FF:12183-129A5: Difference between revisions

Latest revision as of 18:33, 4 June 2020

Name:	Whole blood (ribopure), donor090612, donation2
Species:	Human (Homo sapiens)
Library ID:	CNhs11673,RDhi10004
Sample type:	primary cells
Genomic View:	UCSC
RefEX:	Specific genes
FANTOM CAT:	1, 2, 3, 4
CAGEd-oPOSSUM:	link
ZENBU report :	link

Additional information

Sample information

strain	NA
tissue	blood
dev stage	NA
sex	NA
age	NA
cell type	CELL MIXTURE - tissue sample
cell line	NA
company	NA
collaboration	Matched_genome_OSC(contact:Al Forrest)
External link for information	[{{{sample_info_link}}} {{{sample_info_link}}}]

RNA information

lot number	NA
catalog number	NA
sample type	total RNA
extraction protocol (Details)	NA

CAGE Accession numbers

Method		Sample accession id
RNA-Seq		SAMD00013681

Library accession numbers

Library id		Method		Exp. accession id		Run accession id
CNhs11673		CAGE		DRX008535		DRR009407
RDhi10004		RNA-Seq		DRX012357		DRR013805

Accession ID Hg19

Library id		BAM		CTSS
CNhs11673		DRZ000832		DRZ002217
RDhi10004		DRZ003006

Accession ID Hg38

Library id		BAM		CTSS
CNhs11673		DRZ012182		DRZ013567
RDhi10004

Download raw sequence, BAM & CTSS

Hg19

Fasta	BAM	CTSS
download	download	donwload

Hg38

BAM	CTSS
download	donwload

Relative expression to median (log10)

Transcription factors with enriched expression in this sampleRanked list of transcription factor promoter expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.

Co-expression clusters with enriched expression in this sampleRanked list of co-expression cluster expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed. Analyst:NA link to dataset. data

