FFCP PHASE1:Mm9::chr12:92828472..92828496,-: Difference between revisions
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{{FFCP|EntrezGene=83602|HGNC=|UniProt=Q99PM3|association_with_transcript=-23bp_to_ENSMUST00000021345_5end|description=CAGE_peak_3_at_Gtf2a1_5end|id=chr12:92828472..92828496,-|ontology_enrichment_celltype=CL:0000393!1.09e-12!39;CL:0000211!1.09e-12!39;CL:0000055!2.04e-12!50;CL:0000117!3.76e-12!23;CL:0000337!3.76e-12!23;CL:0002319!1.55e-11!43;CL:0000221!1.77e-11!44;CL:0000133!1.77e-11!44;CL:0000540!6.56e-11!33;CL:0000047!6.56e-11!33;CL:0000031!6.56e-11!33;CL:0000404!6.56e-11!33;CL:0002321!2.25e-09!70;CL:0000220!2.25e-09!70;CL:0000548!3.00e-09!115;CL:0000004!3.00e-09!115;CL:0000255!3.00e-09!115;CL:0002371!4.39e-09!118;CL:0000723!5.31e-08!91;CL:0000048!5.31e-08!91;CL:0000144!7.73e-08!121;CL:0000012!7.73e-08!121;CL:0000034!1.34e-07!97|ontology_enrichment_celltype_v019_2=CL:0000393,1.09e-12,39;CL:0000211,1.09e-12,39;CL:0000117,3.76e-12,23;CL:0000337,3.76e-12,23;CL:0002319,1.55e-11,43;CL:0000221,1.77e-11,44;CL:0000133,1.77e-11,44;CL:0000540,6.56e-11,33;CL:0000047,6.56e-11,33;CL:0000031,6.56e-11,33;CL:0000404,6.56e-11,33;CL:0002321,2.23e-09,70;CL:0000723,5.28e-08,91;CL:0000048,5.28e-08,91;CL:0000034,1.33e-07,97|ontology_enrichment_disease=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=UBERON:0000073!8.32e-18!75;UBERON:0001016!8.32e-18!75;UBERON:0001017!1.24e-16!73;UBERON:0005743!1.24e-16!73;UBERON:0001049!3.39e-13!52;UBERON:0005068!3.39e-13!52;UBERON:0006241!3.39e-13!52;UBERON:0007135!3.39e-13!52;UBERON:0002020!5.14e-13!34;UBERON:0000955!4.61e-12!50;UBERON:0006238!4.61e-12!50;UBERON:0002616!8.38e-12!49;UBERON:0002791!1.65e-10!29;UBERON:0003528!1.65e-10!29;UBERON:0001893!1.65e-10!29;UBERON:0002780!4.89e-10!39;UBERON:0001890!4.89e-10!39;UBERON:0006240!4.89e-10!39;UBERON:0003080!6.58e-10!40;UBERON:0004121!1.75e-09!102;UBERON:0000924!1.75e-09!102;UBERON:0006601!1.75e-09!102;UBERON:0000033!1.94e-08!63;UBERON:0002346!3.31e-08!71;UBERON:0003075!3.31e-08!71;UBERON:0007284!3.31e-08!71;UBERON:0000956!4.68e-08!21;UBERON:0001869!4.68e-08!21;UBERON:0000203!4.68e-08!21|ontology_enrichment_uberon_v019_2=UBERON:0001016,8.32e-18,75;UBERON:0001017,1.24e-16,73;UBERON:0000073,3.01e-14,54;UBERON:0001049,3.39e-13,52;UBERON:0005068,3.39e-13,52;UBERON:0006241,3.39e-13,52;UBERON:0007135,3.39e-13,52;UBERON:0002020,5.14e-13,34;UBERON:0000955,8.37e-11,47;UBERON:0006238,8.37e-11,47;UBERON:0002616,1.50e-10,46;UBERON:0003528,1.65e-10,29;UBERON:0002791,1.65e-10,29;UBERON:0001893,1.65e-10,29;UBERON:0004121,1.80e-10,95;UBERON:0000924,1.80e-10,95;UBERON:0006601,1.80e-10,95;UBERON:0002780,4.89e-10,39;UBERON:0001890,4.89e-10,39;UBERON:0006240,4.89e-10,39;UBERON:0003080,6.58e-10,40;UBERON:0002346,1.92e-09,64;UBERON:0003075,1.92e-09,64;UBERON:0007284,1.92e-09,64;UBERON:0000956,4.68e-08,21;UBERON:0001869,4.68e-08,21;UBERON:0000203,4.68e-08,21;UBERON:0010