FF:12179-129A1: Difference between revisions

Latest revision as of 18:33, 4 June 2020

Name:	Whole blood (ribopure), donor090309, donation1
Species:	Human (Homo sapiens)
Library ID:	CNhs11675,RDhi10000
Sample type:	primary cells
Genomic View:	UCSC
RefEX:	Specific genes
FANTOM CAT:	1, 2, 3, 4
CAGEd-oPOSSUM:	link
ZENBU report :	link

Additional information

Sample information

strain	NA
tissue	blood
dev stage	NA
sex	NA
age	NA
cell type	CELL MIXTURE - tissue sample
cell line	NA
company	NA
collaboration	Matched_genome_OSC(contact:Al Forrest)
External link for information	[{{{sample_info_link}}} {{{sample_info_link}}}]

RNA information

lot number	NA
catalog number	NA
sample type	total RNA
extraction protocol (Details)	NA

CAGE Accession numbers

Method		Sample accession id
RNA-Seq		SAMD00013685

Library accession numbers

Library id		Method		Exp. accession id		Run accession id
CNhs11675		CAGE		DRX008529		DRR009401
RDhi10000		RNA-Seq		DRX012353		DRR013801

Accession ID Hg19

Library id		BAM		CTSS
CNhs11675		DRZ000826		DRZ002211
RDhi10000		DRZ003002

Accession ID Hg38

Library id		BAM		CTSS
CNhs11675		DRZ012176		DRZ013561
RDhi10000

Download raw sequence, BAM & CTSS

Hg19

Fasta	BAM	CTSS
download	download	donwload

Hg38

BAM	CTSS
download	donwload

Relative expression to median (log10)

Transcription factors with enriched expression in this sampleRanked list of transcription factor promoter expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.

Co-expression clusters with enriched expression in this sampleRanked list of co-expression cluster expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed. Analyst:NA link to dataset. data