Coexpression cluster	score
C0-CD14-Eosinophils-Neutrophils-Basophils-CD34-immature-Peripheral	0
C1-testis-epididymis-embryonic-medulla-pituitary-trachea-caudate	0
C10-occipital-temporal-parietal-brain-duodenum-Neurons-Neural	0
C100-rhabdomyosarcoma-gastric-pineal-Wilms-cervical-mesodermal-endometrial	0
C101-small-cerebellum-maxillary-colon-parietal-epididymis-merkel	0
C102-neuroblastoma-testicular-pituitary-carcinosarcoma-rectum-acantholytic-iPS	0
C103-CD4-CD8-Natural-Peripheral-Whole-Neutrophils-Basophils	0
C104-Mast-Basophils-immature-CD14-CD34-eye-Natural	0
C105-heart-skeletal-occipital-hippocampus-acute-Sebocyte-penis	-0.0787
C106-Hep2-epitheloid-placenta-cervical-rectal-anaplastic-glassy	0
C107-Neutrophils-CD14-Eosinophils-Monocytederived-Whole-Peripheral-blood	0
C108-breast-hepatoblastoma-MCF7-parotid-salivary-submaxillary-prostate	0
C109-Reticulocytes-non-acute-Hodgkin-Burkitt-retinoblastoma-lymphoma	-0.347
C11-cerebellum-medulla-pons-parietal-occipital-middle-medial	0
C110-leukemia-chronic-Eosinophils-acute-Whole-CD34-Lymphatic	0
C111-medulla-lung-trachea-testis-caudate-epididymis-throat	0
C112-gastric-pancreas-temporal-duodenum-small-extraskeletal-adrenal	0
C113-thyroid-throat-lung-lymph-small-colon-trachea	0
C114-teratocarcinoma-medulloblastoma-carcinosarcoma-iPS-anaplastic-acute-neuroblastoma	0
C115-pituitary-Neural-caudate-putamen-amygdala-medulla-hippocampus	0
C116-myeloma-xeroderma-tonsil-CD19-spleen-lymph-trachea	0
C117-serous-clear-kidney-neuroectodermal-mesothelioma-endometrial-Intestinal	0
C118-cerebellum-parietal-occipital-medial-middle-frontal-insula	0
C119-CD4-CD8-Natural-Neutrophils-CD14-Peripheral-CD19	0
C12-Mast-Basophils-immature-chorionic-mature-CD14-Eosinophils	0
C120-immature-salivary-tongue-skin-cervical-CD14-CD34	0
C121-NK-Natural-CD8-CD4-anaplastic-chronic-B	0
C122-chronic-Reticulocytes-skeletal-leukemia-acute-colon-Tracheal	0
C123-CD19-Natural-CD8-CD4-CD14-Peripheral-Basophils	0
C124-small-temporal-duodenum-colon-gall-signet-Hepatocyte	0
C125-mucinous-alveolar-mesothelioma-Smooth-lung-CD14-Nucleus	0
C126-gastrointestinal-argyrophil-smallcell-merkel-bile-insula-brain	0
C127-maxillary-small-hepatoblastoma-hepatocellular-alveolar-colon-argyrophil	0
C128-testicular-choriocarcinoma-H9-teratocarcinoma-pancreatic-iPS-HES3GFP	0
C129-liver-Hepatocyte-colon-duodenum-temporal-testicular-small	0
C13-Neutrophils-Eosinophils-CD14-Monocytederived-Whole-Peripheral-CD4	0.144
C130-iPS-HES3GFP-H9-teratocarcinoma-testicular-colon-Alveolar	0
C131-lung-trachea-Alveolar-thyroid-umbilical-throat-skin	0
C132-acute-small-Dendritic-Macrophage-CD14-Neutrophils-Monocytederived	0
C133-signet-gall-small-kidney-colon-ductal-adenocarcinoma	0
C134-skeletal-diaphragm-tongue-throat-Skeletal-skin-penis	0
C135-neuroblastoma-retinoblastoma-carcinoid-choriocarcinoma-testicular-acute-rectum	0
C136-Wilms-extraskeletal-anaplastic-rhabdomyosarcoma-cholangiocellular-nonsmall-neuroectodermal	0
C137-large-ductal-melanoma-cervical-Endothelial-Smooth-chronic	0
C138-diffuse-Burkitt-lymphangiectasia-lymphoma-acute-CD19-pineal	0
C139-astrocytoma-skin-salivary-gall-serous-Mallassezderived-renal	0
C14-Whole-blood-Reticulocytes-liver-Neutrophils-Eosinophils-spleen	1.193
C140-Renal-Endothelial-Hepatic-Lymphatic-heart-lung-spleen	0
C141-Hodgkin-acute-thymus-chronic-vein-CD4-B	0
C142-Preadipocyte-Fibroblast-hepatic-Ewing-Adipocyte-Olfactory-Hair	0
C143-Monocytederived-CD14-Macrophage-Dendritic-Basophils-CD14CD16-Osteoblast	0.188
C144-CD4-tonsil-NK-appendix-CD8-splenic-mycosis	0
C145-neuroblastoma-peripheral-neuroectodermal-neuroepithelioma-carcinoid-adult-extraskeletal	0
C146-lymphangiectasia-lymphoma-gall-lymph-tonsil-gastric-transitionalcell	0
C147-Neutrophils-Eosinophils-CD4-CD14-CD8-Natural-Peripheral	0
C148-kidney-small-epididymis-pancreas-serous-duodenum-temporal	0
C149-occipital-medial-brain-amygdala-parietal-cerebral-cerebellum	0
C15-anaplastic-small-skeletal-neuroblastoma-parietal-temporal-tongue	0
C150-merkel-carcinoid-nonsmall-gastrointestinal-argyrophil-pineal-small	0
C151-CD14-Natural-Basophils-CD8-Eosinophils-CD4-Mast	0
C152-peripheral-neuroectodermal-neuroepithelioma-neuroblastoma-testicular-carcinoid-lung	0
C153-rhabdomyosarcoma-liposarcoma-pancreatic-somatostatinoma-Reticulocytes-lymphoma-testicular	0
C154-adenocarcinoma-Mesenchymal-Cardiac-small-sacrococcigeal-Smooth-Prostate	0
C155-pituitary-placenta-nonsmall-cervical-smallcell-choriocarcinoma-epitheloid	0
C156-plasma-splenic-hereditary-B-large-xeroderma-b	0
C157-testicular-H9-testis-iPS-teratocarcinoma-colon-trachea	0
C158-adrenal-gastric-temporal-parietal-duodenum-caudate-putamen	0
C159-choriocarcinoma-pancreatic-placenta-chorionic-testicular-bronchioalveolar-seminal	0
C16-medial-amygdala-occipital-parietal-olfactory-putamen-brain	0
C160-medulla-Hepatocyte-retina-corpus-liver-pineal-cerebral	0
C161-mesothelioma-Mesothelial-acute-mesenchymal-extraskeletal-renal-placenta	0
C162-spinal-locus-medulla-substantia-thalamus-globus-diencephalon	0
C163-Skeletal-skeletal-Pericytes-Hepatic-rhabdomyosarcoma-throat-mesenchymal	0
C164-signet-corpus-optic-mucinous-substantia-salivary-choriocarcinoma	0
C165-epithelioid-Adipocyte-mesothelioma-myxofibrosarcoma-lung-gastric-Mesothelial	0
C166-Macrophage-Monocytederived-Dendritic-adipose-lymph-CD14-lung	0
C167-Basophils-Mast-Eosinophils-Neutrophils-Peripheral-Whole-CD4	0
C168-Mast-CD14-immature-Basophils-Eosinophils-CD34-Peripheral	0
C169-hereditary-adult-gall-lymphangiectasia-chronic-b-choriocarcinoma	0
C17-Mast-CD14-Monocytederived-Lymphatic-Smooth-mesenchymal-Macrophage	0
C170-epitheloid-cervical-Hep2-keratoacanthoma-adult-neuroblastoma-signet	0
C171-merkel-neuroblastoma-pineal-retinoblastoma-carcinoid-small-eye	0
C172-chorionic-skeletal-tongue-amniotic-liver-gastrointestinal-Pericytes	0
C173-Adipocyte-mature-skin-left-Hepatocyte-Osteoblast-adipose	0
C174-CD14-Neutrophils-Smooth-mesothelioma-embryonic-Monocytederived-Eosinophils	0
C175-Eosinophils-Neutrophils-CD4-Basophils-CD19-CD8-Natural	0.477
C176-Eosinophils-Neutrophils-Mast-CD14-CD4-Basophils-CD19	0.384
C177-melanoma-Melanocyte-mesenchymal-retina-Mallassezderived-Gingival-squamous	0
C178-spleen-liver-Hepatocyte-b-lymph-vein-thymus	0
C179-CD19-Peripheral-lymphoma-blood-lymph-spleen-tonsil	0
C18-CD4-CD8-thymus-Whole-Peripheral-Natural-blood	0.5
C180-skeletal-heart-Hepatocyte-acute-occipital-hippocampus-middle	-0.445
C181-liposarcoma-somatostatinoma-neuroblastoma-mesothelioma-nonsmall-small-Alveolar	0
C182-renal-mature-mesothelioma-lung-Mammary-Adipocyte-acute	0
C183-acute-non-CD34-diffuse-CD133-myeloma-Burkitt	0
C184-somatostatinoma-smallcell-nonsmall-small-gastrointestinal-pineal-thyroid	0
C185-small-adrenal-gastric-Mesenchymal-acute-HES3GFP-testis	0
C186-squamous-papillotubular-large-Tracheal-oral-Small-epidermoid	0
C187-migratory-immature-Dendritic-CD19-CD14-Monocytederived-Macrophage	0.188
C188-left-heart-tongue-skeletal-Skeletal-diaphragm-throat	0
