FFCP PHASE1:Mm9::chr5:67388270..67388307,+: Difference between revisions
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{{FFCP|EntrezGene=77569|HGNC=|MCL_coexpression_id=22|UniProt=|association_with_transcript=-23bp_to_ENSMUST00000137394_5end|description=CAGE_peak_8_at_Limch1_5end|id=chr5:67388270..67388307,+|ontology_enrichment_celltype=CL:0000117!2.09e-10!23;CL:0000337!2.09e-10!23;CL:0000221!1.88e-07!44;CL:0000133!1.88e-07!44;CL:0002319!2.30e-07!43;CL:0000540!4.04e-07!33;CL:0000047!4.04e-07!33;CL:0000031!4.04e-07!33;CL:0000404!4.04e-07!33|ontology_enrichment_celltype_v019_2=CL:0000117,1.20e-19,23;CL:0000337,1.20e-19,23;CL:0002609,5.65e-13,6;CL:0000540,2.30e-12,33;CL:0000047,2.30e-12,33;CL:0000031,2.30e-12,33;CL:0000404,2.30e-12,33;CL:0002319,4.96e-11,43;CL:0000221,1.13e-10,44;CL:0000133,1.13e-10,44;CL:0000393,8.21e-10,39;CL:0000211,8.21e-10,39;CL:0002613,3.87e-07,3;CL:0002608,4.43e-07,3;CL:0000120,7.59e-07,3|ontology_enrichment_disease=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=UBERON:0003056!6.44e-11!49;UBERON:0000073!7.19e-11!75;UBERON:0001016!7.19e-11!75;UBERON:0002020!1.49e-10!34;UBERON:0001049!1.49e-10!52;UBERON:0005068!1.49e-10!52;UBERON:0006241!1.49e-10!52;UBERON:0007135!1.49e-10!52;UBERON:0001017!1.53e-10!73;UBERON:0005743!1.53e-10!73;UBERON:0003080!3.76e-10!40;UBERON:0002780!5.74e-10!39;UBERON:0001890!5.74e-10!39;UBERON:0006240!5.74e-10!39;UBERON:0002346!3.08e-09!71;UBERON:0003075!3.08e-09!71;UBERON:0007284!3.08e-09!71;UBERON:0000955!3.49e-09!50;UBERON:0006238!3.49e-09!50;UBERON:0000033!6.34e-09!63;UBERON:0002616!8.81e-09!49;UBERON:0002791!2.80e-08!29;UBERON:0003528!2.80e-08!29;UBERON:0001893!2.80e-08!29;UBERON:0004121!4.13e-08!102;UBERON:0000924!4.13e-08!102;UBERON:0006601!4.13e-08!102;UBERON:0000956!4.52e-07!21;UBERON:0001869!4.52e-07!21;UBERON:0000203!4.52e-07!21|ontology_enrichment_uberon_v019_2=UBERON:0002020,1.54e-13,34;UBERON:0001049,1.06e-11,52;UBERON:0005068,1.06e-11,52;UBERON:0006241,1.06e-11,52;UBERON:0007135,1.06e-11,52;UBERON:0000073,4.58e-11,54;UBERON:0001017,7.57e-11,73;UBERON:0001016,2.19e-10,75;UBERON:0002780,1.50e-09,39;UBERON:0001890,1.50e-09,39;UBERON:0006240,1.50e-09,39;UBERON:0003528,1.72e-09,29;UBERON:0002791,1.72e-09,29;UBERON:0001893,1.72e-09,29;UBERON:0003080,3.28e-09,40;UBERON:0002616,1.44e-08,46;UBERON:0002346,1.69e-08,64;UBERON:0003075,1.69e-08,64;UBERON:0007284,1.69e-08,64;UBERON:0000955,2.70e-08,47;UBERON:0006238,2.70e-08,47;UBERON:0000369,3.28e-07,5;UBERON:0002435,3.28e-07,5;UBERON:0000204,3.28e-07,5;UBERON:0010082,3.28e-07,5;UBERON:0004121,6.92e-07,95;UBERON:0000924,6.92e-07,95;UBERON:0006601,6.92e-07,95;UBERON:0002102,7.79e-07,7;UBERON:0004710,7.79e-07,7;UBERON:0005419,7.79e-07,7;UBERON:0005417,7.79e-07,7;UBERON:0005729,7.79e-07,7;UBERON:0010371,8.12e-07,73;UBERON:0003056,8.55e-07,49|phase1_expression=0,0,0,0,0.500895729946347,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.30815093828268,0.219686182734472,0.388859798148567,1.39986421625363,0,0,0,0.336093799142464,0,0.573066879877513,0,2.83243045203437,2.11596391708813,2.53532