FF:10777-110G3: Difference between revisions

Latest revision as of 15:03, 3 June 2020

Name:	NK T cell leukemia cell line:KHYG-1
Species:	Human (Homo sapiens)
Library ID:	CNhs11867
Sample type:	cell lines
Genomic View:	UCSC
RefEX:	Specific genes
CAGEd-oPOSSUM:	link
ZENBU report :	link

Additional information

Sample information

strain	NA
tissue	blood
dev stage	NA
sex	female
age	45
cell type	t cell, nk, immature
cell line	KHYG-1
company	JAPAN HEALTH SCIENCES FOUNDATION - Health Science Research Resources Bank
collaboration	FANTOM5 OSC CORE (contact: Al Forrest)
External link for information	[{{{sample_info_link}}} {{{sample_info_link}}}]

RNA information

lot number	NA
catalog number	NA
sample type	total RNA
extraction protocol (Details)	OP-RNA-extraction-totalRNA-miRNeasy_Mini-v1.0

CAGE Accession numbers

Method		Sample accession id
CAGE		SAMD00005120

Library accession numbers

Library id		Method		Exp. accession id		Run accession id
CNhs11867		CAGE		DRX007793		DRR008665

Accession ID Hg19

Library id		BAM		CTSS
CNhs11867		DRZ000090		DRZ001475

Accession ID Hg38

Library id		BAM		CTSS
CNhs11867		DRZ011440		DRZ012825

Download raw sequence, BAM & CTSS

Hg19

Fasta	BAM	CTSS
download	download	donwload

Hg38

BAM	CTSS
download	donwload

RNA-Seq Accession numbers

Method		Sample accession id
RNA-Seq		SAMD00005120

Library accession numbers

Library id		Method		Exp. accession id		Run accession id
RDhi10082		RNA-Seq		DRX057139		DRR062898

Accession ID Hg19

Library id		BAM		CTSS
RDhi10082		DRZ007974

Relative expression to median (log10)

Transcription factors with enriched expression in this sampleRanked list of transcription factor promoter expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.

Co-expression clusters with enriched expression in this sampleRanked list of co-expression cluster expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed. Analyst:NA link to dataset. data