C189-b-splenic-tonsil-CD19-lymph-appendix-spleen	0
C19-embryonic-testis-cord-chronic-CD14-NK-mesothelioma	0
C190-colon-small-rectum-duodenum-appendix-temporal-oral	0
C191-leiomyoblastoma-Mast-parietal-acute-bone-neuroepithelioma-embryonic	0
C192-Neutrophils-CD14-Peripheral-Eosinophils-CD8-Natural-CD4	0
C193-Mesenchymal-Adipocyte-mature-Cardiac-heart-CD14CD16-CD14	0
C194-MCF7-breast-prostate-Intestinal-diffuse-Wilms-Alveolar	0
C195-Small-Gingival-Bronchial-Smooth-mesenchymal-Urothelial-Tracheal	0
C196-testicular-iPS-H9-teratocarcinoma-HES3GFP-choriocarcinoma-endometrial	0
C197-tongue-esophagus-tonsil-salivary-cervix-nasal-Gingival	0
C198-Mesenchymal-Hair-Hepatic-Fibroblast-Smooth-tenocyte-Pericytes	0
C199-glioblastoma-B-osteosarcoma-Fibroblast-heart-rhabdomyosarcoma-myxofibrosarcoma	0
C2-Eosinophils-Neutrophils-CD14-Whole-Basophils-Peripheral-Mast	0.318
C20-heart-left-skeletal-diaphragm-tongue-umbilical-throat	0
C200-seminal-Cardiac-Smooth-Hair-submaxillary-Neutrophils-mixed	0.0581
C201-colon-small-adenocarcinoma-duodenum-temporal-signet-gall	0
C202-salivary-skin-penis-tongue-uterus-cervical-immature	0
C203-acute-NK-chronic-CD133-lymphoma-immature-Dendritic	0
C204-Smooth-nasal-CD4-CD19-CD8-CD14-CD34	0
C205-mycosis-cord-hairy-xeroderma-CD4-B-b	0
C206-melanoma-somatostatinoma-nonsmall-small-neuroblastoma-smallcell-pituitary	0
C207-Corneal-Keratinocyte-Esophageal-Mammary-Bronchial-Urothelial-Sebocyte	0
C208-skin-amniotic-papillotubular-salivary-umbilical-Alveolar-serous	0
C209-acute-myelodysplastic-CD34-granulocyte-CD133-liver-spleen	0
C21-cord-mycosis-hairy-xeroderma-adult-CD4-anaplastic	0
C210-Burkitt-lymphoma-appendix-acute-diffuse-CD19-tonsil	0
C211-small-Hepatocyte-liver-colon-temporal-duodenum-kidney	0
C212-chronic-acute-Whole-Reticulocytes-leukemia-blood-CD34	0
C213-CD14-Natural-CD8-CD4-Basophils-Eosinophils-Peripheral	0
C214-Neurons-Neural-duodenum-temporal-occipital-parietal-brain	0
C215-chronic-acute-peripheral-Hepatocyte-osteosarcoma-NK-immature	0
C216-osteosarcoma-Smooth-Mesenchymal-large-neuroectodermal-acute-CD34	0
C217-carcinoid-neuroectodermal-mature-mesodermal-colon-acute-occipital	0
C218-tonsil-lymph-CD19-spleen-colon-appendix-salivary	0.5
C219-nasal-Basophils-amniotic-Melanocyte-CD14-Osteoblast-duodenum	0
C22-CD4-CD8-Natural-Basophils-CD14-Peripheral-CD19	0
C220-Adipocyte-mature-left-breast-skin-liver-adipose	0
C221-alveolar-Osteoblast-Myoblast-mesenchymal-liposarcoma-Smooth-hepatocellular	0
C222-Melanocyte-Tracheal-Neutrophils-seminal-Smooth-Hair-Chondrocyte	0.0494
C223-Chondrocyte-basal-renal-Fibroblast-Smooth-spindle-Synoviocyte	0
C224-clear-serous-pleomorphic-choriocarcinoma-mesothelioma-amniotic-renal	0
C225-ductal-alveolar-giant-prostate-salivary-squamous-Tracheal	0
C226-Corneal-Keratinocyte-Esophageal-Urothelial-Mammary-Bronchial-Tracheal	0
C227-chorionic-amniotic-Mesenchymal-Placental-gastric-diaphragm-tongue	0
C228-colon-Intestinal-Prostate-hepatoblastoma-hepatocellular-testis-adult	0
C229-Mesenchymal-CD4-Melanocyte-acute-skeletal-left-heart	0
C23-CD4-CD8-Natural-Peripheral-Basophils-CD19-CD14	0
C230-aorta-normal-heart-penis-osteosarcoma-basal-lung	0
C231-Mesothelial-mesenchymal-mesothelioma-Fibroblast-Preadipocyte-leiomyoma-mycosis	0
C232-teratocarcinoma-HES3GFP-H9-iPS-testicular-neuroblastoma-cerebellum	0
C233-uterus-cervix-ovary-epididymis-colon-rectum-MCF7	0
C234-oral-epidermoid-malignant-cervical-ductal-lung-keratoacanthoma	0
C235-Intestinal-Prostate-liver-colon-small-kidney-pancreas	0
C236-CD14-Neutrophils-Monocytederived-renal-Eosinophils-testis-mesothelioma	0
C237-acute-breast-testicular-hepatoblastoma-chronic-argyrophil-Bronchial	0
C238-stomach-gall-breast-duodenum-temporal-MCF7-smallcell	0
C239-CD4-lymphangiectasia-CD8-NK-mycosis-Renal-hairy	0.318
C24-pineal-eye-retina-retinoblastoma-medulloblastoma-small-cerebral	0
C240-Adipocyte-Preadipocyte-Osteoblast-Chondrocyte-tenocyte-Synoviocyte-mesenchymal	0
C241-Reticulocytes-chronic-Tracheal-Hodgkin-Endothelial-Hair-thymus	-0.326
C242-acute-Chondrocyte-myelodysplastic-granulocyte-biphenotypic-Fibroblast-stomach	0
C243-Chondrocyte-trachea-Synoviocyte-mesodermal-renal-Fibroblast-Ewing	0
C244-CD14-Monocytederived-Hepatocyte-heart-Neutrophils-acute-Macrophage	0
C245-prostate-penis-salivary-esophagus-kidney-Neutrophils-Pancreatic	0
C246-Neutrophils-Eosinophils-Whole-CD14-CD14CD16-Basophils-migratory	1.093
C247-pons-locus-medulla-spinal-paracentral-medial-occipital	0
C248-iPS-Aortic-Hep2-amygdala-acute-medial-Myoblast	0
C249-nonsmall-small-smallcell-occipital-somatostatinoma-maxillary-medial	0
C25-small-colon-temporal-duodenum-liver-Hepatocyte-gall	0
C250-Mast-Neutrophils-CD14-Eosinophils-CD8-Peripheral-CD4	0.17
C251-gall-tonsil-trachea-CD14-salivary-throat-tongue	0
C252-hepatic-Olfactory-sacrococcigeal-leiomyoma-normal-Synoviocyte-glioblastoma	0
C253-spleen-rhabdomyosarcoma-Hepatocyte-small-uterus-liver-rectum	0
C254-prostate-rhabdomyosarcoma-seminal-Fibroblast-transitionalcell-Smooth-Iris	0
C255-Wilms-leiomyoblastoma-kidney-adrenal-MCF7-epithelioid-Mast	0
C256-occipital-caudate-amygdala-medial-thalamus-hippocampus-medulla	0
C257-pineal-insula-frontal-occipital-temporal-medial-paracentral	0
C258-hepatoblastoma-hepatocellular-signet-colon-Intestinal-Prostate-gastric	0
C259-Preadipocyte-Adipocyte-Fibroblast-Chondrocyte-tenocyte-normal-Ewing	0
C26-Eosinophils-Neutrophils-CD14-CD14CD16-Basophils-Monocytederived-Whole	0.547
C260-acute-chronic-Natural-NK-Basophils-biphenotypic-blood	0
C261-locus-medial-parietal-pons-diencephalon-olfactory-spinal	0
C262-breast-MCF7-skeletal-Reticulocytes-mucinous-hepatoblastoma-Wilms	0
C263-cervical-keratoacanthoma-tongue-skin-esophagus-throat-tonsil	0
C264-giant-keratoacanthoma-colon-fibrosarcoma-HES3GFP-Hep2-acute	0
C265-CD4-Eosinophils-CD14-Natural-CD19-Basophils-CD8	0.262
C266-acute-chronic-leukemia-small-choriocarcinoma-hepatoma-Mast	0
C267-pancreatic-placenta-choriocarcinoma-testicular-teratocarcinoma-chorionic-clear	0
C268-Mallassezderived-Urothelial-Gingival-Small-Bronchial-Tracheal-Prostate	0
C269-Basophils-Mast-Eosinophils-mature-CD14-chorionic-CD4	0
C27-pancreas-temporal-duodenum-salivary-ductus-umbilical-lung	0
C270-CD4-Fibroblast-acute-iPS-Aortic-CD34-Smooth	0
C271-pineal-spinal-locus-globus-medulla-thalamus-cerebellum	0
C272-CD19-CD4-CD8-Whole-Peripheral-lymph-tonsil	0.5
C273-Neutrophils-CD14-Eosinophils-Monocytederived-CD4-Natural-Mast	0.127
C274-CD14-Mast-immature-Basophils-mature-vagina-Hepatocyte	0
C275-pons-medulla-cerebellum-locus-thalamus-diencephalon-spinal	0
C276-mesothelioma-kidney-renal-small-clear-cerebellum-Renal	0
C277-mesothelioma-epithelioid-thyroid-extraskeletal-alveolar-glioblastoma-adenocarcinoma	0
C278-amygdala-hippocampus-insula-medial-putamen-temporal-olfactory	0
C279-parietal-cerebellum-occipital-temporal-middle-duodenum-medial	0
C28-thymus-acute-vein-Hodgkin-chronic-throat-Dendritic	0
C280-Mast-Natural-CD19-CD8-Eosinophils-CD34-CD4	0.0861