371,3.53e-07,73|phase1_expression=6.40595388419176,2.79180326111489,4.54999239389536,1.81478526784098,2.50447864973174,5.70789524500425,6.07392865548367,5.55230290798778,3.23814060948833,3.7450324211519,4.96532107853964,5.90313976565489,4.79362043807376,4.98296293788285,13.3243904726265,9.11138703254217,14.6907994406911,7.41336088591859,7.81552271552711,7.21462408056651,4.25216450755349,2.97872853602656,3.13439746966722,4.15980299262857,2.98232065387321,4.59385571292016,4.30761996159075,4.95583835177545,3.23039813075836,5.04060259519861,3.99114919179548,5.08024538767705,4.92051830067656,0,3.75507105676657,6.64938581433969,6.73758875665818,7.53356935326434,2.3440060335714,4.18818995179039,9.41170380849623,12.9778642142105,4.36959317728038,6.79842817068117,7.40051597902456,9.54443111240744,8.60630478782843,3.70642765846759,3.29529274101708,5.44403717407994,5.87942970826523,4.31257693094915,5.36904339384756,4.35217285206807,2.68875039313971,5.40244815675489,7.73640287834643,5.15672092277442,9.1042407386819,12.1667925232568,13.9442908771359,3.04960078862219,5.33576877666684,4.94944844504769,7.9109309005358,2.8419204597844,5.09320187881288,4.99483796918021,11.1984781293156,8.6403800532282,9.04397333810943,8.2838785477103,8.39300455616131,8.69684674426174,7.66763768145891,5.51531271966013,14.3150645299205,5.2351808614927,13.0565553267807,9.89147157976454,8.59983849862651,8.85552729946492,5.58365998002762,14.069065250792,9.47349136216223,10.3120004915784,8.25755748634797,12.3023634244698,12.4948218999754,9.52201657345497,4.34796733052517,1.72084775396277,0,4.85732872474035,3.24888208723835,2.68816132258401,1.82577746171277,5.28333999991979,3.89679006904303,6.36011234118612,4.78867627240714,3.84979432242953,0,0,6.92771331235885,8.61423542615335,11.1215377903252,3.31133251185274,1.29468941823586,3.56261133755579,5.37804512975021,4.87144765299426,2.30615497256059,4.52167921657868,3.41007250693544,3.64433114856059,3.21353458054686,2.4581890676385,6.19227386364912,1.7794353494215,2.20841518460394,4.363877278217,0,4.68449275218475,11.7290155815535,3.57639877292028,3.11519323715393,2.99951365496704,2.54140454146129,4.49371918214468,4.11750542536764,5.40313714085317,5.56237824615285,9.46147192122223,4.36354893575076,4.38051410282946,2.34230536855727,2.86136032403214,4.80173241023982,3.57751155007006,4.81445638962004,5.0578462975364,2.16074555766419,3.61691562805716,1.42876648217788,2.69038812598185,4.59138450342671,2.32833033665114,4.31135985865684,2.45837904218165,4.39877810409872,5.91828477554452,2.50242524303038,1.39300866608867,2.88094990971121,6.17006227137329,2.80885274925294,3.60287069960601,2.55747149456033,3.31401236056803,6.0976775595085,5.76198596675248,5.20838418287463,4.32881309844288,3.23960937063494,3.72054311600653,2.95100741539581,3.97002164048376,2.79751744852917,2.13417703302824,2.26992666728396,2.92399974850665,1.75640092232841,