FFCP PHASE1:Hg19::chr3:50192833..50192874,+: Difference between revisions
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{{FFCP|DPIdataset= | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=6405 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=10728 | |||
|TSSclassifier=strong | |||
|UniProt=C9IYS6,Q13275 | |||
|association_with_transcript=0bp_to_ENST00000426511,NM_004186,uc003cyj.2_5end | |||
|cluster_id=chr3:50192833..50192874,+ | |||
|description=CAGE_peak_6_at_SEMA3F_5end | |||
|id=chr3:50192833..50192874,+ | |||
|ontology_enrichment_celltype=CL:0000066!5.98e-31!254;CL:0000115!1.90e-16!35;CL:0002078!8.13e-16!44;CL:0002139!4.05e-15!24;CL:0000076!4.83e-15!62;CL:0002321!7.33e-13!248;CL:0000213!1.39e-12!57;CL:0000215!1.39e-12!57;CL:0000220!1.48e-12!246;CL:0000071!1.25e-11!18;CL:0002546!1.25e-11!18;CL:1000449!9.37e-09!16;CL:1000497!3.95e-08!18;CL:0002518!3.95e-08!18;CL:0002076!5.82e-08!43;CL:0002681!7.95e-07!13;CL:0002584!7.95e-07!13 | |||
|ontology_enrichment_celltype_v019=CL:0000115;2.61e-17;36!CL:0002139;8.39e-13;24!CL:0000071;2.39e-12;18!CL:0000244;3.08e-12;4!CL:0000731;3.08e-12;4!CL:0002078;1.11e-11;45!CL:0002543;1.33e-10;6!CL:1000449;2.51e-10;15!CL:0002681;3.56e-10;12!CL:0002584;3.56e-10;12!CL:0002188;4.53e-09;5!CL:1000497;6.25e-09;17!CL:0002518;6.25e-09;17!CL:0002618;1.19e-08;3!CL:0002368;1.95e-08;13!CL:0002076;3.05e-08;42!CL:0000213;4.84e-08;58!CL:0000215;4.84e-08;58!CL:1000413;5.46e-07;9!CL:0000575;7.88e-07;2 | |||
|ontology_enrichment_celltype_v019_2=CL:0000066,4.28e-23,253;CL:0000115,3.91e-21,36;CL:0002078,9.06e-20,45;CL:0002139,5.71e-13,24;CL:0000213,1.07e-12,58;CL:0000215,1.07e-12,58;CL:0000071,1.40e-12,18;CL:0002546,1.40e-12,18;CL:0000244,3.19e-12,4;CL:0000731,3.19e-12,4;CL:0000076,4.77e-11,63;CL:0002321,5.88e-11,250;CL:0002543,9.91e-11,6;CL:1000449,2.82e-10,15;CL:0002681,4.42e-10,12;CL:0002584,4.42e-10,12;CL:0002188,3.81e-09,5;CL:0002618,6.63e-09,3;CL:1000497,6.89e-09,17;CL:0002518,6.89e-09,17;CL:0002076,1.66e-08,42;CL:0002368,1.71e-08,13;CL:0000223,3.17e-07,58;CL:1000413,3.83e-07,9;CL:0000575,8.30e-07,2 | |||
|ontology_enrichment_development_v019=CL:0002546;2.39e-12;18 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0000483!1.63e-13!309;UBERON:0000119!2.80e-13!312;UBERON:0001986!1.25e-11!18;UBERON:0004638!1.25e-11!18;UBERON:0004852!1.25e-11!18;UBERON:0006554!2.17e-11!44;UBERON:0001008!7.14e-11!45;UBERON:0000487!1.43e-10!22;UBERON:0000467!5.46e-10!625;UBERON:0000468!5.61e-10!659;UBERON:0000480!7.27e-10!626;UBERON:0006914!1.27e-09!25;UBERON:0000477!2.10e-09!286;UBERON:0004119!5.45e-09!169;UBERON:0000925!5.45e-09!169;UBERON:0006595!5.45e-09!169;UBERON:0004211!9.37e-09!16;UBERON:0001285!9.37e-09!16;UBERON:0007684!9.37e-09!16;UBERON:0003220!9.37e-09!16;UBERON:0004208!9.37e-09!16;UBERON:0000922!9.61e-09!612;UBERON:0004111!1.04e-08!241;UBERON:0000080!1.72e-08!18;UBERON:0002120!1.72e-08!18;UBERON:0004875!1.72e-08!18;UBERON:0005721!1.72e-08!18;UBERON:0005754!1.72e-08!18;UBERON:0007297!1.72e-08!18;UBERON:0002113!1.97e-08!27;UBERON:0003918!1.97e-08!27;UBERON:0005095!1.97e-08!27;UBERON:0007687!1.97e-08!27;UBERON:0003887!2.67e-08!21;UBERON:0000058!3.65e-08!26;UBERON:0005177!5.16e-08!107;UBERON:0000489!5.73e-08!32;UBERON:0006555!6.33e-08!17;UBERON:0005103!6.33e-08!17;UBERON:0000