C281-Hodgkin-Reticulocytes-chronic-NK-acute-retinoblastoma-small	-0.659
C282-acute-B-tonsil-CD19-submaxillary-lymph-throat	0
C283-tenocyte-Chondrocyte-mesenchymal-Macrophage-pleomorphic-Synoviocyte-cholangiocellular	0
C284-parietal-occipital-medial-temporal-olfactory-locus-hippocampus	0
C285-cervical-Hep2-small-colon-temporal-duodenum-bronchogenic	0
C286-cerebellum-occipital-optic-parietal-globus-caudate-medial	0
C287-Hepatocyte-Chondrocyte-Adipocyte-Synoviocyte-liver-tenocyte-mesenchymal	0
C288-Chondrocyte-Renal-Pericytes-Fibroblast-aorta-Smooth-Meningeal	0
C289-chorionic-skeletal-heart-Mast-amniotic-granulosa-left	0
C29-mature-adipose-Adipocyte-breast-Lymphatic-vein-heart	0
C290-Eosinophils-CD14-Basophils-Mast-CD4-CD8-immature	0.2
C291-spinal-substantia-retina-medulla-tongue-skeletal-trachea	0
C292-Mesenchymal-skin-umbilical-Adipocyte-mesenchymal-Chondrocyte-skeletal	0
C293-CD14-CD14CD16-Basophils-Peripheral-immature-Eosinophils-CD34	0
C294-CD14-Macrophage-Monocytederived-CD14CD16-Neutrophils-Basophils-Peripheral	0.662
C295-Fibroblast-Smooth-Myoblast-Chondrocyte-hepatic-Synoviocyte-Preadipocyte	0
C296-gall-small-mesothelioma-acute-bronchioalveolar-epidermoid-mixed	0
C297-Eosinophils-CD4-Basophils-Natural-Neutrophils-CD8-Peripheral	0.188
C298-small-optic-substantia-thalamus-diencephalon-globus-occipital	0
C299-CD14CD16-Eosinophils-Neutrophils-CD14-Whole-Basophils-blood	0.679
C3-occipital-temporal-insula-medial-postcentral-frontal-amygdala	0
C30-thyroid-throat-mesothelioma-mucinous-trachea-chorionic-mesenchymal	0
C300-CD4-CD8-NK-Natural-blood-mycosis-Basophils	0.188
C301-Smooth-mesenchymal-Endothelial-Hepatic-basal-hepatic-chorionic	0
C302-acute-peripheral-Neutrophils-NK-myelodysplastic-CD34-carcinoid	0
C303-CD14-Basophils-Peripheral-Eosinophils-CD14CD16-Neutrophils-Whole	0
C305-heart-skeletal-smooth-left-bladder-penis-esophagus	0
C31-skeletal-tongue-diaphragm-throat-penis-skin-trachea	0
C32-middle-occipital-parietal-hippocampus-amygdala-medial-olfactory	0
C33-Reticulocytes-liver-Whole-blood-chronic-acute-spleen	0.188
C34-placenta-chorionic-choriocarcinoma-mesothelioma-Wilms-Smooth-bile	0
C35-caudate-putamen-diencephalon-nucleus-globus-thalamus-insula	0
C36-B-b-splenic-plasma-xeroderma-adrenal-Burkitt	0
C37-salivary-submaxillary-parotid-seminal-tongue-ductus-trachea	0
C38-extraskeletal-rhabdomyosarcoma-adrenal-rectal-mesothelioma-lung-Wilms	0
C39-epididymis-ductus-seminal-testis-acute-thyroid-CD133	0
C4-optic-corpus-substantia-medulla-spinal-thalamus-globus	0
C40-eye-retina-Lens-pineal-tongue-retinoblastoma-small	0
C41-retina-eye-medulla-Retinal-medulloblastoma-kidney-pineal	0
C42-small-lung-maxillary-pharyngeal-Mesenchymal-Wilms-colon	0
C43-ductus-seminal-duodenum-temporal-gall-prostate-bladder	0
C44-Dendritic-CD19-CD133-granulocyte-acute-thymus-immature	0
C45-testicular-choriocarcinoma-H9-teratocarcinoma-Wilms-pancreatic-iPS	0
C46-acute-Hodgkin-thymus-CD8-chronic-CD4-merkel	0
C47-CD19-Burkitt-acute-xeroderma-tonsil-lymphoma-appendix	0.188
C48-smooth-bladder-esophagus-colon-penis-aorta-uterus	0
C49-H9-iPS-testicular-HES3GFP-teratocarcinoma-hepatoblastoma-choriocarcinoma	0
C5-Hepatocyte-liver-hepatocellular-Intestinal-kidney-small-pancreas	0
C50-chorionic-placenta-amniotic-migratory-smallcell-chronic-choriocarcinoma	0
C51-kidney-mesothelioma-renal-signet-gall-lung-pancreas	0
C52-adult-NK-chronic-cord-testis-embryonic-myeloma	0
C53-medulloblastoma-pineal-retinoblastoma-small-retina-eye-pituitary	0
C54-Dendritic-Macrophage-Monocytederived-CD14-leiomyoma-adipose-immature	0
C55-hepatocellular-Intestinal-liver-Prostate-fibrosarcoma-Hepatocyte-hepatoblastoma	0
C56-heart-left-umbilical-skeletal-penis-diaphragm-tongue	0
C57-Neutrophils-Eosinophils-Whole-CD4-CD8-CD19-Natural	0.886
C58-Melanocyte-melanoma-retina-Retinal-eye-migratory-H9	0
C59-Smooth-Fibroblast-Mesenchymal-tenocyte-Ewing-skin-hepatic	0
C6-CD14-Eosinophils-Basophils-Peripheral-CD34-Natural-immature	0
C60-esophagus-tonsil-throat-tongue-uterus-cervix-cervical	0
C61-migratory-Dendritic-immature-Macrophage-xeroderma-cord-b	0
C62-Burkitt-tonsil-CD19-submaxillary-spleen-salivary-lymph	0
C63-neuroectodermal-neuroblastoma-carcinoid-peripheral-chronic-neuroepithelioma-acute	0
C64-Mast-chronic-acute-immature-chorionic-Basophils-Dendritic	0
C65-CD14-Eosinophils-Monocytederived-Basophils-immature-Macrophage-Neutrophils	0
C66-cerebellum-middle-occipital-parietal-medial-amygdala-hippocampus	0
C67-CD14-Monocytederived-Macrophage-dura-Dendritic-spleen-lung	0
C68-amniotic-chorionic-Placental-salivary-placenta-tongue-mesothelioma	0
C69-anaplastic-CD14-cord-hairy-mycosis-adult-NK	0
C7-CD14-Eosinophils-Neutrophils-Smooth-Basophils-Macrophage-Mast	0
C70-parotid-submaxillary-salivary-throat-trachea-aorta-tongue	0
C71-Monocytederived-Macrophage-CD14-Dendritic-Osteoblast-leiomyoma-Prostate	0
C72-skeletal-tongue-throat-heart-diaphragm-penis-left	0
C73-pineal-eye-retina-caudate-cerebellum-left-parietal	0
C74-splenic-B-b-plasma-xeroderma-lymphoma-hairy	0
C75-Eosinophils-Natural-CD8-Basophils-CD14-CD4-Peripheral	0
C76-argyrophil-gastrointestinal-temporal-duodenum-neuroblastoma-merkel-smallcell	0
C77-Saos2-osteosarcoma-Neutrophils-Natural-Chondrocyte-Basophils-CD8	0
C78-lymphoma-plasma-tonsil-appendix-lymph-seminal-trachea	0
C79-chorionic-Chondrocyte-Cardiac-Smooth-Fibroblast-Preadipocyte-Mesenchymal	0
C8-Natural-CD8-Basophils-CD4-CD14-Peripheral-CD34	0
C80-immature-migratory-CD14-Dendritic-splenic-cord-Mast	0
C81-trachea-salivary-throat-aorta-eye-submaxillary-parotid	0
C82-Basophils-CD14-Eosinophils-Natural-Peripheral-immature-CD34	0
C83-choriocarcinoma-pancreatic-placenta-chorionic-HES3GFP-testicular-amniotic	0
C84-choriocarcinoma-pancreatic-Wilms-Mallassezderived-thymus-salivary-colon	0
C85-neuroblastoma-carcinoid-retinoblastoma-small-pineal-rhabdomyosarcoma-medulloblastoma	0
C86-colon-carcinoid-small-neuroectodermal-giant-large-neuroepithelioma	0
C87-retinoblastoma-left-nonsmall-heart-small-diaphragm-bronchogenic	0
C88-Melanocyte-melanoma-Macrophage-Mesenchymal-migratory-Dendritic-Monocytederived	0
C89-small-retinoblastoma-medulloblastoma-iPS-acantholytic-eye-bronchogenic	0
C9-skeletal-diaphragm-tongue-throat-penis-heart-left	0
C90-neuroectodermal-peripheral-neuroepithelioma-neuroblastoma-carcinoid-parietal-putamen	0
C91-Fibroblast-Smooth-mesenchymal-Mesothelial-Small-Preadipocyte-Hair	0
C92-CD14CD16-CD14-Eosinophils-Basophils-Neutrophils-Macrophage-Whole	0.188
C93-chronic-acute-leukemia-acantholytic-medulloblastoma-testis-papillotubular	0
C94-smallcell-adrenal-lung-nonsmall-small-somatostatinoma-teratocarcinoma	0
C95-lung-aorta-trachea-penis-Alveolar-throat-endometrioid	0
C96-non-acute-tonsil-spleen-Burkitt-lymphoma-appendix	0
C97-small-smallcell-gastrointestinal-argyrophil-putamen-duodenum-brain	0
C98-CD8-Natural-Basophils-blood-CD4-Peripheral-Whole	0.5
C99-hairy-mycosis-submaxillary-salivary-cord-kidney-parotid	0