Coexpression cluster	score
C0-CD14-Eosinophils-Neutrophils-Basophils-CD34-immature-Peripheral	0
C1-testis-epididymis-embryonic-medulla-pituitary-trachea-caudate	0
C10-occipital-temporal-parietal-brain-duodenum-Neurons-Neural	0
C100-rhabdomyosarcoma-gastric-pineal-Wilms-cervical-mesodermal-endometrial	0
C101-small-cerebellum-maxillary-colon-parietal-epididymis-merkel	0
C102-neuroblastoma-testicular-pituitary-carcinosarcoma-rectum-acantholytic-iPS	0
C103-CD4-CD8-Natural-Peripheral-Whole-Neutrophils-Basophils	0
C104-Mast-Basophils-immature-CD14-CD34-eye-Natural	0
C105-heart-skeletal-occipital-hippocampus-acute-Sebocyte-penis	-0.0338
C106-Hep2-epitheloid-placenta-cervical-rectal-anaplastic-glassy	0
C107-Neutrophils-CD14-Eosinophils-Monocytederived-Whole-Peripheral-blood	0.11
C108-breast-hepatoblastoma-MCF7-parotid-salivary-submaxillary-prostate	0
C109-Reticulocytes-non-acute-Hodgkin-Burkitt-retinoblastoma-lymphoma	-0.315
C11-cerebellum-medulla-pons-parietal-occipital-middle-medial	0
C110-leukemia-chronic-Eosinophils-acute-Whole-CD34-Lymphatic	0
C111-medulla-lung-trachea-testis-caudate-epididymis-throat	0
C112-gastric-pancreas-temporal-duodenum-small-extraskeletal-adrenal	0
C113-thyroid-throat-lung-lymph-small-colon-trachea	0
C114-teratocarcinoma-medulloblastoma-carcinosarcoma-iPS-anaplastic-acute-neuroblastoma	0
C115-pituitary-Neural-caudate-putamen-amygdala-medulla-hippocampus	0
C116-myeloma-xeroderma-tonsil-CD19-spleen-lymph-trachea	0
C117-serous-clear-kidney-neuroectodermal-mesothelioma-endometrial-Intestinal	0
C118-cerebellum-parietal-occipital-medial-middle-frontal-insula	0
C119-CD4-CD8-Natural-Neutrophils-CD14-Peripheral-CD19	0
C12-Mast-Basophils-immature-chorionic-mature-CD14-Eosinophils	0
C120-immature-salivary-tongue-skin-cervical-CD14-CD34	0
C121-NK-Natural-CD8-CD4-anaplastic-chronic-B	0
C122-chronic-Reticulocytes-skeletal-leukemia-acute-colon-Tracheal	0
C123-CD19-Natural-CD8-CD4-CD14-Peripheral-Basophils	0
C124-small-temporal-duodenum-colon-gall-signet-Hepatocyte	0
C125-mucinous-alveolar-mesothelioma-Smooth-lung-CD14-Nucleus	0
C126-gastrointestinal-argyrophil-smallcell-merkel-bile-insula-brain	0
C127-maxillary-small-hepatoblastoma-hepatocellular-alveolar-colon-argyrophil	0
C128-testicular-choriocarcinoma-H9-teratocarcinoma-pancreatic-iPS-HES3GFP	0
C129-liver-Hepatocyte-colon-duodenum-temporal-testicular-small	0
C13-Neutrophils-Eosinophils-CD14-Monocytederived-Whole-Peripheral-CD4	0.106
C130-iPS-HES3GFP-H9-teratocarcinoma-testicular-colon-Alveolar	0
C131-lung-trachea-Alveolar-thyroid-umbilical-throat-skin	0
C132-acute-small-Dendritic-Macrophage-CD14-Neutrophils-Monocytederived	0
C133-signet-gall-small-kidney-colon-ductal-adenocarcinoma	0
C134-skeletal-diaphragm-tongue-throat-Skeletal-skin-penis	0
C135-neuroblastoma-retinoblastoma-carcinoid-choriocarcinoma-testicular-acute-rectum	0
C136-Wilms-extraskeletal-anaplastic-rhabdomyosarcoma-cholangiocellular-nonsmall-neuroectodermal	0
C137-large-ductal-melanoma-cervical-Endothelial-Smooth-chronic	0
C138-diffuse-Burkitt-lymphangiectasia-lymphoma-acute-CD19-pineal	0
C139-astrocytoma-skin-salivary-gall-serous-Mallassezderived-renal	0
C14-Whole-blood-Reticulocytes-liver-Neutrophils-Eosinophils-spleen	1.21
C140-Renal-Endothelial-Hepatic-Lymphatic-heart-lung-spleen	0
C141-Hodgkin-acute-thymus-chronic-vein-CD4-B	0
C142-Preadipocyte-Fibroblast-hepatic-Ewing-Adipocyte-Olfactory-Hair	0
C143-Monocytederived-CD14-Macrophage-Dendritic-Basophils-CD14CD16-Osteoblast	0.178
C144-CD4-tonsil-NK-appendix-CD8-splenic-mycosis	0
C145-neuroblastoma-peripheral-neuroectodermal-neuroepithelioma-carcinoid-adult-extraskeletal	0
C146-lymphangiectasia-lymphoma-gall-lymph-tonsil-gastric-transitionalcell	0
C147-Neutrophils-Eosinophils-CD4-CD14-CD8-Natural-Peripheral	0
C148-kidney-small-epididymis-pancreas-serous-duodenum-temporal	0
C149-occipital-medial-brain-amygdala-parietal-cerebral-cerebellum	0
C15-anaplastic-small-skeletal-neuroblastoma-parietal-temporal-tongue	0
C150-merkel-carcinoid-nonsmall-gastrointestinal-argyrophil-pineal-small	0
C151-CD14-Natural-Basophils-CD8-Eosinophils-CD4-Mast	0
C152-peripheral-neuroectodermal-neuroepithelioma-neuroblastoma-testicular-carcinoid-lung	0
C153-rhabdomyosarcoma-liposarcoma-pancreatic-somatostatinoma-Reticulocytes-lymphoma-testicular	0
C154-adenocarcinoma-Mesenchymal-Cardiac-small-sacrococcigeal-Smooth-Prostate	0
C155-pituitary-placenta-nonsmall-cervical-smallcell-choriocarcinoma-epitheloid	0
C156-plasma-splenic-hereditary-B-large-xeroderma-b	0
C157-testicular-H9-testis-iPS-teratocarcinoma-colon-trachea	0
C158-adrenal-gastric-temporal-parietal-duodenum-caudate-putamen	0
C159-choriocarcinoma-pancreatic-placenta-chorionic-testicular-bronchioalveolar-seminal	0
C16-medial-amygdala-occipital-parietal-olfactory-putamen-brain	0
C160-medulla-Hepatocyte-retina-corpus-liver-pineal-cerebral	0
C161-mesothelioma-Mesothelial-acute-mesenchymal-extraskeletal-renal-placenta	0
C162-spinal-locus-medulla-substantia-thalamus-globus-diencephalon	0
C163-Skeletal-skeletal-Pericytes-Hepatic-rhabdomyosarcoma-throat-mesenchymal	0
C164-signet-corpus-optic-mucinous-substantia-salivary-choriocarcinoma	0
C165-epithelioid-Adipocyte-mesothelioma-myxofibrosarcoma-lung-gastric-Mesothelial	0
C166-Macrophage-Monocytederived-Dendritic-adipose-lymph-CD14-lung	0
C167-Basophils-Mast-Eosinophils-Neutrophils-Peripheral-Whole-CD4	0
C168-Mast-CD14-immature-Basophils-Eosinophils-CD34-Peripheral	0
C169-hereditary-adult-gall-lymphangiectasia-chronic-b-choriocarcinoma	0
C17-Mast-CD14-Monocytederived-Lymphatic-Smooth-mesenchymal-Macrophage	0
C170-epitheloid-cervical-Hep2-keratoacanthoma-adult-neuroblastoma-signet	0
C171-merkel-neuroblastoma-pineal-retinoblastoma-carcinoid-small-eye	0
C172-chorionic-skeletal-tongue-amniotic-liver-gastrointestinal-Pericytes	0
C173-Adipocyte-mature-skin-left-Hepatocyte-Osteoblast-adipose	0
C174-CD14-Neutrophils-Smooth-mesothelioma-embryonic-Monocytederived-Eosinophils	0
C175-Eosinophils-Neutrophils-CD4-Basophils-CD19-CD8-Natural	0.504
C176-Eosinophils-Neutrophils-Mast-CD14-CD4-Basophils-CD19	0.369
C177-melanoma-Melanocyte-mesenchymal-retina-Mallassezderived-Gingival-squamous	0
C178-spleen-liver-Hepatocyte-b-lymph-vein-thymus	0
C179-CD19-Peripheral-lymphoma-blood-lymph-spleen-tonsil	0
C18-CD4-CD8-thymus-Whole-Peripheral-Natural-blood	0.481
C180-skeletal-heart-Hepatocyte-acute-occipital-hippocampus-middle	-0.442
C181-liposarcoma-somatostatinoma-neuroblastoma-mesothelioma-nonsmall-small-Alveolar	0
C182-renal-mature-mesothelioma-lung-Mammary-Adipocyte-acute	0
C183-acute-non-CD34-diffuse-CD133-myeloma-Burkitt	0
C184-somatostatinoma-smallcell-nonsmall-small-gastrointestinal-pineal-thyroid	0
C185-small-adrenal-gastric-Mesenchymal-acute-HES3GFP-testis	0
C186-squamous-papillotubular-large-Tracheal-oral-Small-epidermoid	0
C187-migratory-immature-Dendritic-CD19-CD14-Monocytederived-Macrophage	0.304
C188-left-heart-tongue-skeletal-Skeletal-diaphragm-throat	0