Coexpression cluster	score
C0-CD14-Eosinophils-Neutrophils-Basophils-CD34-immature-Peripheral	0
C1-testis-epididymis-embryonic-medulla-pituitary-trachea-caudate	0
C10-occipital-temporal-parietal-brain-duodenum-Neurons-Neural	0
C100-rhabdomyosarcoma-gastric-pineal-Wilms-cervical-mesodermal-endometrial	0
C101-small-cerebellum-maxillary-colon-parietal-epididymis-merkel	0
C102-neuroblastoma-testicular-pituitary-carcinosarcoma-rectum-acantholytic-iPS	0
C103-CD4-CD8-Natural-Peripheral-Whole-Neutrophils-Basophils	0
C104-Mast-Basophils-immature-CD14-CD34-eye-Natural	0
C105-heart-skeletal-occipital-hippocampus-acute-Sebocyte-penis	0.385
C106-Hep2-epitheloid-placenta-cervical-rectal-anaplastic-glassy	0
C107-Neutrophils-CD14-Eosinophils-Monocytederived-Whole-Peripheral-blood	0
C108-breast-hepatoblastoma-MCF7-parotid-salivary-submaxillary-prostate	0
C109-Reticulocytes-non-acute-Hodgkin-Burkitt-retinoblastoma-lymphoma	0.599
C11-cerebellum-medulla-pons-parietal-occipital-middle-medial	0
C110-leukemia-chronic-Eosinophils-acute-Whole-CD34-Lymphatic	0
C111-medulla-lung-trachea-testis-caudate-epididymis-throat	0
C112-gastric-pancreas-temporal-duodenum-small-extraskeletal-adrenal	0
C113-thyroid-throat-lung-lymph-small-colon-trachea	0
C114-teratocarcinoma-medulloblastoma-carcinosarcoma-iPS-anaplastic-acute-neuroblastoma	0
C115-pituitary-Neural-caudate-putamen-amygdala-medulla-hippocampus	0
C116-myeloma-xeroderma-tonsil-CD19-spleen-lymph-trachea	0
C117-serous-clear-kidney-neuroectodermal-mesothelioma-endometrial-Intestinal	0
C118-cerebellum-parietal-occipital-medial-middle-frontal-insula	0
C119-CD4-CD8-Natural-Neutrophils-CD14-Peripheral-CD19	0.0461
C12-Mast-Basophils-immature-chorionic-mature-CD14-Eosinophils	0
C120-immature-salivary-tongue-skin-cervical-CD14-CD34	0
C121-NK-Natural-CD8-CD4-anaplastic-chronic-B	0.855
C122-chronic-Reticulocytes-skeletal-leukemia-acute-colon-Tracheal	0
C123-CD19-Natural-CD8-CD4-CD14-Peripheral-Basophils	0
C124-small-temporal-duodenum-colon-gall-signet-Hepatocyte	0
C125-mucinous-alveolar-mesothelioma-Smooth-lung-CD14-Nucleus	0
C126-gastrointestinal-argyrophil-smallcell-merkel-bile-insula-brain	0
C127-maxillary-small-hepatoblastoma-hepatocellular-alveolar-colon-argyrophil	0
C128-testicular-choriocarcinoma-H9-teratocarcinoma-pancreatic-iPS-HES3GFP	0
C129-liver-Hepatocyte-colon-duodenum-temporal-testicular-small	0
C13-Neutrophils-Eosinophils-CD14-Monocytederived-Whole-Peripheral-CD4	0
C130-iPS-HES3GFP-H9-teratocarcinoma-testicular-colon-Alveolar	0
C131-lung-trachea-Alveolar-thyroid-umbilical-throat-skin	0
C132-acute-small-Dendritic-Macrophage-CD14-Neutrophils-Monocytederived	0
C133-signet-gall-small-kidney-colon-ductal-adenocarcinoma	0
C134-skeletal-diaphragm-tongue-throat-Skeletal-skin-penis	0
C135-neuroblastoma-retinoblastoma-carcinoid-choriocarcinoma-testicular-acute-rectum	0
C136-Wilms-extraskeletal-anaplastic-rhabdomyosarcoma-cholangiocellular-nonsmall-neuroectodermal	0
C137-large-ductal-melanoma-cervical-Endothelial-Smooth-chronic	0
C138-diffuse-Burkitt-lymphangiectasia-lymphoma-acute-CD19-pineal	0
C139-astrocytoma-skin-salivary-gall-serous-Mallassezderived-renal	0
C14-Whole-blood-Reticulocytes-liver-Neutrophils-Eosinophils-spleen	0
C140-Renal-Endothelial-Hepatic-Lymphatic-heart-lung-spleen	0
C141-Hodgkin-acute-thymus-chronic-vein-CD4-B	0
C142-Preadipocyte-Fibroblast-hepatic-Ewing-Adipocyte-Olfactory-Hair	0
C143-Monocytederived-CD14-Macrophage-Dendritic-Basophils-CD14CD16-Osteoblast	0
C144-CD4-tonsil-NK-appendix-CD8-splenic-mycosis	0
C145-neuroblastoma-peripheral-neuroectodermal-neuroepithelioma-carcinoid-adult-extraskeletal	0
C146-lymphangiectasia-lymphoma-gall-lymph-tonsil-gastric-transitionalcell	0
C147-Neutrophils-Eosinophils-CD4-CD14-CD8-Natural-Peripheral	0.0517
C148-kidney-small-epididymis-pancreas-serous-duodenum-temporal	0
C149-occipital-medial-brain-amygdala-parietal-cerebral-cerebellum	0
C15-anaplastic-small-skeletal-neuroblastoma-parietal-temporal-tongue	0
C150-merkel-carcinoid-nonsmall-gastrointestinal-argyrophil-pineal-small	0
C151-CD14-Natural-Basophils-CD8-Eosinophils-CD4-Mast	0
C152-peripheral-neuroectodermal-neuroepithelioma-neuroblastoma-testicular-carcinoid-lung	0
C153-rhabdomyosarcoma-liposarcoma-pancreatic-somatostatinoma-Reticulocytes-lymphoma-testicular	0
C154-adenocarcinoma-Mesenchymal-Cardiac-small-sacrococcigeal-Smooth-Prostate	0
C155-pituitary-placenta-nonsmall-cervical-smallcell-choriocarcinoma-epitheloid	0
C156-plasma-splenic-hereditary-B-large-xeroderma-b	0
C157-testicular-H9-testis-iPS-teratocarcinoma-colon-trachea	0
C158-adrenal-gastric-temporal-parietal-duodenum-caudate-putamen	0
C159-choriocarcinoma-pancreatic-placenta-chorionic-testicular-bronchioalveolar-seminal	0
C16-medial-amygdala-occipital-parietal-olfactory-putamen-brain	0
C160-medulla-Hepatocyte-retina-corpus-liver-pineal-cerebral	0
C161-mesothelioma-Mesothelial-acute-mesenchymal-extraskeletal-renal-placenta	0
C162-spinal-locus-medulla-substantia-thalamus-globus-diencephalon	0
C163-Skeletal-skeletal-Pericytes-Hepatic-rhabdomyosarcoma-throat-mesenchymal	0
C164-signet-corpus-optic-mucinous-substantia-salivary-choriocarcinoma	0