Repeat families with enriched expression in this sampleSummary:Ranked list of repeat family expression in this sample relative tothe median expression in the FANTOM5 collection is shown. Value is log10transformed. Analyst:NA link to dataset. data

TFBS(DNA)motifs over-represented in proximal region of promoters active in this sample

JASPAR motifsSummary:Association of JASPAR motif to the promoter expression in thissample. Pearson's correlation between the number of TFBSs estimated byusing the position-weight matrix for each promoter and its expression isexpressed as Z-score by taking the ones based on random position-weightmatrix, and the tail probability of the normal distribution correspondingto the Z-score is taken as the resulting P-value. Lower P-value indicatesmore (non-random) association of the motif to promoter expression Analyst: Michiel de Hoon link to dataset. data

library id: CNhs11673

Jaspar motif	Logo	P-value
MA0002.2	MA0002.2	6.42229e-12
MA0003.1	MA0003.1	0.0395
MA0004.1	MA0004.1	0.554
MA0006.1	MA0006.1	0.704
MA0007.1	MA0007.1	0.61
MA0009.1	MA0009.1	0.0256
MA0014.1	MA0014.1	0.945
MA0017.1	MA0017.1	0.0459
MA0018.2	MA0018.2	0.205
MA0019.1	MA0019.1	0.874
MA0024.1	MA0024.1	0.0115
MA0025.1	MA0025.1	0.37
MA0027.1	MA0027.1	0.384
MA0028.1	MA0028.1	0.396
MA0029.1	MA0029.1	0.589
MA0030.1	MA0030.1	0.015
MA0031.1	MA0031.1	3.60131e-4
MA0035.2	MA0035.2	2.28497e-4
MA0038.1	MA0038.1	0.0325
MA0039.2	MA0039.2	0.112
MA0040.1	MA0040.1	0.0285
MA0041.1	MA0041.1	0.153
MA0042.1	MA0042.1	0.0455
MA0043.1	MA0043.1	0.163
MA0046.1	MA0046.1	0.25
MA0047.2	MA0047.2	0.221
MA0048.1	MA0048.1	0.127
MA0050.1	MA0050.1	1.60079e-6
MA0051.1	MA0051.1	0.0127
MA0052.1	MA0052.1	0.044
MA0055.1	MA0055.1	0.0469
MA0057.1	MA0057.1	0.862
MA0058.1	MA0058.1	0.661
MA0059.1	MA0059.1	0.716
MA0060.1	MA0060.1	8.41243e-4
MA0061.1	MA0061.1	0.0131
MA0062.2	MA0062.2	1.53221e-5
MA0065.2	MA0065.2	0.138
MA0066.1	MA0066.1	0.209
MA0067.1	MA0067.1	0.756
MA0068.1	MA0068.1	0.544
MA0069.1	MA0069.1	0.692
MA0070.1	MA0070.1	0.0126
MA0071.1	MA0071.1	0.573
MA0072.1	MA0072.1	0.677
MA0073.1	MA0073.1	0.442
MA0074.1	MA0074.1	0.737
MA0076.1	MA0076.1	0.0926
MA0077.1	MA0077.1	0.0658
MA0078.1	MA0078.1	0.911
MA0079.2	MA0079.2	0.895
MA0080.2	MA0080.2	1.85501e-17
MA0081.1	MA0081.1	0.00127
MA0083.1	MA0083.1	0.985
MA0084.1	MA0084.1	0.989
MA0087.1	MA0087.1	0.983
MA0088.1	MA0088.1	0.309
MA0090.1	MA0090.1	0.0189
MA0091.1	MA0091.1	0.33
MA0092.1	MA0092.1	0.803
MA0093.1	MA0093.1	0.466
MA0099.2	MA0099.2	0.491
MA0100.1	MA0100.1	0.992
MA0101.1	MA0101.1	0.409
MA0102.2	MA0102.2	2.83248e-5
MA0103.1	MA0103.1	0.202
MA0104.2	MA0104.2	0.702
MA0105.1	MA0105.1	8.72667e-5
MA0106.1	MA0106.1	0.484
MA0107.1	MA0107.1	0.436
MA0108.2	MA0108.2	5.13483e-5
MA0111.1	MA0111.1	0.265
MA0112.2	MA0112.2	0.00124
MA0113.1	MA0113.1	0.904
MA0114.1	MA0114.1	0.448
MA0115.1	MA0115.1	0.455
MA0116.1	MA0116.1	2.57192e-6
MA0117.1	MA0117.1	0.985
MA0119.1	MA0119.1	0.569
MA0122.1	MA0122.1	0.36
MA0124.1	MA0124.1	0.677
MA0125.1	MA0125.1	0.044
MA0131.1	MA0131.1	0.499
MA0135.1	MA0135.1	0.594
MA0136.1	MA0136.1	2.5891e-25
MA0137.2	MA0137.2	0.033
MA0138.2	MA0138.2	0.849
MA0139.1	MA0139.1	0.184
MA0140.1	MA0140.1	1.99468e-14
MA0141.1	MA0141.1	0.593
MA0142.1	MA0142.1	0.961
MA0143.1	MA0143.1	0.587
MA0144.1	MA0144.1	0.0423
MA0145.1	MA0145.1	0.106
MA0146.1	MA0146.1	0.0065
MA0147.1	MA0147.1	0.652
MA0148.1	MA0148.1	0.531
MA0149.1	MA0149.1	0.383
MA0150.1	MA0150.1	0.00143
MA0152.1	MA0152.1	0.168
MA0153.1	MA0153.1	0.035
MA0154.1	MA0154.1	0.00206
MA0155.1	MA0155.1	0.805
MA0156.1	MA0156.1	1.12258e-18
MA0157.1	MA0157.1	0.00618
MA0159.1	MA0159.1	0.198
MA0160.1	MA0160.1	0.565
MA0162.1	MA0162.1	0.438
MA0163.1	MA0163.1	9.24626e-6
MA0164.1	MA0164.1	0.49
MA0258.1	MA0258.1	0.0267
MA0259.1	MA0259.1	0.35

FANTOM5 phase1 novel unique motifsSummary:Association of the 169 novel and unique motifs discovered in FANTOM5 phase1 in this sample. Among the de-novo motifs discovered by DMF, HOMER,ChIPMunk, and ScanAll, only novel motifs are selected after comparison with known motif sets, and their clustering based on MACRO-APE resulted in169 novel and unique motifs. Their association to the promoter expression is evaluated in the same way to the JASPAR motif above Analyst: Michiel de Hoon link to dataset. data

library id: CNhs11673

Novel motif	Logo	P-value
1	1	0.177
10	10	0.083
100	100	0.511
101	101	0.291
102	102	0.615
103	103	0.14
104	104	0.713
105	105	0.0964
106	106	0.0627
107	107	0.902
108	108	0.79
109	109	0.109
11	11	0.0918
110	110	0.285
111	111	0.258
112	112	0.176
113	113	0.174
114	114	0.0437
115	115	0.144
116	116	0.943
117	117	0.0575
118	118	0.367
119	119	0.547
12	12	0.439
120	120	0.513
121	121	0.899
122	122	0.282
123	123	0.297
124	124	0.0932
125	125	0.148
126	126	0.184
127	127	0.27
128	128	0.0798
129	129	0.58
13	13	0.784
130	130	0.81
131	131	0.686
132	132	0.554
133	133	0.807
134	134	0.811
135	135	0.195
136	136	0.887
137	137	0.00773
138	138	0.051
139	139	0.0119
14	14	0.166
140	140	0.647
141	141	0.475
142	142	0.942
143	143	0.00256
144	144	0.521
145	145	0.421
146	146	0.827
147	147	0.154
148	148	0.261
149	149	0.507
15	15	0.0378
150	150	0.98
151	151	0.286
152	152	0.354
153	153	0.487
154	154	0.931
155	155	0.239
156	156	0.834
157	157	0.343
158	158	0.13
159	159	0.424
16	16	0.464
160	160	0.659
161	161	0.372
162	162	0.535
163	163	0.407
164	164	0.331
165	165	0.0841
166	166	0.836
167	167	0.709
168	168	0.163
169	169	0.0203
17	17	0.412
18	18	0.414
19	19	0.344
2	2	0.204
20	20	0.614
21	21	0.514
22	22	0.165
23	23	0.0621
24	24	0.0567
25	25	0.166
26	26	0.319
27	27	0.0817
28	28	0.408
29	29	0.493
3	3	0.104
30	30	0.976
31	31	0.485
32	32	0.795
33	33	0.565
34	34	0.234
35	35	0.193
36	36	0.448
37	37	0.172
38	38	0.251
39	39	0.902
4	4	0.939
40	40	0.422
41	41	0.0476
42	42	0.218
43	43	0.131
44	44	0.561
45	45	0.442
46	46	0.139
47	47	0.182
48	48	0.258
49	49	0.137
5	5	0.196
50	50	0.888
51	51	0.401
52	52	0.524
53	53	0.158
54	54	0.293
55	55	0.113
56	56	0.24
57	57	0.796
58	58	0.0421
59	59	0.0718
6	6	0.663
60	60	0.0604
61	61	0.231
62	62	0.0104
63	63	0.598
64	64	0.333
65	65	0.136
66	66	0.601
67	67	0.298
68	68	0.51
69	69	0.571
7	7	0.153
70	70	0.0239
71	71	0.111
72	72	0.201
73	73	0.297
74	74	0.504
75	75	0.0985
76	76	0.449
77	77	0.64
78	78	0.315
79	79	0.942
8	8	0.572
80	80	0.00578
81	81	0.342
82	82	0.0251
83	83	0.828
84	84	0.568
85	85	0.164
86	86	0.156
87	87	0.678
88	88	0.581
89	89	0.299
9	9	0.207
90	90	0.0479
91	91	0.265
92	92	0.0748
93	93	0.107
94	94	0.149
95	95	0.517
96	96	0.0876
97	97	0.787
98	98	0.0679
99	99	0.259