C189-b-splenic-tonsil-CD19-lymph-appendix-spleen	0
C19-embryonic-testis-cord-chronic-CD14-NK-mesothelioma	0
C190-colon-small-rectum-duodenum-appendix-temporal-oral	0
C191-leiomyoblastoma-Mast-parietal-acute-bone-neuroepithelioma-embryonic	0
C192-Neutrophils-CD14-Peripheral-Eosinophils-CD8-Natural-CD4	0
C193-Mesenchymal-Adipocyte-mature-Cardiac-heart-CD14CD16-CD14	0
C194-MCF7-breast-prostate-Intestinal-diffuse-Wilms-Alveolar	0
C195-Small-Gingival-Bronchial-Smooth-mesenchymal-Urothelial-Tracheal	0
C196-testicular-iPS-H9-teratocarcinoma-HES3GFP-choriocarcinoma-endometrial	0
C197-tongue-esophagus-tonsil-salivary-cervix-nasal-Gingival	0
C198-Mesenchymal-Hair-Hepatic-Fibroblast-Smooth-tenocyte-Pericytes	0
C199-glioblastoma-B-osteosarcoma-Fibroblast-heart-rhabdomyosarcoma-myxofibrosarcoma	0
C2-Eosinophils-Neutrophils-CD14-Whole-Basophils-Peripheral-Mast	0.2
C20-heart-left-skeletal-diaphragm-tongue-umbilical-throat	0
C200-seminal-Cardiac-Smooth-Hair-submaxillary-Neutrophils-mixed	0.215
C201-colon-small-adenocarcinoma-duodenum-temporal-signet-gall	0
C202-salivary-skin-penis-tongue-uterus-cervical-immature	0
C203-acute-NK-chronic-CD133-lymphoma-immature-Dendritic	0
C204-Smooth-nasal-CD4-CD19-CD8-CD14-CD34	0
C205-mycosis-cord-hairy-xeroderma-CD4-B-b	0
C206-melanoma-somatostatinoma-nonsmall-small-neuroblastoma-smallcell-pituitary	0
C207-Corneal-Keratinocyte-Esophageal-Mammary-Bronchial-Urothelial-Sebocyte	0
C208-skin-amniotic-papillotubular-salivary-umbilical-Alveolar-serous	0
C209-acute-myelodysplastic-CD34-granulocyte-CD133-liver-spleen	0
C21-cord-mycosis-hairy-xeroderma-adult-CD4-anaplastic	0
C210-Burkitt-lymphoma-appendix-acute-diffuse-CD19-tonsil	0
C211-small-Hepatocyte-liver-colon-temporal-duodenum-kidney	0
C212-chronic-acute-Whole-Reticulocytes-leukemia-blood-CD34	0
C213-CD14-Natural-CD8-CD4-Basophils-Eosinophils-Peripheral	0
C214-Neurons-Neural-duodenum-temporal-occipital-parietal-brain	0
C215-chronic-acute-peripheral-Hepatocyte-osteosarcoma-NK-immature	0
C216-osteosarcoma-Smooth-Mesenchymal-large-neuroectodermal-acute-CD34	0
C217-carcinoid-neuroectodermal-mature-mesodermal-colon-acute-occipital	0
C218-tonsil-lymph-CD19-spleen-colon-appendix-salivary	0.633
C219-nasal-Basophils-amniotic-Melanocyte-CD14-Osteoblast-duodenum	0
C22-CD4-CD8-Natural-Basophils-CD14-Peripheral-CD19	0
C220-Adipocyte-mature-left-breast-skin-liver-adipose	0
C221-alveolar-Osteoblast-Myoblast-mesenchymal-liposarcoma-Smooth-hepatocellular	0
C222-Melanocyte-Tracheal-Neutrophils-seminal-Smooth-Hair-Chondrocyte	0.192
C223-Chondrocyte-basal-renal-Fibroblast-Smooth-spindle-Synoviocyte	0
C224-clear-serous-pleomorphic-choriocarcinoma-mesothelioma-amniotic-renal	0
C225-ductal-alveolar-giant-prostate-salivary-squamous-Tracheal	0
C226-Corneal-Keratinocyte-Esophageal-Urothelial-Mammary-Bronchial-Tracheal	0
C227-chorionic-amniotic-Mesenchymal-Placental-gastric-diaphragm-tongue	0
C228-colon-Intestinal-Prostate-hepatoblastoma-hepatocellular-testis-adult	0
C229-Mesenchymal-CD4-Melanocyte-acute-skeletal-left-heart	0
C23-CD4-CD8-Natural-Peripheral-Basophils-CD19-CD14	0
C230-aorta-normal-heart-penis-osteosarcoma-basal-lung	0
C231-Mesothelial-mesenchymal-mesothelioma-Fibroblast-Preadipocyte-leiomyoma-mycosis	0
C232-teratocarcinoma-HES3GFP-H9-iPS-testicular-neuroblastoma-cerebellum	0
C233-uterus-cervix-ovary-epididymis-colon-rectum-MCF7	0
C234-oral-epidermoid-malignant-cervical-ductal-lung-keratoacanthoma	0
C235-Intestinal-Prostate-liver-colon-small-kidney-pancreas	0
C236-CD14-Neutrophils-Monocytederived-renal-Eosinophils-testis-mesothelioma	0
C237-acute-breast-testicular-hepatoblastoma-chronic-argyrophil-Bronchial	0
C238-stomach-gall-breast-duodenum-temporal-MCF7-smallcell	0
C239-CD4-lymphangiectasia-CD8-NK-mycosis-Renal-hairy	0.178
C24-pineal-eye-retina-retinoblastoma-medulloblastoma-small-cerebral	0
C240-Adipocyte-Preadipocyte-Osteoblast-Chondrocyte-tenocyte-Synoviocyte-mesenchymal	0
C241-Reticulocytes-chronic-Tracheal-Hodgkin-Endothelial-Hair-thymus	-0.281
C242-acute-Chondrocyte-myelodysplastic-granulocyte-biphenotypic-Fibroblast-stomach	0
C243-Chondrocyte-trachea-Synoviocyte-mesodermal-renal-Fibroblast-Ewing	0
C244-CD14-Monocytederived-Hepatocyte-heart-Neutrophils-acute-Macrophage	0
C245-prostate-penis-salivary-esophagus-kidney-Neutrophils-Pancreatic	0
C246-Neutrophils-Eosinophils-Whole-CD14-CD14CD16-Basophils-migratory	1.146
C247-pons-locus-medulla-spinal-paracentral-medial-occipital	0
C248-iPS-Aortic-Hep2-amygdala-acute-medial-Myoblast	0
C249-nonsmall-small-smallcell-occipital-somatostatinoma-maxillary-medial	0
C25-small-colon-temporal-duodenum-liver-Hepatocyte-gall	0
C250-Mast-Neutrophils-CD14-Eosinophils-CD8-Peripheral-CD4	0.158
C251-gall-tonsil-trachea-CD14-salivary-throat-tongue	0
C252-hepatic-Olfactory-sacrococcigeal-leiomyoma-normal-Synoviocyte-glioblastoma	0
C253-spleen-rhabdomyosarcoma-Hepatocyte-small-uterus-liver-rectum	0
C254-prostate-rhabdomyosarcoma-seminal-Fibroblast-transitionalcell-Smooth-Iris	0
C255-Wilms-leiomyoblastoma-kidney-adrenal-MCF7-epithelioid-Mast	0
C256-occipital-caudate-amygdala-medial-thalamus-hippocampus-medulla	0
C257-pineal-insula-frontal-occipital-temporal-medial-paracentral	0
C258-hepatoblastoma-hepatocellular-signet-colon-Intestinal-Prostate-gastric	0
C259-Preadipocyte-Adipocyte-Fibroblast-Chondrocyte-tenocyte-normal-Ewing	0
C26-Eosinophils-Neutrophils-CD14-CD14CD16-Basophils-Monocytederived-Whole	0.549
C260-acute-chronic-Natural-NK-Basophils-biphenotypic-blood	0
C261-locus-medial-parietal-pons-diencephalon-olfactory-spinal	0
C262-breast-MCF7-skeletal-Reticulocytes-mucinous-hepatoblastoma-Wilms	0
C263-cervical-keratoacanthoma-tongue-skin-esophagus-throat-tonsil	0
C264-giant-keratoacanthoma-colon-fibrosarcoma-HES3GFP-Hep2-acute	0
C265-CD4-Eosinophils-CD14-Natural-CD19-Basophils-CD8	0.177
C266-acute-chronic-leukemia-small-choriocarcinoma-hepatoma-Mast	0
C267-pancreatic-placenta-choriocarcinoma-testicular-teratocarcinoma-chorionic-clear	0
C268-Mallassezderived-Urothelial-Gingival-Small-Bronchial-Tracheal-Prostate	0
C269-Basophils-Mast-Eosinophils-mature-CD14-chorionic-CD4	0
C27-pancreas-temporal-duodenum-salivary-ductus-umbilical-lung	0
C270-CD4-Fibroblast-acute-iPS-Aortic-CD34-Smooth	-0.00131
C271-pineal-spinal-locus-globus-medulla-thalamus-cerebellum	0
C272-CD19-CD4-CD8-Whole-Peripheral-lymph-tonsil	0.481
C273-Neutrophils-CD14-Eosinophils-Monocytederived-CD4-Natural-Mast	0
C274-CD14-Mast-immature-Basophils-mature-vagina-Hepatocyte	0
C275-pons-medulla-cerebellum-locus-thalamus-diencephalon-spinal	0
C276-mesothelioma-kidney-renal-small-clear-cerebellum-Renal	0
C277-mesothelioma-epithelioid-thyroid-extraskeletal-alveolar-glioblastoma-adenocarcinoma	0
C278-amygdala-hippocampus-insula-medial-putamen-temporal-olfactory	0
C279-parietal-cerebellum-occipital-temporal-middle-duodenum-medial	0
C28-thymus-acute-vein-Hodgkin-chronic-throat-Dendritic	0
C280-Mast-Natural-CD19-CD8-Eosinophils-CD34-CD4	0.13