561402472,0.338844532069132,0.889294796111139,0,0,0,0.599200221036809,0,5.70292867696627,5.53524347159932,5.8890989178387,1.14260393761521,0.220868540951614,4.04219637409348,2.68367318851062,2.75765635983006,0,0.255374676170375,0.614426133024974,2.63772575460388,2.92760459527711,4.16730696445408,0.279182999001381,0,0.15279824777681,1.47314292736834,2.13557521198654,2.05039390407831,0.302904773332736,0.453429360640713,0,0,0,0,0,0,0,0,0,0,0.281686839553361,0,0,0,0,0.253359865475099,0,0,0,0,0,0.304465478312141,0,0.150722640552623,0.117588707135705,0,0,0.144599356919912,0,0.161766849947409,0,0,0,0,0,0,0,0,0,0.449371918214468,0,5.15182843662744,0.695297280769106,1.02286182932132,0.41557608911912,0.162241263067758,0.611036183101898,0.124406970610093,0,0.210441855886474,0.910843100738926,0,0.720248519221397,0.452114453507145,0.680364991513279,0.640568601424249,0.562210347358373,0,0.646703978798527,2.45837904218165,1.93546236580344,2.41115305670332,1.94633074457919,1.39300866608867,0.61734640922383,0,0,0,0,0,0.469052119962192,0.36012412292203,0.23674473558521,0,0,0.232533944750408,0.536546802799238,0.583826711835847,0.493679549740441,0,0,0,0,0,0.420579897128254,5.9684675179985,0,0,1.06644125267617,0.928946687441754,0.257734922644187,0.605050573870028,0,0,0,0.494096864172033,0,0,0,0,0,0,0.379335801906163,0.228497025219458,0,0.407302655690628,0.969762435838129,0.140271639780637,0,0,0,0,0,0.333690211432188,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.568474235311454,0.651859905768103,0.339490171550376,0.704070744865506,0.502518772325447,0.476087281772027,0.195133647857799,0,0.221464689648775,0.478364305972461,0.163863314715738,0,0,0,0,0,0,0.160550589987792,0.117211686592203,0,0,0.631016438832513,0,0,0,0.445597348164788,0,0.404810701674894,0,0.395287777946524,0.963963949265421,0,1.06839362200353,0.488660878060728,0.164970122972535,0,0.242780636154981,0,0.377210159511796,0.295301892880773,0.614870295887855,0,0,0.356497378384721,0,0,0,0.340439605753788,1.26042765821917,0.129358683782755,0.643011105094777,1.06404140185364,1.24858172321449,0.822745103010605,0,0.23467170806371,0.42366414172764,0,0,0.161464426695906,0.120625849856312,0,0,0,0,0,0.412773735926445,0,0,0,0,0,0,0,0,1.10717597753397,0,0.108005340821801,0.209088296014469,0.218362563746178,0.269728692769641,0.0826534557253359,0.26175594198403,0,0,0,0,0,0,0.258319646955462,0,0.117357238645754,0,0.209718688851422,0.241584120826006,0,0,0,0,0.129920822977795,0.179026695667481,0,0,0,0,0,0,0,0,0,0,1.77588762699252,2.87084341150322,0.671538465456314,0,0.187682475451182,0,0,0,1.6942555278512,0.920650473014354,1.14579102687879,0.515559547031063,0.685082519770642,0.755393897389701,0,0,0.453142408984205,0,0.830298780673413,0.399024873401031,1.02440163452481,0.972426868273176,1.04806581313991,0.183843508450014,1.33348036680969,0.824140228955577,0.320919209591815,1.51618327058278,0.50695859978048,0.754505365544305,0.749132059759059,1.08842759088278,0.516919220600519,0,1.39061191133827,0.38581844092741,0.412085900803307,1.47198920134397,0.685738504770831,1.06485483695602,1.1921809497366,0.436039249896986,0.941093804153306,0.761531471025089,0.73171189149109,1.05227884575137,0.950628796921032,1.68342681497322,0.474540072496697,0.689531376628944,1.22769312950907,0.619747364743864,0.964533054905707,1.24905288968973,0.701794825336225,1.07435527024149,0.191288332068843,0,0.463735671240843|short_description=p8@Limch1}} | {{FFCP | ||