de novo motifs identified by HOMER in promoters active in this sampleSummary:The result of HOMER in this sample is shown. Analyst:NA library id: CNhs11673

FANTOM5 (FF) ontology

Direct parent terms

is_a relathionship
EFO:0002091 biological replicate
FF:0000002 in vivo cell sample
FF:0000281 human whole blood sample

Ancestor terms (non development)Summary:Connected ontology terms with is_a, part_of or located_in relationship Analyst: Hideya Kawaji link to source data data

CL: Cell type
0000000 (cell), 0000000 (cell)
0000003 (native cell)

UBERON: Anatomy
0000468 (multi-cellular organism)
0007023 (adult organism)
0000178 (blood)
0000479 (tissue)
0004120 (mesoderm-derived structure)
0000061 (anatomical structure)
0000465 (material anatomical entity)
0000179 (haemolymphatic fluid)
0000463 (organism substance)
0000467 (anatomical system)
0001062 (anatomical entity)
0000480 (anatomical group)
0010317 (germ layer / neural crest derived structure)
0002390 (hematopoietic system)
0004535 (cardiovascular system)
0002193 (hemolymphoid system)
0001009 (circulatory system)

FF: FANTOM5
0000102 (sample by type)
0000210 (human sample)
0000002 (in vivo cell sample)
0000101 (sample by species)
0000001 (sample)
0000998 (adult tissue sample)
0010053 (human blood - adult sample)
0000004 (tissue sample)
0000281 (human whole blood sample)

Ancestor terms (development)Summary:Connected ontology terms with develops_from, derives_from or preceded_by relationship Analyst: Hideya Kawaji link to source data data
NA