C281-Hodgkin-Reticulocytes-chronic-NK-acute-retinoblastoma-small	-0.646
C282-acute-B-tonsil-CD19-submaxillary-lymph-throat	0
C283-tenocyte-Chondrocyte-mesenchymal-Macrophage-pleomorphic-Synoviocyte-cholangiocellular	0
C284-parietal-occipital-medial-temporal-olfactory-locus-hippocampus	0
C285-cervical-Hep2-small-colon-temporal-duodenum-bronchogenic	0
C286-cerebellum-occipital-optic-parietal-globus-caudate-medial	0
C287-Hepatocyte-Chondrocyte-Adipocyte-Synoviocyte-liver-tenocyte-mesenchymal	0
C288-Chondrocyte-Renal-Pericytes-Fibroblast-aorta-Smooth-Meningeal	0
C289-chorionic-skeletal-heart-Mast-amniotic-granulosa-left	0
C29-mature-adipose-Adipocyte-breast-Lymphatic-vein-heart	0
C290-Eosinophils-CD14-Basophils-Mast-CD4-CD8-immature	0.147
C291-spinal-substantia-retina-medulla-tongue-skeletal-trachea	0
C292-Mesenchymal-skin-umbilical-Adipocyte-mesenchymal-Chondrocyte-skeletal	0
C293-CD14-CD14CD16-Basophils-Peripheral-immature-Eosinophils-CD34	0
C294-CD14-Macrophage-Monocytederived-CD14CD16-Neutrophils-Basophils-Peripheral	0.658
C295-Fibroblast-Smooth-Myoblast-Chondrocyte-hepatic-Synoviocyte-Preadipocyte	0
C296-gall-small-mesothelioma-acute-bronchioalveolar-epidermoid-mixed	0
C297-Eosinophils-CD4-Basophils-Natural-Neutrophils-CD8-Peripheral	0.0411
C298-small-optic-substantia-thalamus-diencephalon-globus-occipital	0
C299-CD14CD16-Eosinophils-Neutrophils-CD14-Whole-Basophils-blood	0.746
C3-occipital-temporal-insula-medial-postcentral-frontal-amygdala	0
C30-thyroid-throat-mesothelioma-mucinous-trachea-chorionic-mesenchymal	0
C300-CD4-CD8-NK-Natural-blood-mycosis-Basophils	0.178
C301-Smooth-mesenchymal-Endothelial-Hepatic-basal-hepatic-chorionic	0
C302-acute-peripheral-Neutrophils-NK-myelodysplastic-CD34-carcinoid	0
C303-CD14-Basophils-Peripheral-Eosinophils-CD14CD16-Neutrophils-Whole	0
C305-heart-skeletal-smooth-left-bladder-penis-esophagus	0
C31-skeletal-tongue-diaphragm-throat-penis-skin-trachea	0
C32-middle-occipital-parietal-hippocampus-amygdala-medial-olfactory	0
C33-Reticulocytes-liver-Whole-blood-chronic-acute-spleen	0.178
C34-placenta-chorionic-choriocarcinoma-mesothelioma-Wilms-Smooth-bile	0
C35-caudate-putamen-diencephalon-nucleus-globus-thalamus-insula	0
C36-B-b-splenic-plasma-xeroderma-adrenal-Burkitt	0
C37-salivary-submaxillary-parotid-seminal-tongue-ductus-trachea	0
C38-extraskeletal-rhabdomyosarcoma-adrenal-rectal-mesothelioma-lung-Wilms	0
C39-epididymis-ductus-seminal-testis-acute-thyroid-CD133	0
C4-optic-corpus-substantia-medulla-spinal-thalamus-globus	0
C40-eye-retina-Lens-pineal-tongue-retinoblastoma-small	0
C41-retina-eye-medulla-Retinal-medulloblastoma-kidney-pineal	0
C42-small-lung-maxillary-pharyngeal-Mesenchymal-Wilms-colon	0
C43-ductus-seminal-duodenum-temporal-gall-prostate-bladder	0
C44-Dendritic-CD19-CD133-granulocyte-acute-thymus-immature	0
C45-testicular-choriocarcinoma-H9-teratocarcinoma-Wilms-pancreatic-iPS	0
C46-acute-Hodgkin-thymus-CD8-chronic-CD4-merkel	0
C47-CD19-Burkitt-acute-xeroderma-tonsil-lymphoma-appendix	0.178
C48-smooth-bladder-esophagus-colon-penis-aorta-uterus	0
C49-H9-iPS-testicular-HES3GFP-teratocarcinoma-hepatoblastoma-choriocarcinoma	0
C5-Hepatocyte-liver-hepatocellular-Intestinal-kidney-small-pancreas	0
C50-chorionic-placenta-amniotic-migratory-smallcell-chronic-choriocarcinoma	0
C51-kidney-mesothelioma-renal-signet-gall-lung-pancreas	0
C52-adult-NK-chronic-cord-testis-embryonic-myeloma	0
C53-medulloblastoma-pineal-retinoblastoma-small-retina-eye-pituitary	0
C54-Dendritic-Macrophage-Monocytederived-CD14-leiomyoma-adipose-immature	0
C55-hepatocellular-Intestinal-liver-Prostate-fibrosarcoma-Hepatocyte-hepatoblastoma	0
C56-heart-left-umbilical-skeletal-penis-diaphragm-tongue	0
C57-Neutrophils-Eosinophils-Whole-CD4-CD8-CD19-Natural	0.882
C58-Melanocyte-melanoma-retina-Retinal-eye-migratory-H9	0
C59-Smooth-Fibroblast-Mesenchymal-tenocyte-Ewing-skin-hepatic	0
C6-CD14-Eosinophils-Basophils-Peripheral-CD34-Natural-immature	0
C60-esophagus-tonsil-throat-tongue-uterus-cervix-cervical	0
C61-migratory-Dendritic-immature-Macrophage-xeroderma-cord-b	0
C62-Burkitt-tonsil-CD19-submaxillary-spleen-salivary-lymph	0
C63-neuroectodermal-neuroblastoma-carcinoid-peripheral-chronic-neuroepithelioma-acute	0
C64-Mast-chronic-acute-immature-chorionic-Basophils-Dendritic	0
C65-CD14-Eosinophils-Monocytederived-Basophils-immature-Macrophage-Neutrophils	0
C66-cerebellum-middle-occipital-parietal-medial-amygdala-hippocampus	0
C67-CD14-Monocytederived-Macrophage-dura-Dendritic-spleen-lung	0
C68-amniotic-chorionic-Placental-salivary-placenta-tongue-mesothelioma	0
C69-anaplastic-CD14-cord-hairy-mycosis-adult-NK	0
C7-CD14-Eosinophils-Neutrophils-Smooth-Basophils-Macrophage-Mast	0
C70-parotid-submaxillary-salivary-throat-trachea-aorta-tongue	0
C71-Monocytederived-Macrophage-CD14-Dendritic-Osteoblast-leiomyoma-Prostate	0
C72-skeletal-tongue-throat-heart-diaphragm-penis-left	0
C73-pineal-eye-retina-caudate-cerebellum-left-parietal	0
C74-splenic-B-b-plasma-xeroderma-lymphoma-hairy	0
C75-Eosinophils-Natural-CD8-Basophils-CD14-CD4-Peripheral	0
C76-argyrophil-gastrointestinal-temporal-duodenum-neuroblastoma-merkel-smallcell	0
C77-Saos2-osteosarcoma-Neutrophils-Natural-Chondrocyte-Basophils-CD8	0
C78-lymphoma-plasma-tonsil-appendix-lymph-seminal-trachea	0
C79-chorionic-Chondrocyte-Cardiac-Smooth-Fibroblast-Preadipocyte-Mesenchymal	0
C8-Natural-CD8-Basophils-CD4-CD14-Peripheral-CD34	0
C80-immature-migratory-CD14-Dendritic-splenic-cord-Mast	0
C81-trachea-salivary-throat-aorta-eye-submaxillary-parotid	0
C82-Basophils-CD14-Eosinophils-Natural-Peripheral-immature-CD34	0
C83-choriocarcinoma-pancreatic-placenta-chorionic-HES3GFP-testicular-amniotic	0
C84-choriocarcinoma-pancreatic-Wilms-Mallassezderived-thymus-salivary-colon	0
C85-neuroblastoma-carcinoid-retinoblastoma-small-pineal-rhabdomyosarcoma-medulloblastoma	0
C86-colon-carcinoid-small-neuroectodermal-giant-large-neuroepithelioma	0
C87-retinoblastoma-left-nonsmall-heart-small-diaphragm-bronchogenic	0
C88-Melanocyte-melanoma-Macrophage-Mesenchymal-migratory-Dendritic-Monocytederived	0
C89-small-retinoblastoma-medulloblastoma-iPS-acantholytic-eye-bronchogenic	0
C9-skeletal-diaphragm-tongue-throat-penis-heart-left	0
C90-neuroectodermal-peripheral-neuroepithelioma-neuroblastoma-carcinoid-parietal-putamen	0
C91-Fibroblast-Smooth-mesenchymal-Mesothelial-Small-Preadipocyte-Hair	0
C92-CD14CD16-CD14-Eosinophils-Basophils-Neutrophils-Macrophage-Whole	0.178
C93-chronic-acute-leukemia-acantholytic-medulloblastoma-testis-papillotubular	0
C94-smallcell-adrenal-lung-nonsmall-small-somatostatinoma-teratocarcinoma	0
C95-lung-aorta-trachea-penis-Alveolar-throat-endometrioid	0
C96-non-acute-tonsil-spleen-Burkitt-lymphoma-appendix	0
C97-small-smallcell-gastrointestinal-argyrophil-putamen-duodenum-brain	0
C98-CD8-Natural-Basophils-blood-CD4-Peripheral-Whole	0.481
C99-hairy-mycosis-submaxillary-salivary-cord-kidney-parotid	0

