FF:10428-106D5: Difference between revisions

Latest revision as of 14:01, 3 June 2020

Name:	anaplastic carcinoma cell line:8305C
Species:	Human (Homo sapiens)
Library ID:	CNhs10745
Sample type:	cell lines
Genomic View:	UCSC
RefEX:	Specific genes
CAGEd-oPOSSUM:	link
ZENBU report :	link

Additional information

Sample information

strain	NA
tissue	thyroid
dev stage	NA
sex	unknown
age	NA
cell type	unclassifiable
cell line	8305C
company	RIKEN Bioresource centre
collaboration	Yukio Nakamura (RIKEN BRC)
External link for information	[{{{sample_info_link}}} {{{sample_info_link}}}]

RNA information

lot number	NA
catalog number	NA
sample type	total RNA
extraction protocol (Details)	OP-RNA-extraction-totalRNA-miRNeasy_Mini-v1.0

CAGE Accession numbers

Method		Sample accession id
CAGE		SAMD00005691

Library accession numbers

Library id		Method		Exp. accession id		Run accession id
CNhs10745		CAGE		DRX007826		DRR008698

Accession ID Hg19

Library id		BAM		CTSS
CNhs10745		DRZ000123		DRZ001508

Accession ID Hg38

Library id		BAM		CTSS
CNhs10745		DRZ011473		DRZ012858

Download raw sequence, BAM & CTSS

Hg19

Fasta	BAM	CTSS
download	download	donwload

Hg38

BAM	CTSS
download	donwload

Relative expression to median (log10)

Transcription factors with enriched expression in this sampleRanked list of transcription factor promoter expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.

Co-expression clusters with enriched expression in this sampleRanked list of co-expression cluster expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed. Analyst:NA link to dataset. data

