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{{f5samples
{{f5samples
|DRA_sample_Accession=CAGE@DRS007930
|DRA_sample_Accession=CAGE@SAMD00005302
|accession_numbers=CAGE;DRX008037;DRR008909;DRZ000334;DRZ001719
|accession_numbers=CAGE;DRX008037;DRR008909;DRZ000334;DRZ001719;DRZ011684;DRZ013069
|ancestors_in_anatomy_facet=UBERON:0000468,UBERON:0002097,UBERON:0002199,UBERON:0002384,UBERON:0000479,UBERON:0000062,UBERON:0000061,UBERON:0000465,UBERON:0000467,UBERON:0001062,UBERON:0000480,UBERON:0003102,UBERON:0002416
|ancestors_in_anatomy_facet=UBERON:0000468,UBERON:0002097,UBERON:0002199,UBERON:0002384,UBERON:0000479,UBERON:0000062,UBERON:0000061,UBERON:0000465,UBERON:0000467,UBERON:0001062,UBERON:0000480,UBERON:0003102,UBERON:0002416
|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000548,CL:0002320,CL:0002371,CL:0000255,CL:0000057,CL:0002620
|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000548,CL:0002320,CL:0002371,CL:0000255,CL:0000057,CL:0002620
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|created_by=
|created_by=
|creation_date=
|creation_date=
|datafreeze_phase=1
|data_phase=2
|datafreeze_phase=2
|def=
|def=
|expression_enrichment_score=chr1:197886461..197886558,+!p1@LHX9!2.46!286.75!LHX9;;chr12:54410664..54410684,+!p1@HOXC4,p1@HOXC5,p1@HOXC6!2.06!113.10!HOXC5;;chr10:28034739..28034756,-!p1@MKX!1.92!82.96!MKX;;chr6:134210243..134210257,+!p1@TCF21!1.89!76.00!TCF21;;chr7:19157248..19157268,-!p1@TWIST1!1.74!145.05!TWIST1;;chr9:132427883..132427951,+!p2@PRRX2!1.44!26.79!PRRX2;;chr1:170632285..170632309,+!p1@PRRX1!1.41!27.83!PRRX1;;chr19:45971246..45971265,+!p1@FOSB!1.39!418.92!FOSB;;chr15:57511609..57511651,+!p2@TCF12!1.37!37.10!TCF12;;chr20:50179368..50179392,-!p2@NFATC2!1.36!28.34!NFATC2;;chr6:10415276..10415341,-!p2@TFAP2A!1.35!26.02!TFAP2A;;chrY:21906594..21906622,-!p1@KDM5D!1.34!20.87!KDM5D;;chr7:44143925..44143970,+!p1@AEBP1!1.32!430.52!AEBP1;;chr5:321810..321877,+!p1@AHRR!1.25!52.56!AHRR;;chr7:27224795..27224840,-!p2@HOXA11!1.25!16.75!HOXA11;;chr11:46299199..46299233,+!p1@CREB3L1!1.24!83.48!CREB3L1;;chr5:158526917..158526932,-!p1@EBF1!1.23!39.93!EBF1;;chr7:27192185..27192209,-!p1@HOXA3!1.22!15.46!HOXA3;;chr14:24837368..24837401,+!p1@NFATC4!1.21!35.81!NFATC4;;chr8:60031619..60031676,-!p1@TOX!1.21!32.98!TOX;;chr5:72744594..72744609,-!p1@FOXD1!1.19!65.18!FOXD1;;chr7:44143978..44143989,+!p2@AEBP1!1.19!26.28!AEBP1;;chr12:54410639..54410659,+!p2@HOXC4,p2@HOXC5,p2@HOXC6!1.19!14.43!HOXC5;;chr12:54402745..54402788,+!p1@HOXC8!1.17!13.91!HOXC8;;chr15:37392616..37392638,-!p2@MEIS2!1.16!42.00!MEIS2;;chr11:46299539..46299620,+!p2@CREB3L1!1.16!22.93!CREB3L1;;chr6:19837592..19837621,+!p1@ID4!1.14!78.58!ID4;;chr7:27224842..27224872,-!p1@HOXA11!1.13!12.37!HOXA11;;chr3:147111198..147111225,+!p4@ZIC1!1.12!12.11!ZIC1;;chr15:37392534..37392562,-!p10@MEIS2!1.10!12.62!MEIS2;;chr14:75745523..75745537,+!p1@FOS!1.09!1339.47!FOS;;chr3:157823517..157823562,-!p1@SHOX2!1.09!12.11!SHOX2;;chr2:19558373..19558392,-!p1@OSR1!1.08!30.66!OSR1;;chr1:170632959..170632987,+!p4@PRRX1!1.07!11.85!PRRX1;;chr5:2751762..2751784,-!p1@IRX2!1.07!10.82!IRX2;;chr8:93074803..93074845,-!p1@RUNX1T1!1.07!10.82!RUNX1T1;;chr2:177001290..177001315,+!p1@HOXD3!1.07!10.82!HOXD3;;chr21:36260773..36260804,-!p7@RUNX1!1.04!13.40!RUNX1;;chr4:174451370..174451387,-!p1@HAND2!1.04!10.05!HAND2;;chr6:85474299..85474324,-!p1@TBX18!1.02!17.00!TBX18;;chr10:114710244..114710257,+!p3@TCF7L2!1.01!25.25!TCF7L2;;chr1:170633348..170633399,+!p2@PRRX1!1.01!12.62!PRRX1;;chr3:147111231..147111281,+!p3@ZIC1!1.01!9.28!ZIC1;;chr9:132427972..132428056,+!p1@PRRX2!1.00!11.85!PRRX2;;chrY:2803415..2803468,+!p1@ZFY!1.00!9.02!ZFY;;chr2:239756671..239756732,+!p1@TWIST2!0.99!28.86!TWIST2;;chr8:67525443..67525459,-!p2@MYBL1!0.99!13.14!MYBL1;;chrX:106960180..106960197,-!p2@TSC22D3!0.98!33.24!TSC22D3;;chr8:60031682..60031710,-!p2@TOX!0.98!14.17!TOX;;chr15:37392724..37392757,-!p1@MEIS2!0.97!39.42!MEIS2;;chr7:44143997..44144008,+!p3@AEBP1!0.97!10.82!AEBP1;;chr1:119530493..119530572,-!p1@TBX15!0.97!8.24!TBX15;;chr2:66662281..66662308,+!p1@MEIS1!0.96!28.60!MEIS1;;chr10:119303078..119303169,+!p2@EMX2!0.95!7.99!EMX2;;chr12:53614115..53614154,-!p1@RARG!0.94!42.77!RARG;;chr1:197886665..197886732,+!p3@LHX9!0.94!7.73!LHX9;;chr8:93115445..93115462,-!p7@RUNX1T1!0.94!7.73!RUNX1T1;;chr10:63809013..63809041,+!p3@ARID5B!0.93!43.80!ARID5B;;chr10:63809106..63809127,+!p1@ARID5B!0.92!103.31!ARID5B;;chr15:37392703..37392717,-!p8@MEIS2!0.92!10.56!MEIS2;;chr7:1577111..1577132,+!p4@MAFK!0.92!8.24!MAFK;;chr19:16435625..16435682,+!p1@KLF2!0.91!239.35!KLF2;;chr4:81118647..81118666,+!p1@PRDM8!0.91!9.53!PRDM8;;chr10:28032421..28032494,-!p2@MKX!0.91!7.21!MKX;;chr19:47523058..47523114,+!p1@NPAS1!0.91!7.21!NPAS1;;chr1:197886421..197886432,+!p2@LHX9!0.91!7.21!LHX9;;chr14:61116183..61116208,-!p1@SIX1!0.90!27.83!SIX1;;chr1:200379104..200379128,-!p2@ZNF281!0.90!17.52!ZNF281;;chr20:55204351..55204377,+!p1@TFAP2C!0.90!9.02!TFAP2C;;chr2:172949484..172949522,+!p1@DLX1!0.90!6.96!DLX1;;chr6:144329384..144329405,-!p1@PLAGL1!0.88!80.13!PLAGL1;;chr7:1577076..1577095,+!p5@MAFK!0.87!6.44!MAFK;;chr3:147127142..147127168,+!p1@ZIC1!0.87!6.44!ZIC1;;chr10:28035133..28035148,-!p3@MKX!0.87!6.44!MKX;;chr12:54393880..54393962,+!p1@HOXC9!0.87!6.44!HOXC9;;chr14:62162258..62162269,+!p2@HIF1A!0.86!63.89!HIF1A;;chr15:37390850..37390909,-!p3@MEIS2!0.86!12.88!MEIS2;;chr15:37392593..37392607,-!p13@MEIS2!0.85!7.47!MEIS2;;chr18:22932080..22932170,-!p1@ZNF521!0.84!26.54!ZNF521;;chr4:95128841..95128865,+!p4@SMARCAD1!0.84!12.62!SMARCAD1;;chr5:158527104..158527135,-!p4@EBF1!0.84!5.93!EBF1;;chr8:93074848..93074871,-!p3@RUNX1T1!0.84!5.93!RUNX1T1;;chr1:170632723..170632739,+!p8@PRRX1!0.84!5.93!PRRX1;;chr12:52445218..52445237,+!p1@NR4A1!0.82!77.03!NR4A1;;chr2:200322654..200322707,-!p2@SATB2!0.82!8.50!SATB2;;chr2:102091566..102091581,-!p1@RFX8!0.82!5.67!RFX8;;chr7:27205136..27205164,-!p1@HOXA9!0.82!5.67!HOXA9;;chr10:63661437..63661465,+!p2@ARID5B!0.81!112.33!ARID5B;;chr7:99156011..99156036,+!p7@ZNF655!0.81!6.44!ZNF655;;chr2:176994408..176994492,+!p1@HOXD8!0.81!5.41!HOXD8;;chr1:170633058..170633084,+!p5@PRRX1!0.81!5.41!PRRX1;;chr7:42276787..42276815,-!p1@GLI3!0.80!14.94!GLI3;;chr6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|expression_enrichment_score=chr1:197886461..197886558,+!p1@LHX9!2.46!286.75!LHX9;;chr12:54410664..54410684,+!p1@HOXC4,p1@HOXC5,p1@HOXC6!2.06!113.10!HOXC5;;chr10:28034739..28034756,-!p1@MKX!1.92!82.96!MKX;;chr6:134210243..134210257,+!p1@TCF21!1.89!76.00!TCF21;;chr7:19157248..19157268,-!p1@TWIST1!1.74!145.05!TWIST1;;chr9:132427883..132427951,+!p2@PRRX2!1.44!26.79!PRRX2;;chr1:170632285..170632309,+!p1@PRRX1!1.41!27.83!PRRX1;;chr19:45971246..45971265,+!p1@FOSB!1.39!418.92!FOSB;;chr15:57511609..57511651,+!p2@TCF12!1.37!37.10!TCF12;;chr20:50179368..50179392,-!p2@NFATC2!1.36!28.34!NFATC2;;chr6:10415276..10415341,-!p2@TFAP2A!1.35!26.02!TFAP2A;;chrY:21906594..21906622,-!p1@KDM5D!1.34!20.87!KDM5D;;chr7:44143925..44143970,+!p1@AEBP1!1.32!430.52!AEBP1;;chr5:321810..321877,+!p1@AHRR!1.25!52.56!AHRR;;chr7:27224795..27224840,-!p2@HOXA11!1.25!16.75!HOXA11;;chr11:46299199..46299233,+!p1@CREB3L1!1.24!83.48!CREB3L1;;chr5:158526917..158526932,-!p1@EBF1!1.23!39.93!EBF1;;chr7:27192185..27192209,-!p1@HOXA3!1.22!15.46!HOXA3;;chr14:24837368..24837401,+!p1@NFATC4!1.21!35.81!NFATC4;;chr8:60031619..60031676,-!p1@TOX!1.21!32.98!TOX;;chr5:72744594..72744609,-!p1@FOXD1!1.19!65.18!FOXD1;;chr7:44143978..44143989,+!p2@AEBP1!1.19!26.28!AEBP1;;chr12:54410639..54410659,+!p2@HOXC4,p2@HOXC5,p2@HOXC6!1.19!14.43!HOXC5;;chr12:54402745..54402788,+!p1@HOXC8!1.17!13.91!HOXC8;;chr15:37392616..37392638,-!p2@MEIS2