|DHSsupport=NA | |||
|DPIdataset=NA | |||
|EntrezGene=77569 | |||
|HGNC= | |||
|MCL_coexpression_id=22 | |||
|TSSclassifier=NA | |||
|UniProt= | |||
|association_with_transcript=-23bp_to_ENSMUST00000137394_5end | |||
|cluster_id=chr5:67388270..67388307,+ | |||
|description=CAGE_peak_8_at_Limch1_5end | |||
|id=chr5:67388270..67388307,+ | |||
|ontology_enrichment_celltype=CL:0000117!2.09e-10!23;CL:0000337!2.09e-10!23;CL:0000221!1.88e-07!44;CL:0000133!1.88e-07!44;CL:0002319!2.30e-07!43;CL:0000540!4.04e-07!33;CL:0000047!4.04e-07!33;CL:0000031!4.04e-07!33;CL:0000404!4.04e-07!33 | |||
|ontology_enrichment_celltype_v019_2=CL:0000117,1.20e-19,23;CL:0000337,1.20e-19,23;CL:0002609,5.65e-13,6;CL:0000540,2.30e-12,33;CL:0000047,2.30e-12,33;CL:0000031,2.30e-12,33;CL:0000404,2.30e-12,33;CL:0002319,4.96e-11,43;CL:0000221,1.13e-10,44;CL:0000133,1.13e-10,44;CL:0000393,8.21e-10,39;CL:0000211,8.21e-10,39;CL:0002613,3.87e-07,3;CL:0002608,4.43e-07,3;CL:0000120,7.59e-07,3 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0003056!6.44e-11!49;UBERON:0000073!7.19e-11!75;UBERON:0001016!7.19e-11!75;UBERON:0002020!1.49e-10!34;UBERON:0001049!1.49e-10!52;UBERON:0005068!1.49e-10!52;UBERON:0006241!1.49e-10!52;UBERON:0007135!1.49e-10!52;UBERON:0001017!1.53e-10!73;UBERON:0005743!1.53e-10!73;UBERON:0003080!3.76e-10!40;UBERON:0002780!5.74e-10!39;UBERON:0001890!5.74e-10!39;UBERON:0006240!5.74e-10!39;UBERON:0002346!3.08e-09!71;UBERON:0003075!3.08e-09!71;UBERON:0007284!3.08e-09!71;UBERON:0000955!3.49e-09!50;UBERON:0006238!3.49e-09!50;UBERON:0000033!6.34e-09!63;UBERON:0002616!8.81e-09!49;UBERON:0002791!2.80e-08!29;UBERON:0003528!2.80e-08!29;UBERON:0001893!2.80e-08!29;UBERON:0004121!4.13e-08!102;UBERON:0000924!4.13e-08!102;UBERON:0006601!4.13e-08!102;UBERON:0000956!4.52e-07!21;UBERON:0001869!4.52e-07!21;UBERON:0000203!4.52e-07!21 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002020,1.54e-13,34;UBERON:0001049,1.06e-11,52;UBERON:0005068,1.06e-11,52;UBERON:0006241,1.06e-11,52;UBERON:0007135,1.06e-11,52;UBERON:0000073,4.58e-11,54;UBERON:0001017,7.57e-11,73;UBERON:0001016,2.19e-10,75;UBERON:0002780,1.50e-09,39;UBERON:0001890,1.50e-09,39;UBERON:0006240,1.50e-09,39;UBERON:0003528,1.72e-09,29;UBERON:0002791,1.72e-09,29;UBERON:0001893,1.72e-09,29;UBERON:0003080,3.28e-09,40;UBERON:0002616,1.44e-08,46;UBERON:0002346,1.69e-08,64;UBERON:0003075,1.69e-08,64;UBERON:0007284,1.69e-08,64;UBERON:0000955,2.70e-08,47;UBERON:0006238,2.70e-08,47;UBERON:0000369,3.28e-07,5;UBERON:0002435,3.28e-07,5;UBERON:0000204,3.28e-07,5;UBERON:0010082,3.28e-07,5;UBERON:0004121,6.92e-07,95;UBERON:0000924,6.92e-07,95;UBERON:0006601,6.92e-07,95;UBERON:0002102,7.79e-07,7;UBERON:0004710,7.79e-07,7;UBERON:0005419,7.79e-07,7;UBERON:0005417,7.79e-07,7;UBERON:0005729,7.79e-07,7;UBERON:0010371,8.12e-07,73;UBERON:0003056,8.55e-07,49 | |||