Coexpression cluster	score
C0-CD14-Eosinophils-Neutrophils-Basophils-CD34-immature-Peripheral	0
C1-testis-epididymis-embryonic-medulla-pituitary-trachea-caudate	0
C10-occipital-temporal-parietal-brain-duodenum-Neurons-Neural	0
C100-rhabdomyosarcoma-gastric-pineal-Wilms-cervical-mesodermal-endometrial	0
C101-small-cerebellum-maxillary-colon-parietal-epididymis-merkel	0
C102-neuroblastoma-testicular-pituitary-carcinosarcoma-rectum-acantholytic-iPS	0
C103-CD4-CD8-Natural-Peripheral-Whole-Neutrophils-Basophils	0
C104-Mast-Basophils-immature-CD14-CD34-eye-Natural	0
C105-heart-skeletal-occipital-hippocampus-acute-Sebocyte-penis	-0.0569
C106-Hep2-epitheloid-placenta-cervical-rectal-anaplastic-glassy	0
C107-Neutrophils-CD14-Eosinophils-Monocytederived-Whole-Peripheral-blood	0
C108-breast-hepatoblastoma-MCF7-parotid-salivary-submaxillary-prostate	0
C109-Reticulocytes-non-acute-Hodgkin-Burkitt-retinoblastoma-lymphoma	-0.177
C11-cerebellum-medulla-pons-parietal-occipital-middle-medial	0
C110-leukemia-chronic-Eosinophils-acute-Whole-CD34-Lymphatic	0
C111-medulla-lung-trachea-testis-caudate-epididymis-throat	0
C112-gastric-pancreas-temporal-duodenum-small-extraskeletal-adrenal	0
C113-thyroid-throat-lung-lymph-small-colon-trachea	0
C114-teratocarcinoma-medulloblastoma-carcinosarcoma-iPS-anaplastic-acute-neuroblastoma	0
C115-pituitary-Neural-caudate-putamen-amygdala-medulla-hippocampus	0
C116-myeloma-xeroderma-tonsil-CD19-spleen-lymph-trachea	0
C117-serous-clear-kidney-neuroectodermal-mesothelioma-endometrial-Intestinal	0
C118-cerebellum-parietal-occipital-medial-middle-frontal-insula	0
C119-CD4-CD8-Natural-Neutrophils-CD14-Peripheral-CD19	0.0458
C12-Mast-Basophils-immature-chorionic-mature-CD14-Eosinophils	0
C120-immature-salivary-tongue-skin-cervical-CD14-CD34	0
C121-NK-Natural-CD8-CD4-anaplastic-chronic-B	0
C122-chronic-Reticulocytes-skeletal-leukemia-acute-colon-Tracheal	0
C123-CD19-Natural-CD8-CD4-CD14-Peripheral-Basophils	0
C124-small-temporal-duodenum-colon-gall-signet-Hepatocyte	0
C125-mucinous-alveolar-mesothelioma-Smooth-lung-CD14-Nucleus	0
C126-gastrointestinal-argyrophil-smallcell-merkel-bile-insula-brain	0
C127-maxillary-small-hepatoblastoma-hepatocellular-alveolar-colon-argyrophil	0
C128-testicular-choriocarcinoma-H9-teratocarcinoma-pancreatic-iPS-HES3GFP	0
C129-liver-Hepatocyte-colon-duodenum-temporal-testicular-small	0
C13-Neutrophils-Eosinophils-CD14-Monocytederived-Whole-Peripheral-CD4	0
C130-iPS-HES3GFP-H9-teratocarcinoma-testicular-colon-Alveolar	0
C131-lung-trachea-Alveolar-thyroid-umbilical-throat-skin	0
C132-acute-small-Dendritic-Macrophage-CD14-Neutrophils-Monocytederived	0
C133-signet-gall-small-kidney-colon-ductal-adenocarcinoma	0
C134-skeletal-diaphragm-tongue-throat-Skeletal-skin-penis	0
C135-neuroblastoma-retinoblastoma-carcinoid-choriocarcinoma-testicular-acute-rectum	0
C136-Wilms-extraskeletal-anaplastic-rhabdomyosarcoma-cholangiocellular-nonsmall-neuroectodermal	0
C137-large-ductal-melanoma-cervical-Endothelial-Smooth-chronic	0
C138-diffuse-Burkitt-lymphangiectasia-lymphoma-acute-CD19-pineal	0
C139-astrocytoma-skin-salivary-gall-serous-Mallassezderived-renal	0
C14-Whole-blood-Reticulocytes-liver-Neutrophils-Eosinophils-spleen	0
C140-Renal-Endothelial-Hepatic-Lymphatic-heart-lung-spleen	0
C141-Hodgkin-acute-thymus-chronic-vein-CD4-B	0
C142-Preadipocyte-Fibroblast-hepatic-Ewing-Adipocyte-Olfactory-Hair	0.0458
C143-Monocytederived-CD14-Macrophage-Dendritic-Basophils-CD14CD16-Osteoblast	0
C144-CD4-tonsil-NK-appendix-CD8-splenic-mycosis	0
C145-neuroblastoma-peripheral-neuroectodermal-neuroepithelioma-carcinoid-adult-extraskeletal	0
C146-lymphangiectasia-lymphoma-gall-lymph-tonsil-gastric-transitionalcell	0
C147-Neutrophils-Eosinophils-CD4-CD14-CD8-Natural-Peripheral	0.0458
C148-kidney-small-epididymis-pancreas-serous-duodenum-temporal	0
C149-occipital-medial-brain-amygdala-parietal-cerebral-cerebellum	0
C15-anaplastic-small-skeletal-neuroblastoma-parietal-temporal-tongue	0
C150-merkel-carcinoid-nonsmall-gastrointestinal-argyrophil-pineal-small	0
C151-CD14-Natural-Basophils-CD8-Eosinophils-CD4-Mast	0
C152-peripheral-neuroectodermal-neuroepithelioma-neuroblastoma-testicular-carcinoid-lung	0
C153-rhabdomyosarcoma-liposarcoma-pancreatic-somatostatinoma-Reticulocytes-lymphoma-testicular	0
C154-adenocarcinoma-Mesenchymal-Cardiac-small-sacrococcigeal-Smooth-Prostate	0
C155-pituitary-placenta-nonsmall-cervical-smallcell-choriocarcinoma-epitheloid	0
C156-plasma-splenic-hereditary-B-large-xeroderma-b	0
C157-testicular-H9-testis-iPS-teratocarcinoma-colon-trachea	0
C158-adrenal-gastric-temporal-parietal-duodenum-caudate-putamen	0
C159-choriocarcinoma-pancreatic-placenta-chorionic-testicular-bronchioalveolar-seminal	0
C16-medial-amygdala-occipital-parietal-olfactory-putamen-brain	0
C160-medulla-Hepatocyte-retina-corpus-liver-pineal-cerebral	0
C161-mesothelioma-Mesothelial-acute-mesenchymal-extraskeletal-renal-placenta	0
C162-spinal-locus-medulla-substantia-thalamus-globus-diencephalon	0
C163-Skeletal-skeletal-Pericytes-Hepatic-rhabdomyosarcoma-throat-mesenchymal	0
C164-signet-corpus-optic-mucinous-substantia-salivary-choriocarcinoma	0