083!6.33e-08!17;UBERON:0009201!6.33e-08!17;UBERON:0004819!6.33e-08!17;UBERON:0006553!6.33e-08!17;UBERON:0003074!6.33e-08!17;UBERON:0003060!6.33e-08!17;UBERON:0003103!6.96e-08!69;UBERON:0000353!1.24e-07!17;UBERON:0000923!1.80e-07!604;UBERON:0005291!1.80e-07!604;UBERON:0006598!1.80e-07!604;UBERON:0002532!1.80e-07!604;UBERON:0002050!2.30e-07!605;UBERON:0005423!2.30e-07!605;UBERON:0004876!4.40e-07!20;UBERON:0005157!4.95e-07!51;UBERON:0000481!5.25e-07!347;UBERON:0003914!6.38e-07!118;UBERON:0001225!7.95e-07!13;UBERON:0008987!7.95e-07!13;UBERON:0003064!8.39e-07!37 | |||
|ontology_enrichment_uberon_v019=UBERON:0000353;1.07e-12;15!UBERON:0004638;2.39e-12;18!UBERON:0001986;2.39e-12;18!UBERON:0004852;2.39e-12;18!UBERON:0006554;1.16e-10;30!UBERON:0001008;1.16e-10;30!UBERON:0006555;2.51e-10;15!UBERON:0004819;2.51e-10;15!UBERON:0001285;2.51e-10;15!UBERON:0007684;2.51e-10;15!UBERON:0001225;3.56e-10;12!UBERON:0008987;3.56e-10;12!UBERON:0000365;9.18e-10;5!UBERON:0000487;1.03e-09;22!UBERON:0006914;2.67e-08;25!UBERON:0005910;4.12e-08;6!UBERON:0000490;6.51e-08;33!UBERON:0001851;6.63e-08;15!UBERON:0000486;9.64e-08;12!UBERON:0000119;3.74e-07;139!UBERON:0003915;5.46e-07;9!UBERON:0004700;5.46e-07;9!UBERON:0001917;5.46e-07;9!UBERON:0001638;6.19e-07;9!UBERON:0003920;6.19e-07;9!UBERON:0004582;6.19e-07;9!UBERON:0000483;7.11e-07;136!UBERON:0000964;9.40e-07;4!UBERON:0010409;9.40e-07;4 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0000353,1.18e-12,15;UBERON:0004638,1.40e-12,18;UBERON:0001986,1.40e-12,18;UBERON:0004852,1.40e-12,18;UBERON:0006554,1.14e-10,47;UBERON:0001008,2.31e-10,48;UBERON:0004211,2.82e-10,15;UBERON:0009773,2.82e-10,15;UBERON:0001231,2.82e-10,15;UBERON:0001285,2.82e-10,15;UBERON:0007684,2.82e-10,15;UBERON:0004208,2.82e-10,15;UBERON:0001225,4.42e-10,12;UBERON:0008987,4.42e-10,12;UBERON:0000487,6.70e-10,22;UBERON:0000365,9.43e-10,5;UBERON:0006555,1.54e-09,16;UBERON:0004819,1.54e-09,16;UBERON:0006914,1.85e-08,25;UBERON:0005910,4.22e-08,6;UBERON:0001851,7.84e-08,15;UBERON:0000483,3.05e-07,306;UBERON:0003915,3.83e-07,9;UBERON:0004700,3.83e-07,9;UBERON:0001917,3.83e-07,9;UBERON:0000119,4.56e-07,309;UBERON:0001638,5.13e-07,9;UBERON:0003920,5.13e-07,9;UBERON:0004582,5.13e-07,9 | |||
|phase1_expression=0,0,0,0,0,0,0,0,0,0.737201809504527,3.48900583986214,0.655324116390517,0.527533956456907,0.247532705920093,0,0.672325146451775,0,0,0,0.246242116153576,0.612002073732759,0,0,0.273748850145768,0.251085279189606,0,0,0,0,0,0.154816123316076,0,1.8072355126695,2.21852406100073,0,0,0,0,0.200544447470142,0,0,0,0,0,0,0,0,0,0,0,0,0.236482229888585,0.344745680736619,0,0,0,0.272906150057846,0.224723484445085,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.212604299965044,0,0,0.150176892841506,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.511450247374121,2.1686349143074,0,0.434539556882471,0,0,0.189069634328136,1.10864698731282,0.527008714158756,0.196468613246569,4.00724817121796,3.33705998505986,0,0,0,0,0,0,1.39133685156694,0,1.73570250803797,2.26123176769604,3.77549492588915,0.825354125820202,1.46296476575767,0.775250277507987,2.13459757612026,1.33888245105868,0.402829317109147,0.760272105718513,0.488124115096339,0.367663080345869,0.81014194788176,1.96459402224975,2.91888184414021,2.0270066486998,1.53316637465883