|phase1_expression=0,0,0,0,0.500895729946347,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.30815093828268,0.219686182734472,0.388859798148567,1.39986421625363,0,0,0,0.336093799142464,0,0.573066879877513,0,2.83243045203437,2.11596391708813,2.53532561402472,0.338844532069132,0.889294796111139,0,0,0,0.599200221036809,0,5.70292867696627,5.53524347159932,5.8890989178387,1.14260393761521,0.220868540951614,4.04219637409348,2.68367318851062,2.75765635983006,0,0.255374676170375,0.614426133024974,2.63772575460388,2.92760459527711,4.16730696445408,0.279182999001381,0,0.15279824777681,1.47314292736834,2.13557521198654,2.05039390407831,0.302904773332736,0.453429360640713,0,0,0,0,0,0,0,0,0,0,0.281686839553361,0,0,0,0,0.253359865475099,0,0,0,0,0,0.304465478312141,0,0.150722640552623,0.117588707135705,0,0,0.144599356919912,0,0.161766849947409,0,0,0,0,0,0,0,0,0,0.449371918214468,0,5.15182843662744,0.695297280769106,1.02286182932132,0.41557608911912,0.162241263067758,0.611036183101898,0.124406970610093,0,0.210441855886474,0.910843100738926,0,0.720248519221397,0.452114453507145,0.680364991513279,0.640568601424249,0.562210347358373,0,0.646703978798527,2.45837904218165,1.93546236580344,2.41115305670332,1.94633074457919,1.39300866608867,0.61734640922383,0,0,0,0,0,0.469052119962192,0.36012412292203,0.23674473558521,0,0,0.232533944750408,0.536546802799238,0.583826711835847,0.493679549740441,0,0,0,0,0,0.420579897128254,5.9684675179985,0,0,1.06644125267617,0.928946687441754,0.257734922644187,0.605050573870028,0,0,0,0.494096864172033,0,0,0,0,0,0,0.379335801906163,0.228497025219458,0,0.407302655690628,0.969762435838129,0.140271639780637,0,0,0,0,0,0.333690211432188,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.568474235311454,0.651859905768103,0.339490171550376,0.704070744865506,0.502518772325447,0.476087281772027,0.195133647857799,0,0.221464689648775,0.478364305972461,0.163863314715738,0,0,0,0,0,0,0.160550589987792,0.117211686592203,0,0,0.631016438832513,0,0,0,0.445597348164788,0,0.404810701674894,0,0.395287777946524,0.963963949265421,0,1.06839362200353,0.488660878060728,0.164970122972535,0,0.242780636154981,0,0.377210159511796,0.295301892880773,0.614870295887855,0,0,0.356497378384721,0,0,0,0.340439605753788,1.26042765821917,0.129358683782755,0.643011105094777,1.06404140185364,1.24858172321449,0.822745103010605,0,0.23467170806371,0.42366414172764,0,0,0.161464426695906,0.120625849856312,0,0,0,0,0,0.412773735926445,0,0,0,0,0,0,0,0,1.10717597753397,0,0.108005340821801,0.209088296014469,0.218362563746178,0.269728692769641,0.0826534557253359,0.26175594198403,0,0,0,0,0,0,0.258319646955462,0,0.117357238645754,0,0.209718688851422,0.241584120826006,0,0,0,0,0.129920822977795,0.179026695667481,0,0,0,0,0,0,0,0,0,0,1.77588762699252,2.87084341150322,0.671538465456314,0,0.187682475451182,0,0,0,1.6942555278512,0.920650473014354,1.14579102687879,0.515559547031063,0.685082519770