C165-epithelioid-Adipocyte-mesothelioma-myxofibrosarcoma-lung-gastric-Mesothelial	0
C166-Macrophage-Monocytederived-Dendritic-adipose-lymph-CD14-lung	0
C167-Basophils-Mast-Eosinophils-Neutrophils-Peripheral-Whole-CD4	0
C168-Mast-CD14-immature-Basophils-Eosinophils-CD34-Peripheral	0
C169-hereditary-adult-gall-lymphangiectasia-chronic-b-choriocarcinoma	0
C17-Mast-CD14-Monocytederived-Lymphatic-Smooth-mesenchymal-Macrophage	0
C170-epitheloid-cervical-Hep2-keratoacanthoma-adult-neuroblastoma-signet	0
C171-merkel-neuroblastoma-pineal-retinoblastoma-carcinoid-small-eye	0
C172-chorionic-skeletal-tongue-amniotic-liver-gastrointestinal-Pericytes	0
C173-Adipocyte-mature-skin-left-Hepatocyte-Osteoblast-adipose	0
C174-CD14-Neutrophils-Smooth-mesothelioma-embryonic-Monocytederived-Eosinophils	0
C175-Eosinophils-Neutrophils-CD4-Basophils-CD19-CD8-Natural	0.00521
C176-Eosinophils-Neutrophils-Mast-CD14-CD4-Basophils-CD19	0.0389
C177-melanoma-Melanocyte-mesenchymal-retina-Mallassezderived-Gingival-squamous	0
C178-spleen-liver-Hepatocyte-b-lymph-vein-thymus	0
C179-CD19-Peripheral-lymphoma-blood-lymph-spleen-tonsil	0
C18-CD4-CD8-thymus-Whole-Peripheral-Natural-blood	0
C180-skeletal-heart-Hepatocyte-acute-occipital-hippocampus-middle	-0.186
C181-liposarcoma-somatostatinoma-neuroblastoma-mesothelioma-nonsmall-small-Alveolar	0
C182-renal-mature-mesothelioma-lung-Mammary-Adipocyte-acute	0
C183-acute-non-CD34-diffuse-CD133-myeloma-Burkitt	0
C184-somatostatinoma-smallcell-nonsmall-small-gastrointestinal-pineal-thyroid	0
C185-small-adrenal-gastric-Mesenchymal-acute-HES3GFP-testis	0
C186-squamous-papillotubular-large-Tracheal-oral-Small-epidermoid	0
C187-migratory-immature-Dendritic-CD19-CD14-Monocytederived-Macrophage	0
C188-left-heart-tongue-skeletal-Skeletal-diaphragm-throat	0
C189-b-splenic-tonsil-CD19-lymph-appendix-spleen	0
C19-embryonic-testis-cord-chronic-CD14-NK-mesothelioma	0
C190-colon-small-rectum-duodenum-appendix-temporal-oral	0
C191-leiomyoblastoma-Mast-parietal-acute-bone-neuroepithelioma-embryonic	0
C192-Neutrophils-CD14-Peripheral-Eosinophils-CD8-Natural-CD4	0
C193-Mesenchymal-Adipocyte-mature-Cardiac-heart-CD14CD16-CD14	0
C194-MCF7-breast-prostate-Intestinal-diffuse-Wilms-Alveolar	0
C195-Small-Gingival-Bronchial-Smooth-mesenchymal-Urothelial-Tracheal	0
C196-testicular-iPS-H9-teratocarcinoma-HES3GFP-choriocarcinoma-endometrial	0
C197-tongue-esophagus-tonsil-salivary-cervix-nasal-Gingival	0
C198-Mesenchymal-Hair-Hepatic-Fibroblast-Smooth-tenocyte-Pericytes	0.0458
C199-glioblastoma-B-osteosarcoma-Fibroblast-heart-rhabdomyosarcoma-myxofibrosarcoma	0
C2-Eosinophils-Neutrophils-CD14-Whole-Basophils-Peripheral-Mast	0
C20-heart-left-skeletal-diaphragm-tongue-umbilical-throat	0
C200-seminal-Cardiac-Smooth-Hair-submaxillary-Neutrophils-mixed	-0.129
C201-colon-small-adenocarcinoma-duodenum-temporal-signet-gall	0
C202-salivary-skin-penis-tongue-uterus-cervical-immature	0
C203-acute-NK-chronic-CD133-lymphoma-immature-Dendritic	0
C204-Smooth-nasal-CD4-CD19-CD8-CD14-CD34	0
C205-mycosis-cord-hairy-xeroderma-CD4-B-b	0
C206-melanoma-somatostatinoma-nonsmall-small-neuroblastoma-smallcell-pituitary	0
C207-Corneal-Keratinocyte-Esophageal-Mammary-Bronchial-Urothelial-Sebocyte	0
C208-skin-amniotic-papillotubular-salivary-umbilical-Alveolar-serous	0
C209-acute-myelodysplastic-CD34-granulocyte-CD133-liver-spleen	0
C21-cord-mycosis-hairy-xeroderma-adult-CD4-anaplastic	0
C210-Burkitt-lymphoma-appendix-acute-diffuse-CD19-tonsil	0
C211-small-Hepatocyte-liver-colon-temporal-duodenum-kidney	0
C212-chronic-acute-Whole-Reticulocytes-leukemia-blood-CD34	0
C213-CD14-Natural-CD8-CD4-Basophils-Eosinophils-Peripheral	0
C214-Neurons-Neural-duodenum-temporal-occipital-parietal-brain	0
C215-chronic-acute-peripheral-Hepatocyte-osteosarcoma-NK-immature	0
C216-osteosarcoma-Smooth-Mesenchymal-large-neuroectodermal-acute-CD34	0
C217-carcinoid-neuroectodermal-mature-mesodermal-colon-acute-occipital	0
C218-tonsil-lymph-CD19-spleen-colon-appendix-salivary	0
C219-nasal-Basophils-amniotic-Melanocyte-CD14-Osteoblast-duodenum	0
C22-CD4-CD8-Natural-Basophils-CD14-Peripheral-CD19	0
C220-Adipocyte-mature-left-breast-skin-liver-adipose	0
C221-alveolar-Osteoblast-Myoblast-mesenchymal-liposarcoma-Smooth-hepatocellular	0
C222-Melanocyte-Tracheal-Neutrophils-seminal-Smooth-Hair-Chondrocyte	-0.0824
C223-Chondrocyte-basal-renal-Fibroblast-Smooth-spindle-Synoviocyte	0
C224-clear-serous-pleomorphic-choriocarcinoma-mesothelioma-amniotic-renal	0
C225-ductal-alveolar-giant-prostate-salivary-squamous-Tracheal	0
C226-Corneal-Keratinocyte-Esophageal-Urothelial-Mammary-Bronchial-Tracheal	0
C227-chorionic-amniotic-Mesenchymal-Placental-gastric-diaphragm-tongue	0
C228-colon-Intestinal-Prostate-hepatoblastoma-hepatocellular-testis-adult	0
C229-Mesenchymal-CD4-Melanocyte-acute-skeletal-left-heart	0
C23-CD4-CD8-Natural-Peripheral-Basophils-CD19-CD14	0
C230-aorta-normal-heart-penis-osteosarcoma-basal-lung	0
C231-Mesothelial-mesenchymal-mesothelioma-Fibroblast-Preadipocyte-leiomyoma-mycosis	0
C232-teratocarcinoma-HES3GFP-H9-iPS-testicular-neuroblastoma-cerebellum	0
C233-uterus-cervix-ovary-epididymis-colon-rectum-MCF7	0
C234-oral-epidermoid-malignant-cervical-ductal-lung-keratoacanthoma	0