,0.949265659568129,1.09921046358244,0,0,3.48875241714027,0.496971951695318,0.12663051166458,0.132409180813219,0.860509862246441,0,0,0,0,0.311211035399766,0.134710672069688,0,0,0,0,0,0,0,0,0,0.140450806702248,0,0,0.413303124703062,0,0,0,0,0,0.125118519871964,0,0,0.30648779579902,0,0.113432183160021,0,0.213557388818567,0,0,0,0,0,0,0,0,0.184099797284599,0,1.06502877754984,0,0,0.193260853163297,1.63647672354501,1.14721838155602,0.121973706129595,0.132529768321485,0.116193942869518,0.10366105501537,0.252320850875628,0,0,0,0,0,0,0.236613600079688,0.168584690078102,0.241011029883482,0.110293972732394,0,0.474541238222193,0,0,0,1.4763109092493,1.40241773803446,0,0,0,0,0,0,0.368965315629341,0,1.20725313949488,2.24803506515239,1.20634766893957,0.555530670951178,0.325808305310325,1.03993478527958,0,0,0.117408694235822,0.577465791044295,0.462985512576611,0.761016608938393,0,0,0,0,0,0,0.335964256397719,0.992425680696705,0.447792613514241,0.290633938513962,1.15014803749563,0,0.088048434013226,0,0.144119953416961,0,0,0,0,1.71072446022705,0,0,0,0,0,0.07333828582095,0,0,0,0,0,0,0,0.532844358032199,0.142977993658148,0,0,0,0.355391948742546,0,0.301439377059586,0,0.399891964728228,0,0,0,0,2.29723871668228,1.42636905040718,0,0.205476322550383,0.179060963239896,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.178428988797162,0.157702415033935,0.117141414992713,0,0,0,0,0.368738337083406,0.0868836144680828,0,0,0,0,0,0,0,1.20956117331872,0,0,0,0,0,0,0,0,0,0,0,0,0.120859449591622,0.601519410909855,1.10497186723076,0,0,0,2.25599806453706,0.462092022626489,0.784349769176855,2.92278449306521,0.844413031143006,4.54933536283586,2.2112181685947,0.647747748306418,1.54227252690289,0,0,1.01950509218015,2.49322802678617,0.223874754722178,0,0,0.256450125116389,1.96808787419823,0,1.33953315142039,0,0,0.574265537996172,0.650060246036521,0,0.096670718292122,0.462145851343933,0.15350367472613,0,0.214840489736547,0,0.0852266274161009,0.0890320356467374,1.4875642382488,1.53752053892085,1.02090169995667,1.8208400553999,0,0,0,0.924100740528266,0.532306030317022,0,0.55597265731176,0,0,0,0,0,0.855877976067841,0,0,0,0,0,0,0,0,0.48763373908959,0.243713489631284,0,0,0,0,0,0,0,1.15755106853338,0,0,0,0,0,0,0,0,0.844430541190656,0,0,1.04980416073495,0.288666338176536,0.670302275535787,1.08890984861323,1.03558180854457,6.02707521739722,5.05414427002877,6.65145230305014,8.04031900724358,0,0,0,0,0,0,0,0,0.427296284509893,0.962479855263359,1.22520107990516,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.293016358543788,0.121360521749513,0,0,0,0,0,0,0,0.779160935160341,0,0.211125408127993,0,0,0,0,0,0,0.0898683511473268,0,0,0.394573622547734,0,0,0,0.278304294485554,0,1.04171104434093,0.0874599999961957,0.724999575434793,0.568967241427498,0.254253650292766,0.472775363535873,0,0,0,0,0.120596438625408,0,0,0,0.219385397153973,0,0.41827123283581,0.307801034015188,0.227884111694002,0,0,0.54323685961004,0,0,0,0,0,0,0,0,0,0,0,0,0,0.848118428603645,0,0,0.0884575645033392,0.611030144933625,0,0,0,0,0,0,0,0.19566461893209,0,1.57833761139756,0,0,0.568679216656392,0,0,0,0,0,1.19472429772959,1.42304773014896,0,0,0.685946781900644,0.69647365264322,0,0,0.483781656445426,0.511625219603299,0.246346371159628,0.0969890164884194,0,1.35588444468319,0.274083849293502