642,0.755393897389701,0,0,0.453142408984205,0,0.830298780673413,0.399024873401031,1.02440163452481,0.972426868273176,1.04806581313991,0.183843508450014,1.33348036680969,0.824140228955577,0.320919209591815,1.51618327058278,0.50695859978048,0.754505365544305,0.749132059759059,1.08842759088278,0.516919220600519,0,1.39061191133827,0.38581844092741,0.412085900803307,1.47198920134397,0.685738504770831,1.06485483695602,1.1921809497366,0.436039249896986,0.941093804153306,0.761531471025089,0.73171189149109,1.05227884575137,0.950628796921032,1.68342681497322,0.474540072496697,0.689531376628944,1.22769312950907,0.619747364743864,0.964533054905707,1.24905288968973,0.701794825336225,1.07435527024149,0.191288332068843,0,0.463735671240843 | |||
|short_description=p8@Limch1 | |||
}} |
Latest revision as of 04:18, 26 September 2015
Short description: | p8@Limch1 |
---|---|
Species: | Mouse (Mus musculus) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_8_at_Limch1_5end |
Coexpression cluster: | MCL_coexpression_mm9:22 |
Association with transcript: | -23bp_to_ENSMUST00000137394_5end |
EntrezGene: | Limch1 |
Link to Zenbu: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
CNS neuron (sensu Vertebrata) | 1.20e-19 | 23 |
neuroblast (sensu Vertebrata) | 1.20e-19 | 23 |
neuron of cerebral cortex | 5.65e-13 | 6 |
neuron | 2.30e-12 | 33 |
neuronal stem cell | 2.30e-12 | 33 |
neuroblast | 2.30e-12 | 33 |
electrically signaling cell | 2.30e-12 | 33 |
neural cell | 4.96e-11 | 43 |
ectodermal cell | 1.13e-10 | 44 |
neurectodermal cell | 1.13e-10 | 44 |
electrically responsive cell | 8.21e-10 | 39 |
electrically active cell | 8.21e-10 | 39 |
striatum neuron | 3.87e-07 | 3 |
hippocampal neuron | 4.43e-07 | 3 |
granule cell | 7.59e-07 | 3 |
Ontology term | p-value | n |
---|---|---|
gray matter | 1.54e-13 | 34 |
neural tube | 1.06e-11 | 52 |
neural rod | 1.06e-11 | 52 |
future spinal cord | 1.06e-11 | 52 |
neural keel | 1.06e-11 | 52 |
regional part of nervous system | 4.58e-11 | 54 |
central nervous system | 7.57e-11 | 73 |
nervous system | 2.19e-10 | 75 |
regional part of forebrain | 1.50e-09 | 39 |
forebrain | 1.50e-09 | 39 |
future forebrain | 1.50e-09 | 39 |
brain grey matter | 1.72e-09 | 29 |
regional part of telencephalon | 1.72e-09 | 29 |
telencephalon | 1.72e-09 | 29 |
anterior neural tube | 3.28e-09 | 40 |
regional part of brain | 1.44e-08 | 46 |
neurectoderm | 1.69e-08 | 64 |
neural plate | 1.69e-08 | 64 |
presumptive neural plate | 1.69e-08 | 64 |
brain | 2.70e-08 | 47 |
future brain | 2.70e-08 | 47 |
corpus striatum | 3.28e-07 | 5 |
striatum | 3.28e-07 | 5 |
ventral part of telencephalon | 3.28e-07 | 5 |
future corpus striatum | 3.28e-07 | 5 |
ectoderm-derived structure | 6.92e-07 | 95 |
ectoderm | 6.92e-07 | 95 |
presumptive ectoderm | 6.92e-07 | 95 |
forelimb | 7.79e-07 | 7 |
pectoral appendage | 7.79e-07 | 7 |
pectoral appendage bud | 7.79e-07 | 7 |
forelimb bud | 7.79e-07 | 7 |
forelimb/pectoral fin field | 7.79e-07 | 7 |
ecto-epithelium | 8.12e-07 | 73 |
pre-chordal neural plate | 8.55e-07 | 49 |