C235-Intestinal-Prostate-liver-colon-small-kidney-pancreas	0
C236-CD14-Neutrophils-Monocytederived-renal-Eosinophils-testis-mesothelioma	0
C237-acute-breast-testicular-hepatoblastoma-chronic-argyrophil-Bronchial	0
C238-stomach-gall-breast-duodenum-temporal-MCF7-smallcell	0
C239-CD4-lymphangiectasia-CD8-NK-mycosis-Renal-hairy	0
C24-pineal-eye-retina-retinoblastoma-medulloblastoma-small-cerebral	0
C240-Adipocyte-Preadipocyte-Osteoblast-Chondrocyte-tenocyte-Synoviocyte-mesenchymal	0
C241-Reticulocytes-chronic-Tracheal-Hodgkin-Endothelial-Hair-thymus	-0.45
C242-acute-Chondrocyte-myelodysplastic-granulocyte-biphenotypic-Fibroblast-stomach	0
C243-Chondrocyte-trachea-Synoviocyte-mesodermal-renal-Fibroblast-Ewing	0
C244-CD14-Monocytederived-Hepatocyte-heart-Neutrophils-acute-Macrophage	0
C245-prostate-penis-salivary-esophagus-kidney-Neutrophils-Pancreatic	0
C246-Neutrophils-Eosinophils-Whole-CD14-CD14CD16-Basophils-migratory	0
C247-pons-locus-medulla-spinal-paracentral-medial-occipital	0
C248-iPS-Aortic-Hep2-amygdala-acute-medial-Myoblast	0
C249-nonsmall-small-smallcell-occipital-somatostatinoma-maxillary-medial	0
C25-small-colon-temporal-duodenum-liver-Hepatocyte-gall	0
C250-Mast-Neutrophils-CD14-Eosinophils-CD8-Peripheral-CD4	0
C251-gall-tonsil-trachea-CD14-salivary-throat-tongue	0
C252-hepatic-Olfactory-sacrococcigeal-leiomyoma-normal-Synoviocyte-glioblastoma	0
C253-spleen-rhabdomyosarcoma-Hepatocyte-small-uterus-liver-rectum	0
C254-prostate-rhabdomyosarcoma-seminal-Fibroblast-transitionalcell-Smooth-Iris	0
C255-Wilms-leiomyoblastoma-kidney-adrenal-MCF7-epithelioid-Mast	0
C256-occipital-caudate-amygdala-medial-thalamus-hippocampus-medulla	0
C257-pineal-insula-frontal-occipital-temporal-medial-paracentral	0
C258-hepatoblastoma-hepatocellular-signet-colon-Intestinal-Prostate-gastric	0
C259-Preadipocyte-Adipocyte-Fibroblast-Chondrocyte-tenocyte-normal-Ewing	0.0873
C26-Eosinophils-Neutrophils-CD14-CD14CD16-Basophils-Monocytederived-Whole	0
C260-acute-chronic-Natural-NK-Basophils-biphenotypic-blood	0
C261-locus-medial-parietal-pons-diencephalon-olfactory-spinal	0
C262-breast-MCF7-skeletal-Reticulocytes-mucinous-hepatoblastoma-Wilms	0
C263-cervical-keratoacanthoma-tongue-skin-esophagus-throat-tonsil	0
C264-giant-keratoacanthoma-colon-fibrosarcoma-HES3GFP-Hep2-acute	0
C265-CD4-Eosinophils-CD14-Natural-CD19-Basophils-CD8	0.0351
C266-acute-chronic-leukemia-small-choriocarcinoma-hepatoma-Mast	0
C267-pancreatic-placenta-choriocarcinoma-testicular-teratocarcinoma-chorionic-clear	0
C268-Mallassezderived-Urothelial-Gingival-Small-Bronchial-Tracheal-Prostate	0
C269-Basophils-Mast-Eosinophils-mature-CD14-chorionic-CD4	0.0458
C27-pancreas-temporal-duodenum-salivary-ductus-umbilical-lung	0
C270-CD4-Fibroblast-acute-iPS-Aortic-CD34-Smooth	0.00558
C271-pineal-spinal-locus-globus-medulla-thalamus-cerebellum	0
C272-CD19-CD4-CD8-Whole-Peripheral-lymph-tonsil	0
C273-Neutrophils-CD14-Eosinophils-Monocytederived-CD4-Natural-Mast	0.0458
C274-CD14-Mast-immature-Basophils-mature-vagina-Hepatocyte	0
C275-pons-medulla-cerebellum-locus-thalamus-diencephalon-spinal	0
C276-mesothelioma-kidney-renal-small-clear-cerebellum-Renal	0
C277-mesothelioma-epithelioid-thyroid-extraskeletal-alveolar-glioblastoma-adenocarcinoma	0
C278-amygdala-hippocampus-insula-medial-putamen-temporal-olfactory	0
C279-parietal-cerebellum-occipital-temporal-middle-duodenum-medial	0
C28-thymus-acute-vein-Hodgkin-chronic-throat-Dendritic	0
C280-Mast-Natural-CD19-CD8-Eosinophils-CD34-CD4	0
C281-Hodgkin-Reticulocytes-chronic-NK-acute-retinoblastoma-small	-0.334
C282-acute-B-tonsil-CD19-submaxillary-lymph-throat	0
C283-tenocyte-Chondrocyte-mesenchymal-Macrophage-pleomorphic-Synoviocyte-cholangiocellular	0
C284-parietal-occipital-medial-temporal-olfactory-locus-hippocampus	0
C285-cervical-Hep2-small-colon-temporal-duodenum-bronchogenic	0
C286-cerebellum-occipital-optic-parietal-globus-caudate-medial	0
C287-Hepatocyte-Chondrocyte-Adipocyte-Synoviocyte-liver-tenocyte-mesenchymal	0
C288-Chondrocyte-Renal-Pericytes-Fibroblast-aorta-Smooth-Meningeal	0
C289-chorionic-skeletal-heart-Mast-amniotic-granulosa-left	0
C29-mature-adipose-Adipocyte-breast-Lymphatic-vein-heart	0
C290-Eosinophils-CD14-Basophils-Mast-CD4-CD8-immature	0.0494
C291-spinal-substantia-retina-medulla-tongue-skeletal-trachea	0
C292-Mesenchymal-skin-umbilical-Adipocyte-mesenchymal-Chondrocyte-skeletal	0
C293-CD14-CD14CD16-Basophils-Peripheral-immature-Eosinophils-CD34	0
C294-CD14-Macrophage-Monocytederived-CD14CD16-Neutrophils-Basophils-Peripheral	0
C295-Fibroblast-Smooth-Myoblast-Chondrocyte-hepatic-Synoviocyte-Preadipocyte	0.0694
C296-gall-small-mesothelioma-acute-bronchioalveolar-epidermoid-mixed	0
C297-Eosinophils-CD4-Basophils-Natural-Neutrophils-CD8-Peripheral	0
C298-small-optic-substantia-thalamus-diencephalon-globus-occipital	0
C299-CD14CD16-Eosinophils-Neutrophils-CD14-Whole-Basophils-blood	0
C3-occipital-temporal-insula-medial-postcentral-frontal-amygdala	0
C30-thyroid-throat-mesothelioma-mucinous-trachea-chorionic-mesenchymal	0
C300-CD4-CD8-NK-Natural-blood-mycosis-Basophils	0
C301-Smooth-mesenchymal-Endothelial-Hepatic-basal-hepatic-chorionic	0.16