!1.16!42.00!MEIS2;;chr11:46299539..46299620,+!p2@CREB3L1!1.16!22.93!CREB3L1;;chr6:19837592..19837621,+!p1@ID4!1.14!78.58!ID4;;chr7:27224842..27224872,-!p1@HOXA11!1.13!12.37!HOXA11;;chr3:147111198..147111225,+!p4@ZIC1!1.12!12.11!ZIC1;;chr15:37392534..37392562,-!p10@MEIS2!1.10!12.62!MEIS2;;chr14:75745523..75745537,+!p1@FOS!1.09!1339.47!FOS;;chr3:157823517..157823562,-!p1@SHOX2!1.09!12.11!SHOX2;;chr2:19558373..19558392,-!p1@OSR1!1.08!30.66!OSR1;;chr1:170632959..170632987,+!p4@PRRX1!1.07!11.85!PRRX1;;chr5:2751762..2751784,-!p1@IRX2!1.07!10.82!IRX2;;chr8:93074803..93074845,-!p1@RUNX1T1!1.07!10.82!RUNX1T1;;chr2:177001290..177001315,+!p1@HOXD3!1.07!10.82!HOXD3;;chr21:36260773..36260804,-!p7@RUNX1!1.04!13.40!RUNX1;;chr4:174451370..174451387,-!p1@HAND2!1.04!10.05!HAND2;;chr6:85474299..85474324,-!p1@TBX18!1.02!17.00!TBX18;;chr10:114710244..114710257,+!p3@TCF7L2!1.01!25.25!TCF7L2;;chr1:170633348..170633399,+!p2@PRRX1!1.01!12.62!PRRX1;;chr3:147111231..147111281,+!p3@ZIC1!1.01!9.28!ZIC1;;chr9:132427972..132428056,+!p1@PRRX2!1.00!11.85!PRRX2;;chrY:2803415..2803468,+!p1@ZFY!1.00!9.02!ZFY;;chr2:239756671..239756732,+!p1@TWIST2!0.99!28.86!TWIST2;;chr8:67525443..67525459,-!p2@MYBL1!0.99!13.14!MYBL1;;chrX:106960180..106960197,-!p2@TSC22D3!0.98!33.24!TSC22D3;;chr8:60031682..60031710,-!p2@TOX!0.98!14.17!TOX;;chr15:37392724..37392757,-!p1@MEIS2!0.97!39.42!MEIS2;;chr7:44143997..44144008,+!p3@AEBP1!0.97!10.82!AEBP1;;chr1:119530493..119530572,-!p1@TBX15!0.97!8.24!TBX15;;chr2:66662281..66662308,+!p1@MEIS1!0.96!28.60!MEIS1;;chr10:119303078..119303169,+!p2@EMX2!0.95!7.99!EMX2;;chr12:53614115..53614154,-!p1@RARG!0.94!42.77!RARG;;chr1:197886665..197886732,+!p3@LHX9!0.94!7.73!LHX9;;chr8:93115445..93115462,-!p7@RUNX1T1!0.94!7.73!RUNX1T1;;chr10:63809013..63809041,+!p3@ARID5B!0.93!43.80!ARID5B;;chr10:63809106..63809127,+!p1@ARID5B!0.92!103.31!ARID5B;;chr15:37392703..37392717,-!p8@MEIS2!0.92!10.56!MEIS2;;chr7:1577111..1577132,+!p4@MAFK!0.92!8.24!MAFK;;chr19:16435625..16435682,+!p1@KLF2!0.91!239.35!KLF2;;chr4:81118647..81118666,+!p1@PRDM8!0.91!9.53!PRDM8;;chr10:28032421..28032494,-!p2@MKX!0.91!7.21!MKX;;chr19:47523058..47523114,+!p1@NPAS1!0.91!7.21!NPAS1;;chr1:197886421..197886432,+!p2@LHX9!0.91!7.21!LHX9;;chr14:61116183..61116208,-!p1@SIX1!0.90!27.83!SIX1;;chr1:200379104..200379128,-!p2@ZNF281!0.90!17.52!ZNF281;;chr20:55204351..55204377,+!p1@TFAP2C!0.90!9.02!TFAP2C;;chr2:172949484..172949522,+!p1@DLX1!0.90!6.96!DLX1;;chr6:144329384..144329405,-!p1@PLAGL1!0.88!80.13!PLAGL1;;chr7:1577076..1577095,+!p5@MAFK!0.87!6.44!MAFK;;chr3:147127142..147127168,+!p1@ZIC1!0.87!6.44!ZIC1;;chr10:28035133..28035148,-!p3@MKX!0.87!6.44!MKX;;chr12:54393880..54393962,+!p1@HOXC9!0.87!6.44!HOXC9;;chr14:62162258..62162269,+!p2@HIF1A!0.86!63.89!HIF1A;;chr15:37390850..37390909,-!p3@MEIS2!0.86!12.88!MEIS2;;chr15:37392593..37392607,-!p13@MEIS2!0.85!7.47!MEIS2;;chr18:22932080..22932170,-!p1@ZNF521!0.84!26.54!ZNF521;;chr4:95128841..95128865,+!p4@SMARCAD1!0.84!12.62!SMARCAD1;;chr5:158527104..158527135,-!p4@EBF1!0.84!5.93!EBF1;;chr8:93074848..93074871,-!p3@RUNX1T1!0.84!5.93!RUNX1T1;;chr1:170632723..170632739,+!p8@PRRX1!0.84!5.93!PRRX1;;chr12:52445218..52445237,+!p1@NR4A1!0.82!77.03!NR4A1;;chr2:200322654..200322707,-!p2@SATB2!0.82!8.50!SATB2;;chr2:102091566..102091581,-!p1@RFX8!0.82!5.67!RFX8;;chr7:27205136..27205164,-!p1@HOXA9!0.82!5.67!HOXA9;;chr10:63661437..63661465,+!p2@ARID5B!0.81!112.33!ARID5B;;chr7:99156011..99156036,+!p7@ZNF655!0.81!6.44!ZNF655;;chr2:176994408..176994492,+!p1@HOXD8!0.81!5.41!HOXD8;;chr1:170633058..170633084,+!p5@PRRX1!0.81!5.41!PRRX1;;chr7:42276787..42276815,-!p1@GLI3!0.80!14.94!GLI3;;chr6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Line 40: Line 41:
|fonse_treatment_closure=
|fonse_treatment_closure=
|has_quality=
|has_quality=
|hg19bam=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.fractionation.hCAGE/Fibroblast%2520-%2520skin%2520normal%252c%2520donor1%2520%2528nuclear%2520fraction%2529.CNhs12403.14323-155E3.hg19.nobarcode.bam
|hg19ctss=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.fractionation.hCAGE/Fibroblast%2520-%2520skin%2520normal%252c%2520donor1%2520%2528nuclear%2520fraction%2529.CNhs12403.14323-155E3.hg19.ctss.bed.gz
|hg19fasta=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.fractionation.hCAGE/Fibroblast%2520-%2520skin%2520normal%252c%2520donor1%2520%2528nuclear%2520fraction%2529.CNhs12403.14323-155E3.hg19.nobarcode.rdna.fa.gz
|hg38bam=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.fractionation.hCAGE/Fibroblast%2520-%2520skin%2520normal%252c%2520donor1%2520%2528nuclear%2520fraction%2529.CNhs12403.14323-155E3.hg38.nobarcode.bam
|hg38ctss=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.fractionation.hCAGE/Fibroblast%2520-%2520skin%2520normal%252c%2520donor1%2520%2528nuclear%2520fraction%2529.CNhs12403.14323-155E3.hg38.nobarcode.ctss.bed.gz
|id=FF:14323-155E3
|id=FF:14323-155E3
|is_a=EFO:0002091;;FF:0000668
|is_a=EFO:0002091;;FF:0000668
|is_obsolete=
|is_obsolete=
|library_id=CNhs12403
|library_id=CNhs12403
|library_id_phase_based=2:CNhs12403
|microRNAs=
|microRNAs_nn=
|microRNAs_nonnovel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer/#/human#cage;sample;14323
|microRNAs_novel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer_novel/#/human#cage;sample;14323
|name=Fibroblast - skin normal, donor1 (nuclear fraction)
|name=Fibroblast - skin normal, donor1 (nuclear fraction)
|namespace=FANTOM5
|namespace=FANTOM5
Line 49: Line 60:
|profile_cagescan=,,,
|profile_cagescan=,,,
|profile_hcage=CNhs12403,LSID914,release011,COMPLETED
|profile_hcage=CNhs12403,LSID914,release011,COMPLETED
|profile_rnaseq=,,,
|profile_rnaseq=
|profile_srnaseq=,,,
|profile_srnaseq=,,,
|refex=http://refex.dbcls.jp/genelist.php?lang
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Line 63: Line 75:
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|rna_sample_type=total RNA
|rna_sample_type=total RNA
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|sample_age=25 year old
|sample_age=25 year old
Line 88: Line 100:
|top_motifs=ALX4:2.26356298456;NKX3-1:2.21007183549;HIF1A:2.11385417952;NR3C1:2.08524813019;XBP1:1.78914129541;EN1,2:1.73421006159;SRF:1.73061653973;GZF1:1.68905069395;ESR1:1.65681213173;RXRA_VDR{dimer}:1.64686137249;NKX3-2:1.58118801103;TEAD1:1.57990303629;FOXL1:1.51538294664;HBP1_HMGB_SSRP1_UBTF:1.46596241031;ZNF238:1.44512642455;UFEwm:1.43164407323;GATA4:1.42354236806;PRDM1:1.39175439524;HMGA1,2:1.35244756761;HMX1:1.34921360841;MYBL2:1.34554130182;KLF4:1.32933089054;GTF2A1,2:1.30455208687;HSF1,2:1.29353908286;RXR{A,B,G}:1.27607028207;SOX17:1.24973650547;MZF1:1.21258628505;AHR_ARNT_ARNT2:1.13843627357;EBF1:1.07958316697;HOX{A5,B5}:1.06877827186;MAFB:1.03099689116;GFI1B:1.01322719212;ATF6:0.991610458142;MTE{core}:0.99150673975;AIRE:0.978265208792;EVI1:0.975437492384;TOPORS:0.972186287259;NANOG{mouse}:0.967892898817;TP53:0.951846857062;GLI1..3:0.9463881537;GTF2I:0.944420205745;EP300:0.941014812529;MAZ:0.939821449803;TEF:0.938382198837;TAL1_TCF{3,4,12}:0.882659664458;PAX8:0.83964738975;HAND1,2:0.83233313818;SPZ1:0.828057993928;ZNF384:0.825767254333;NFATC1..3:0.785512196209;NKX2-1,4:0.756289222682;TLX1..3_NFIC{dimer}:0.75371235562;RREB1:0.697030157884;ZIC1..3:0.695839078403;NFIX:0.681230938528;NFE2L1:0.669642395213;HLF:0.663396644519;GFI1:0.644444691674;IKZF1:0.637586477164;GCM1,2:0.62928609779;STAT1,3:0.603922249166;ARID5B:0.594456765502;TFAP2{A,C}:0.571795366922;RFX1:0.549483119634;PPARG:0.535356327007;ELK1,4_GABP{A,B1}:0.534981630403;POU3F1..4:0.495291082007;TLX2:0.476703548684;NR1H4:0.470292184256;TBX4,5:0.452006788342;PATZ1:0.432485374914;MEF2{A,