C165-epithelioid-Adipocyte-mesothelioma-myxofibrosarcoma-lung-gastric-Mesothelial	0
C166-Macrophage-Monocytederived-Dendritic-adipose-lymph-CD14-lung	0
C167-Basophils-Mast-Eosinophils-Neutrophils-Peripheral-Whole-CD4	0
C168-Mast-CD14-immature-Basophils-Eosinophils-CD34-Peripheral	0
C169-hereditary-adult-gall-lymphangiectasia-chronic-b-choriocarcinoma	0
C17-Mast-CD14-Monocytederived-Lymphatic-Smooth-mesenchymal-Macrophage	0
C170-epitheloid-cervical-Hep2-keratoacanthoma-adult-neuroblastoma-signet	0
C171-merkel-neuroblastoma-pineal-retinoblastoma-carcinoid-small-eye	0
C172-chorionic-skeletal-tongue-amniotic-liver-gastrointestinal-Pericytes	0
C173-Adipocyte-mature-skin-left-Hepatocyte-Osteoblast-adipose	0
C174-CD14-Neutrophils-Smooth-mesothelioma-embryonic-Monocytederived-Eosinophils	0
C175-Eosinophils-Neutrophils-CD4-Basophils-CD19-CD8-Natural	0.0654
C176-Eosinophils-Neutrophils-Mast-CD14-CD4-Basophils-CD19	0.0177
C177-melanoma-Melanocyte-mesenchymal-retina-Mallassezderived-Gingival-squamous	0
C178-spleen-liver-Hepatocyte-b-lymph-vein-thymus	0
C179-CD19-Peripheral-lymphoma-blood-lymph-spleen-tonsil	0
C18-CD4-CD8-thymus-Whole-Peripheral-Natural-blood	0.0461
C180-skeletal-heart-Hepatocyte-acute-occipital-hippocampus-middle	0.111
C181-liposarcoma-somatostatinoma-neuroblastoma-mesothelioma-nonsmall-small-Alveolar	0
C182-renal-mature-mesothelioma-lung-Mammary-Adipocyte-acute	0
C183-acute-non-CD34-diffuse-CD133-myeloma-Burkitt	0
C184-somatostatinoma-smallcell-nonsmall-small-gastrointestinal-pineal-thyroid	0
C185-small-adrenal-gastric-Mesenchymal-acute-HES3GFP-testis	0
C186-squamous-papillotubular-large-Tracheal-oral-Small-epidermoid	0
C187-migratory-immature-Dendritic-CD19-CD14-Monocytederived-Macrophage	0.0878
C188-left-heart-tongue-skeletal-Skeletal-diaphragm-throat	0
C189-b-splenic-tonsil-CD19-lymph-appendix-spleen	0
C19-embryonic-testis-cord-chronic-CD14-NK-mesothelioma	0
C190-colon-small-rectum-duodenum-appendix-temporal-oral	0
C191-leiomyoblastoma-Mast-parietal-acute-bone-neuroepithelioma-embryonic	0
C192-Neutrophils-CD14-Peripheral-Eosinophils-CD8-Natural-CD4	0
C193-Mesenchymal-Adipocyte-mature-Cardiac-heart-CD14CD16-CD14	0
C194-MCF7-breast-prostate-Intestinal-diffuse-Wilms-Alveolar	0
C195-Small-Gingival-Bronchial-Smooth-mesenchymal-Urothelial-Tracheal	0
C196-testicular-iPS-H9-teratocarcinoma-HES3GFP-choriocarcinoma-endometrial	0
C197-tongue-esophagus-tonsil-salivary-cervix-nasal-Gingival	0
C198-Mesenchymal-Hair-Hepatic-Fibroblast-Smooth-tenocyte-Pericytes	0
C199-glioblastoma-B-osteosarcoma-Fibroblast-heart-rhabdomyosarcoma-myxofibrosarcoma	0
C2-Eosinophils-Neutrophils-CD14-Whole-Basophils-Peripheral-Mast	0
C20-heart-left-skeletal-diaphragm-tongue-umbilical-throat	0
C200-seminal-Cardiac-Smooth-Hair-submaxillary-Neutrophils-mixed	-0.153
C201-colon-small-adenocarcinoma-duodenum-temporal-signet-gall	0
C202-salivary-skin-penis-tongue-uterus-cervical-immature	0
C203-acute-NK-chronic-CD133-lymphoma-immature-Dendritic	0
C204-Smooth-nasal-CD4-CD19-CD8-CD14-CD34	0
C205-mycosis-cord-hairy-xeroderma-CD4-B-b	0
C206-melanoma-somatostatinoma-nonsmall-small-neuroblastoma-smallcell-pituitary	0
C207-Corneal-Keratinocyte-Esophageal-Mammary-Bronchial-Urothelial-Sebocyte	0
C208-skin-amniotic-papillotubular-salivary-umbilical-Alveolar-serous	0
C209-acute-myelodysplastic-CD34-granulocyte-CD133-liver-spleen	0
C21-cord-mycosis-hairy-xeroderma-adult-CD4-anaplastic	0
C210-Burkitt-lymphoma-appendix-acute-diffuse-CD19-tonsil	0
C211-small-Hepatocyte-liver-colon-temporal-duodenum-kidney	0
C212-chronic-acute-Whole-Reticulocytes-leukemia-blood-CD34	0
C213-CD14-Natural-CD8-CD4-Basophils-Eosinophils-Peripheral	0
C214-Neurons-Neural-duodenum-temporal-occipital-parietal-brain	0
C215-chronic-acute-peripheral-Hepatocyte-osteosarcoma-NK-immature	0
C216-osteosarcoma-Smooth-Mesenchymal-large-neuroectodermal-acute-CD34	0
C217-carcinoid-neuroectodermal-mature-mesodermal-colon-acute-occipital	0
C218-tonsil-lymph-CD19-spleen-colon-appendix-salivary	0
C219-nasal-Basophils-amniotic-Melanocyte-CD14-Osteoblast-duodenum	0
C22-CD4-CD8-Natural-Basophils-CD14-Peripheral-CD19	0
C220-Adipocyte-mature-left-breast-skin-liver-adipose	0
C221-alveolar-Osteoblast-Myoblast-mesenchymal-liposarcoma-Smooth-hepatocellular	0
C222-Melanocyte-Tracheal-Neutrophils-seminal-Smooth-Hair-Chondrocyte	-0.154
C223-Chondrocyte-basal-renal-Fibroblast-Smooth-spindle-Synoviocyte	0
C224-clear-serous-pleomorphic-choriocarcinoma-mesothelioma-amniotic-renal	0
C225-ductal-alveolar-giant-prostate-salivary-squamous-Tracheal	0
C226-Corneal-Keratinocyte-Esophageal-Urothelial-Mammary-Bronchial-Tracheal	0
C227-chorionic-amniotic-Mesenchymal-Placental-gastric-diaphragm-tongue	0
C228-colon-Intestinal-Prostate-hepatoblastoma-hepatocellular-testis-adult	0
C229-Mesenchymal-CD4-Melanocyte-acute-skeletal-left-heart	0.0516
C23-CD4-CD8-Natural-Peripheral-Basophils-CD19-CD14	0
C230-aorta-normal-heart-penis-osteosarcoma-basal-lung	0
C231-Mesothelial-mesenchymal-mesothelioma-Fibroblast-Preadipocyte-leiomyoma-mycosis	0
C232-teratocarcinoma-HES3GFP-H9-iPS-testicular-neuroblastoma-cerebellum	0
C233-uterus-cervix-ovary-epididymis-colon-rectum-MCF7	0
C234-oral-epidermoid-malignant-cervical-ductal-lung-keratoacanthoma	0