3.48936688776967,7.78072809687271,7.20332286654991,2.31293148088659,2.11560453330835,4.47905326123991,3.94802342162745,2.19074684247559,3.02525286935014,3.7804267453628,4.56541502670142,3.32170343081158,2.79988223030818,4.27269854960458,2.38747766449381,2.14460495831032,3.59527763461689,3.6743468478698,2.38969527905241,4.1726938209678,5.1411830674378,5.63538678365402,5.49858585182348,3.29719228184964,2.24434623649019,2.21327879934901,2.21415221969403,4.39596437955849,2.71473760627961,1.1858105083486,3.50374722003798,6.6830058338489,3.82265591054251,4.66578279193557,6.75296047306767,3.31013607315846,2.30156909960649,5.5125977103512,4.3929826110093,1.43768206527355,3.72140947668503,4.99260276983297,1.76805214562978,2.69096120282868,2.41221760681684,4.0645701836653,8.90609635321278,4.4000543639347,4.75286240170527,4.22442446919304,3.85264392116176,1.6663054862021,2.53673742215138,2.83743259391144,2.6575762757853,3.98636921643718,4.58817281204066,4.83517949224508,3.03763023021174,6.03165135757089,11.9659250440116,0.491764273019036,4.69092468718045,6.90367536947505,4.21962071731931,5.57378814280696,3.28212205365685,5.99465616890888,4.68526493155966,3.44677436372478,3.82350076724083,5.12436950389506,6.79383673893198,3.64329631507405,8.76767573733936,3.95287777946523,6.10510501201433,3.26462195979018,2.84904965867608,5.04949573996086,2.14461159864296,2.65490276679926,3.39892890616974,4.83717691143602,3.96070667487386,1.77181135728464,4.91896236710284,3.10113951801865,7.27067458955011,3.56497378384721,1.8962205476149,5.27093042874994,4.12542172992747,5.7874732978144,2.88097750450096,5.30370603509293,6.64444808597936,5.67488747655275,5.52943334566419,5.59466670047211,3.95804433848979,9.85621173867584,7.20229040936989,1.54369878638473,2.14352128823924,3.39075296061402,3.61877549568935,3.10368094408155,2.62625439592098,3.78925087618806,6.11903496634682,5.63873906632914,3.92135049130123,3.33350149265481,6.02779062415011,4.92099219795691,5.71945433016307,2.54967644990783,1.95932033253121,1.93479963326193,0,6.16855187483214,5.08298667817122,5.29226170026826,3.97267762427491,3.71216358368502,2.29269388854195,2.0663363931334,2.87931536182433,3.24037433229482,4.97071450469541,10.7101658349996,8.37292657846281,9.10021697514037,7.00024278038572,7.23295011475294,5.4065960157049,5.16371850041317,6.64042362704146,11.1150905091254,5.31485065817213,6.04863013141517,3.79213344753814,3.44632865993279,5.44368072973584,4.15746633528944,3.93858730468459,5.16571522431289,3.36547258655913,3.54454865218985,3.12995994839258,3.50551310612999,3.32726410951574,4.0932309910696,4.71438024037614,5.49321440253374,2.72076460338254,7.76950836809226,6.2799699626633,9.56942313275247,3.28422309854724,4.31669693537719,4.02933573387983,4.71610433973945,1.50471631210609,5.0827665835536,10.5874804396651,4.58316410751517,13.9201077698387,15.0718154349541,11.3309084608455,9.45031500324