B,C,D}:0.413869222303;NFE2L2:0.408645180091;TFAP4:0.40343214868;SMAD1..7,9:0.402906929446;SP1:0.402426697154;ZNF148:0.399076886648;HES1:0.388321057636;PDX1:0.370154615053;FOXD3:0.368464348524;POU1F1:0.365103193051;TFCP2:0.325145999394;ZBTB6:0.320982714858;ATF4:0.301414631143;BPTF:0.285094427151;BACH2:0.283809006818;PRRX1,2:0.279377514198;FOXN1:0.278769580562;NFE2:0.235776529708;CEBPA,B_DDIT3:0.232185356457;NKX2-2,8:0.225958102667;ZNF143:0.220012562364;YY1:0.217703918821;MED-1{core}:0.208738754424;NRF1:0.188703337504;CREB1:0.182655663607;TFDP1:0.171454169469;FOXO1,3,4:0.168842066348;TBP:0.163126852772;HOX{A4,D4}:0.15615012001;XCPE1{core}:0.152290068876;CDC5L:0.146406391441;FOS_FOS{B,L1}_JUN{B,D}:0.141875041895;NR6A1:0.114228276032;PAX2:0.0964528090268;IRF1,2:0.0903120999186;PAX3,7:0.0882677120454;FOX{I1,J2}:0.0853251796542;MYFfamily:0.0577598323931;FOXP1:0.0549887378471;POU5F1:0.0547695530526;TFAP2B:0.0455424084342;ATF5_CREB3:0.0373250625667;EGR1..3:-0.0145263370342;NHLH1,2:-0.0168866048851;FOSL2:-0.0229011528817;ELF1,2,4:-0.0234574105545;HOX{A6,A7,B6,B7}:-0.0252392169528;ZFP161:-0.0269000790492;RUNX1..3:-0.0342404406179;MYB:-0.0442559287272;SOX5:-0.0556583686567;NKX2-3_NKX2-5:-0.065357343456;HIC1:-0.0662745555861;DMAP1_NCOR{1,2}_SMARC:-0.0743824111874;ZBTB16:-0.105497654958;PAX5:-0.106985185573;FOX{D1,D2}:-0.165088909806;ATF2:-0.170161349937;STAT5{A,B}:-0.171193690459;CRX:-0.172400373087;STAT2,4,6:-0.185084828527;RBPJ:-0.1871488568;SOX2:-0.191781294862;DBP:-0.202749547152;ZNF423:-0.214565884632;LEF1_TCF7_TCF7L1,2:-0.219635181035;FOXA2:-0.23344586566;CDX1,2,4:-0.236374171523;ONECUT1,2:-0.252857285017;HNF1A:-0.270863996401;SREBF1,2:-0.278670628326;T:-0.295642612075;SPI1:-0.309999730798;ETS1,2:-0.329812104847;AR:-0.368305844938;E2F1..5:-0.377085652942;bHLH_family:-0.384149446202;PAX4:-0.400804561161;HNF4A_NR2F1,2:-0.401143165021;TGIF1:-0.406514759534;NFKB1_REL_RELA:-0.416600838245;POU6F1:-0.422799555282;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:-0.445065806144;JUN:-0.445721835941;RFX2..5_RFXANK_RFXAP:-0.455922960362;NFY{A,B,C}:-0.507575466765;ADNP_IRX_SIX_ZHX:-0.526759168976;MTF1:-0.534523742978;PAX1,9:-0.538071899797;PITX1..3:-0.542405441767;IRF7:-0.550645730106;REST:-0.561352200627;CUX2:-0.580127235103;LHX3,4:-0.595841564151;FOXM1:-0.61005716202;POU2F1..3:-0.616329034125;SPIB:-0.652895096305;PAX6:-0.734142724944;RXR{A,B,G}_{NR1H2,PPAR}dimers:-0.744456339465;ALX1:-0.791244864968;ZEB1:-0.850216085956;OCT4_SOX2{dimer}:-0.857425204394;HOXA9_MEIS1:-0.880087620114;SOX{8,9,10}:-0.912275295553;RORA:-0.921498382519;FOXP3:-0.931245785525;SNAI1..3:-0.93210696813;NFIL3:-0.955248535599;FOX{F1,F2,J1}:-0.9814995627;MYOD1:-0.992061106423;GATA6:-1.04602356;NANOG:-1.12349336653;IKZF2:-1.13428658984;NKX6-1,2:-1.1471971591;FOXQ1:-1.16361821229;ESRRA:-1.20368108501;LMO2:-1.20807526543;BREu{core}:-1.27933713864;NR5A1,2:-1.2808048738;PBX1:-1.56827192497;VSX1,2:-2.28761262566
|top_motifs=ALX4:2.26356298456;NKX3-1:2.21007183549;HIF1A:2.11385417952;NR3C1:2.08524813019;XBP1:1.78914129541;EN1,2:1.73421006159;SRF:1.73061653973;GZF1:1.68905069395;ESR1:1.65681213173;RXRA_VDR{dimer}:1.64686137249;NKX3-2:1.58118801103;TEAD1:1.57990303629;FOXL1:1.51538294664;HBP1_HMGB_SSRP1_UBTF:1.46596241031;ZNF238:1.44512642455;UFEwm:1.43164407323;GATA4:1.42354236806;PRDM1:1.39175439524;HMGA1,2:1.35244756761;HMX1:1.34921360841;MYBL2:1.34554130182;KLF4:1.32933089054;GTF2A1,2:1.30455208687;HSF1,2:1.29353908286;RXR{A,B,G}:1.27607028207;SOX17:1.24973650547;MZF1:1.21258628505;AHR_ARNT_ARNT2:1.13843627357;EBF1:1.07958316697;HOX{A5,B5}:1.06877827186;MAFB:1.03099689116;GFI1B:1.01322719212;ATF6:0.991610458142;MTE{core}:0.99150673975;AIRE:0.978265208792;EVI1:0.975437492384;TOPORS:0.972186287259;NANOG{mouse}:0.967892898817;TP53:0.951846857062;GLI1..3:0.9463881537;GTF2I:0.944420205745;EP300:0.941014812529;MAZ:0.939821449803;TEF:0.938382198837;TAL1_TCF{3,4,12}:0.882659664458;PAX8:0.83964738975;HAND1,2:0.83233313818;SPZ1:0.828057993928;ZNF384:0.825767254333;NFATC1..3:0.785512196209;NKX2-1,4:0.756289222682;TLX1..3_NFIC{dimer}:0.75371235562;RREB1:0.697030157884;ZIC1..3:0.695839078403;NFIX:0.681230938528;NFE2L1:0.669642395213;HLF:0.663396644519;GFI1:0.644444691674;IKZF1:0.637586477164;GCM1,2:0.62928609779;STAT1,3:0.603922249166;ARID5B:0.594456765502;TFAP2{A,C}:0.571795366922;RFX1:0.549483119634;PPARG:0.535356327007;ELK1,4_GABP{A,B1}:0.534981630403;POU3F1..4:0.495291082007;TLX2:0.476703548684;NR1H4:0.470292184256;TBX4,5:0.452006788342;PATZ1:0.432485374914;MEF2{A,B,C,D}:0.413869222303;NFE2L2:0.408645180091;TFAP4:0.40343214868;SMAD1..7,9:0.402906929446;SP1:0.402426697154;ZNF148:0.399076886648;HES1:0.388321057636;PDX1:0.370154615053;FOXD3:0.368464348524;POU1F1:0.365103193051;TFCP2:0.325145999394;ZBTB6:0.320982714858;ATF4:0.301414631143;BPTF:0.285094427151;BACH2:0.283809006818;PRRX1,2:0.279377514198;FOXN1:0.278769580562;NFE2:0.235776529708;CEBPA,B_DDIT3:0.232185356457;NKX2-2,8:0.225958102667;ZNF143:0.220012562364;YY1:0.217703918821;MED-1{core}:0.208738754424;NRF1:0.188703337504;CREB1:0.182655663607;TFDP1:0.171454169469;FOXO1,3,4:0.168842066348;TBP:0.163126852772;HOX{A4,D4}:0.15615012001;XCPE1{core}:0.152290068876;CDC5L:0.146406391441;FOS_FOS{B,L1}_JUN{B,D}:0.141875041895;NR6A1:0.114228276032;PAX2:0.0964528090268;IRF1,2:0.0903120999186;PAX3,7:0.0882677120454;FOX{I1,J2}:0.0853251796542;MYFfamily:0.0577598323931;FOXP1:0.0549887378471;POU5F1:0.0547695530526;TFAP2B:0.0455424084342;ATF5_CREB3:0.0373250625667;EGR1..3:-0.0145263370342;NHLH1,2:-0.0168866048851;FOSL2:-0.0229011528817;ELF1,2,4:-0.0234574105545;HOX{A6,A7,B6,B7}:-0.0252392169528;ZFP161:-0.0269000790492;RUNX1..3:-0.0342404406179;MYB:-0.0442559287272;SOX5:-0.0556583686567;NKX2-3_NKX2-5:-0.065357343456;HIC1:-0.0662745555861;DMAP1_NCOR{1,2}_SMARC:-0.0743824111874;ZBTB16:-0.105497654958;PAX5:-0.106985185573;FOX{D1,D2}:-0.165088909806;ATF2:-0.170161349937;STAT5{A,B}:-0.171193690459;CRX:-0.172400373087;STAT2,4,6:-0.185084828527;RBPJ:-0.1871488568;SOX2:-0.191781294862;DBP:-0.202749547152;ZNF423:-0.214565884632;LEF1_TCF7_TCF7L1,2:-0.219635181035;FOXA2:-0.23344586566;CDX1,2,4:-0.236374171523;ONECUT1,2:-0.252857285017;HNF1A:-0.270863996401;SREBF1,2:-0.278670628326;T:-0.295642612075;SPI1:-0.309999730798;ETS1,2:-0.329812104847;AR:-0.368305844938;E2F1..5:-0.377085652942;bHLH_family:-0.384149446202;PAX4:-0.400804561161;HNF4A_NR2F1,2:-0.401143165021;TGIF1:-0.406514759534;NFKB1_REL_RELA:-0.416600838245;POU6F1:-0.422799555282;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:-0.445065806144;JUN:-0.445721835941;RFX2..5_RFXANK_RFXAP:-0.455922960362;NFY{A,B,C}:-0.507575466765;ADNP_IRX_SIX_ZHX:-0.526759168976;MTF1:-0.534523742978;PAX1,9:-0.538071899797;PITX1..3:-0.542405441767;IRF7:-0.550645730106;REST:-0.561352200627;CUX2:-0.580127235103;LHX3,4:-0.595841564151;FOXM1:-0.61005716202;POU2F1..3:-0.616329034125;SPIB:-0.652895096305;PAX6:-0.734142724944;RXR{A,B,G}_{NR1H2,PPAR}dimers:-0.744456339465;ALX1:-0.791244864968;ZEB1:-0.850216085956;OCT4_SOX2{dimer}:-0.857425204394;HOXA9_MEIS1:-0.880087620114;SOX{8,9,10}:-0.912275295553;RORA:-0.921498382519;FOXP3:-0.931245785525;SNAI1..3:-0.93210696813;NFIL3:-0.955248535599;FOX{F1,F2,J1}:-0.9814995627;MYOD1:-0.992061106423;GATA6:-1.04602356;NANOG:-1.12349336653;IKZF2:-1.13428658984;NKX6-1,2:-1.1471971591;FOXQ1:-1.16361821229;ESRRA:-1.20368108501;LMO2:-1.20807526543;BREu{core}:-1.27933713864;NR5A1,2:-1.2808048738;PBX1:-1.56827192497;VSX1,2:-2.28761262566
|xref=
|xref=
|zenbu_report=https://fantom.gsc.riken.jp/zenbu/reports/#miRNA_expression_atlas_human;search_select_hide=table111:FF:14323-155E3;search_select_hide=table117:FF:14323-155E3
}}
}}