C235-Intestinal-Prostate-liver-colon-small-kidney-pancreas	0
C236-CD14-Neutrophils-Monocytederived-renal-Eosinophils-testis-mesothelioma	0
C237-acute-breast-testicular-hepatoblastoma-chronic-argyrophil-Bronchial	0
C238-stomach-gall-breast-duodenum-temporal-MCF7-smallcell	0
C239-CD4-lymphangiectasia-CD8-NK-mycosis-Renal-hairy	0.278
C24-pineal-eye-retina-retinoblastoma-medulloblastoma-small-cerebral	0
C240-Adipocyte-Preadipocyte-Osteoblast-Chondrocyte-tenocyte-Synoviocyte-mesenchymal	0
C241-Reticulocytes-chronic-Tracheal-Hodgkin-Endothelial-Hair-thymus	0.782
C242-acute-Chondrocyte-myelodysplastic-granulocyte-biphenotypic-Fibroblast-stomach	0
C243-Chondrocyte-trachea-Synoviocyte-mesodermal-renal-Fibroblast-Ewing	0
C244-CD14-Monocytederived-Hepatocyte-heart-Neutrophils-acute-Macrophage	0
C245-prostate-penis-salivary-esophagus-kidney-Neutrophils-Pancreatic	0
C246-Neutrophils-Eosinophils-Whole-CD14-CD14CD16-Basophils-migratory	0.305
C247-pons-locus-medulla-spinal-paracentral-medial-occipital	0
C248-iPS-Aortic-Hep2-amygdala-acute-medial-Myoblast	0
C249-nonsmall-small-smallcell-occipital-somatostatinoma-maxillary-medial	0
C25-small-colon-temporal-duodenum-liver-Hepatocyte-gall	0
C250-Mast-Neutrophils-CD14-Eosinophils-CD8-Peripheral-CD4	0
C251-gall-tonsil-trachea-CD14-salivary-throat-tongue	0
C252-hepatic-Olfactory-sacrococcigeal-leiomyoma-normal-Synoviocyte-glioblastoma	0
C253-spleen-rhabdomyosarcoma-Hepatocyte-small-uterus-liver-rectum	0
C254-prostate-rhabdomyosarcoma-seminal-Fibroblast-transitionalcell-Smooth-Iris	0
C255-Wilms-leiomyoblastoma-kidney-adrenal-MCF7-epithelioid-Mast	0
C256-occipital-caudate-amygdala-medial-thalamus-hippocampus-medulla	0
C257-pineal-insula-frontal-occipital-temporal-medial-paracentral	0
C258-hepatoblastoma-hepatocellular-signet-colon-Intestinal-Prostate-gastric	0
C259-Preadipocyte-Adipocyte-Fibroblast-Chondrocyte-tenocyte-normal-Ewing	0
C26-Eosinophils-Neutrophils-CD14-CD14CD16-Basophils-Monocytederived-Whole	0
C260-acute-chronic-Natural-NK-Basophils-biphenotypic-blood	0
C261-locus-medial-parietal-pons-diencephalon-olfactory-spinal	0
C262-breast-MCF7-skeletal-Reticulocytes-mucinous-hepatoblastoma-Wilms	0
C263-cervical-keratoacanthoma-tongue-skin-esophagus-throat-tonsil	0
C264-giant-keratoacanthoma-colon-fibrosarcoma-HES3GFP-Hep2-acute	0
C265-CD4-Eosinophils-CD14-Natural-CD19-Basophils-CD8	0.0726
C266-acute-chronic-leukemia-small-choriocarcinoma-hepatoma-Mast	0
C267-pancreatic-placenta-choriocarcinoma-testicular-teratocarcinoma-chorionic-clear	0
C268-Mallassezderived-Urothelial-Gingival-Small-Bronchial-Tracheal-Prostate	0
C269-Basophils-Mast-Eosinophils-mature-CD14-chorionic-CD4	0
C27-pancreas-temporal-duodenum-salivary-ductus-umbilical-lung	0
C270-CD4-Fibroblast-acute-iPS-Aortic-CD34-Smooth	0
C271-pineal-spinal-locus-globus-medulla-thalamus-cerebellum	0
C272-CD19-CD4-CD8-Whole-Peripheral-lymph-tonsil	0.126
C273-Neutrophils-CD14-Eosinophils-Monocytederived-CD4-Natural-Mast	0
C274-CD14-Mast-immature-Basophils-mature-vagina-Hepatocyte	0
C275-pons-medulla-cerebellum-locus-thalamus-diencephalon-spinal	0
C276-mesothelioma-kidney-renal-small-clear-cerebellum-Renal	0
C277-mesothelioma-epithelioid-thyroid-extraskeletal-alveolar-glioblastoma-adenocarcinoma	0
C278-amygdala-hippocampus-insula-medial-putamen-temporal-olfactory	0
C279-parietal-cerebellum-occipital-temporal-middle-duodenum-medial	0
C28-thymus-acute-vein-Hodgkin-chronic-throat-Dendritic	0
C280-Mast-Natural-CD19-CD8-Eosinophils-CD34-CD4	0
C281-Hodgkin-Reticulocytes-chronic-NK-acute-retinoblastoma-small	0.637
C282-acute-B-tonsil-CD19-submaxillary-lymph-throat	0
C283-tenocyte-Chondrocyte-mesenchymal-Macrophage-pleomorphic-Synoviocyte-cholangiocellular	0
C284-parietal-occipital-medial-temporal-olfactory-locus-hippocampus	0
C285-cervical-Hep2-small-colon-temporal-duodenum-bronchogenic	0
C286-cerebellum-occipital-optic-parietal-globus-caudate-medial	0
C287-Hepatocyte-Chondrocyte-Adipocyte-Synoviocyte-liver-tenocyte-mesenchymal	0
C288-Chondrocyte-Renal-Pericytes-Fibroblast-aorta-Smooth-Meningeal	0
C289-chorionic-skeletal-heart-Mast-amniotic-granulosa-left	0
C29-mature-adipose-Adipocyte-breast-Lymphatic-vein-heart	0
C290-Eosinophils-CD14-Basophils-Mast-CD4-CD8-immature	0.0461
C291-spinal-substantia-retina-medulla-tongue-skeletal-trachea	0
C292-Mesenchymal-skin-umbilical-Adipocyte-mesenchymal-Chondrocyte-skeletal	0
C293-CD14-CD14CD16-Basophils-Peripheral-immature-Eosinophils-CD34	0
C294-CD14-Macrophage-Monocytederived-CD14CD16-Neutrophils-Basophils-Peripheral	0
C295-Fibroblast-Smooth-Myoblast-Chondrocyte-hepatic-Synoviocyte-Preadipocyte	0
C296-gall-small-mesothelioma-acute-bronchioalveolar-epidermoid-mixed	0
C297-Eosinophils-CD4-Basophils-Natural-Neutrophils-CD8-Peripheral	0
C298-small-optic-substantia-thalamus-diencephalon-globus-occipital	0
C299-CD14CD16-Eosinophils-Neutrophils-CD14-Whole-Basophils-blood	0
C3-occipital-temporal-insula-medial-postcentral-frontal-amygdala	0
C30-thyroid-throat-mesothelioma-mucinous-trachea-chorionic-mesenchymal	0
C300-CD4-CD8-NK-Natural-blood-mycosis-Basophils	0.223
C301-Smooth-mesenchymal-Endothelial-Hepatic-basal-hepatic-chorionic	0.00254
C302-acute-peripheral-Neutrophils-NK-myelodysplastic-CD34-carcinoid	0