528,8.10578165803597,8.60970577069989,9.83744592328458,6.43481555021895,2.39414924040619,6.4878770186571,1.94485373654635,7.33646069197938,6.61836630420051,4.4449345560323,5.35691148821125,5.45562656306086,4.04315538822076,4.56262739802432,3.77252682772152,5.80577346313271,4.41773551593598,4.19278923375977,7.1444053692461,4.1718357340148,3.08654752741928,6.59337441285291,3.67997300335993,3.42869252385415,4.61437096014278,3.81497903915713,3.63366041580821,4.51725025993587,3.9768865709088,3.10977553883713,2.89376682581627,3.12349461845482,2.80571135828869,4.38949567059444,3.74317033027141,2.86461730218783,3.25367366490529,3.85813221962283,3.74715866906919,2.57324769289949,3.00819475667618,3.25190164517034,4.63241980150983,4.40548887678801|short_description=p3@Gtf2a1}} | {{FFCP | ||
|DHSsupport=NA | |||
|DPIdataset=NA | |||
|EntrezGene=83602 | |||
|HGNC= | |||
|TSSclassifier=NA | |||
|UniProt=Q99PM3 | |||
|association_with_transcript=-23bp_to_ENSMUST00000021345_5end | |||
|cluster_id=chr12:92828472..92828496,- | |||
|description=CAGE_peak_3_at_Gtf2a1_5end | |||
|id=chr12:92828472..92828496,- | |||
|ontology_enrichment_celltype=CL:0000393!1.09e-12!39;CL:0000211!1.09e-12!39;CL:0000055!2.04e-12!50;CL:0000117!3.76e-12!23;CL:0000337!3.76e-12!23;CL:0002319!1.55e-11!43;CL:0000221!1.77e-11!44;CL:0000133!1.77e-11!44;CL:0000540!6.56e-11!33;CL:0000047!6.56e-11!33;CL:0000031!6.56e-11!33;CL:0000404!6.56e-11!33;CL:0002321!2.25e-09!70;CL:0000220!2.25e-09!70;CL:0000548!3.00e-09!115;CL:0000004!3.00e-09!115;CL:0000255!3.00e-09!115;CL:0002371!4.39e-09!118;CL:0000723!5.31e-08!91;CL:0000048!5.31e-08!91;CL:0000144!7.73e-08!121;CL:0000012!7.73e-08!121;CL:0000034!1.34e-07!97 | |||
|ontology_enrichment_celltype_v019_2=CL:0000393,1.09e-12,39;CL:0000211,1.09e-12,39;CL:0000117,3.76e-12,23;CL:0000337,3.76e-12,23;CL:0002319,1.55e-11,43;CL:0000221,1.77e-11,44;CL:0000133,1.77e-11,44;CL:0000540,6.56e-11,33;CL:0000047,6.56e-11,33;CL:0000031,6.56e-11,33;CL:0000404,6.56e-11,33;CL:0002321,2.23e-09,70;CL:0000723,5.28e-08,91;CL:0000048,5.28e-08,91;CL:0000034,1.33e-07,97 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0000073!8.32e-18!75;UBERON:0001016!8.32e-18!75;UBERON:0001017!1.24e-16!73;UBERON:0005743!1.24e-16!73;UBERON:0001049!3.39e-13!52;UBERON:0005068!3.39e-13!52;UBERON:0006241!3.39e-13!52;UBERON:0007135!3.39e-13!52;UBERON:0002020!5.14e-13!34;UBERON:0000955!4.61e-12!50;UBERON:0006238!4.61e-12!50;UBERON:0002616!8.38e-12!49;UBERON:0002791!1.65e-10!29;UBERON:0003528!1.65e-10!29;UBERON:0001893!1.65e-10!29;UBERON:0002780!4.89e-10!39;UBERON:0001890!4.89e-10!39;UBERON:0006240!4.89e-10!39;UBERON:0003080!6.58e-10!40;UBERON:0004121!1.75e-09!102;UBERON:0000924!1.75e-09!102;UBERON:0006601!1.75e-09!102;UBERON:0000033!1.94e-08!63;UBERON:0002346!3.31e-08!71;UBERON:0003075!3.31e-08!71;UBERON:0007284!3.31e-08!71;UBERON:0000956!4.68e-08!21;UBERON:0001869!4.68e-08!21;UBERON:0000203!4.68e-08!21 