Latest revision as of 19:06, 4 June 2020

Name:Fibroblast - skin normal, donor1 (nuclear fraction)
Species:Human (Homo sapiens)
Library ID:CNhs12403
Sample type:fractionations and perturbations
Genomic View: UCSC
RefEX:Specific genes
CAGEd-oPOSSUM:link
ZENBU report :link
Additional information
Sample information
strainNA
tissueskin
dev stageNA
sexM
age25 year old
cell typefibroblast
cell lineNA
companyCoriell
collaborationFANTOM5 OSC CORE (contact: Al Forrest)
External link for information[{{{sample_info_link}}} {{{sample_info_link}}}]
RNA information
lot numberNA
catalog numbercustom
sample typetotal RNA
extraction protocol (Details)OP-RNA-extraction-totalRNA-TRIzol-ethanol-v1.0

CAGE Accession numbers
MethodSample accession id
CAGE  SAMD00005302
Library accession numbers

Library idMethodExp. accession idRun accession id
CNhs12403 CAGE DRX008037 DRR008909
Accession ID Hg19

Library idBAMCTSS
CNhs12403 DRZ000334 DRZ001719
Accession ID Hg38

Library idBAMCTSS
CNhs12403 DRZ011684 DRZ013069
Download raw sequence, BAM & CTSS
Hg19
FastaBAMCTSS
downloaddownloaddonwload
Hg38
BAMCTSS
downloaddonwload


Relative expression to median (log10)

Transcription factors with enriched expression in this sampleRanked list of transcription factor promoter expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.