C303-CD14-Basophils-Peripheral-Eosinophils-CD14CD16-Neutrophils-Whole	0
C305-heart-skeletal-smooth-left-bladder-penis-esophagus	0
C31-skeletal-tongue-diaphragm-throat-penis-skin-trachea	0
C32-middle-occipital-parietal-hippocampus-amygdala-medial-olfactory	0
C33-Reticulocytes-liver-Whole-blood-chronic-acute-spleen	0
C34-placenta-chorionic-choriocarcinoma-mesothelioma-Wilms-Smooth-bile	0
C35-caudate-putamen-diencephalon-nucleus-globus-thalamus-insula	0
C36-B-b-splenic-plasma-xeroderma-adrenal-Burkitt	0
C37-salivary-submaxillary-parotid-seminal-tongue-ductus-trachea	0
C38-extraskeletal-rhabdomyosarcoma-adrenal-rectal-mesothelioma-lung-Wilms	0
C39-epididymis-ductus-seminal-testis-acute-thyroid-CD133	0
C4-optic-corpus-substantia-medulla-spinal-thalamus-globus	0
C40-eye-retina-Lens-pineal-tongue-retinoblastoma-small	0
C41-retina-eye-medulla-Retinal-medulloblastoma-kidney-pineal	0
C42-small-lung-maxillary-pharyngeal-Mesenchymal-Wilms-colon	0
C43-ductus-seminal-duodenum-temporal-gall-prostate-bladder	0
C44-Dendritic-CD19-CD133-granulocyte-acute-thymus-immature	0
C45-testicular-choriocarcinoma-H9-teratocarcinoma-Wilms-pancreatic-iPS	0
C46-acute-Hodgkin-thymus-CD8-chronic-CD4-merkel	0
C47-CD19-Burkitt-acute-xeroderma-tonsil-lymphoma-appendix	0
C48-smooth-bladder-esophagus-colon-penis-aorta-uterus	0
C49-H9-iPS-testicular-HES3GFP-teratocarcinoma-hepatoblastoma-choriocarcinoma	0
C5-Hepatocyte-liver-hepatocellular-Intestinal-kidney-small-pancreas	0
C50-chorionic-placenta-amniotic-migratory-smallcell-chronic-choriocarcinoma	0
C51-kidney-mesothelioma-renal-signet-gall-lung-pancreas	0
C52-adult-NK-chronic-cord-testis-embryonic-myeloma	0
C53-medulloblastoma-pineal-retinoblastoma-small-retina-eye-pituitary	0
C54-Dendritic-Macrophage-Monocytederived-CD14-leiomyoma-adipose-immature	0
C55-hepatocellular-Intestinal-liver-Prostate-fibrosarcoma-Hepatocyte-hepatoblastoma	0
C56-heart-left-umbilical-skeletal-penis-diaphragm-tongue	0
C57-Neutrophils-Eosinophils-Whole-CD4-CD8-CD19-Natural	0.54
C58-Melanocyte-melanoma-retina-Retinal-eye-migratory-H9	0
C59-Smooth-Fibroblast-Mesenchymal-tenocyte-Ewing-skin-hepatic	0
C6-CD14-Eosinophils-Basophils-Peripheral-CD34-Natural-immature	0
C60-esophagus-tonsil-throat-tongue-uterus-cervix-cervical	0
C61-migratory-Dendritic-immature-Macrophage-xeroderma-cord-b	0
C62-Burkitt-tonsil-CD19-submaxillary-spleen-salivary-lymph	0
C63-neuroectodermal-neuroblastoma-carcinoid-peripheral-chronic-neuroepithelioma-acute	0
C64-Mast-chronic-acute-immature-chorionic-Basophils-Dendritic	0
C65-CD14-Eosinophils-Monocytederived-Basophils-immature-Macrophage-Neutrophils	0
C66-cerebellum-middle-occipital-parietal-medial-amygdala-hippocampus	0
C67-CD14-Monocytederived-Macrophage-dura-Dendritic-spleen-lung	0
C68-amniotic-chorionic-Placental-salivary-placenta-tongue-mesothelioma	0
C69-anaplastic-CD14-cord-hairy-mycosis-adult-NK	0
C7-CD14-Eosinophils-Neutrophils-Smooth-Basophils-Macrophage-Mast	0
C70-parotid-submaxillary-salivary-throat-trachea-aorta-tongue	0
C71-Monocytederived-Macrophage-CD14-Dendritic-Osteoblast-leiomyoma-Prostate	0
C72-skeletal-tongue-throat-heart-diaphragm-penis-left	0
C73-pineal-eye-retina-caudate-cerebellum-left-parietal	0
C74-splenic-B-b-plasma-xeroderma-lymphoma-hairy	0
C75-Eosinophils-Natural-CD8-Basophils-CD14-CD4-Peripheral	0
C76-argyrophil-gastrointestinal-temporal-duodenum-neuroblastoma-merkel-smallcell	0
C77-Saos2-osteosarcoma-Neutrophils-Natural-Chondrocyte-Basophils-CD8	0
C78-lymphoma-plasma-tonsil-appendix-lymph-seminal-trachea	0
C79-chorionic-Chondrocyte-Cardiac-Smooth-Fibroblast-Preadipocyte-Mesenchymal	0
C8-Natural-CD8-Basophils-CD4-CD14-Peripheral-CD34	0
C80-immature-migratory-CD14-Dendritic-splenic-cord-Mast	0
C81-trachea-salivary-throat-aorta-eye-submaxillary-parotid	0
C82-Basophils-CD14-Eosinophils-Natural-Peripheral-immature-CD34	0
C83-choriocarcinoma-pancreatic-placenta-chorionic-HES3GFP-testicular-amniotic	0
C84-choriocarcinoma-pancreatic-Wilms-Mallassezderived-thymus-salivary-colon	0
C85-neuroblastoma-carcinoid-retinoblastoma-small-pineal-rhabdomyosarcoma-medulloblastoma	0
C86-colon-carcinoid-small-neuroectodermal-giant-large-neuroepithelioma	0
C87-retinoblastoma-left-nonsmall-heart-small-diaphragm-bronchogenic	0
C88-Melanocyte-melanoma-Macrophage-Mesenchymal-migratory-Dendritic-Monocytederived	0
C89-small-retinoblastoma-medulloblastoma-iPS-acantholytic-eye-bronchogenic	0
C9-skeletal-diaphragm-tongue-throat-penis-heart-left	0
C90-neuroectodermal-peripheral-neuroepithelioma-neuroblastoma-carcinoid-parietal-putamen	0
C91-Fibroblast-Smooth-mesenchymal-Mesothelial-Small-Preadipocyte-Hair	0
C92-CD14CD16-CD14-Eosinophils-Basophils-Neutrophils-Macrophage-Whole	0
C93-chronic-acute-leukemia-acantholytic-medulloblastoma-testis-papillotubular	0
C94-smallcell-adrenal-lung-nonsmall-small-somatostatinoma-teratocarcinoma	0
C95-lung-aorta-trachea-penis-Alveolar-throat-endometrioid	0
C96-non-acute-tonsil-spleen-Burkitt-lymphoma-appendix	0
C97-small-smallcell-gastrointestinal-argyrophil-putamen-duodenum-brain	0
C98-CD8-Natural-Basophils-blood-CD4-Peripheral-Whole	0.126
C99-hairy-mycosis-submaxillary-salivary-cord-kidney-parotid	0