Repeat families with enriched expression in this sampleSummary:Ranked list of repeat family expression in this sample relative tothe median expression in the FANTOM5 collection is shown. Value is log10transformed. Analyst:NA link to dataset. data

TFBS(DNA)motifs over-represented in proximal region of promoters active in this sample

JASPAR motifsSummary:Association of JASPAR motif to the promoter expression in thissample. Pearson's correlation between the number of TFBSs estimated byusing the position-weight matrix for each promoter and its expression isexpressed as Z-score by taking the ones based on random position-weightmatrix, and the tail probability of the normal distribution correspondingto the Z-score is taken as the resulting P-value. Lower P-value indicatesmore (non-random) association of the motif to promoter expression Analyst: Michiel de Hoon link to dataset. data

library id: CNhs11675

Jaspar motif	Logo	P-value
MA0002.2	MA0002.2	2.31591e-11
MA0003.1	MA0003.1	0.04
MA0004.1	MA0004.1	0.522
MA0006.1	MA0006.1	0.502
MA0007.1	MA0007.1	0.944
MA0009.1	MA0009.1	0.0468
MA0014.1	MA0014.1	0.971
MA0017.1	MA0017.1	0.0688
MA0018.2	MA0018.2	0.136
MA0019.1	MA0019.1	0.958
MA0024.1	MA0024.1	0.0188
MA0025.1	MA0025.1	0.944
MA0027.1	MA0027.1	0.515
MA0028.1	MA0028.1	0.542
MA0029.1	MA0029.1	0.443
MA0030.1	MA0030.1	0.0131
MA0031.1	MA0031.1	2.29207e-4
MA0035.2	MA0035.2	2.61498e-5
MA0038.1	MA0038.1	0.0383
MA0039.2	MA0039.2	0.0992
MA0040.1	MA0040.1	0.0542
MA0041.1	MA0041.1	0.0516
MA0042.1	MA0042.1	0.0266
MA0043.1	MA0043.1	0.668
MA0046.1	MA0046.1	0.371
MA0047.2	MA0047.2	0.183
MA0048.1	MA0048.1	0.0733
MA0050.1	MA0050.1	1.11706e-6
MA0051.1	MA0051.1	0.0106
MA0052.1	MA0052.1	0.105
MA0055.1	MA0055.1	0.038
MA0057.1	MA0057.1	0.96
MA0058.1	MA0058.1	0.563
MA0059.1	MA0059.1	0.563
MA0060.1	MA0060.1	9.95719e-4
MA0061.1	MA0061.1	0.0298
MA0062.2	MA0062.2	3.82314e-5
MA0065.2	MA0065.2	0.149
MA0066.1	MA0066.1	0.327
MA0067.1	MA0067.1	0.929
MA0068.1	MA0068.1	0.721
MA0069.1	MA0069.1	0.885
MA0070.1	MA0070.1	0.017
MA0071.1	MA0071.1	0.73
MA0072.1	MA0072.1	0.539
MA0073.1	MA0073.1	0.324
MA0074.1	MA0074.1	0.652
MA0076.1	MA0076.1	0.144
MA0077.1	MA0077.1	0.134
MA0078.1	MA0078.1	0.972
MA0079.2	MA0079.2	0.622
MA0080.2	MA0080.2	1.67584e-17
MA0081.1	MA0081.1	0.0012
MA0083.1	MA0083.1	0.95
MA0084.1	MA0084.1	0.736
MA0087.1	MA0087.1	0.962
MA0088.1	MA0088.1	0.289
MA0090.1	MA0090.1	0.0138
MA0091.1	MA0091.1	0.221
MA0092.1	MA0092.1	0.866
MA0093.1	MA0093.1	0.425
MA0099.2	MA0099.2	0.891
MA0100.1	MA0100.1	0.819
MA0101.1	MA0101.1	0.521
MA0102.2	MA0102.2	2.25757e-4
MA0103.1	MA0103.1	0.18
MA0104.2	MA0104.2	0.468
MA0105.1	MA0105.1	5.41809e-4
MA0106.1	MA0106.1	0.539
MA0107.1	MA0107.1	0.659
MA0108.2	MA0108.2	3.18031e-4
MA0111.1	MA0111.1	0.314
MA0112.2	MA0112.2	0.00182
MA0113.1	MA0113.1	0.925
MA0114.1	MA0114.1	0.494
MA0115.1	MA0115.1	0.289
MA0116.1	MA0116.1	2.70311e-5
MA0117.1	MA0117.1	0.836
MA0119.1	MA0119.1	0.575
MA0122.1	MA0122.1	0.439
MA0124.1	MA0124.1	0.844
MA0125.1	MA0125.1	0.0379
MA0131.1	MA0131.1	0.52
MA0135.1	MA0135.1	0.175
MA0136.1	MA0136.1	5.308e-24
MA0137.2	MA0137.2	0.059
MA0138.2	MA0138.2	0.475
MA0139.1	MA0139.1	0.175
MA0140.1	MA0140.1	5.62346e-16
MA0141.1	MA0141.1	0.806
MA0142.1	MA0142.1	0.955
MA0143.1	MA0143.1	0.66
MA0144.1	MA0144.1	0.0413
MA0145.1	MA0145.1	0.0846
MA0146.1	MA0146.1	0.00729
MA0147.1	MA0147.1	0.429
MA0148.1	MA0148.1	0.625
MA0149.1	MA0149.1	0.486
MA0150.1	MA0150.1	0.00899
MA0152.1	MA0152.1	0.0593
MA0153.1	MA0153.1	0.108
MA0154.1	MA0154.1	0.0031
MA0155.1	MA0155.1	0.602
MA0156.1	MA0156.1	8.6641e-19
MA0157.1	MA0157.1	0.00228
MA0159.1	MA0159.1	0.134
MA0160.1	MA0160.1	0.629
MA0162.1	MA0162.1	0.515
MA0163.1	MA0163.1	9.18308e-5
MA0164.1	MA0164.1	0.462
MA0258.1	MA0258.1	0.0385
MA0259.1	MA0259.1	0.272