Co-expression clusters with enriched expression in this sampleRanked list of co-expression cluster expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed. <br>Analyst:NA <br><br>link to dataset.<br>data

Coexpression clusterscore
C0-CD14-Eosinophils-Neutrophils-Basophils-CD34-immature-Peripheral0
C1-testis-epididymis-embryonic-medulla-pituitary-trachea-caudate0
C10-occipital-temporal-parietal-brain-duodenum-Neurons-Neural0
C100-rhabdomyosarcoma-gastric-pineal-Wilms-cervical-mesodermal-endometrial0
C101-small-cerebellum-maxillary-colon-parietal-epididymis-merkel0
C102-neuroblastoma-testicular-pituitary-carcinosarcoma-rectum-acantholytic-iPS0
C103-CD4-CD8-Natural-Peripheral-Whole-Neutrophils-Basophils0
C104-Mast-Basophils-immature-CD14-CD34-eye-Natural0
C105-heart-skeletal-occipital-hippocampus-acute-Sebocyte-penis-0.109
C106-Hep2-epitheloid-placenta-cervical-rectal-anaplastic-glassy0
C107-Neutrophils-CD14-Eosinophils-Monocytederived-Whole-Peripheral-blood0
C108-breast-hepatoblastoma-MCF7-parotid-salivary-submaxillary-prostate0
C109-Reticulocytes-non-acute-Hodgkin-Burkitt-retinoblastoma-lymphoma-0.0176
C11-cerebellum-medulla-pons-parietal-occipital-middle-medial0
C110-leukemia-chronic-Eosinophils-acute-Whole-CD34-Lymphatic0
C111-medulla-lung-trachea-testis-caudate-epididymis-throat0
C112-gastric-pancreas-temporal-duodenum-small-extraskeletal-adrenal0
C113-thyroid-throat-lung-lymph-small-colon-trachea0
C114-teratocarcinoma-medulloblastoma-carcinosarcoma-iPS-anaplastic-acute-neuroblastoma0
C115-pituitary-Neural-caudate-putamen-amygdala-medulla-hippocampus0
C116-myeloma-xeroderma-tonsil-CD19-spleen-lymph-trachea0
C117-serous-clear-kidney-neuroectodermal-mesothelioma-endometrial-Intestinal0
C118-cerebellum-parietal-occipital-medial-middle-frontal-insula0
C119-CD4-CD8-Natural-Neutrophils-CD14-Peripheral-CD190
C12-Mast-Basophils-immature-chorionic-mature-CD14-Eosinophils0
C120-immature-salivary-tongue-skin-cervical-CD14-CD340
C121-NK-Natural-CD8-CD4-anaplastic-chronic-B0
C122-chronic-Reticulocytes-skeletal-leukemia-acute-colon-Tracheal0
C123-CD19-Natural-CD8-CD4-CD14-Peripheral-Basophils0
C124-small-temporal-duodenum-colon-gall-signet-Hepatocyte0
C125-mucinous-alveolar-mesothelioma-Smooth-lung-CD14-Nucleus0
C126-gastrointestinal-argyrophil-smallcell-merkel-bile-insula-brain0
C127-maxillary-small-hepatoblastoma-hepatocellular-alveolar-colon-argyrophil0
C128-testicular-choriocarcinoma-H9-teratocarcinoma-pancreatic-iPS-HES3GFP0
C129-liver-Hepatocyte-colon-duodenum-temporal-testicular-small0
C13-Neutrophils-Eosinophils-CD14-Monocytederived-Whole-Peripheral-CD40
C130-iPS-HES3GFP-H9-teratocarcinoma-testicular-colon-Alveolar0
C131-lung-trachea-Alveolar-thyroid-umbilical-throat-skin0
C132-acute-small-Dendritic-Macrophage-CD14-Neutrophils-Monocytederived0
C133-signet-gall-small-kidney-colon-ductal-adenocarcinoma0
C134-skeletal-diaphragm-tongue-throat-Skeletal-skin-penis0
C135-neuroblastoma-retinoblastoma-carcinoid-choriocarcinoma-testicular-acute-rectum0
C136-Wilms-extraskeletal-anaplastic-rhabdomyosarcoma-cholangiocellular-nonsmall-neuroectodermal0
C137-large-ductal-melanoma-cervical-Endothelial-Smooth-chronic0
C138-diffuse-Burkitt-lymphangiectasia-lymphoma-acute-CD19-pineal0
C139-astrocytoma-skin-salivary-gall-serous-Mallassezderived-renal0
C14-Whole-blood-Reticulocytes-liver-Neutrophils-Eosinophils-spleen0
C140-Renal-Endothelial-Hepatic-Lymphatic-heart-lung-spleen0
C141-Hodgkin-acute-thymus-chronic-vein-CD4-B0
C142-Preadipocyte-Fibroblast-hepatic-Ewing-Adipocyte-Olfactory-Hair0.872
C143-Monocytederived-CD14-Macrophage-Dendritic-Basophils-CD14CD16-Osteoblast0
C144-CD4-tonsil-NK-appendix-CD8-splenic-mycosis0
C145-neuroblastoma-peripheral-neuroectodermal-neuroepithelioma-carcinoid-adult-extraskeletal0
C146-lymphangiectasia-lymphoma-gall-lymph-tonsil-gastric-transitionalcell0
C147-Neutrophils-Eosinophils-CD4-CD14-CD8-Natural-Peripheral0
C148-kidney-small-epididymis-pancreas-serous-duodenum-temporal0
C149-occipital-medial-brain-amygdala-parietal-cerebral-cerebellum0
C15-anaplastic-small-skeletal-neuroblastoma-parietal-temporal-tongue0
C150-merkel-carcinoid-nonsmall-gastrointestinal-argyrophil-pineal-small0
C151-CD14-Natural-Basophils-CD8-Eosinophils-CD4-Mast0
C152-peripheral-neuroectodermal-neuroepithelioma-neuroblastoma-testicular-carcinoid-lung0
C153-rhabdomyosarcoma-liposarcoma-pancreatic-somatostatinoma-Reticulocytes-lymphoma-testicular0
C154-adenocarcinoma-Mesenchymal-Cardiac-small-sacrococcigeal-Smooth-Prostate0
C155-pituitary-placenta-nonsmall-cervical-smallcell-choriocarcinoma-epitheloid0
C156-plasma-splenic-hereditary-B-large-xeroderma-b0
C157-testicular-H9-testis-iPS-teratocarcinoma-colon-trachea0
C158-adrenal-gastric-temporal-parietal-duodenum-caudate-putamen0
C159-choriocarcinoma-pancreatic-placenta-chorionic-testicular-bronchioalveolar-seminal0
C16-medial-amygdala-occipital-parietal-olfactory-putamen-brain0
C160-medulla-Hepatocyte-retina-corpus-liver-pineal-cerebral0
C161-mesothelioma-Mesothelial-acute-mesenchymal-extraskeletal-renal-placenta0
C162-spinal-locus-medulla-substantia-thalamus-globus-diencephalon0
C163-Skeletal-skeletal-Pericytes-Hepatic-rhabdomyosarcoma-throat-mesenchymal0
C164-signet-corpus-optic-mucinous-substantia-salivary-choriocarcinoma0
C165-epithelioid-Adipocyte-mesothelioma-myxofibrosarcoma-lung-gastric-Mesothelial0
C166-Macrophage-Monocytederived-Dendritic-adipose-lymph-CD14-lung0
C167-Basophils-Mast-Eosinophils-Neutrophils-Peripheral-Whole-CD40
C168-Mast-CD14-immature-Basophils-Eosinophils-CD34-Peripheral0
C169-hereditary-adult-gall-lymphangiectasia-chronic-b-choriocarcinoma0
C17-Mast-CD14-Monocytederived-Lymphatic-Smooth-mesenchymal-Macrophage0
C170-epitheloid-cervical-Hep2-keratoacanthoma-adult-neuroblastoma-signet0
C171-merkel-neuroblastoma-pineal-retinoblastoma-carcinoid-small-eye0
C172-chorionic-skeletal-tongue-amniotic-liver-gastrointestinal-Pericytes0
C173-Adipocyte-mature-skin-left-Hepatocyte-Osteoblast-adipose0
C174-CD14-Neutrophils-Smooth-mesothelioma-embryonic-Monocytederived-Eosinophils0
C175-Eosinophils-Neutrophils-CD4-Basophils-CD19-CD8-Natural0
C176-Eosinophils-Neutrophils-Mast-CD14-CD4-Basophils-CD190.156
C177-melanoma-Melanocyte-mesenchymal-retina-Mallassezderived-Gingival-squamous0
C178-spleen-liver-Hepatocyte-b-lymph-vein-thymus0
C179-CD19-Peripheral-lymphoma-blood-lymph-spleen-tonsil0
C18-CD4-CD8-thymus-Whole-Peripheral-Natural-blood0
C180-skeletal-heart-Hepatocyte-acute-occipital-hippocampus-middle-0.949
C181-liposarcoma-somatostatinoma-neuroblastoma-mesothelioma-nonsmall-small-Alveolar0
C182-renal-mature-mesothelioma-lung-Mammary-Adipocyte-acute0
C183-acute-non-CD34-diffuse-CD133-myeloma-Burkitt0
C184-somatostatinoma-smallcell-nonsmall-small-gastrointestinal-pineal-thyroid0
C185-small-adrenal-gastric-Mesenchymal-acute-HES3GFP-testis0
C186-squamous-papillotubular-large-Tracheal-oral-Small-epidermoid0