C302-acute-peripheral-Neutrophils-NK-myelodysplastic-CD34-carcinoid	0
C303-CD14-Basophils-Peripheral-Eosinophils-CD14CD16-Neutrophils-Whole	0
C305-heart-skeletal-smooth-left-bladder-penis-esophagus	0
C31-skeletal-tongue-diaphragm-throat-penis-skin-trachea	0
C32-middle-occipital-parietal-hippocampus-amygdala-medial-olfactory	0
C33-Reticulocytes-liver-Whole-blood-chronic-acute-spleen	0
C34-placenta-chorionic-choriocarcinoma-mesothelioma-Wilms-Smooth-bile	0
C35-caudate-putamen-diencephalon-nucleus-globus-thalamus-insula	0
C36-B-b-splenic-plasma-xeroderma-adrenal-Burkitt	0
C37-salivary-submaxillary-parotid-seminal-tongue-ductus-trachea	0
C38-extraskeletal-rhabdomyosarcoma-adrenal-rectal-mesothelioma-lung-Wilms	0
C39-epididymis-ductus-seminal-testis-acute-thyroid-CD133	0
C4-optic-corpus-substantia-medulla-spinal-thalamus-globus	0
C40-eye-retina-Lens-pineal-tongue-retinoblastoma-small	0
C41-retina-eye-medulla-Retinal-medulloblastoma-kidney-pineal	0
C42-small-lung-maxillary-pharyngeal-Mesenchymal-Wilms-colon	0
C43-ductus-seminal-duodenum-temporal-gall-prostate-bladder	0
C44-Dendritic-CD19-CD133-granulocyte-acute-thymus-immature	0
C45-testicular-choriocarcinoma-H9-teratocarcinoma-Wilms-pancreatic-iPS	0
C46-acute-Hodgkin-thymus-CD8-chronic-CD4-merkel	0
C47-CD19-Burkitt-acute-xeroderma-tonsil-lymphoma-appendix	0
C48-smooth-bladder-esophagus-colon-penis-aorta-uterus	0
C49-H9-iPS-testicular-HES3GFP-teratocarcinoma-hepatoblastoma-choriocarcinoma	0
C5-Hepatocyte-liver-hepatocellular-Intestinal-kidney-small-pancreas	0
C50-chorionic-placenta-amniotic-migratory-smallcell-chronic-choriocarcinoma	0
C51-kidney-mesothelioma-renal-signet-gall-lung-pancreas	0
C52-adult-NK-chronic-cord-testis-embryonic-myeloma	0
C53-medulloblastoma-pineal-retinoblastoma-small-retina-eye-pituitary	0
C54-Dendritic-Macrophage-Monocytederived-CD14-leiomyoma-adipose-immature	0
C55-hepatocellular-Intestinal-liver-Prostate-fibrosarcoma-Hepatocyte-hepatoblastoma	0
C56-heart-left-umbilical-skeletal-penis-diaphragm-tongue	0
C57-Neutrophils-Eosinophils-Whole-CD4-CD8-CD19-Natural	0
C58-Melanocyte-melanoma-retina-Retinal-eye-migratory-H9	0
C59-Smooth-Fibroblast-Mesenchymal-tenocyte-Ewing-skin-hepatic	0
C6-CD14-Eosinophils-Basophils-Peripheral-CD34-Natural-immature	0
C60-esophagus-tonsil-throat-tongue-uterus-cervix-cervical	0
C61-migratory-Dendritic-immature-Macrophage-xeroderma-cord-b	0
C62-Burkitt-tonsil-CD19-submaxillary-spleen-salivary-lymph	0
C63-neuroectodermal-neuroblastoma-carcinoid-peripheral-chronic-neuroepithelioma-acute	0
C64-Mast-chronic-acute-immature-chorionic-Basophils-Dendritic	0
C65-CD14-Eosinophils-Monocytederived-Basophils-immature-Macrophage-Neutrophils	0
C66-cerebellum-middle-occipital-parietal-medial-amygdala-hippocampus	0
C67-CD14-Monocytederived-Macrophage-dura-Dendritic-spleen-lung	0
C68-amniotic-chorionic-Placental-salivary-placenta-tongue-mesothelioma	0
C69-anaplastic-CD14-cord-hairy-mycosis-adult-NK	0
C7-CD14-Eosinophils-Neutrophils-Smooth-Basophils-Macrophage-Mast	0
C70-parotid-submaxillary-salivary-throat-trachea-aorta-tongue	0
C71-Monocytederived-Macrophage-CD14-Dendritic-Osteoblast-leiomyoma-Prostate	0
C72-skeletal-tongue-throat-heart-diaphragm-penis-left	0
C73-pineal-eye-retina-caudate-cerebellum-left-parietal	0
C74-splenic-B-b-plasma-xeroderma-lymphoma-hairy	0
C75-Eosinophils-Natural-CD8-Basophils-CD14-CD4-Peripheral	0
C76-argyrophil-gastrointestinal-temporal-duodenum-neuroblastoma-merkel-smallcell	0
C77-Saos2-osteosarcoma-Neutrophils-Natural-Chondrocyte-Basophils-CD8	0
C78-lymphoma-plasma-tonsil-appendix-lymph-seminal-trachea	0
C79-chorionic-Chondrocyte-Cardiac-Smooth-Fibroblast-Preadipocyte-Mesenchymal	1.008
C8-Natural-CD8-Basophils-CD4-CD14-Peripheral-CD34	0
C80-immature-migratory-CD14-Dendritic-splenic-cord-Mast	0
C81-trachea-salivary-throat-aorta-eye-submaxillary-parotid	0
C82-Basophils-CD14-Eosinophils-Natural-Peripheral-immature-CD34	0
C83-choriocarcinoma-pancreatic-placenta-chorionic-HES3GFP-testicular-amniotic	0
C84-choriocarcinoma-pancreatic-Wilms-Mallassezderived-thymus-salivary-colon	0
C85-neuroblastoma-carcinoid-retinoblastoma-small-pineal-rhabdomyosarcoma-medulloblastoma	0
C86-colon-carcinoid-small-neuroectodermal-giant-large-neuroepithelioma	0
C87-retinoblastoma-left-nonsmall-heart-small-diaphragm-bronchogenic	0
C88-Melanocyte-melanoma-Macrophage-Mesenchymal-migratory-Dendritic-Monocytederived	0
C89-small-retinoblastoma-medulloblastoma-iPS-acantholytic-eye-bronchogenic	0
C9-skeletal-diaphragm-tongue-throat-penis-heart-left	0
C90-neuroectodermal-peripheral-neuroepithelioma-neuroblastoma-carcinoid-parietal-putamen	0
C91-Fibroblast-Smooth-mesenchymal-Mesothelial-Small-Preadipocyte-Hair	0
C92-CD14CD16-CD14-Eosinophils-Basophils-Neutrophils-Macrophage-Whole	0
C93-chronic-acute-leukemia-acantholytic-medulloblastoma-testis-papillotubular	0
C94-smallcell-adrenal-lung-nonsmall-small-somatostatinoma-teratocarcinoma	0
C95-lung-aorta-trachea-penis-Alveolar-throat-endometrioid	0
C96-non-acute-tonsil-spleen-Burkitt-lymphoma-appendix	0
C97-small-smallcell-gastrointestinal-argyrophil-putamen-duodenum-brain	0
C98-CD8-Natural-Basophils-blood-CD4-Peripheral-Whole	0
C99-hairy-mycosis-submaxillary-salivary-cord-kidney-parotid	0