FANTOM5 phase1 novel unique motifsSummary:Association of the 169 novel and unique motifs discovered in FANTOM5 phase1 in this sample. Among the de-novo motifs discovered by DMF, HOMER,ChIPMunk, and ScanAll, only novel motifs are selected after comparison with known motif sets, and their clustering based on MACRO-APE resulted in169 novel and unique motifs. Their association to the promoter expression is evaluated in the same way to the JASPAR motif above Analyst: Michiel de Hoon link to dataset. data

library id: CNhs11675

Novel motif	Logo	P-value
1	1	0.177
10	10	0.102
100	100	0.513
101	101	0.276
102	102	0.551
103	103	0.0927
104	104	0.709
105	105	0.206
106	106	0.0465
107	107	0.728
108	108	0.81
109	109	0.112
11	11	0.0905
110	110	0.365
111	111	0.533
112	112	0.0825
113	113	0.201
114	114	0.0583
115	115	0.31
116	116	0.959
117	117	0.0444
118	118	0.319
119	119	0.474
12	12	0.364
120	120	0.586
121	121	0.703
122	122	0.238
123	123	0.267
124	124	0.0311
125	125	0.14
126	126	0.217
127	127	0.218
128	128	0.0346
129	129	0.593
13	13	0.864
130	130	0.607
131	131	0.854
132	132	0.536
133	133	0.317
134	134	0.871
135	135	0.366
136	136	0.893
137	137	0.00644
138	138	0.0777
139	139	0.0302
14	14	0.165
140	140	0.356
141	141	0.502
142	142	0.983
143	143	0.00192
144	144	0.599
145	145	0.353
146	146	0.731
147	147	0.146
148	148	0.206
149	149	0.449
15	15	0.028
150	150	0.836
151	151	0.271
152	152	0.256
153	153	0.516
154	154	0.89
155	155	0.217
156	156	0.708
157	157	0.234
158	158	0.251
159	159	0.258
16	16	0.444
160	160	0.762
161	161	0.382
162	162	0.664
163	163	0.516
164	164	0.257
165	165	0.147
166	166	0.798
167	167	0.53
168	168	0.0739
169	169	0.0175
17	17	0.405
18	18	0.433
19	19	0.301
2	2	0.205
20	20	0.535
21	21	0.492
22	22	0.148
23	23	0.0625
24	24	0.017
25	25	0.194
26	26	0.238
27	27	0.0805
28	28	0.469
29	29	0.41
3	3	0.0893
30	30	0.835
31	31	0.455
32	32	0.75
33	33	0.611
34	34	0.199
35	35	0.291
36	36	0.52
37	37	0.148
38	38	0.304
39	39	0.939
4	4	0.881
40	40	0.405
41	41	0.0452
42	42	0.29
43	43	0.152
44	44	0.358
45	45	0.346
46	46	0.135
47	47	0.174
48	48	0.249
49	49	0.161
5	5	0.192
50	50	0.941
51	51	0.397
52	52	0.453
53	53	0.168
54	54	0.321
55	55	0.0727
56	56	0.253
57	57	0.91
58	58	0.064
59	59	0.0433
6	6	0.766
60	60	0.0466
61	61	0.267
62	62	0.0129
63	63	0.546
64	64	0.369
65	65	0.154
66	66	0.562
67	67	0.247
68	68	0.54
69	69	0.461
7	7	0.172
70	70	0.0346
71	71	0.111
72	72	0.209
73	73	0.261
74	74	0.562
75	75	0.0999
76	76	0.552
77	77	0.568
78	78	0.367
79	79	0.956
8	8	0.431
80	80	0.0096
81	81	0.332
82	82	0.0313
83	83	0.482
84	84	0.548
85	85	0.162
86	86	0.114
87	87	0.527
88	88	0.543
89	89	0.188
9	9	0.159
90	90	0.0443
91	91	0.514
92	92	0.0644
93	93	0.203
94	94	0.115
95	95	0.477
96	96	0.104
97	97	0.765
98	98	0.0629
99	99	0.494

de novo motifs identified by HOMER in promoters active in this sampleSummary:The result of HOMER in this sample is shown. Analyst:NA library id: CNhs11675

FANTOM5 (FF) ontology

Direct parent terms

is_a relathionship
EFO:0002091 biological replicate
FF:0000002 in vivo cell sample
FF:0000281 human whole blood sample

Ancestor terms (non development)Summary:Connected ontology terms with is_a, part_of or located_in relationship Analyst: Hideya Kawaji link to source data data

CL: Cell type
0000000 (cell), 0000000 (cell)
0000003 (native cell)

UBERON: Anatomy
0000468 (multi-cellular organism)
0007023 (adult organism)
0000178 (blood)
0000479 (tissue)
0004120 (mesoderm-derived structure)
0000061 (anatomical structure)
0000465 (material anatomical entity)
0000179 (haemolymphatic fluid)
0000463 (organism substance)
0000467 (anatomical system)
0001062 (anatomical entity)
0000480 (anatomical group)
0010317 (germ layer / neural crest derived structure)
0002390 (hematopoietic system)
0004535 (cardiovascular system)
0002193 (hemolymphoid system)
0001009 (circulatory system)

FF: FANTOM5
0000102 (sample by type)
0000210 (human sample)
0000002 (in vivo cell sample)
0000101 (sample by species)
0000001 (sample)
0000998 (adult tissue sample)
0010053 (human blood - adult sample)
0000004 (tissue sample)
0000281 (human whole blood sample)

Ancestor terms (development)Summary:Connected ontology terms with develops_from, derives_from or preceded_by relationship Analyst: Hideya Kawaji link to source data data
NA