C187-migratory-immature-Dendritic-CD19-CD14-Monocytederived-Macrophage0
C188-left-heart-tongue-skeletal-Skeletal-diaphragm-throat0
C189-b-splenic-tonsil-CD19-lymph-appendix-spleen0
C19-embryonic-testis-cord-chronic-CD14-NK-mesothelioma0
C190-colon-small-rectum-duodenum-appendix-temporal-oral0
C191-leiomyoblastoma-Mast-parietal-acute-bone-neuroepithelioma-embryonic0
C192-Neutrophils-CD14-Peripheral-Eosinophils-CD8-Natural-CD40
C193-Mesenchymal-Adipocyte-mature-Cardiac-heart-CD14CD16-CD140
C194-MCF7-breast-prostate-Intestinal-diffuse-Wilms-Alveolar0
C195-Small-Gingival-Bronchial-Smooth-mesenchymal-Urothelial-Tracheal0
C196-testicular-iPS-H9-teratocarcinoma-HES3GFP-choriocarcinoma-endometrial0
C197-tongue-esophagus-tonsil-salivary-cervix-nasal-Gingival0
C198-Mesenchymal-Hair-Hepatic-Fibroblast-Smooth-tenocyte-Pericytes0.521
C199-glioblastoma-B-osteosarcoma-Fibroblast-heart-rhabdomyosarcoma-myxofibrosarcoma0
C2-Eosinophils-Neutrophils-CD14-Whole-Basophils-Peripheral-Mast0
C20-heart-left-skeletal-diaphragm-tongue-umbilical-throat0
C200-seminal-Cardiac-Smooth-Hair-submaxillary-Neutrophils-mixed-0.16
C201-colon-small-adenocarcinoma-duodenum-temporal-signet-gall0
C202-salivary-skin-penis-tongue-uterus-cervical-immature0
C203-acute-NK-chronic-CD133-lymphoma-immature-Dendritic0
C204-Smooth-nasal-CD4-CD19-CD8-CD14-CD340
C205-mycosis-cord-hairy-xeroderma-CD4-B-b0
C206-melanoma-somatostatinoma-nonsmall-small-neuroblastoma-smallcell-pituitary0
C207-Corneal-Keratinocyte-Esophageal-Mammary-Bronchial-Urothelial-Sebocyte0
C208-skin-amniotic-papillotubular-salivary-umbilical-Alveolar-serous0
C209-acute-myelodysplastic-CD34-granulocyte-CD133-liver-spleen0
C21-cord-mycosis-hairy-xeroderma-adult-CD4-anaplastic0
C210-Burkitt-lymphoma-appendix-acute-diffuse-CD19-tonsil0
C211-small-Hepatocyte-liver-colon-temporal-duodenum-kidney0
C212-chronic-acute-Whole-Reticulocytes-leukemia-blood-CD340
C213-CD14-Natural-CD8-CD4-Basophils-Eosinophils-Peripheral0
C214-Neurons-Neural-duodenum-temporal-occipital-parietal-brain0
C215-chronic-acute-peripheral-Hepatocyte-osteosarcoma-NK-immature0
C216-osteosarcoma-Smooth-Mesenchymal-large-neuroectodermal-acute-CD340
C217-carcinoid-neuroectodermal-mature-mesodermal-colon-acute-occipital0
C218-tonsil-lymph-CD19-spleen-colon-appendix-salivary0
C219-nasal-Basophils-amniotic-Melanocyte-CD14-Osteoblast-duodenum0
C22-CD4-CD8-Natural-Basophils-CD14-Peripheral-CD190
C220-Adipocyte-mature-left-breast-skin-liver-adipose0
C221-alveolar-Osteoblast-Myoblast-mesenchymal-liposarcoma-Smooth-hepatocellular0
C222-Melanocyte-Tracheal-Neutrophils-seminal-Smooth-Hair-Chondrocyte-0.0908
C223-Chondrocyte-basal-renal-Fibroblast-Smooth-spindle-Synoviocyte0.448
C224-clear-serous-pleomorphic-choriocarcinoma-mesothelioma-amniotic-renal0
C225-ductal-alveolar-giant-prostate-salivary-squamous-Tracheal0
C226-Corneal-Keratinocyte-Esophageal-Urothelial-Mammary-Bronchial-Tracheal0
C227-chorionic-amniotic-Mesenchymal-Placental-gastric-diaphragm-tongue0
C228-colon-Intestinal-Prostate-hepatoblastoma-hepatocellular-testis-adult0
C229-Mesenchymal-CD4-Melanocyte-acute-skeletal-left-heart0.0996
C23-CD4-CD8-Natural-Peripheral-Basophils-CD19-CD140
C230-aorta-normal-heart-penis-osteosarcoma-basal-lung0
C231-Mesothelial-mesenchymal-mesothelioma-Fibroblast-Preadipocyte-leiomyoma-mycosis0
C232-teratocarcinoma-HES3GFP-H9-iPS-testicular-neuroblastoma-cerebellum0
C233-uterus-cervix-ovary-epididymis-colon-rectum-MCF70
C234-oral-epidermoid-malignant-cervical-ductal-lung-keratoacanthoma0
C235-Intestinal-Prostate-liver-colon-small-kidney-pancreas0
C236-CD14-Neutrophils-Monocytederived-renal-Eosinophils-testis-mesothelioma0
C237-acute-breast-testicular-hepatoblastoma-chronic-argyrophil-Bronchial0
C238-stomach-gall-breast-duodenum-temporal-MCF7-smallcell0
C239-CD4-lymphangiectasia-CD8-NK-mycosis-Renal-hairy0
C24-pineal-eye-retina-retinoblastoma-medulloblastoma-small-cerebral0
C240-Adipocyte-Preadipocyte-Osteoblast-Chondrocyte-tenocyte-Synoviocyte-mesenchymal0.18
C241-Reticulocytes-chronic-Tracheal-Hodgkin-Endothelial-Hair-thymus-0.453
C242-acute-Chondrocyte-myelodysplastic-granulocyte-biphenotypic-Fibroblast-stomach0
C243-Chondrocyte-trachea-Synoviocyte-mesodermal-renal-Fibroblast-Ewing0
C244-CD14-Monocytederived-Hepatocyte-heart-Neutrophils-acute-Macrophage0
C245-prostate-penis-salivary-esophagus-kidney-Neutrophils-Pancreatic0
C246-Neutrophils-Eosinophils-Whole-CD14-CD14CD16-Basophils-migratory0
C247-pons-locus-medulla-spinal-paracentral-medial-occipital0
C248-iPS-Aortic-Hep2-amygdala-acute-medial-Myoblast0
C249-nonsmall-small-smallcell-occipital-somatostatinoma-maxillary-medial0
C25-small-colon-temporal-duodenum-liver-Hepatocyte-gall0
C250-Mast-Neutrophils-CD14-Eosinophils-CD8-Peripheral-CD40.0996
C251-gall-tonsil-trachea-CD14-salivary-throat-tongue0
C252-hepatic-Olfactory-sacrococcigeal-leiomyoma-normal-Synoviocyte-glioblastoma0.14
C253-spleen-rhabdomyosarcoma-Hepatocyte-small-uterus-liver-rectum0
C254-prostate-rhabdomyosarcoma-seminal-Fibroblast-transitionalcell-Smooth-Iris0
C255-Wilms-leiomyoblastoma-kidney-adrenal-MCF7-epithelioid-Mast0
C256-occipital-caudate-amygdala-medial-thalamus-hippocampus-medulla0
C257-pineal-insula-frontal-occipital-temporal-medial-paracentral0
C258-hepatoblastoma-hepatocellular-signet-colon-Intestinal-Prostate-gastric0
C259-Preadipocyte-Adipocyte-Fibroblast-Chondrocyte-tenocyte-normal-Ewing0.77
C26-Eosinophils-Neutrophils-CD14-CD14CD16-Basophils-Monocytederived-Whole0
C260-acute-chronic-Natural-NK-Basophils-biphenotypic-blood0
C261-locus-medial-parietal-pons-diencephalon-olfactory-spinal0
C262-breast-MCF7-skeletal-Reticulocytes-mucinous-hepatoblastoma-Wilms0
C263-cervical-keratoacanthoma-tongue-skin-esophagus-throat-tonsil0
C264-giant-keratoacanthoma-colon-fibrosarcoma-HES3GFP-Hep2-acute0
C265-CD4-Eosinophils-CD14-Natural-CD19-Basophils-CD80.0415
C266-acute-chronic-leukemia-small-choriocarcinoma-hepatoma-Mast0
C267-pancreatic-placenta-choriocarcinoma-testicular-teratocarcinoma-chorionic-clear0
C268-Mallassezderived-Urothelial-Gingival-Small-Bronchial-Tracheal-Prostate0
C269-Basophils-Mast-Eosinophils-mature-CD14-chorionic-CD40.0791
C27-pancreas-temporal-duodenum-salivary-ductus-umbilical-lung0
C270-CD4-Fibroblast-acute-iPS-Aortic-CD34-Smooth-0.0784
C271-pineal-spinal-locus-globus-medulla-thalamus-cerebellum0
C272-CD19-CD4-CD8-Whole-Peripheral-lymph-tonsil0
C273-Neutrophils-CD14-Eosinophils-Monocytederived-CD4-Natural-Mast0.0996
C274-CD14-Mast-immature-Basophils-mature-vagina-Hepatocyte0
C275-pons-medulla-cerebellum-locus-thalamus-diencephalon-spinal0
C276-mesothelioma-kidney-renal-small-clear-cerebellum-Renal0
C277-mesothelioma-epithelioid-thyroid-extraskeletal-alveolar-glioblastoma-adenocarcinoma0
C278-amygdala-hippocampus-insula-medial-putamen-temporal-olfactory0
C279-parietal-cerebellum-occipital-temporal-middle-duodenum-medial0