Repeat families with enriched expression in this sampleSummary:Ranked list of repeat family expression in this sample relative tothe median expression in the FANTOM5 collection is shown. Value is log10transformed. Analyst:NA link to dataset. data

TFBS(DNA)motifs over-represented in proximal region of promoters active in this sample

JASPAR motifsSummary:Association of JASPAR motif to the promoter expression in thissample. Pearson's correlation between the number of TFBSs estimated byusing the position-weight matrix for each promoter and its expression isexpressed as Z-score by taking the ones based on random position-weightmatrix, and the tail probability of the normal distribution correspondingto the Z-score is taken as the resulting P-value. Lower P-value indicatesmore (non-random) association of the motif to promoter expression Analyst: Michiel de Hoon link to dataset. data

library id: CNhs11867

Jaspar motif	Logo	P-value
MA0002.2	MA0002.2	0.00125
MA0003.1	MA0003.1	0.53
MA0004.1	MA0004.1	0.304
MA0006.1	MA0006.1	0.347
MA0007.1	MA0007.1	0.543
MA0009.1	MA0009.1	0.914
MA0014.1	MA0014.1	0.539
MA0017.1	MA0017.1	0.282
MA0018.2	MA0018.2	0.249
MA0019.1	MA0019.1	0.0787
MA0024.1	MA0024.1	1.50297e-6
MA0025.1	MA0025.1	0.273
MA0027.1	MA0027.1	0.369
MA0028.1	MA0028.1	1.36227e-5
MA0029.1	MA0029.1	0.328
MA0030.1	MA0030.1	0.104
MA0031.1	MA0031.1	0.272
MA0035.2	MA0035.2	0.00158
MA0038.1	MA0038.1	0.229
MA0039.2	MA0039.2	0.476
MA0040.1	MA0040.1	0.207
MA0041.1	MA0041.1	0.29
MA0042.1	MA0042.1	0.297
MA0043.1	MA0043.1	0.176
MA0046.1	MA0046.1	0.249
MA0047.2	MA0047.2	0.966
MA0048.1	MA0048.1	0.492
MA0050.1	MA0050.1	1.0389e-4
MA0051.1	MA0051.1	0.0818
MA0052.1	MA0052.1	0.0535
MA0055.1	MA0055.1	0.391
MA0057.1	MA0057.1	0.934
MA0058.1	MA0058.1	0.224
MA0059.1	MA0059.1	0.0147
MA0060.1	MA0060.1	5.38374e-13
MA0061.1	MA0061.1	0.724
MA0062.2	MA0062.2	1.022e-11
MA0065.2	MA0065.2	0.0422
MA0066.1	MA0066.1	0.878
MA0067.1	MA0067.1	0.45
MA0068.1	MA0068.1	0.0285
MA0069.1	MA0069.1	0.939
MA0070.1	MA0070.1	0.543
MA0071.1	MA0071.1	0.445
MA0072.1	MA0072.1	0.023
MA0073.1	MA0073.1	0.626
MA0074.1	MA0074.1	0.426
MA0076.1	MA0076.1	9.32635e-8
MA0077.1	MA0077.1	0.508
MA0078.1	MA0078.1	0.718
MA0079.2	MA0079.2	0.331
MA0080.2	MA0080.2	2.07486e-5
MA0081.1	MA0081.1	0.128
MA0083.1	MA0083.1	0.298
MA0084.1	MA0084.1	0.859
MA0087.1	MA0087.1	0.32
MA0088.1	MA0088.1	0.0689
MA0090.1	MA0090.1	4.22347e-4
MA0091.1	MA0091.1	0.928
MA0092.1	MA0092.1	0.872
MA0093.1	MA0093.1	0.272
MA0099.2	MA0099.2	0.0195
MA0100.1	MA0100.1	0.0403
MA0101.1	MA0101.1	0.31
MA0102.2	MA0102.2	0.625
MA0103.1	MA0103.1	0.241
MA0104.2	MA0104.2	0.00442
MA0105.1	MA0105.1	0.0147
MA0106.1	MA0106.1	0.966
MA0107.1	MA0107.1	0.123
MA0108.2	MA0108.2	0.00359
MA0111.1	MA0111.1	0.348
MA0112.2	MA0112.2	0.607
MA0113.1	MA0113.1	0.997
MA0114.1	MA0114.1	0.168
MA0115.1	MA0115.1	0.29
MA0116.1	MA0116.1	2.19174e-4
MA0117.1	MA0117.1	0.993
MA0119.1	MA0119.1	0.856
MA0122.1	MA0122.1	0.371
MA0124.1	MA0124.1	0.978
MA0125.1	MA0125.1	0.696
MA0131.1	MA0131.1	0.0627
MA0135.1	MA0135.1	0.0244
MA0136.1	MA0136.1	4.29368e-8
MA0137.2	MA0137.2	0.77
MA0138.2	MA0138.2	0.571
MA0139.1	MA0139.1	0.0297
MA0140.1	MA0140.1	1.15012e-4
MA0141.1	MA0141.1	0.224
MA0142.1	MA0142.1	0.494
MA0143.1	MA0143.1	0.283
MA0144.1	MA0144.1	0.593
MA0145.1	MA0145.1	0.529
MA0146.1	MA0146.1	0.141
MA0147.1	MA0147.1	0.00215
MA0148.1	MA0148.1	0.937
MA0149.1	MA0149.1	0.0372
MA0150.1	MA0150.1	0.899
MA0152.1	MA0152.1	0.175
MA0153.1	MA0153.1	0.309
MA0154.1	MA0154.1	0.607
MA0155.1	MA0155.1	0.369
MA0156.1	MA0156.1	4.90849e-11
MA0157.1	MA0157.1	0.0234
MA0159.1	MA0159.1	0.312
MA0160.1	MA0160.1	0.662
MA0162.1	MA0162.1	0.935
MA0163.1	MA0163.1	2.66529e-9
MA0164.1	MA0164.1	0.988
MA0258.1	MA0258.1	0.244
MA0259.1	MA0259.1	0.103