@@ Line 1: / Line 1: @@
 {{f5samples
-|DRA_sample_Accession=CAGE@DRS008427!RNA-Seq@DRS012104
+|DRA_sample_Accession=RNA-Seq@SAMD00013681
-|accession_numbers=CAGE;DRX008535;DRR009407;DRZ000832;DRZ002217!RNA-Seq;DRX012357;DRR013805;DRZ003006;NA
+|accession_numbers=CAGE;DRX008535;DRR009407;DRZ000832;DRZ002217;DRZ012182;DRZ013567!RNA-Seq;DRX012357;DRR013805;DRZ003006;
 |ancestors_in_anatomy_facet=UBERON:0000468,UBERON:0007023,UBERON:0000178,UBERON:0000479,UBERON:0004120,UBERON:0000061,UBERON:0000465,UBERON:0000179,UBERON:0000463,UBERON:0000467,UBERON:0001062,UBERON:0000480,UBERON:0010317,UBERON:0002390,UBERON:0004535,UBERON:0002193,UBERON:0001009
 |ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003
@@ Line 9: / Line 9: @@
 |created_by=
 |creation_date=
-|datafreeze_phase=1
+|data_phase=2
+|datafreeze_phase=2
 |def=
 |expression_enrichment_score=chr12:54694653..54694672,-!p2@NFE2!2.76!577.29!NFE2;;chr11:47400078..47400106,-!p1@SPI1!2.62!419.60!SPI1;;chr2:68592406..68592424,+!p1@PLEK!2.60!399.62!PLEK;;chrX:131623026..131623039,-!p5@MBNL3!2.33!214.39!MBNL3;;chrX:131622958..131622978,-!p3@MBNL3!2.32!258.68!MBNL3;;chrX:131623044..131623089,-!p1@MBNL3!2.31!800.33!MBNL3;;chrX:70315688..70315709,+!p1@FOXO4!2.29!439.05!FOXO4;;chr12:54694758..54694805,-!p1@NFE2!2.26!218.71!NFE2;;chrX:131622988..131623006,-!p8@MBNL3!2.26!182.53!MBNL3;;chr10:51572339..51572376,+!p4@NCOA4!2.21!349.40!NCOA4;;chr12:54694807..54694832,-!p3@NFE2!2.15!139.87!NFE2;;chr7:28220506..28220552,-!p3@JAZF1!2.15!139.87!JAZF1;;chr10:51572408..51572454,+!p3@NCOA4!2.10!680.44!NCOA4;;chr19:13213511..13213545,-!p2@LYL1!2.07!125.83!LYL1;;chr7:28220354..28220441,-!p1@JAZF1!1.99!1392.20!JAZF1;;chr10:51585430..51585448,+!p7@NCOA4!1.97!92.89!NCOA4;;chr19:12998003..12998021,-!p1@KLF1!1.93!84.78!KLF1;;chr4:109087445..109087463,-!p1@LEF1!1.91!79.92!LEF1;;chr10:51585449..51585487,+!p6@NCOA4!1.90!77.76!NCOA4;;chr2:70142232..70142251,+!p1@MXD1!1.88!401.78!MXD1;;chr1:43148855..43148908,+!p4@YBX1!1.75!85.32!YBX1;;chr2:148778973..148779035,+!p3@MBD5!1.73!132.85!MBD5;;chr7:50344289..50344323,+!p1@IKZF1!1.73!52.92!IKZF1;;chr3:128212033..128212051,-!p1@GATA2!1.72!51.30!GATA2;;chr1:47697965..47697991,-!p7@TAL1!1.71!50.76!TAL1;;chr10:111985713..111985774,+!p2@MXI1!1.70!440.67!MXI1;;chr16:85932760..85932775,+!p1@IRF8!1.70!48.60!IRF8;;chr17:45810594..45810608,+!p1@TBX21!1.68!46.98!TBX21;;chr3:141748010..141748030,-!p8@TFDP2!1.68!46.98!TFDP2;;chr12:54778471..54778528,-!p1@ZNF385A!1.64!42.66!ZNF385A;;chr11:47400062..47400077,-!p2@SPI1!1.62!40.50!SPI1;;chr7:50343634..50343717,+!p2@IKZF1!1.59!37.80!IKZF1;;chr10:111967345..111967422,+!p1@MXI1!1.58!575.67!MXI1;;chr9:117150254..117150271,-!p1@AKNA!1.57!96.13!AKNA;;chr5:133451294..133451310,+!p2@TCF7!1.56!35.10!TCF7;;chr3:187463179..187463201,-!p2@BCL6!1.55!138.25!BCL6;;chr19:13213662..13213686,-!p1@LYL1!1.54!49.14!LYL1;;chr17:17721569..17721574,-!p9@SREBF1!1.52!32.40!SREBF1;;chrX:48644984..48645005,+!p1@GATA1!1.52!32.40!GATA1;;chr3:27763807..27763822,-!p1@EOMES!1.52!32.40!EOMES;;chr3:63953435..63953499,+!p1@ATXN7!1.50!30.78!ATXN7;;chr19:13213634..13213645,-!p8@LYL1!1.50!30.78!LYL1;;chr11:47399996..47400014,-!p4@SPI1!1.49!29.70!SPI1;;chr2:192015701..192015743,-!p1@STAT4!1.47!38.88!STAT4;;chr1:23857325..23857416,-!p2@E2F2!1.47!33.48!E2F2;;chr20:56195474..56195506,-!p1@ZBP1!1.47!28.62!ZBP1;;chr19:16435625..16435682,+!p1@KLF2!1.45!841.91!KLF2;;chr19:13213555..13213568,-!p5@LYL1!1.45!27.00!LYL1;;chr2:231090471..231090504,+!p2@SP140!1.45!27.00!SP140;;chr2:231090433..231090469,+!p1@SP140!1.44!26.46!SP140;;chr2:68592394..68592405,+!p2@PLEK!1.43!25.92!PLEK;;chr6:391743..391759,+!p1@IRF4!1.43!25.92!IRF4;;chr12:54689552..54689574,-!p6@NFE2!1.42!25.38!NFE2;;chr7:28725740..28725778,+!p1@CREB5!1.41!211.15!CREB5;;chr4:185395633..185395651,-!p2@IRF2!1.41!39.42!IRF2;;chr11:47399947..47399961,-!p3@SPI1!1.41!24.84!SPI1;;chr21:34442439..34442455,+!p1@OLIG1!1.40!24.30!OLIG1;;chr11:47400032..47400043,-!p5@SPI1!1.39!23.76!SPI1;;chr7:28725715..28725727,+!p3@CREB5!1.37!26.46!CREB5;;chr5:176735063..176735088,-!p2@MXD3!1.37!22.68!MXD3;;chr6:144385698..144385742,-!p2@PLAGL1!1.35!25.92!PLAGL1;;chr11:111249993..111250006,-!p1@POU2AF1!1.35!21.60!POU2AF1;;chr11:47400045..47400060,-!p6@SPI1!1.34!21.06!SPI1;;chr2:192015750..192015793,-!p2@STAT4!1.32!26.46!STAT4;;chr19:50922187..50922204,+!p1@SPIB!1.32!19.98!SPIB;;chr10:51565239..51565263,+!p2@NCOA4!1.31!442.29!NCOA4;;chr5:133450365..133450444,+!p1@TCF7!1.30!84.24!TCF7;;chr6:108881012..108881034,+!p3@FOXO3!1.30!67.50!FOXO3;;chr1:25256756..25256774,-!p1@RUNX3!1.30!35.10!RUNX3;;chr1:47695003..47695042,-!p2@TAL1!1.30!18.90!TAL1;;chr12:54694738..54694749,-!p5@NFE2!1.30!18.90!NFE2;;chr11:128563948..128564003,+!p1@FLI1!1.29!215.47!FLI1;;chr12:54691711..54691725,-!p7@NFE2!1.29!18.36!NFE2;;chr2:100759010..100759035,-!p1@AFF3!1.29!18.36!AFF3;;chr1:43148792..43148849,+!p2@YBX1!1.27!66.42!YBX1;;chr1:23857128..23857141,-!p6@E2F2!1.27!17.82!E2F2;;chr17:38497662..38497713,+!p4@RARA!1.26!19.98!RARA;;chr6:106546808..106546833,+!p3@PRDM1!1.24!20.52!PRDM1;;chr3:18486354..18486377,-!p2@SATB1!1.24!20.52!SATB1;;chr5:88178983..88179012,-!p1@MEF2C!1.23!121.51!MEF2C;;chr13:41593425..41593480,-!p1@ELF1!1.23!99.37!ELF1;;chr7:115670804..115670825,-!p1@TFEC!1.22!15.66!TFEC;;chr17:37934365..37934387,-!p2@IKZF3!1.22!15.66!IKZF3;;chr20:50159198..50159299,-!p1@NFATC2!1.20!21.60!NFATC2;;chr2:208031943..208031978,-!p5@KLF7!1.20!19.98!KLF7;;chr4:185395590..185395627,-!p3@IRF2!1.20!18.36!IRF2;;chr7:149470641..149470694,-!p1@ZNF467!1.19!64.80!ZNF467;;chr1:8484007..8484061,-!p13@RERE!1.19!18.36!RERE;;chr12:53835425..53835437,+!p4@PRR13,p5@PCBP2!1.18!23.22!PCBP2;;chr9:32550965..32551031,-!p4@TOPORS!1.18!22.14!TOPORS;;chrX:106960180..106960197,-!p2@TSC22D3!1.17!51.84!TSC22D3;;chr10:8096631..8096660,+!p1@GATA3!1.17!16.74!GATA3;;chrX:131574281..131574293,-!p18@MBNL3!1.16!13.50!MBNL3;;chrX:106960285..106960299,-!p1@TSC22D3!1.15!346.16!TSC22D3;;chr3:71355163..71355209,-!p5@FOXP1!1.15!18.36!FOXP1;;chr5:131826457..131826514,-!p1@IRF1!1.14!501.15!IRF1;;chr1:23857698..23857733,-!p1@E2F2!1.13!22.68!E2F2;;chr2:28618532..28618610,+!p4@FOSL2!1.13!21.60!FOSL2;;chr4:185395191..185395226,-!p4@IRF2!1.13!17.28!IRF2;;chr9:135854091..135854159,+!p1@GFI1B!1.13!12.42!GFI1B;;chrX:107018836..107018862,-!p8@TSC22D3!1.13!12.42!TSC22D3;;chr14:99738059..99738086,-!p2@BCL11B!1.13!12.42!BCL11B;;chr12:10854646..10854658,-!p24@CSDA!1.13!12.42!CSDA;;chr12:54689532..54689551,-!p4@NFE2!1.13!12.42!NFE2;;chr14:75988771..75988826,+!p1@BATF!1.12!16.20!BATF;;chr19:45251395..45251432,+!p8@BCL3!1.11!11.88!BCL3;;chr9:137217986..137218049,+!p3@RXRA!1.10!33.48!RXRA;;chr2:231084659..231084721,-!p1@SP110!1.09!263.00!SP110;;chr2:145277640..145277771,-!p1@ZEB2!1.09!151.21!ZEB2;;chr15:60884706..60884743,-!p1@RORA!1.09