@@ Line 1: / Line 1: @@
 {{f5samples
-|DRA_sample_Accession=CAGE@DRS008421!RNA-Seq@DRS012100
+|DRA_sample_Accession=RNA-Seq@SAMD00013685
-|accession_numbers=CAGE;DRX008529;DRR009401;DRZ000826;DRZ002211!RNA-Seq;DRX012353;DRR013801;DRZ003002;NA
+|accession_numbers=CAGE;DRX008529;DRR009401;DRZ000826;DRZ002211;DRZ012176;DRZ013561!RNA-Seq;DRX012353;DRR013801;DRZ003002;
 |ancestors_in_anatomy_facet=UBERON:0000468,UBERON:0007023,UBERON:0000178,UBERON:0000479,UBERON:0004120,UBERON:0000061,UBERON:0000465,UBERON:0000179,UBERON:0000463,UBERON:0000467,UBERON:0001062,UBERON:0000480,UBERON:0010317,UBERON:0002390,UBERON:0004535,UBERON:0002193,UBERON:0001009
 |ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003
@@ Line 9: / Line 9: @@
 |created_by=
 |creation_date=
-|datafreeze_phase=1
+|data_phase=2
+|datafreeze_phase=2
 |def=
 |expression_enrichment_score=chr12:54694653..54694672,-!p2@NFE2!2.80!623.65!NFE2;;chr11:47400078..47400106,-!p1@SPI1!2.73!539.42!SPI1;;chr2:68592406..68592424,+!p1@PLEK!2.61!410.53!PLEK;;chrX:131623044..131623089,-!p1@MBNL3!2.51!1254.41!MBNL3;;chrX:131623026..131623039,-!p5@MBNL3!2.40!252.20!MBNL3;;chrX:131622958..131622978,-!p3@MBNL3!2.39!307.01!MBNL3;;chr12:54694758..54694805,-!p1@NFE2!2.37!277.57!NFE2;;chrX:131622988..131623006,-!p8@MBNL3!2.29!194.86!MBNL3;;chr10:51572339..51572376,+!p4@NCOA4!2.23!365.87!NCOA4;;chrX:70315688..70315709,+!p1@FOXO4!2.20!350.14!FOXO4;;chr12:54694807..54694832,-!p3@NFE2!2.19!154.77!NFE2;;chr7:28220506..28220552,-!p3@JAZF1!2.18!149.70!JAZF1;;chr10:51572408..51572454,+!p3@NCOA4!2.13!743.92!NCOA4;;chr19:13213511..13213545,-!p2@LYL1!2.11!138.03!LYL1;;chr7:28220354..28220441,-!p1@JAZF1!2.02!1494.43!JAZF1;;chr3:128212033..128212051,-!p1@GATA2!2.01!102.00!GATA2;;chr19:12998003..12998021,-!p1@KLF1!1.99!96.92!KLF1;;chr10:51585430..51585448,+!p7@NCOA4!1.98!94.39!NCOA4;;chr10:51585449..51585487,+!p6@NCOA4!1.96!90.33!NCOA4;;chr2:70142232..70142251,+!p1@MXD1!1.94!462.28!MXD1;;chr4:109087445..109087463,-!p1@LEF1!1.78!59.37!LEF1;;chr7:50344289..50344323,+!p1@IKZF1!1.77!57.34!IKZF1;;chr3:141748010..141748030,-!p8@TFDP2!1.76!56.83!TFDP2;;chr2:148778973..148779035,+!p3@MBD5!1.74!134.47!MBD5;;chr10:111985713..111985774,+!p2@MXI1!1.72!464.31!MXI1;;chr1:47697965..47697991,-!p7@TAL1!1.71!50.24!TAL1;;chr1:43148855..43148908,+!p4@YBX1!1.70!76.62!YBX1;;chr11:47400062..47400077,-!p2@SPI1!1.70!48.71!SPI1;;chr16:85932760..85932775,+!p1@IRF8!1.62!41.10!IRF8;;chr17:45810594..45810608,+!p1@TBX21!1.62!40.60!TBX21;;chr21:34442439..34442455,+!p1@OLIG1!1.61!40.09!OLIG1;;chr3:27763807..27763822,-!p1@EOMES!1.60!38.57!EOMES;;chr12:54778471..54778528,-!p1@ZNF385A!1.59!38.06!ZNF385A;;chr11:47400032..47400043,-!p5@SPI1!1.57!36.54!SPI1;;chr12:54689552..54689574,-!p6@NFE2!1.57!36.03!NFE2;;chr5:133451294..133451310,+!p2@TCF7!1.57!36.03!TCF7;;chr9:117150254..117150271,-!p1@AKNA!1.56!93.37!AKNA;;chrX:48644984..48645005,+!p1@GATA1!1.56!35.52!GATA1;;chr10:111967345..111967422,+!p1@MXI1!1.55!537.89!MXI1;;chr1:23857325..23857416,-!p2@E2F2!1.54!39.58!E2F2;;chr17:17721569..17721574,-!p9@SREBF1!1.54!34.00!SREBF1;;chr7:50343634..50343717,+!p2@IKZF1!1.54!33.49!IKZF1;;chr2:231090433..231090469,+!p1@SP140!1.54!33.49!SP140;;chr3:187463179..187463201,-!p2@BCL6!1.53!131.43!BCL6;;chr2:68592394..68592405,+!p2@PLEK!1.53!32.98!PLEK;;chr19:13213662..13213686,-!p1@LYL1!1.52!46.69!LYL1;;chr11:47399947..47399961,-!p3@SPI1!1.52!32.48!SPI1;;chr19:13213634..13213645,-!p8@LYL1!1.50!30.45!LYL1;;chr11:47399996..47400014,-!p4@SPI1!1.48!29.43!SPI1;;chr19:16435625..16435682,+!p1@KLF2!1.47!879.91!KLF2;;chr2:192015701..192015743,-!p1@STAT4!1.47!39.07!STAT4;;chr5:176735063..176735088,-!p2@MXD3!1.46!27.91!MXD3;;chr11:111249993..111250006,-!p1@POU2AF1!1.45!27.40!POU2AF1;;chr9:135854091..135854159,+!p1@GFI1B!1.45!27.40!GFI1B;;chr19:13213555..13213568,-!p5@LYL1!1.45!26.89!LYL1;;chr7:28725715..28725727,+!p3@CREB5!1.43!30.45!CREB5;;chr6:391743..391759,+!p1@IRF4!1.40!24.36!IRF4;;chr12:54689532..54689551,-!p4@NFE2!1.39!23.34!NFE2;;chr6:108881012..108881034,+!p3@FOXO3!1.38!80.68!FOXO3;;chr10:51565239..51565263,+!p2@NCOA4!1.37!505.42!NCOA4;;chr11:47400045..47400060,-!p6@SPI1!1.37!22.33!SPI1;;chr4:185395633..185395651,-!p2@IRF2!1.36!34.51!IRF2;;chr1:23857698..23857733,-!p1@E2F2!1.35!39.07!E2F2;;chr7:28725740..28725778,+!p1@CREB5!1.34!181.67!CREB5;;chr2:192015750..192015793,-!p2@STAT4!1.34!27.91!STAT4;;chr3:63953435..63953499,+!p1@ATXN7!1.34!20.81!ATXN7;;chr20:56195474..56195506,-!p1@ZBP1!1.34!20.81!ZBP1;;chr1:25256756..25256774,-!p1@RUNX3!1.31!36.03!RUNX3;;chr3:18486354..18486377,-!p2@SATB1!1.31!24.36!SATB1;;chr6:144385698..144385742,-!p2@PLAGL1!1.31!23.34!PLAGL1;;chr12:54691711..54691725,-!p7@NFE2!1.31!19.28!NFE2;;chr1:23857128..23857141,-!p6@E2F2!1.30!18.78!E2F2;;chr11:128563948..128564003,+!p1@FLI1!1.29!216.68!FLI1;;chr5:133450365..133450444,+!p1@TCF7!1.29!83.73!TCF7;;chr20:50159198..50159299,-!p1@NFATC2!1.29!26.89!NFATC2;;chr2:231090471..231090504,+!p2@SP140!1.28!18.27!SP140;;chr1:43148792..43148849,+!p2@YBX1!1.27!66.48!YBX1;;chr1:47695003..47695042,-!p2@TAL1!1.26!17.25!TAL1;;chr12:54694738..54694749,-!p5@NFE2!1.24!16.24!NFE2;;chr13:41593425..41593480,-!p1@ELF1!1.23!98.95!ELF1;;chr16:88752889..88752921,-!p1@SNAI3!1.23!18.78!SNAI3;;chr7:149470641..149470694,-!p1@ZNF467!1.22!69.52!ZNF467;;chr2:100759010..100759035,-!p1@AFF3!1.21!15.22!AFF3;;chr1:8484007..8484061,-!p13@RERE!1.20!18.78!RERE;;chr17:38497662..38497713,+!p4@RARA!1.20!17.25!RARA;;chr12:10854646..10854658,-!p24@CSDA!1.20!14.72!CSDA;;chrX:107018836..107018862,-!p8@TSC22D3!1.20!14.72!TSC22D3;;chrX:106960285..106960299,-!p1@TSC22D3!1.19!378.05!TSC22D3;;chr2:28618532..28618610,+!p4@FOSL2!1.19!24.86!FOSL2;;chr5:131826457..131826514,-!p1@IRF1!1.17!531.81!IRF1;;chr12:53835425..53835437,+!p4@PRR13,p5@PCBP2!1.17!22.84!PCBP2;;chr9:32550965..32551031,-!p4@TOPORS!1.17!21.31!TOPORS;;chr16:3313791..3313834,+!p2@ZNF263!1.15!29.43!ZNF263;;chrX:131574281..131574293,-!p18@MBNL3!1.15!13.19!MBNL3;;chr19:50922187..50922204,+!p1@SPIB!1.15!13.19!SPIB;;chr2:231084659..231084721,-!p1@SP110!1.12!285.69!SP110;;chr9:117160738..117160782,-!p2@AKNA!1.12!50.74!AKNA;;chr7:115670804..115670825,-!p1@TFEC!1.12!12.18!TFEC;;chr17:37934365..37934387,-!p2@IKZF3!1.12!12.18!IKZF3;;chr5:88178983..88179012,-!p1@MEF2C!1.11!91.34!MEF2C;;chrX:106960180..106960197,-!p2@TSC22D3!1.11!45.67!TSC22D3;;chr4:185395191..185395226,-!p4@IRF2!1.11!16.75!IRF2;;chr2:70142189..70142223,+!p2@MXD1!1.10!83.73!MXD1;;chr12:54694686..54694697,-!p8@NFE2!1.10!11.67!NFE2;;chr12:6782377..6782382,-!p15@ZNF384!1.10!11.67!ZNF384;;chr19:56879534..56879615,+!p3@ZNF542!1.09!17.76!ZNF542;;chr5:142782823..142782854,-!p3@NR3C1!1.09!16.24!NR3C1;;chr6:106546808..106546833,+!p3@PRDM1!1.09!14.21!PRDM1;;chr20:56195525..56195556,-!p2@ZBP1!1.09!11.16!ZBP1;;chr2:208031542..208031595,-!p2@KLF7!1.08!78.65!KLF7;;chr14:75988771..75988826,+!p1@BATF!1.08!14.72!BATF;;chr17:38498594..38498661,+!p2@RARA!1.07!36.54!RARA;;chr7:64126535..64126559,+!p2@ZNF107!1.07!22.84!ZNF107;;chr10:31288398..31288455,-!p2@ZNF438!1.07!12.69!ZNF438;;chr1:47697881..47697910,-!p4@TAL1!1.07!10.66!TAL1;;chr2:208031943..208031978,-!p5@KLF7!1.06!14.21!KLF7;;chr4:185395590..185395627,-!p3@IRF2!1.06!13.19!IRF2;;chrX:107019163..107019179,-!p7@TSC22D3!1.06!12.18!TSC22D3;;chr9:137217986..137218049,+!p3@RXRA!1.05!29.94!RXRA;;chr2:231084639..231084654,-!p2@SP110!1.05!17.25!SP110;;chr4:106068026..106068084,+!p1@TET2!1.04!91.34!TET2;;chr12:10854595..10854628,-!p7@CSDA!1.04!14.21!CSDA;;chr7:149470540..149470596,-!p2@ZNF467!1.04!13.19!ZNF467;;chr4:57522166..57522260,-!p2@HOPX!1.03!11.16!HOPX;;chr9:135853402..135853417,+!p4@GFI1B!1.03!9.64!GFI1B;;chr1:23857087..23857100,-!p8@E2F2!1.03!9.64!E2F2;;chr1:47691303..47691319,-!p5@TAL1!1.03!9.64!TAL1;;chr14:99738059..99738086,-!p2@BCL11B!1.03!9.64!BCL11B;;chr2:145277640..145277771,-!p1@ZEB2!1.02!129.91!ZEB2;;chr21:30671235..30671253,+!p1@BACH1!1.01!120.77!BACH1;;chr3:71632840..71632857,-!p10@FOXP1!1.01!18.78!FOXP1;;chr3:71542615..71542644,-!p12@FOXP1!1.01!9.13!FOXP1;;chr7:50344251..50344288,+!p3@IKZF1!1.01!9.13!IKZF1;;chr8:71316021..71316068,-!p1@NCOA2!1.00!86.27!NCOA2;;chr11:128392273..128392308,-!p2@ETS1!0.99!38.06!ETS1;;chr6:15246200..15246214,+!p2@JARID2!0.99!24.86!JARID2;;chr3:71355163..71355209,-!p5@FOXP1!0.99!12.18!FOXP1;;chr17:38498402..38498445,+!p3@RARA!0.98!31.46!RARA;;chr3:187463220..187463232,-!p3@BCL6!0.98!26.39!BCL6;;chr17:37934204..37934241,-!p3@IKZF3!0.98!8.63!IKZF3;;chr6:135516877..135516900,+!p5@MYB!0.98!8.63!MYB;;chr7:50343895..50343936,+!p5@IKZF1!0.98!8.63!IKZF1;;chr19:19779619..19779670,+!p1@ZNF101!0.97!23.85!ZNF101;;chr8:67525443..67525459,-!p2@MYBL1!0.97!12.69!MYBL1;;chr2:70167296..70167306,+!p3@MXD1!0.96!12.69!MXD1;;chr19:13213954..13214021,-!p4@LYL1!0.96!8.12!LYL1;;chr5:140080022..140080042,+!p1@ZMAT2!0.95!440.97!ZMAT2;;chr6:108882109..108882173,+!p2@FOXO3!0.95!44.15!FOXO3;;chr15:60884706..60884743,-!p1@RORA!0.95!42.12!RORA;;chr19:42636586..42636607,-!p1@POU2F2!0.95!22.33!POU2F2;;chr4:38665769..38665801,+!p2@KLF3!0.94!71.55!KLF3;;chrX:70316005..70316034,+!p2@FOXO4!0.94!14.21!FOXO4;;chr4:57522513..57522548,-!p4@HOPX!0.94!7.61!HOPX;;chr6:108882175..108882186,+!p10@FOXO3!0.94!7.61!FOXO3;;chr6:108910863..108910912,+!p8@FOXO3!0.94!7.61!FOXO3;;chr17:38020392..38020477,-!p1@IKZF3!0.94!7.61!IKZF3;;chr11:16404108..16404124,-!p26@SOX6!0.94!7.61!SOX6;;chr9:88969339..88969422,-!p2@ZCCHC6!0.93!60.39