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0001016,8.32e-18,75;UBERON:0001017,1.24e-16,73;UBERON:0000073,3.01e-14,54;UBERON:0001049,3.39e-13,52;UBERON:0005068,3.39e-13,52;UBERON:0006241,3.39e-13,52;UBERON:0007135,3.39e-13,52;UBERON:0002020,5.14e-13,34;UBERON:0000955,8.37e-11,47;UBERON:0006238,8.37e-11,47;UBERON:0002616,1.50e-10,46;UBERON:0003528,1.65e-10,29;UBERON:0002791,1.65e-10,29;UBERON:0001893,1.65e-10,29;UBERON:0004121,1.80e-10,95;UBERON:0000924,1.80e-10,95;UBERON:0006601,1.80e-10,95;UBERON:0002780,4.89e-10,39;UBERON:0001890,4.89e-10,39;UBERON:0006240,4.89e-10,39;UBERON:0003080,6.58e-10,40;UBERON:0002346,1.92e-09,64;UBERON:0003075,1.92e-09,64;UBERON:0007284,1.92e-09,64;UBERON:0000956,4.68e-08,21;UBERON:0001869,4.68e-08,21;UBERON:0000203,4.68e-08,21;UBERON:0010371,3.53e-07,73 | |||
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| |||
|short_description=p3@Gtf2a1 | |||
}} |
Latest revision as of 00:09, 27 September 2015
Short description: | p3@Gtf2a1 |
---|---|
Species: | Mouse (Mus musculus) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_3_at_Gtf2a1_5end |
Coexpression cluster: | NA |
Association with transcript: | -23bp_to_ENSMUST00000021345_5end |
EntrezGene: | Gtf2a1 |
Link to Zenbu: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
electrically responsive cell | 1.09e-12 | 39 |
electrically active cell | 1.09e-12 | 39 |
CNS neuron (sensu Vertebrata) | 3.76e-12 | 23 |
neuroblast (sensu Vertebrata) | 3.76e-12 | 23 |
neural cell | 1.55e-11 | 43 |
ectodermal cell | 1.77e-11 | 44 |
neurectodermal cell | 1.77e-11 | 44 |
neuron | 6.56e-11 | 33 |
neuronal stem cell | 6.56e-11 | 33 |
neuroblast | 6.56e-11 | 33 |
electrically signaling cell | 6.56e-11 | 33 |
embryonic cell | 2.23e-09 | 70 |
somatic stem cell | 5.28e-08 | 91 |
multi fate stem cell | 5.28e-08 | 91 |
stem cell | 1.33e-07 | 97 |
Ontology term | p-value | n |
---|---|---|
nervous system | 8.32e-18 | 75 |
central nervous system | 1.24e-16 | 73 |
regional part of nervous system | 3.01e-14 | 54 |
neural tube | 3.39e-13 | 52 |
neural rod | 3.39e-13 | 52 |
future spinal cord | 3.39e-13 | 52 |
neural keel | 3.39e-13 | 52 |
gray matter | 5.14e-13 | 34 |
brain | 8.37e-11 | 47 |
future brain | 8.37e-11 | 47 |
regional part of brain | 1.50e-10 | 46 |
brain grey matter | 1.65e-10 | 29 |
regional part of telencephalon | 1.65e-10 | 29 |
telencephalon | 1.65e-10 | 29 |
ectoderm-derived structure | 1.80e-10 | 95 |
ectoderm | 1.80e-10 | 95 |
presumptive ectoderm | 1.80e-10 | 95 |
regional part of forebrain | 4.89e-10 | 39 |
forebrain | 4.89e-10 | 39 |
future forebrain | 4.89e-10 | 39 |
anterior neural tube | 6.58e-10 | 40 |
neurectoderm | 1.92e-09 | 64 |
neural plate | 1.92e-09 | 64 |
presumptive neural plate | 1.92e-09 | 64 |
cerebral cortex | 4.68e-08 | 21 |
cerebral hemisphere | 4.68e-08 | 21 |
pallium | 4.68e-08 | 21 |
ecto-epithelium | 3.53e-07 | 73 |