Repeat families with enriched expression in this sampleSummary:Ranked list of repeat family expression in this sample relative tothe median expression in the FANTOM5 collection is shown. Value is log10transformed. Analyst:NA link to dataset. data

TFBS(DNA)motifs over-represented in proximal region of promoters active in this sample

JASPAR motifsSummary:Association of JASPAR motif to the promoter expression in thissample. Pearson's correlation between the number of TFBSs estimated byusing the position-weight matrix for each promoter and its expression isexpressed as Z-score by taking the ones based on random position-weightmatrix, and the tail probability of the normal distribution correspondingto the Z-score is taken as the resulting P-value. Lower P-value indicatesmore (non-random) association of the motif to promoter expression Analyst: Michiel de Hoon link to dataset. data

library id: CNhs10745

Jaspar motif	Logo	P-value
MA0002.2	MA0002.2	0.0593
MA0003.1	MA0003.1	0.0963
MA0004.1	MA0004.1	0.976
MA0006.1	MA0006.1	0.851
MA0007.1	MA0007.1	0.0708
MA0009.1	MA0009.1	0.477
MA0014.1	MA0014.1	0.776
MA0017.1	MA0017.1	5.2888e-4
MA0018.2	MA0018.2	0.00571
MA0019.1	MA0019.1	0.19
MA0024.1	MA0024.1	0.534
MA0025.1	MA0025.1	0.921
MA0027.1	MA0027.1	0.77
MA0028.1	MA0028.1	0.00372
MA0029.1	MA0029.1	0.451
MA0030.1	MA0030.1	0.247
MA0031.1	MA0031.1	0.0364
MA0035.2	MA0035.2	0.486
MA0038.1	MA0038.1	0.473
MA0039.2	MA0039.2	0.252
MA0040.1	MA0040.1	0.898
MA0041.1	MA0041.1	0.387
MA0042.1	MA0042.1	0.761
MA0043.1	MA0043.1	0.566
MA0046.1	MA0046.1	0.5
MA0047.2	MA0047.2	0.0559
MA0048.1	MA0048.1	0.255
MA0050.1	MA0050.1	4.22286e-8
MA0051.1	MA0051.1	1.10064e-6
MA0052.1	MA0052.1	0.0458
MA0055.1	MA0055.1	0.931
MA0057.1	MA0057.1	0.153
MA0058.1	MA0058.1	0.741
MA0059.1	MA0059.1	0.415
MA0060.1	MA0060.1	0.33
MA0061.1	MA0061.1	0.971
MA0062.2	MA0062.2	0.0838
MA0065.2	MA0065.2	2.61773e-4
MA0066.1	MA0066.1	0.043
MA0067.1	MA0067.1	0.0356
MA0068.1	MA0068.1	0.395
MA0069.1	MA0069.1	0.445
MA0070.1	MA0070.1	0.13
MA0071.1	MA0071.1	0.0125
MA0072.1	MA0072.1	0.18
MA0073.1	MA0073.1	0.261
MA0074.1	MA0074.1	0.998
MA0076.1	MA0076.1	0.00398
MA0077.1	MA0077.1	0.453
MA0078.1	MA0078.1	0.726
MA0079.2	MA0079.2	0.416
MA0080.2	MA0080.2	1.00156e-4
MA0081.1	MA0081.1	0.567
MA0083.1	MA0083.1	0.424
MA0084.1	MA0084.1	0.237
MA0087.1	MA0087.1	0.297
MA0088.1	MA0088.1	0.297
MA0090.1	MA0090.1	0.0237
MA0091.1	MA0091.1	0.0641
MA0092.1	MA0092.1	0.18
MA0093.1	MA0093.1	0.844
MA0099.2	MA0099.2	5.15885e-5
MA0100.1	MA0100.1	0.628
MA0101.1	MA0101.1	0.181
MA0102.2	MA0102.2	0.115
MA0103.1	MA0103.1	0.0469
MA0104.2	MA0104.2	0.752
MA0105.1	MA0105.1	0.12
MA0106.1	MA0106.1	0.288
MA0107.1	MA0107.1	0.072
MA0108.2	MA0108.2	0.27
MA0111.1	MA0111.1	0.439
MA0112.2	MA0112.2	1.00023e-4
MA0113.1	MA0113.1	0.257
MA0114.1	MA0114.1	0.00632
MA0115.1	MA0115.1	0.0136
MA0116.1	MA0116.1	0.00467
MA0117.1	MA0117.1	0.494
MA0119.1	MA0119.1	0.966
MA0122.1	MA0122.1	0.78
MA0124.1	MA0124.1	0.661
MA0125.1	MA0125.1	0.498
MA0131.1	MA0131.1	0.128
MA0135.1	MA0135.1	0.128
MA0136.1	MA0136.1	0.356
MA0137.2	MA0137.2	0.554
MA0138.2	MA0138.2	0.0888
MA0139.1	MA0139.1	0.526
MA0140.1	MA0140.1	0.8
MA0141.1	MA0141.1	8.40797e-4
MA0142.1	MA0142.1	0.0182
MA0143.1	MA0143.1	0.658
MA0144.1	MA0144.1	0.382
MA0145.1	MA0145.1	0.0565
MA0146.1	MA0146.1	0.00364
MA0147.1	MA0147.1	0.66
MA0148.1	MA0148.1	0.287
MA0149.1	MA0149.1	0.834
MA0150.1	MA0150.1	0.251
MA0152.1	MA0152.1	0.0315
MA0153.1	MA0153.1	0.611
MA0154.1	MA0154.1	0.0135
MA0155.1	MA0155.1	0.356
MA0156.1	MA0156.1	0.152
MA0157.1	MA0157.1	0.362
MA0159.1	MA0159.1	0.211
MA0160.1	MA0160.1	0.014
MA0162.1	MA0162.1	0.373
MA0163.1	MA0163.1	9.25566e-4
MA0164.1	MA0164.1	0.0637
MA0258.1	MA0258.1	0.00123
MA0259.1	MA0259.1	0.827

FANTOM5 phase1 novel unique motifsSummary:Association of the 169 novel and unique motifs discovered in FANTOM5 phase1 in this sample. Among the de-novo motifs discovered by DMF, HOMER,ChIPMunk, and ScanAll, only novel motifs are selected after comparison with known motif sets, and their clustering based on MACRO-APE resulted in169 novel and unique motifs. Their association to the promoter expression is evaluated in the same way to the JASPAR motif above Analyst: Michiel de Hoon link to dataset. data

library id: CNhs10745

Novel motif	Logo	P-value
1	1	0.115
10	10	0.313
100	100	0.98
101	101	0.573
102	102	0.119
103	103	0.176
104	104	0.471
105	105	0.124
106	106	0.584
107	107	0.641
108	108	0.495
109	109	0.0768
11	11	0.243
110	110	0.705
111	111	0.352
112	112	0.00396
113	113	0.107
114	114	0.083
115	115	0.239
116	116	0.526
117	117	0.419
118	118	0.925
119	119	0.32
12	12	0.655
120	120	0.715
121	121	0.558
122	122	0.0238
123	123	0.617
124	124	0.409
125	125	0.789
126	126	0.446
127	127	0.188
128	128	0.379
129	129	0.158
13	13	0.213
130	130	0.685
131	131	0.535
132	132	0.993
133	133	0.737
134	134	0.691
135	135	0.652
136	136	0.397
137	137	0.851
138	138	0.501
139	139	0.941
14	14	0.224
140	140	0.012
141	141	0.0308
142	142	0.122
143	143	0.832
144	144	0.908
145	145	0.969
146	146	0.931
147	147	0.71
148	148	0.0647
149	149	0.474
15	15	0.813
150	150	0.789
151	151	0.408
152	152	0.18
153	153	0.555
154	154	0.844
155	155	0.173
156	156	0.536
157	157	0.907
158	158	0.345
159	159	0.604
16	16	0.257
160	160	0.0969
161	161	0.749
162	162	0.581
163	163	0.109
164	164	0.374
165	165	0.955
166	166	0.613
167	167	0.533
168	168	0.0427
169	169	0.00728
17	17	0.166
18	18	0.784
19	19	0.212
2	2	0.455
20	20	0.387
21	21	0.713
22	22	0.0598
23	23	0.949
24	24	0.395
25	25	0.225
26	26	0.418
27	27	0.135
28	28	0.893
29	29	0.286
3	3	0.66
30	30	0.671
31	31	0.255
32	32	0.00641
33	33	0.903
34	34	0.0584
35	35	0.748
36	36	0.454
37	37	0.198
38	38	0.165
39	39	0.799
4	4	0.384
40	40	0.0861
41	41	0.0103
42	42	0.901
43	43	0.156
44	44	0.034
45	45	0.61
46	46	0.394
47	47	0.128
48	48	0.329
49	49	0.0929
5	5	0.863
50	50	0.978
51	51	0.124
52	52	0.204
53	53	0.634
54	54	0.296
55	55	0.162
56	56	0.317
57	57	0.688
58	58	0.108
59	59	0.0101
6	6	0.65
60	60	0.0752
61	61	0.293
62	62	0.0388
63	63	0.589
64	64	0.526
65	65	0.26
66	66	0.945
67	67	0.911
68	68	0.94
69	69	0.526
7	7	0.0466
70	70	0.164
71	71	0.189
72	72	0.372
73	73	0.0822
74	74	0.269
75	75	0.294
76	76	0.397
77	77	0.052
78	78	0.153
79	79	0.576
8	8	0.215
80	80	0.205
81	81	0.397
82	82	0.0595
83	83	0.315
84	84	0.684
85	85	0.194
86	86	0.885
87	87	0.425
88	88	0.873
89	89	0.0342
9	9	0.279
90	90	0.766
91	91	0.52
92	92	0.283
93	93	0.819
94	94	0.585
95	95	0.0534
96	96	0.0968
97	97	0.638
98	98	0.00228
99	99	0.366

de novo motifs identified by HOMER in promoters active in this sampleSummary:The result of HOMER in this sample is shown. Analyst:NA library id: CNhs10745