FANTOM5 phase1 novel unique motifsSummary:Association of the 169 novel and unique motifs discovered in FANTOM5 phase1 in this sample. Among the de-novo motifs discovered by DMF, HOMER,ChIPMunk, and ScanAll, only novel motifs are selected after comparison with known motif sets, and their clustering based on MACRO-APE resulted in169 novel and unique motifs. Their association to the promoter expression is evaluated in the same way to the JASPAR motif above Analyst: Michiel de Hoon link to dataset. data

library id: CNhs11867

Novel motif	Logo	P-value
1	1	0.0626
10	10	0.00474
100	100	0.299
101	101	0.0264
102	102	0.46
103	103	0.477
104	104	0.581
105	105	0.888
106	106	0.4
107	107	0.324
108	108	0.992
109	109	0.0463
11	11	0.041
110	110	0.307
111	111	0.126
112	112	0.479
113	113	0.466
114	114	0.314
115	115	0.489
116	116	0.809
117	117	0.0176
118	118	0.597
119	119	0.505
12	12	0.875
120	120	0.958
121	121	0.976
122	122	0.666
123	123	2.6626e-4
124	124	0.0067
125	125	0.644
126	126	0.484
127	127	0.295
128	128	0.478
129	129	0.625
13	13	0.162
130	130	0.286
131	131	0.491
132	132	0.913
133	133	0.608
134	134	0.776
135	135	0.7
136	136	0.116
137	137	0.584
138	138	0.324
139	139	0.501
14	14	0.756
140	140	0.534
141	141	0.526
142	142	0.665
143	143	3.44943e-4
144	144	0.661
145	145	0.589
146	146	0.944
147	147	0.194
148	148	0.23
149	149	0.193
15	15	0.281
150	150	0.23
151	151	0.983
152	152	0.0492
153	153	0.57
154	154	0.87
155	155	0.0771
156	156	0.84
157	157	0.63
158	158	0.958
159	159	0.404
16	16	0.541
160	160	0.812
161	161	0.232
162	162	0.863
163	163	0.462
164	164	0.76
165	165	0.754
166	166	0.441
167	167	0.0362
168	168	0.642
169	169	0.856
17	17	0.621
18	18	0.315
19	19	0.677
2	2	0.545
20	20	0.405
21	21	0.265
22	22	0.619
23	23	0.663
24	24	0.582
25	25	0.0551
26	26	0.121
27	27	0.576
28	28	0.431
29	29	0.0261
3	3	0.134
30	30	0.135
31	31	0.797
32	32	0.363
33	33	0.418
34	34	0.691
35	35	0.305
36	36	0.0348
37	37	0.371
38	38	0.569
39	39	0.669
4	4	0.0126
40	40	0.0825
41	41	0.467
42	42	0.146
43	43	0.326
44	44	0.317
45	45	0.477
46	46	0.197
47	47	0.0369
48	48	0.135
49	49	0.0105
5	5	0.826
50	50	0.677
51	51	0.931
52	52	0.0664
53	53	0.201
54	54	0.997
55	55	0.522
56	56	0.677
57	57	0.199
58	58	0.102
59	59	0.889
6	6	0.826
60	60	0.923
61	61	0.1
62	62	0.0909
63	63	0.644
64	64	0.121
65	65	0.783
66	66	3.55465e-7
67	67	0.623
68	68	0.643
69	69	0.735
7	7	0.105
70	70	0.324
71	71	0.0387
72	72	0.549
73	73	0.921
74	74	0.817
75	75	0.00855
76	76	0.518
77	77	0.214
78	78	0.305
79	79	0.265
8	8	0.381
80	80	0.862
81	81	0.41
82	82	0.83
83	83	0.7
84	84	0.523
85	85	0.174
86	86	0.279
87	87	0.176
88	88	0.996
89	89	0.185
9	9	0.772
90	90	0.177
91	91	0.346
92	92	0.495
93	93	0.627
94	94	0.358
95	95	0.0164
96	96	0.415
97	97	0.0967
98	98	0.321
99	99	0.384

de novo motifs identified by HOMER in promoters active in this sampleSummary:The result of HOMER in this sample is shown. Analyst:NA library id: CNhs11867