!59.40!RORA;;chr9:117160738..117160782,-!p2@AKNA!1.09!46.98!AKNA;;chrX:107019163..107019179,-!p7@TSC22D3!1.09!12.96!TSC22D3;;chr17:38020557..38020572,-!p4@IKZF3!1.09!11.34!IKZF3;;chr2:70142189..70142223,+!p2@MXD1!1.08!79.38!MXD1;;chrX:70316005..70316034,+!p2@FOXO4!1.08!19.98!FOXO4;;chr10:31288398..31288455,-!p2@ZNF438!1.08!12.96!ZNF438;;chr6:108882175..108882186,+!p10@FOXO3!1.07!10.80!FOXO3;;chr7:50343895..50343936,+!p5@IKZF1!1.07!10.80!IKZF1;;chr1:158979872..158979898,+!p3@IFI16!1.06!32.94!IFI16;;chr8:67525443..67525459,-!p2@MYBL1!1.06!15.66!MYBL1;;chrX:107018969..107019024,-!p6@TSC22D3!1.06!14.58!TSC22D3;;chr9:117150303..117150312,-!p3@AKNA!1.05!12.96!AKNA;;chr7:50344251..50344288,+!p3@IKZF1!1.05!10.26!IKZF1;;chr17:38020392..38020477,-!p1@IKZF3!1.05!10.26!IKZF3;;chr4:106068026..106068084,+!p1@TET2!1.04!90.19!TET2;;chr6:15246200..15246214,+!p2@JARID2!1.03!27.54!JARID2;;chr12:10875658..10875708,-!p2@CSDA!1.03!22.68!CSDA;;chr16:88752889..88752921,-!p1@SNAI3!1.03!11.34!SNAI3;;chr4:57522166..57522260,-!p2@HOPX!1.03!11.34!HOPX;;chr12:124812308..124812313,-!p57@NCOR2!1.03!9.72!NCOR2;;chr1:47697881..47697910,-!p4@TAL1!1.03!9.72!TAL1;;chr2:208394817..208394834,+!p3@CREB1!1.02!38.88!CREB1;;chr17:38498594..38498661,+!p2@RARA!1.01!31.32!RARA;;chr7:64126535..64126559,+!p2@ZNF107!1.01!19.98!ZNF107;;chr2:231084639..231084654,-!p2@SP110!1.01!15.66!SP110;;chr19:56879534..56879615,+!p3@ZNF542!1.01!14.58!ZNF542;;chr5:140080022..140080042,+!p1@ZMAT2!1.00!493.59!ZMAT2;;chr2:208031542..208031595,-!p2@KLF7!1.00!64.80!KLF7;;chr19:56146352..56146420,+!p2@ZNF580,p2@ZNF581!1.00!59.94!ZNF580;;chr21:30671211..30671234,+!p3@BACH1!1.00!44.82!BACH1;;chr4:38665769..38665801,+!p2@KLF3!0.99!81.00!KLF3;;chr16:3313791..3313834,+!p2@ZNF263!0.99!19.98!ZNF263;;chr19:13213704..13213726,-!p3@LYL1!0.98!11.34!LYL1;;chr10:111985777..111985788,+!p4@MXI1!0.98!8.64!MXI1;;chr20:56195525..56195556,-!p2@ZBP1!0.98!8.64!ZBP1;;chr8:71316021..71316068,-!p1@NCOA2!0.97!79.92!NCOA2;;chr12:10854595..10854628,-!p7@CSDA!0.97!11.88!CSDA;;chr14:75745523..75745537,+!p1@FOS!0.96!1004.46!FOS;;chr21:30671235..30671253,+!p1@BACH1!0.96!106.39!BACH1;;chr17:38498402..38498445,+!p3@RARA!0.96!30.24!RARA;;chr10:8096772..8096787,+!p2@GATA3!0.96!9.72!GATA3;;chr12:54694686..54694697,-!p8@NFE2!0.96!8.10!NFE2;;chr3:141747950..141748004,-!p7@TFDP2!0.96!8.10!TFDP2;;chr1:23857087..23857100,-!p8@E2F2!0.96!8.10!E2F2;;chr6:15249128..15249177,+!p4@JARID2!0.95!14.58!JARID2;;chr11:128392273..128392308,-!p2@ETS1!0.94!33.48!ETS1;;chr6:108882364..108882391,+!p4@FOXO3!0.93!10.80!FOXO3;;chr1:26697243..26697258,-!p1@ZNF683!0.93!7.56!ZNF683;;chr1:221052776..221052799,+!p1@HLX!0.92!13.50!HLX;;chr6:108880956..108881011,+!p1@FOXO3!0.91!49.68!FOXO3;;chr3:71632840..71632857,-!p10@FOXP1!0.91!14.58!FOXP1;;chr3:18466787..18466839,-!p1@SATB1!0.90!32.40!SATB1;;chr3:187463220..187463232,-!p3@BCL6!0.90!21.60!BCL6;;chr5:133451347..133451358,+!p3@TCF7!0.90!7.02!TCF7;;chr17:37934280..37934299,-!p6@IKZF3!0.90!7.02!IKZF3;;chr12:6782377..6782382,-!p15@ZNF384!0.90!7.02!ZNF384;;chr1:92951607..92951661,-!p1@GFI1!0.90!7.02!GFI1;;chr21:36421347..36421380,-!p8@RUNX1!0.90!7.02!RUNX1;;chr4:140098339..140098392,-!p1@ELF2!0.89!58.32!ELF2;;chr5:88179017..88179046,-!p2@MEF2C!0.89!28.62!MEF2C;;chr21:36421535..36421610,-!p2@RUNX1!0.89!25.38!RUNX1;;chr11:128392085..128392232,-!p1@ETS1!0.88!233.29!ETS1;;chr19:42636586..42636607,-!p1@POU2F2!0.88!18.90!POU2F2;;chr19:47616992..47617011,-!p4@ZC3H4!0.88!14.58!ZC3H4;;chr5:142782823..142782854,-!p3@NR3C1!0.88!9.72!NR3C1;;chr19:45250948..45250998,+!p3@BCL3!0.87!16.74!BCL3;;chr19:12075844..12075880,+!p3@ZNF763!0.87!11.34!ZNF763;;chr17:37934204..37934241,-!p3@IKZF3!0.87!6.48!IKZF3;;chr19:10416315..10416333,-!p1@ZGLP1!0.87!6.48!ZGLP1;;chr6:106546731..106546755,+!p5@PRDM1!0.87!6.48!PRDM1;;chr7:137620650..137620677,-!p3@CREB3L2!0.87!6.48!CREB3L2;;chr3:71542684..71542720,-!p18@FOXP1!0.87!6.48!FOXP1;;chr4:57522513..57522548,-!p4@HOPX!0.87!6.48!HOPX;;chr11:47399920..47399931,-!p7@SPI1!0.87!6.48!SPI1;;chr9:20382446..20382493,-!p4@MLLT3!0.87!6.48!MLLT3;;chr9:88969287..88969297,-!p3@ZCCHC6!0.86!8.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+|fantom_cat=http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000222;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0000178;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0002193;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0002390
 |fonse_cell_line=
 |fonse_cell_line_closure=
@@ Line 39: / Line 41: @@
 |fonse_treatment_closure=
 |has_quality=
+|hg19bam=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/Whole%2520blood%2520%2528ribopure%2529%252c%2520donor090612%252c%2520donation2.CNhs11673.12183-129A5.hg19.nobarcode.bam
+|hg19ctss=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/Whole%2520blood%2520%2528ribopure%2529%252c%2520donor090612%252c%2520donation2.CNhs11673.12183-129A5.hg19.ctss.bed.gz
+|hg19fasta=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/Whole%2520blood%2520%2528ribopure%2529%252c%2520donor090612%252c%2520donation2.CNhs11673.12183-129A5.hg19.nobarcode.rdna.fa.gz
+|hg38bam=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.primary_cell.hCAGE/Whole%2520blood%2520%2528ribopure%2529%252c%2520donor090612%252c%2520donation2.CNhs11673.12183-129A5.hg38.nobarcode.bam
+|hg38ctss=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.primary_cell.hCAGE/Whole%2520blood%2520%2528ribopure%2529%252c%2520donor090612%252c%2520donation2.CNhs11673.12183-129A5.hg38.nobarcode.ctss.bed.gz
 |id=FF:12183-129A5
 |is_a=EFO:0002091;;FF:0000002;;FF:0000281
 |is_obsolete=
 |library_id=CNhs11673!RDhi10004
-|library_ids=CNhs11673!RDhi10004
+|library_id_phase_based=2:CNhs11673
+|microRNAs=
+|microRNAs_nn=
+|microRNAs_nonnovel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer/#/human#cage;sample;12183
+|microRNAs_novel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer_novel/#/human#cage;sample;12183
 |name=Whole blood (ribopure), donor090612, donation2
 |namespace=FANTOM5
@@ Line 49: / Line 60: @@
 |profile_cagescan=,,,
 |profile_hcage=CNhs11673,LSID808,release008,COMPLETED
-|profile_rnaseq=RDhi10004,,,
+|profile_rnaseq=
 |profile_srnaseq=,,,
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+|zenbu_report=https://fantom.gsc.riken.jp/zenbu/reports/#miRNA_expression_atlas_human;search_select_hide=table111:FF:12183-129A5;search_select_hide=table117:FF:12183-129A5
 }}

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FF:12183-129A5: Difference between revisions

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Latest revision as of 18:33, 4 June 2020

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	Mozilla Cavendish skin modified by DaSch for the Web Community Wiki GitHub project page – Report a bug – Skin version: 2.6.0