C28-thymus-acute-vein-Hodgkin-chronic-throat-Dendritic0
C280-Mast-Natural-CD19-CD8-Eosinophils-CD34-CD40.13
C281-Hodgkin-Reticulocytes-chronic-NK-acute-retinoblastoma-small-0.127
C282-acute-B-tonsil-CD19-submaxillary-lymph-throat0
C283-tenocyte-Chondrocyte-mesenchymal-Macrophage-pleomorphic-Synoviocyte-cholangiocellular0
C284-parietal-occipital-medial-temporal-olfactory-locus-hippocampus0.18
C285-cervical-Hep2-small-colon-temporal-duodenum-bronchogenic0
C286-cerebellum-occipital-optic-parietal-globus-caudate-medial0
C287-Hepatocyte-Chondrocyte-Adipocyte-Synoviocyte-liver-tenocyte-mesenchymal0
C288-Chondrocyte-Renal-Pericytes-Fibroblast-aorta-Smooth-Meningeal0.486
C289-chorionic-skeletal-heart-Mast-amniotic-granulosa-left0
C29-mature-adipose-Adipocyte-breast-Lymphatic-vein-heart0
C290-Eosinophils-CD14-Basophils-Mast-CD4-CD8-immature0
C291-spinal-substantia-retina-medulla-tongue-skeletal-trachea0
C292-Mesenchymal-skin-umbilical-Adipocyte-mesenchymal-Chondrocyte-skeletal0.359
C293-CD14-CD14CD16-Basophils-Peripheral-immature-Eosinophils-CD340
C294-CD14-Macrophage-Monocytederived-CD14CD16-Neutrophils-Basophils-Peripheral0
C295-Fibroblast-Smooth-Myoblast-Chondrocyte-hepatic-Synoviocyte-Preadipocyte1.02
C296-gall-small-mesothelioma-acute-bronchioalveolar-epidermoid-mixed0
C297-Eosinophils-CD4-Basophils-Natural-Neutrophils-CD8-Peripheral0
C298-small-optic-substantia-thalamus-diencephalon-globus-occipital0
C299-CD14CD16-Eosinophils-Neutrophils-CD14-Whole-Basophils-blood0
C3-occipital-temporal-insula-medial-postcentral-frontal-amygdala0
C30-thyroid-throat-mesothelioma-mucinous-trachea-chorionic-mesenchymal0
C300-CD4-CD8-NK-Natural-blood-mycosis-Basophils0
C301-Smooth-mesenchymal-Endothelial-Hepatic-basal-hepatic-chorionic0.308
C302-acute-peripheral-Neutrophils-NK-myelodysplastic-CD34-carcinoid0
C303-CD14-Basophils-Peripheral-Eosinophils-CD14CD16-Neutrophils-Whole0
C305-heart-skeletal-smooth-left-bladder-penis-esophagus0
C31-skeletal-tongue-diaphragm-throat-penis-skin-trachea0
C32-middle-occipital-parietal-hippocampus-amygdala-medial-olfactory0
C33-Reticulocytes-liver-Whole-blood-chronic-acute-spleen0
C34-placenta-chorionic-choriocarcinoma-mesothelioma-Wilms-Smooth-bile0
C35-caudate-putamen-diencephalon-nucleus-globus-thalamus-insula0
C36-B-b-splenic-plasma-xeroderma-adrenal-Burkitt0
C37-salivary-submaxillary-parotid-seminal-tongue-ductus-trachea0
C38-extraskeletal-rhabdomyosarcoma-adrenal-rectal-mesothelioma-lung-Wilms0
C39-epididymis-ductus-seminal-testis-acute-thyroid-CD1330
C4-optic-corpus-substantia-medulla-spinal-thalamus-globus0
C40-eye-retina-Lens-pineal-tongue-retinoblastoma-small0
C41-retina-eye-medulla-Retinal-medulloblastoma-kidney-pineal0
C42-small-lung-maxillary-pharyngeal-Mesenchymal-Wilms-colon0
C43-ductus-seminal-duodenum-temporal-gall-prostate-bladder0
C44-Dendritic-CD19-CD133-granulocyte-acute-thymus-immature0
C45-testicular-choriocarcinoma-H9-teratocarcinoma-Wilms-pancreatic-iPS0
C46-acute-Hodgkin-thymus-CD8-chronic-CD4-merkel0
C47-CD19-Burkitt-acute-xeroderma-tonsil-lymphoma-appendix0
C48-smooth-bladder-esophagus-colon-penis-aorta-uterus0
C49-H9-iPS-testicular-HES3GFP-teratocarcinoma-hepatoblastoma-choriocarcinoma0
C5-Hepatocyte-liver-hepatocellular-Intestinal-kidney-small-pancreas0
C50-chorionic-placenta-amniotic-migratory-smallcell-chronic-choriocarcinoma0
C51-kidney-mesothelioma-renal-signet-gall-lung-pancreas0
C52-adult-NK-chronic-cord-testis-embryonic-myeloma0
C53-medulloblastoma-pineal-retinoblastoma-small-retina-eye-pituitary0
C54-Dendritic-Macrophage-Monocytederived-CD14-leiomyoma-adipose-immature0
C55-hepatocellular-Intestinal-liver-Prostate-fibrosarcoma-Hepatocyte-hepatoblastoma0
C56-heart-left-umbilical-skeletal-penis-diaphragm-tongue0
C57-Neutrophils-Eosinophils-Whole-CD4-CD8-CD19-Natural0
C58-Melanocyte-melanoma-retina-Retinal-eye-migratory-H90
C59-Smooth-Fibroblast-Mesenchymal-tenocyte-Ewing-skin-hepatic0.77
C6-CD14-Eosinophils-Basophils-Peripheral-CD34-Natural-immature0
C60-esophagus-tonsil-throat-tongue-uterus-cervix-cervical0
C61-migratory-Dendritic-immature-Macrophage-xeroderma-cord-b0
C62-Burkitt-tonsil-CD19-submaxillary-spleen-salivary-lymph0
C63-neuroectodermal-neuroblastoma-carcinoid-peripheral-chronic-neuroepithelioma-acute0
C64-Mast-chronic-acute-immature-chorionic-Basophils-Dendritic0
C65-CD14-Eosinophils-Monocytederived-Basophils-immature-Macrophage-Neutrophils0
C66-cerebellum-middle-occipital-parietal-medial-amygdala-hippocampus0
C67-CD14-Monocytederived-Macrophage-dura-Dendritic-spleen-lung0
C68-amniotic-chorionic-Placental-salivary-placenta-tongue-mesothelioma0
C69-anaplastic-CD14-cord-hairy-mycosis-adult-NK0
C7-CD14-Eosinophils-Neutrophils-Smooth-Basophils-Macrophage-Mast0
C70-parotid-submaxillary-salivary-throat-trachea-aorta-tongue0
C71-Monocytederived-Macrophage-CD14-Dendritic-Osteoblast-leiomyoma-Prostate0
C72-skeletal-tongue-throat-heart-diaphragm-penis-left0
C73-pineal-eye-retina-caudate-cerebellum-left-parietal0
C74-splenic-B-b-plasma-xeroderma-lymphoma-hairy0
C75-Eosinophils-Natural-CD8-Basophils-CD14-CD4-Peripheral0
C76-argyrophil-gastrointestinal-temporal-duodenum-neuroblastoma-merkel-smallcell0
C77-Saos2-osteosarcoma-Neutrophils-Natural-Chondrocyte-Basophils-CD80
C78-lymphoma-plasma-tonsil-appendix-lymph-seminal-trachea0
C79-chorionic-Chondrocyte-Cardiac-Smooth-Fibroblast-Preadipocyte-Mesenchymal1.001
C8-Natural-CD8-Basophils-CD4-CD14-Peripheral-CD340
C80-immature-migratory-CD14-Dendritic-splenic-cord-Mast0
C81-trachea-salivary-throat-aorta-eye-submaxillary-parotid0
C82-Basophils-CD14-Eosinophils-Natural-Peripheral-immature-CD340
C83-choriocarcinoma-pancreatic-placenta-chorionic-HES3GFP-testicular-amniotic0
C84-choriocarcinoma-pancreatic-Wilms-Mallassezderived-thymus-salivary-colon0
C85-neuroblastoma-carcinoid-retinoblastoma-small-pineal-rhabdomyosarcoma-medulloblastoma0
C86-colon-carcinoid-small-neuroectodermal-giant-large-neuroepithelioma0
C87-retinoblastoma-left-nonsmall-heart-small-diaphragm-bronchogenic0
C88-Melanocyte-melanoma-Macrophage-Mesenchymal-migratory-Dendritic-Monocytederived0
C89-small-retinoblastoma-medulloblastoma-iPS-acantholytic-eye-bronchogenic0
C9-skeletal-diaphragm-tongue-throat-penis-heart-left0
C90-neuroectodermal-peripheral-neuroepithelioma-neuroblastoma-carcinoid-parietal-putamen0
C91-Fibroblast-Smooth-mesenchymal-Mesothelial-Small-Preadipocyte-Hair0
C92-CD14CD16-CD14-Eosinophils-Basophils-Neutrophils-Macrophage-Whole0
C93-chronic-acute-leukemia-acantholytic-medulloblastoma-testis-papillotubular0
C94-smallcell-adrenal-lung-nonsmall-small-somatostatinoma-teratocarcinoma0
C95-lung-aorta-trachea-penis-Alveolar-throat-endometrioid0
C96-non-acute-tonsil-spleen-Burkitt-lymphoma-appendix0
C97-small-smallcell-gastrointestinal-argyrophil-putamen-duodenum-brain0
C98-CD8-Natural-Basophils-blood-CD4-Peripheral-Whole0
C99-hairy-mycosis-submaxillary-salivary-cord-kidney-parotid0



