621339313086926,0,0.299033092087958,0.66183396182839,0,0,0.168956125490778,0.704143431874524,1.3020438484395,2.51662426621706,2.41584120826006,1.44015003128933,0,0,0.205421914329655,0,0.358053391334963,0,0.120195449519969,0,0,0,0,0,0,0,0,0,0,0,1.15913756419314,1.87682475451182,0.73260649706906,0.214368379079066,0,6.7770221114048,5.9842280745933,3.43737308063638,4.81188910562325,1.37016503954128,1.5107877947794,0.675022500231806,4.05289082901798,1.81256963593682,3.10656187051092,6.33102820263478,8.77854721482268,4.60980735536162,2.18796045361465,1.88651846365184,0.551530525350042,1.33348036680969,1.03017528619447,0.64183841918363,1.51618327058278,1.01391719956096,1.69763707247469,1.49826411951812,0.89635213366817,1.32101578597911,1.42888107384922,1.27472758539341,2.12200142510076,1.64834360321323,1.76638704161277,2.05721551431249,1.06485483695602,0.953744759789284,1.74415699958794,1.31753132581463,1.60767754994185,1.64635175585495,1.57841826862706,1.22223702461276,1.12228454331548,1.89816028998679,0.788035859004508,1.22769312950907,1.39443157067369,1.15743966588685,0.749431733813838,1.63752125911786,1.71896843238639,0.765153328275374,0.441182838239031,0.927471342481686 | |||
|short_description=p4@Slit3 | |||
}} |
Latest revision as of 08:52, 27 September 2015
Short description: | p4@Slit3 |
---|---|
Species: | Mouse (Mus musculus) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_4_at_Slit3_5end |
Coexpression cluster: | MCL_coexpression_mm9:114 |
Association with transcript: | -119bp_to_ENSMUST00000124438_5end |
EntrezGene: | Slit3 |
Link to Zenbu: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
neuron | 1.13e-12 | 33 |
neuronal stem cell | 1.13e-12 | 33 |
neuroblast | 1.13e-12 | 33 |
electrically signaling cell | 1.13e-12 | 33 |
autonomic neuron | 2.72e-10 | 9 |
electrically responsive cell | 2.63e-09 | 39 |
electrically active cell | 2.63e-09 | 39 |
neural cell | 1.21e-07 | 43 |
ectodermal cell | 2.78e-07 | 44 |
neurectodermal cell | 2.78e-07 | 44 |
Ontology term | p-value | n |
---|---|---|
central nervous system | 1.78e-19 | 73 |
nervous system | 1.85e-18 | 75 |
regional part of nervous system | 8.26e-13 | 54 |
neural tube | 7.72e-12 | 52 |
neural rod | 7.72e-12 | 52 |
future spinal cord | 7.72e-12 | 52 |
neural keel | 7.72e-12 | 52 |
ectoderm-derived structure | 2.27e-11 | 95 |
ectoderm | 2.27e-11 | 95 |
presumptive ectoderm | 2.27e-11 | 95 |
neurectoderm | 7.37e-11 | 64 |
neural plate | 7.37e-11 | 64 |
presumptive neural plate | 7.37e-11 | 64 |
autonomic nervous system | 2.72e-10 | 9 |
structure with developmental contribution from neural crest | 1.90e-08 | 92 |
brain | 2.28e-08 | 47 |
future brain | 2.28e-08 | 47 |
regional part of brain | 4.71e-08 | 46 |
ecto-epithelium | 5.49e-08 | 73 |
anterior neural tube | 8.77e-08 | 40 |
peripheral nervous system | 8.82e-08 | 11 |
regional part of forebrain | 2.50e-07 | 39 |
forebrain | 2.50e-07 | 39 |
future forebrain | 2.50e-07 | 39 |
adrenal gland | 2.59e-07 | 7 |
adrenal/interrenal gland | 2.59e-07 | 7 |
pituitary gland | 4.05e-07 | 8 |
gland of diencephalon | 4.05e-07 | 8 |
neuroendocrine gland | 4.05e-07 | 8 |