FANTOM5 (FF) ontology

Direct parent terms

is_a relathionship
EFO:0002091 biological replicate
FF:0000210 human sample
FF:0100919 8305C cell sample

Ancestor terms (non development)Summary:Connected ontology terms with is_a, part_of or located_in relationship Analyst: Hideya Kawaji link to source data data

CL: Cell type
0000000 (cell), 0000000 (cell)
0000003 (native cell)
0000548 (animal cell)
0000066 (epithelial cell)
0000255 (eukaryotic cell)

DOID: Disease
4 (disease)
162 (cancer)
14566 (disease of cellular proliferation)
0050687 (cell type cancer)
7 (disease of anatomical entity)
305 (carcinoma)

UBERON: Anatomy
0000468 (multi-cellular organism)
0002046 (thyroid gland)
0004119 (endoderm-derived structure)
0010314 (structure with developmental contribution from neural crest)
0000062 (organ)
0000061 (anatomical structure)
0000465 (material anatomical entity)
0000467 (anatomical system)
0001062 (anatomical entity)
0000480 (anatomical group)
0002368 (endocrine gland)
0002530 (gland)
0010317 (germ layer / neural crest derived structure)
0000949 (endocrine system)

FF: FANTOM5
0000102 (sample by type)
0000003 (cell line sample)
0000210 (human sample)
0000101 (sample by species)
0000001 (sample)
0100297 (carcinoma cell line sample)
0101120 (epithelial cell line sample)
0103209 (anaplastic thyroid cancer cell line sample)
0101610 (thyroid cancer cell line sample)
0100919 (8305C cell sample)

Ancestor terms (development)Summary:Connected ontology terms with develops_from, derives_from or preceded_by relationship Analyst: Hideya Kawaji link to source data data
UBERON:0002532 (epiblast (generic))
UBERON:0006595 (presumptive endoderm)
UBERON:0007123 (pharyngeal pouch 2)
UBERON:0010316 (germ layer / neural crest)