!ZCCHC6;;chr6:108880956..108881011,+!p1@FOXO3!0.93!51.25!FOXO3;;chrX:107018969..107019024,-!p6@TSC22D3!0.93!10.66!TSC22D3;;chr1:67395833..67395851,+!p8@MIER1!0.93!9.13!MIER1;;chr14:65569186..65569243,-!p1@MAX!0.92!453.66!MAX;;chr4:140098339..140098392,-!p1@ELF2!0.91!61.40!ELF2;;chr10:94449703..94449718,+!p1@HHEX!0.91!28.92!HHEX;;chr12:10875658..10875708,-!p2@CSDA!0.91!16.75!CSDA;;chr1:221052776..221052799,+!p1@HLX!0.91!13.19!HLX;;chr5:88179195..88179224,-!p3@MEF2C!0.91!11.67!MEF2C;;chr11:47399920..47399931,-!p7@SPI1!0.91!7.10!SPI1;;chr14:23588242..23588262,-!p1@CEBPE!0.91!7.10!CEBPE;;chr3:141747950..141748004,-!p7@TFDP2!0.91!7.10!TFDP2;;chr9:20382446..20382493,-!p4@MLLT3!0.91!7.10!MLLT3;;chr1:47698007..47698019,-!p13@TAL1!0.91!7.10!TAL1;;chr16:68119324..68119364,+!p1@NFATC3!0.90!32.48!NFATC3;;chr10:51565156..51565167,+!p5@NCOA4!0.90!22.84!NCOA4;;chr6:91006518..91006570,-!p1@BACH2!0.89!16.24!BACH2;;chr6:15249128..15249177,+!p4@JARID2!0.89!12.69!JARID2;;chrX:48901030..48901050,-!p4@TFE3!0.89!8.63!TFE3;;chr21:36421535..36421610,-!p2@RUNX1!0.88!24.36!RUNX1;;chr10:8096631..8096660,+!p1@GATA3!0.88!8.12!GATA3;;chr10:111985777..111985788,+!p4@MXI1!0.88!6.60!MXI1;;chr21:34398234..34398250,+!p1@OLIG2!0.88!6.60!OLIG2;;chr2:68615063..68615089,+!p4@PLEK!0.88!6.60!PLEK;;chr4:109089901..109089930,-!p3@LEF1!0.88!6.60!LEF1;;chr4:109090075..109090095,-!p2@LEF1!0.88!6.60!LEF1;;chr4:57522598..57522664,-!p3@HOPX!0.88!6.60!HOPX;;chr7:137620650..137620677,-!p3@CREB3L2!0.88!6.60!CREB3L2;;chr2:208394817..2083948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chr1:173837572..173837581,+!p3@ZBTB37!0.48!2.03!ZBTB37;;chr1:47697859..47697869,-!p14@TAL1!0.48!2.03!TAL1;;chr20:56195509..56195520,-!p3@ZBP1!0.48!2.03!ZBP1;;chr4:26322616..26322652,+!p1@RBPJ!0.47!57.85!RBPJ;;chr16:31085714..31085783,+!p1@ZNF646!0.47!43.13!ZNF646;;chr1:247095194..247095235,-!p1@AHCTF1!0.47!28.42!AHCTF1;;chr12:57916466..57916523,+!p2@MBD6!0.47!23.34!MBD6;;chr7:149194756..149194839,-!p1@ZNF746!0.47!20.30!ZNF746;;chr19:58978418..58978456,+!p1@ZNF324!0.47!15.73!ZNF324;;chr19:53836985..53837024,+!p1@ZNF845!0.47!12.69!ZNF845;;chr19:19843900..19843928,-!p1@ZNF14!0.47!12.69!ZNF14;;chr19:19303619..19303651,+!p2@RFXANK!0.47!9.64!RFXANK;;chr19:9879350..9879419,-!p2@ZNF846!0.47!5.07!ZNF846;;chr19:49140572..49140594,-!p2@DBP!0.47!3.55!DBP;;chr9:2015275..2015287,+!p8@SMARCA2!0.47!3.55!SMARCA2;;chr7:21467746..21467758,+!p4@SP4!0.47!3.04!SP4;;chr3:141747441..141747452,-!p4@TFDP2!0.47!3.04!TFDP2;;chr8:145159357..145159373,+!p3@MAF1!0.46!32.98!MAF1;;chr16:88519669..88519726,+!p1@ZFPM1!0.46!23.34!ZFPM1;;chr8:48650697..48650708,-!p2@CEBPD!0.46!19.28!CEBPD;;chr7:150974206..150974255,-!p1@SMARCD3!0.46!15.73!SMARCD3;;chr19:58258167..58258201,+!p1@ZNF776!0.46!15.22!ZNF776;;chr19:45579725..45579743,-!p1@ZNF296!0.46!11.16!ZNF296;;chr3:101395936..101395962,-!p2@ZBTB11!0.46!9.64!ZBTB11;;chr19:44598498..44598529,+!p1@ZNF224!0.46!7.61!ZNF224;;chr1:6845582..6845591,+!p2@CAMTA1!0.46!4.57!CAMTA1;;chr19:58373157..58373159,+!p4@ZNF587!0.46!4.06!ZNF587;;chr15:31619535..31619569,+!p5@KLF13!0.46!4.06!KLF13;;chr20:34359925..34359991,+!p1@PHF20!0.45!113.16!PHF20;;chr17:38474489..38474548,+!p1@RARA!0.45!80.68!RARA;;chr3:141121164..141121249,+!p1@ZBTB38!0.45!43.13!ZBTB38;;chr12:6798410..6798503,-!p1@ZNF384!0.45!27.40!ZNF384;;chr4:124374..124410,+!p2@ZNF718!0.45!25.88!ZNF718;;chr13:41240717..41240735,-!p2@FOXO1!0.45!16.75!FOXO1;;chr3:39195037..39195069,-!p2@CSRNP1!0.45!15.22!CSRNP1;;chr2:145275162..145275202,-!p2@ZEB2!0.45!14.72!ZEB2;;chr19:58144529..58144579,+!p1@ZNF211!0.45!13.19!ZNF211;;chr7:21467674..21467727,+!p1@SP4!0.45!9.64!SP4;;chr18:32821037..32821057,+!p2@ZNF397!0.45!5.07!ZNF397;;chr20:48807615..48807644,+!p6@CEBPB!0.45!3.55!CEBPB;;chr6:44355478..44355489,+!p5@CDC5L!0.45!2.03!CDC5L;;chr4:81104865..81104886,+!p6@PRDM8!0.45!2.03!PRDM8;;chr7:27779729..27779819,+!p1@TAX1BP1!0.44!159.85!TAX1BP1;;chr3:101568349..101568365,+!p1@NFKBIZ!0.44!130.41!NFKBIZ;;chr8:145159376..145159407,+!p1@MAF1!0.44!103.01!MAF1;;chr1:235491462..235491510,-!p1@ARID4B!0.44!45.67!ARID4B;;chr14:90085458..90085557,-!p1@FOXN3!0.44!25.88!FOXN3;;chr4:47916588..47916607,-!p1@NFXL1!0.44!20.30!NFXL1;;chr19:18392274..18392286,-!p3@JUND!0.44!15.73!JUND;;chr10:43134001..43134026,-!p1@ZNF33B!0.44!10.66!ZNF33B;;chr19:36870087..36870110,-!p1@ZFP14!0.44!8.63!ZFP14;;chr2:231077626..231077651,-!p6@SP110!0.44!2.54!SP110;;chr13:74708246..74708264,-!p8@KLF12!0.44!2.03!KLF12;;chr1:155826967..155827018,-!p1@GON4L!0.43!42.63!GON4L;;chr17:4890919..4890985,-!p1@CAMTA2!0.43!22.33!CAMTA2;;chr15:77197655..77197716,-!p1@SCAPER!0.43!21.82!SCAPER;;chr19:12035913..12035933,+!p1@ZNF700,p1@ZNF763!0.43!15.22!ZNF700;;chr3:71179746..71179783,-!p7@FOXP1!0.43!7.61!FOXP1;;chr19:52674696..52674758,-!p1@ZNF836!0.43!6.60!ZNF836;;chr1:78444714..78444725,-!p3@FUBP1!0.43!6.09!FUBP1;;chr19:40502938..40502987,+!p1@ZNF546!0.43!5.58!ZNF546;;chr9:97021572..97021615,+!p1@ZNF169!0.43!5.58!ZNF169;;chr6:45389791..45389832,+!p3@RUNX2!0.43!5.58!RUNX2;;chr19:58326246..58326262,-!p2@ZNF552!0.43!5.07!ZNF552;;chr6:42419043..42419087,-!p2@TRERF1!0.43!4.06!TRERF1;;chr19:19779589..19779616,+!p2@ZNF101!0.43!4.06!ZNF101;;chr6:45390442..45390479,+!p8@RUNX2!0.43!3.04!RUNX2;;chr3:71632743..71632756,-!p16@FOXP1!0.43!3.04!FOXP1;;chr20:51588873..51588953,+!p1@TSHZ2!0.43!2.54!TSHZ2;;chr3:14989138..14989151,+!p6@NR2C2!0.43!2.03!NR2C2;;chr12:54785054..54785072,-!p4@ZNF385A!0.43!2.03!ZNF385A;;chr1:14075903..14075940,+!p1@PRDM2!0.42!51.25!PRDM2;;chr3:129158715..129158766,-!p2@MBD4!0.42!22.33!MBD4;;chr19:58281014..58281074,+!p1@ZNF586!0.42!19.28!ZNF586;;chr5:142784003..142784065,-!p2@NR3C1!0.42!19.28!NR3C1;;chr9:130186653..130186734,+!p1@ZNF79!0.42!17.25!ZNF79;;chr17:47439568..47439641,-!p2@ZNF652!0.42!13.19!ZNF652;;chr18:45456930..45456967,-!p2@SMAD2!0.42!12.69!SMAD2;;chr7:101459230..101459243,+!p2@CUX1!0.42!11.16!CUX1;;chr12:96588279..96588299,+!p4@ELK3!0.42!10.66!ELK3;;chr3:114866084..114866118,-!p2@ZBTB20!0.42!8.12!ZBTB20;;chr1:153895251..153895342,-!p2@GATAD2B!0.42!8.12!GATAD2B;;chr19:44598534..44598559,+!p2@ZNF224!0.42!6.60!ZNF224;;chr16:30569652..30569668,-!p2@ZNF764!0.42!3.04!ZNF764;;chr2:176033054..176033065,-!p4@ATF2!0.42!2.03!ATF2;;chr19:35759824..35759891,+!p1@USF2!0.41!72.57!USF2;;chr19:19932513..19932569,-!p1@ZNF506!0.41!44.15!ZNF506;;chr6:32157947..32157992,-!p1@PBX2!0.41!39.58!PBX2;;chr9:125675576..125675612,-!p1@ZBTB6!0.41!29.43!ZBTB6;;chr7:99156434..99156510,+!p2@ZNF655!0.41!13.70!ZNF655;;chr11:58346525..58346570,+!p1@ZFP91!0.41!10.66!ZFP91;;chrX:134477924..134477988,-!p1@ZNF75D!0.41!8.12!ZNF75D;;chr19:53238260.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+|fantom_cat=http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000222;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0000178;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0002193;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0002390
 |fonse_cell_line=
 |fonse_cell_line_closure=
@@ Line 39: / Line 41: @@
 |fonse_treatment_closure=
 |has_quality=
+|hg19bam=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/Whole%2520blood%2520%2528ribopure%2529%252c%2520donor090309%252c%2520donation1.CNhs11675.12179-129A1.hg19.nobarcode.bam
+|hg19ctss=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/Whole%2520blood%2520%2528ribopure%2529%252c%2520donor090309%252c%2520donation1.CNhs11675.12179-129A1.hg19.ctss.bed.gz
+|hg19fasta=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/Whole%2520blood%2520%2528ribopure%2529%252c%2520donor090309%252c%2520donation1.CNhs11675.12179-129A1.hg19.nobarcode.rdna.fa.gz
+|hg38bam=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.primary_cell.hCAGE/Whole%2520blood%2520%2528ribopure%2529%252c%2520donor090309%252c%2520donation1.CNhs11675.12179-129A1.hg38.nobarcode.bam
+|hg38ctss=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.primary_cell.hCAGE/Whole%2520blood%2520%2528ribopure%2529%252c%2520donor090309%252c%2520donation1.CNhs11675.12179-129A1.hg38.nobarcode.ctss.bed.gz
 |id=FF:12179-129A1
 |is_a=EFO:0002091;;FF:0000002;;FF:0000281
 |is_obsolete=
 |library_id=CNhs11675!RDhi10000
-|library_ids=CNhs11675!RDhi10000
+|library_id_phase_based=2:CNhs11675
+|microRNAs=
+|microRNAs_nn=
+|microRNAs_nonnovel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer/#/human#cage;sample;12179
+|microRNAs_novel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer_novel/#/human#cage;sample;12179
 |name=Whole blood (ribopure), donor090309, donation1
 |namespace=FANTOM5
@@ Line 49: / Line 60: @@
 |profile_cagescan=,,,
 |profile_hcage=CNhs11675,LSID808,release008,COMPLETED
-|profile_rnaseq=RDhi10000,,,
+|profile_rnaseq=
 |profile_srnaseq=,,,
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@@ Line 88: / Line 100: @@
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+|zenbu_report=https://fantom.gsc.riken.jp/zenbu/reports/#miRNA_expression_atlas_human;search_select_hide=table111:FF:12179-129A1;search_select_hide=table117:FF:12179-129A1
 }}

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FF:12179-129A1: Difference between revisions

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Latest revision as of 18:33, 4 June 2020

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	Mozilla Cavendish skin modified by DaSch for the Web Community Wiki GitHub project page – Report a bug – Skin version: 2.6.0