,0,0,0,0.480952921509202,0,0,0,0,0,0,0.124252535565433,0,0,0,0,0,0.600420288709789,0.136905378891993,0,0,0,0.558564802544508,0.229160424011684,0.717873024576814,0.998395002494955,0.858452096273142,0.669514372325618,0.403100834920358,0,0,0.0787831823072236,0.0824158583811665,0.0674035438541849,0,0,0,0,0,0,0,0,0,0,0,0.0788057072991982,0.681909645754975,0,0.179287339332845,1.15149118391667,0,1.98627591109629,0.25426853765475,0.542999601753713,0,0,0,0,0,0.226624183040251,0,0,0.129282956361551,0,0.171086837884329,11.9818553793834,0.640724475406168,0.471612915298998,0.828478110694391,0,0,0,1.27668251554036,0,0.2506898940227,0,0.655745261419609,1.57054096250234,0,0.24405252980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| |||
|short_description=p6@SEMA3F | |||
}} |
Latest revision as of 18:13, 18 September 2015
Short description: | p6@SEMA3F |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_6_at_SEMA3F_5end |
Coexpression cluster: | NA |
Association with transcript: | 0bp_to_ENST00000426511, NM_004186, uc003cyj.2_5end |
EntrezGene: | SEMA3F |
HGNC: | 10728 |
UniProt: | C9IYS6Q13275 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
epithelial cell | 4.28e-23 | 253 |
endothelial cell | 3.91e-21 | 36 |
meso-epithelial cell | 9.06e-20 | 45 |
endothelial cell of vascular tree | 5.71e-13 | 24 |
lining cell | 1.07e-12 | 58 |
barrier cell | 1.07e-12 | 58 |
blood vessel endothelial cell | 1.40e-12 | 18 |
embryonic blood vessel endothelial progenitor cell | 1.40e-12 | 18 |
transitional epithelial cell | 3.19e-12 | 4 |
urothelial cell | 3.19e-12 | 4 |
squamous epithelial cell | 4.77e-11 | 63 |
embryonic cell | 5.88e-11 | 250 |
vein endothelial cell | 9.91e-11 | 6 |
epithelial cell of nephron | 2.82e-10 | 15 |
kidney cortical cell | 4.42e-10 | 12 |
renal cortical epithelial cell | 4.42e-10 | 12 |
glomerular endothelial cell | 3.81e-09 | 5 |
endothelial cell of umbilical vein | 6.63e-09 | 3 |
kidney cell | 6.89e-09 | 17 |
kidney epithelial cell | 6.89e-09 | 17 |
endo-epithelial cell | 1.66e-08 | 42 |
respiratory epithelial cell | 1.71e-08 | 13 |
endodermal cell | 3.17e-07 | 58 |
endothelial cell of artery | 3.83e-07 | 9 |
corneal epithelial cell | 8.30e-07 | 2 |
Ontology term | p-value | n |
---|---|---|
parenchyma | 1.18e-12 | 15 |
blood vessel endothelium | 1.40e-12 | 18 |
endothelium | 1.40e-12 | 18 |
cardiovascular system endothelium | 1.40e-12 | 18 |
urinary system structure | 1.14e-10 | 47 |
renal system | 2.31e-10 | 48 |
nephron epithelium | 2.82e-10 | 15 |
renal tubule | 2.82e-10 | 15 |
nephron tubule | 2.82e-10 | 15 |
nephron | 2.82e-10 | 15 |
uriniferous tubule | 2.82e-10 | 15 |
nephrogenic mesenchyme | 2.82e-10 | 15 |
cortex of kidney | 4.42e-10 | 12 |
renal parenchyma | 4.42e-10 | 12 |
simple squamous epithelium | 6.70e-10 | 22 |
urothelium | 9.43e-10 | 5 |
excretory tube | 1.54e-09 | 16 |
kidney epithelium | 1.54e-09 | 16 |
squamous epithelium | 1.85e-08 | 25 |
transitional epithelium | 4.22e-08 | 6 |
cortex | 7.84e-08 | 15 |
epithelium | 3.05e-07 | 306 |
endothelial tube | 3.83e-07 | 9 |
arterial system endothelium | 3.83e-07 | 9 |
endothelium of artery | 3.83e-07 | 9 |
cell layer | 4.56e-07 | 309 |
vein | 5.13e-07 | 9 |
venous blood vessel | 5.13e-07 | 9 |
venous system | 5.13e-07 | 9 |