@@ Line 1: / Line 1: @@
 {{f5samples
-|DRA_sample_Accession=CAGE@DRS007721
+|DRA_sample_Accession=CAGE@SAMD00005691
+|accession_numbers=CAGE;DRX007826;DRR008698;DRZ000123;DRZ001508;DRZ011473;DRZ012858
 |ancestors_in_anatomy_facet=UBERON:0000468,UBERON:0002046,UBERON:0004119,UBERON:0010314,UBERON:0000062,UBERON:0000061,UBERON:0000465,UBERON:0000467,UBERON:0001062,UBERON:0000480,UBERON:0002368,UBERON:0002530,UBERON:0010317,UBERON:0000949
 |ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000548,CL:0000066,CL:0000255
@@ Line 8: / Line 9: @@
 |created_by=
 |creation_date=
-|datafreeze_phase=1
+|data_phase=2
+|datafreeze_phase=2
 |def=
 |expression_enrichment_score=chr2:114036488..114036504,-!p1@PAX8!2.37!233.19!PAX8;;chr15:83953397..83953425,-!p1@BNC1!1.75!63.22!BNC1;;chr14:61116183..61116208,-!p1@SIX1!1.66!163.62!SIX1;;chr10:28034739..28034756,-!p1@MKX!1.56!35.40!MKX;;chr18:19749541..19749557,+!p1@GATA6!1.34!64.11!GATA6;;chr11:31832658..31832681,-!p1@PAX6!1.29!18.37!PAX6;;chr6:10412392..10412409,-!p4@TFAP2A!1.28!20.81!TFAP2A;;chr9:77112244..77112262,+!p1@RORB!1.26!19.15!RORB;;chr20:42543441..42543497,+!p1@TOX2!1.24!72.46!TOX2;;chr2:185463247..185463263,+!p1@ZNF804A!1.16!23.93!ZNF804A;;chr6:34204672..34204692,+!p1@HMGA1!1.11!1339.71!HMGA1;;chr20:42543506..42543549,+!p2@TOX2!1.11!28.72!TOX2;;chr6:34204921..34204939,+!p3@HMGA1!1.08!332.15!HMGA1;;chr2:172967621..172967637,-!p1@DLX2!1.06!28.72!DLX2;;chr12:26277956..26277980,-!p1@BHLHE41!1.05!37.51!BHLHE41;;chr6:45390002..45390023,+!p6@RUNX2!1.03!16.92!RUNX2;;chr6:10412600..10412637,-!p1@TFAP2A!1.00!15.03!TFAP2A;;chr20:6748325..6748352,+!p1@BMP2!1.00!13.25!BMP2;;chr3:157823517..157823562,-!p1@SHOX2!1.00!9.80!SHOX2;;chr12:26277817..26277863,-!p2@BHLHE41!0.99!11.91!BHLHE41;;chr3:141087339..141087387,+!p2@ZBTB38!0.97!87.93!ZBTB38;;chr6:1610293..1610310,+!p1@FOXC1!0.97!14.14!FOXC1;;chr6:28321971..28321995,-!p1@ZNF323!0.97!8.35!ZNF323;;chr9:14314131..14314147,-!p2@NFIB!0.96!46.64!NFIB;;chr10:8096631..8096660,+!p1@GATA3!0.96!9.80!GATA3;;chr6:45390025..45390076,+!p2@RUNX2!0.95!19.59!RUNX2;;chr20:50179368..50179392,-!p2@NFATC2!0.95!10.46!NFATC2;;chr14:61116168..61116180,-!p2@SIX1!0.95!9.02!SIX1;;chr11:34642612..34642646,+!p1@EHF!0.95!8.01!EHF;;chr20:50721803..50721857,-!p2@ZFP64!0.94!12.36!ZFP64;;chr8:55370487..55370503,+!p1@SOX17!0.94!7.79!SOX17;;chr3:141087393..141087426,+!p3@ZBTB38!0.93!30.61!ZBTB38;;chr9:14314566..14314618,-!p1@NFIB!0.91!90.27!NFIB;;chr12:66218598..66218645,+!p2@HMGA2!0.91!34.06!HMGA2;;chr6:45390300..45390335,+!p4@RUNX2!0.91!11.24!RUNX2;;chr6:28321909..28321965,-!p3@ZNF323!0.91!7.12!ZNF323;;chr9:100615499..100615519,+!p1@FOXE1!0.91!7.12!FOXE1;;chr9:77112225..77112238,+!p2@RORB!0.89!6.79!RORB;;chr15:83953373..83953386,-!p2@BNC1!0.89!6.68!BNC1;;chr1:37940170..37940190,+!p1@ZC3H12A!0.88!86.26!ZC3H12A;;chr19:45252008..45252024,+!p2@BCL3!0.88!22.48!BCL3;;chr6:45389835..45389861,+!p7@RUNX2!0.88!10.91!RUNX2;;chr20:39317868..39317884,-!p1@MAFB!0.87!80.14!MAFB;;chr11:65667884..65667895,-!p2@FOSL1!0.86!25.49!FOSL1;;chr17:41622765..41622821,-!p2@ETV4!0.86!9.68!ETV4;;chr2:200323414..200323455,-!p1@SATB2!0.85!13.69!SATB2;;chr2:101436564..101436647,+!p1@NPAS2!0.84!129.01!NPAS2;;chr20:2673383..2673441,+!p1@EBF4!0.84!9.68!EBF4;;chr22:38598086..38598105,+!p1@MAFF!0.83!65.23!MAFF;;chr6:1312325..1312340,+!p1@FOXQ1!0.83!9.68!FOXQ1;;chr18:19749386..19749404,+!p2@GATA6!0.81!8.01!GATA6;;chr11:65667846..65667868,-!p1@FOSL1!0.80!151.49!FOSL1;;chr2:178128149..178128198,-!p2@NFE2L2!0.80!30.61!NFE2L2;;chr9:14082760..14082775,-!p6@NFIB!0.80!9.02!NFIB;;chr9:4299959..4299974,-!p4@GLIS3!0.80!8.68!GLIS3;;chr2:200322654..200322707,-!p2@SATB2!0.80!8.01!SATB2;;chr9:73029219..73029289,-!p2@KLF9!0.79!16.70!KLF9;;chr6:45390269..45390298,+!p5@RUNX2!0.79!8.90!RUNX2;;chr12:66218836..66218888,+!p1@HMGA2!0.78!50.76!HMGA2;;chr2:239756671..239756732,+!p1@TWIST2!0.78!17.59!TWIST2;;chr22:39916558..39916579,+!p1@ATF4!0.77!1554.87!ATF4;;chr19:45971246..45971265,+!p1@FOSB!0.77!100.40!FOSB;;chr9:14083467..14083483,-!p4@NFIB!0.77!13.02!NFIB;;chr9:14313893..14313908,-!p7@NFIB!0.76!7.01!NFIB;;chr10:8096772..8096787,+!p2@GATA3!0.76!5.79!GATA3;;chr3:101568349..101568365,+!p1@NFKBIZ!0.75!269.14!NFKBIZ;;chr12:26277929..26277955,-!p3@BHLHE41!0.75!6.79!BHLHE41;;chr1:201979703..201979721,+!p2@ELF3!0.75!4.67!ELF3;;chr19:42636586..42636607,-!p1@POU2F2!0.74!13.58!POU2F2;;chr2:192015701..192015743,-!p1@STAT4!0.74!6.34!STAT4;;chr20:48807351..48807384,+!p1@CEBPB!0.73!507.12!CEBPB;;chr19:45908292..45908374,-!p1@PPP1R13L!0.73!43.63!PPP1R13L;;chr7:28448965..28448994,+!p2@CREB5!0.73!16.81!CREB5;;chr6:45389791..45389832,+!p3@RUNX2!0.73!12.13!RUNX2;;chr1:59249645..59249656,-!p4@JUN!0.73!11.91!JUN;;chr5:150284532..150284549,-!p1@ZNF300!0.73!9.68!ZNF300;;chr13:72441315..72441454,-!p1@DACH1!0.73!9.46!DACH1;;chr8:80679993..80680011,-!p1@HEY1!0.73!6.57!HEY1;;chr12:66218003..66218018,+!p9@HMGA2!0.73!5.45!HMGA2;;chr17:41622731..41622764,-!p5@ETV4!0.73!4.34!ETV4;;chr9:102584128..102584144,+!p3@NR4A3!0.72!8.57!NR4A3;;chr9:102584159..102584174,+!p2@NR4A3!0.72!8.24!NR4A3;;chr10:28035133..28035148,-!p3@MKX!0.72!4.23!MKX;;chr2:46524537..46524553,+!p1@EPAS1!0.71!466.38!EPAS1;;chr17:46126136..46126152,+!p1@NFE2L1!0.71!241.21!NFE2L1;;chr20:306489..306564,+!p1@SOX12!0.71!50.53!SOX12;;chr2:157189180..157189290,-!p1@NR4A2!0.71!24.38!NR4A2;;chr3:114343768..114343822,-!p1@ZBTB20!0.71!20.26!ZBTB20;;chr14:73360799..73360817,-!p1@DPF3!0.71!15.92!DPF3;;chr7:19157248..19157268,-!p1@TWIST1!0.71!12.47!TWIST1;;chr6:85473156..85473210,-!p2@TBX18!0.71!5.23!TBX18;;chr5:137801160..137801176,+!p1@EGR1!0.70!458.81!EGR1;;chr18:3450161..3450183,+!p1@TGIF1!0.70!155.61!TGIF1;;chr8:57123815.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@@ Line 39: / Line 41: @@
 |fonse_treatment_closure=
 |has_quality=
+|hg19bam=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.cell_line.hCAGE/anaplastic%2520carcinoma%2520cell%2520line%253a8305C.CNhs10745.10428-106D5.hg19.nobarcode.bam
+|hg19ctss=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.cell_line.hCAGE/anaplastic%2520carcinoma%2520cell%2520line%253a8305C.CNhs10745.10428-106D5.hg19.ctss.bed.gz
+|hg19fasta=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.cell_line.hCAGE/anaplastic%2520carcinoma%2520cell%2520line%253a8305C.CNhs10745.10428-106D5.hg19.nobarcode.rdna.fa.gz
+|hg38bam=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.cell_line.hCAGE/anaplastic%2520carcinoma%2520cell%2520line%253a8305C.CNhs10745.10428-106D5.hg38.nobarcode.bam
+|hg38ctss=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.cell_line.hCAGE/anaplastic%2520carcinoma%2520cell%2520line%253a8305C.CNhs10745.10428-106D5.hg38.nobarcode.ctss.bed.gz
 |id=FF:10428-106D5
 |is_a=EFO:0002091;;FF:0000210;;FF:0100919
 |is_obsolete=
-|library_ids=CNhs10745
+|library_id=CNhs10745
+|library_id_phase_based=2:CNhs10745
+|microRNAs=
+|microRNAs_nn=
+|microRNAs_nonnovel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer/#/human#cage;sample;10428
+|microRNAs_novel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer_novel/#/human#cage;sample;10428
 |name=anaplastic carcinoma cell line:8305C
 |namespace=FANTOM5
@@ Line 48: / Line 60: @@
 |profile_cagescan=,,,
 |profile_hcage=CNhs10745,LSID692,release008,COMPLETED
-|profile_rnaseq=,,,
+|profile_rnaseq=
 |profile_srnaseq=,,,
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@@ Line 87: / Line 100: @@
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-}} {{DRAAccessionNumbers
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-|DRA_sample_Accession=CAGE@DRS007721
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 }}

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FF:10428-106D5: Difference between revisions

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Latest revision as of 14:01, 3 June 2020

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	Mozilla Cavendish skin modified by DaSch for the Web Community Wiki GitHub project page – Report a bug – Skin version: 2.6.0