Repeat families with enriched expression in this sample<b>Summary:</b>Ranked list of repeat family expression in this sample relative tothe median expression in the FANTOM5 collection is shown. Value is log10transformed.<br><b>Analyst:</b>NA<br><br>link to dataset.<br>data



TFBS(DNA)motifs over-represented in proximal region of promoters active in this sample

JASPAR motifs<b>Summary:</b>Association of JASPAR motif to the promoter expression in thissample. Pearson's correlation between the number of TFBSs estimated byusing the position-weight matrix for each promoter and its expression isexpressed as Z-score by taking the ones based on random position-weightmatrix, and the tail probability of the normal distribution correspondingto the Z-score is taken as the resulting P-value. Lower P-value indicatesmore (non-random) association of the motif to promoter expression<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data

library id: CNhs12403

Jaspar motifP-value
MA0002.20.105
MA0003.10.991
MA0004.10.0217
MA0006.10.465
MA0007.10.537
MA0009.10.22
MA0014.10.182
MA0017.10.0497
MA0018.20.195
MA0019.10.783
MA0024.10.00152
MA0025.10.0974
MA0027.10.815
MA0028.10.413
MA0029.10.722
MA0030.10.159
MA0031.10.17
MA0035.25.23208e-4
MA0038.10.43
MA0039.20.321
MA0040.10.198
MA0041.10.731
MA0042.10.667
MA0043.10.117
MA0046.10.316
MA0047.20.968
MA0048.10.00634
MA0050.10.577
MA0051.10.145
MA0052.10.108
MA0055.10.303
MA0057.10.676
MA0058.10.00281
MA0059.10.0444
MA0060.12.07666e-4
MA0061.10.0118
MA0062.20.506
MA0065.20.00174
MA0066.10.451
MA0067.10.645
MA0068.10.248
MA0069.10.0413
MA0070.10.65
MA0071.10.154
MA0072.10.438
MA0073.10.72
MA0074.10.612
MA0076.10.0984
MA0077.10.0759
MA0078.10.655
MA0079.20.318
MA0080.21.52063e-7
MA0081.10.0289
MA0083.13.29492e-5
MA0084.10.289
MA0087.10.691
MA0088.10.829
MA0090.12.18488e-5
MA0091.10.824
MA0092.10.869
MA0093.10.0243
MA0099.20.319
MA0100.10.597
MA0101.10.00171
MA0102.20.519
MA0103.17.27761e-6
MA0104.29.43344e-5
MA0105.10.0647
MA0106.10.132
MA0107.10.00158
MA0108.20.0885
MA0111.10.0953
MA0112.20.563
MA0113.10.819
MA0114.10.0171
MA0115.10.189
MA0116.10.874
MA0117.10.365
MA0119.10.901
MA0122.10.474
MA0124.10.0517
MA0125.10.153
MA0131.10.993
MA0135.10.875
MA0136.11.05811e-5
MA0137.20.785
MA0138.20.753
MA0139.10.492
MA0140.10.00497
MA0141.10.0297
MA0142.10.0208
MA0143.10.658
MA0144.10.881
MA0145.10.413
MA0146.10.926
MA0147.10.00395
MA0148.10.347
MA0149.10.0953
MA0150.10.18
MA0152.10.0743
MA0153.10.805
MA0154.10.936
MA0155.10.947
MA0156.10.0431
MA0157.10.206
MA0159.10.436
MA0160.10.00573
MA0162.10.096
MA0163.10.533
MA0164.10.496
MA0258.10.503
MA0259.10.336



FANTOM5 phase1 novel unique motifs<b>Summary:</b>Association of the 169 novel and unique motifs discovered in FANTOM5 phase1 in this sample. Among the de-novo motifs discovered by DMF, HOMER,ChIPMunk, and ScanAll, only novel motifs are selected after comparison with known motif sets, and their clustering based on MACRO-APE resulted in169 novel and unique motifs. Their association to the promoter expression is evaluated in the same way to the JASPAR motif above<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data

library id: CNhs12403

Novel motifP-value
10.082
100.446
1000.376
1010.778
1020.0295
1030.167
1040.385
1050.731
1060.0379
1070.753
1080.868
1090.0982
110.191
1100.854
1110.0895
1120.667
1130.0153
1140.685
1150.861
1160.88
1170.511
1180.687
1190.546
120.869
1200.498
1210.803
1220.0479
1230.00901
1240.0943
1250.706
1260.179
1270.763
1280.131
1290.328
130.412
1300.664
1310.687
1320.627
1330.616
1340.828
1350.538
1360.177
1370.45
1380.391
1390.351
140.46
1400.923
1410.538
1420.931
1430.316
1440.992
1450.92
1460.187
1470.0783
1480.0606
1490.118
150.0233
1500.617
1510.237
1520.535
1530.615
1540.523
1550.00826
1560.505
1570.99
1580.248
1590.232
160.91
1600.364
1610.353
1620.562
1630.81
1640.459
1650.514
1660.0292
1670.226
1680.893
1690.281
170.799
180.624
190.182
20.7
200.559
210.158
220.895
230.587
240.171
250.109
260.818
270.398
280.672
290.863
30.673
300.502
310.671
323.08185e-7
330.402
340.782
350.637
360.0347
370.64
380.362
390.486
40.231
400.0246
410.453
420.268
430.443
440.157
450.463
460.493
470.134
480.413
490.0529
50.807
500.525
510.448
520.762
530.358
540.557
550.409
560.297
570.448
580.137
590.925
60.612
600.199
610.171
620.144
630.665
640.121
650.651
660.225
670.902
680.562
690.351
70.0955
700.359
710.398
720.36
730.315
740.38
750.353
760.896
770.53
780.0292
790.00724
80.0954
800.836
810.412
820.798
830.0436
840.124
850.433
860.606
870.393
880.645
890.845
90.838
900.159
910.996
920.711
930.642
940.716
950.343
960.944
970.521
980.0593
990.156



de novo motifs identified by HOMER in promoters active in this sample<b>Summary:</b>The result of HOMER in this sample is shown.<br><b>Analyst:</b>NA <br> library id: CNhs12403


FANTOM5 (FF) ontology

Direct parent terms


Ancestor terms (non development)<b>Summary:</b>Connected ontology terms with is_a, part_of or located_in relationship <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source data<br>data

CL: Cell type
0000000 (cell), 0000000 (cell)
0000003 (native cell)
0000548 (animal cell)
0002320 (connective tissue cell)
0002371 (somatic cell)
0000255 (eukaryotic cell)
0000057 (fibroblast)
0002620 (skin fibroblast)

UBERON: Anatomy
0000468 (multi-cellular organism)
0002097 (skin of body)
0002199 (integument)
0002384 (connective tissue)
0000479 (tissue)
0000062 (organ)
0000061 (anatomical structure)
0000465 (material anatomical entity)
0000467 (anatomical system)
0001062 (anatomical entity)
0000480 (anatomical group)
0003102 (surface structure)
0002416 (integumental system)

FF: FANTOM5
0000102 (sample by type)
0000210 (human sample)
0000002 (in vivo cell sample)
0000101 (sample by species)
0000057 (fibroblast sample)
0000250 (human fibroblast of skin sample)
0000001 (sample)
0000408 (cellular fractionation sample)
0000350 (experimentally modified sample)
0000406 (nuclear fraction sample)
0000668 (human Fibroblast - skin normal, nuclear fraction sample)

Ancestor terms (development)<b>Summary:</b>Connected ontology terms with develops_from, derives_from or preceded_by relationship <br><b>Analyst:</b> Hideya Kawaji <br><br>link to source data<br>data
CL:0000134 (mesenchymal cell)

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