FANTOM5 (FF) ontology

Direct parent terms

is_a relathionship
CL:0000814 mature NK T cell
EFO:0002091 biological replicate
FF:0000210 human sample
FF:0102504 T-lymphoblastic leukemia cell line sample

Ancestor terms (non development)Summary:Connected ontology terms with is_a, part_of or located_in relationship Analyst: Hideya Kawaji link to source data data

CL: Cell type
0000000 (cell), 0000000 (cell)
0000003 (native cell)
0000988 (hematopoietic cell)
0000548 (animal cell)
0002371 (somatic cell)
0000542 (lymphocyte)
0000219 (motile cell)
0000738 (leukocyte)
0002087 (nongranular leukocyte)
0002242 (nucleate cell)
0000255 (eukaryotic cell)
0000791 (mature alpha-beta T cell)
0000084 (T cell)
0000789 (alpha-beta T cell)
0002419 (mature T cell)
0002127 (innate effector T cell)
0000911 (effector T cell)
0000814 (mature NK T cell)

DOID: Disease
4 (disease)
0050686 (organ system cancer)
162 (cancer)
2531 (hematologic cancer)
14566 (disease of cellular proliferation)
0060083 (immune system cancer)
1240 (leukemia)

FF: FANTOM5
0000102 (sample by type)
0000003 (cell line sample)
0000210 (human sample)
0000101 (sample by species)
0000001 (sample)
0100737 (leukemia cell line sample)
0102504 (T-lymphoblastic leukemia cell line sample)
0101035 (hematopoietic cell line sample)
0100741 (lymphocytic leukemia cell line sample)
0100773 (lymphoblastoid cell line sample)
0100739 (lymphoblastic leukemia cell line sample)

Ancestor terms (development)Summary:Connected ontology terms with develops_from, derives_from or preceded_by relationship Analyst: Hideya Kawaji link to source data data
CL:0000134 (mesenchymal cell)
CL:0000051 (common lymphoid progenitor)
CL:0000790 (immature alpha-beta T cell)
CL:0002425 (early T lineage precursor)

@@ Line 1: / Line 1: @@
 {{f5samples
-|DRA_sample_Accession=CAGE@DRS007688
+|DRA_sample_Accession=CAGE@SAMD00005120
-|accession_numbers=CAGE;DRX007793;DRR008665;DRZ000090;DRZ001475
+|DRA_sample_Accession_RNASeq=RNA-Seq@SAMD00005120
+|accession_numbers=CAGE;DRX007793;DRR008665;DRZ000090;DRZ001475;DRZ011440;DRZ012825
+|accession_numbers_RNASeq=RNA-Seq;DRX057139;DRR062898;DRZ007974
 |ancestors_in_anatomy_facet=
 |ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000988,CL:0000548,CL:0002371,CL:0000542,CL:0000219,CL:0000738,CL:0002087,CL:0002242,CL:0000255,CL:0000791,CL:0000084,CL:0000789,CL:0002419,CL:0002127,CL:0000911,CL:0000814
@@ Line 9: / Line 11: @@
 |created_by=
 |creation_date=
-|data_phase=1
+|data_phase=2
-|datafreeze_phase=1
+|datafreeze_phase=2
 |def=
 |expression_enrichment_score=chr2:68592406..68592424,+!p1@PLEK!1.99!95.94!PLEK;;chr17:45810594..45810608,+!p1@TBX21!1.92!82.72!TBX21;;chr8:67525443..67525459,-!p2@MYBL1!1.83!97.74!MYBL1;;chr3:27763807..27763822,-!p1@EOMES!1.77!57.72!EOMES;;chr1:25291475..25291511,-!p2@RUNX3!1.66!45.06!RUNX3;;chr6:391743..391759,+!p1@IRF4!1.63!41.36!IRF4;;chr20:50159198..50159299,-!p1@NFATC2!1.54!48.08!NFATC2;;chr2:192015701..192015743,-!p1@STAT4!1.48!40.13!STAT4;;chr9:117150254..117150271,-!p1@AKNA!1.46!74.98!AKNA;;chr8:72756063..72756125,-!p1@MSC!1.44!52.79!MSC;;chr14:75988771..75988826,+!p1@BATF!1.43!34.41!BATF;;chr2:231090433..231090469,+!p1@SP140!1.43!25.89!SP140;;chr1:25256756..25256774,-!p1@RUNX3!1.41!45.73!RUNX3;;chr8:72756637..72756664,-!p3@MSC!1.35!24.32!MSC;;chrX:2418949..2419024,-!p1@DHRSX,p1@ZBED1!1.31!19.50!ZBED1;;chr1:158978768..158978800,+!p8@IFI16!1.28!18.16!IFI16;;chr7:137620650..137620677,-!p3@CREB3L2!1.27!17.71!CREB3L2;;chr8:67525473..67525518,-!p1@MYBL1!1.23!35.98!MYBL1;;chr7:50343634..50343717,+!p2@IKZF1!1.20!14.68!IKZF1;;chr20:42543441..42543497,+!p1@TOX2!1.18!63.22!TOX2;;chr7:27205136..27205164,-!p1@HOXA9!1.17!13.90!HOXA9;;chr8:72756667..72756736,-!p2@MSC!1.16!21.07!MSC;;chr10:8096772..8096787,+!p2@GATA3!1.16!15.80!GATA3;;chr2:68592394..68592405,+!p2@PLEK!1.16!13.56!PLEK;;chr1:23857698..23857733,-!p1@E2F2!1.14!23.65!E2F2;;chr20:56195474..56195506,-!p1@ZBP1!1.10!11.66!ZBP1;;chr19:36204309..36204335,+!p1@ZBTB32!1.09!11.32!ZBTB32;;chr8:60031619..60031676,-!p1@TOX!1.05!22.42!TOX;;chr8:72756023..72756055,-!p6@MSC!1.05!12.89!MSC;;chr17:46703212..46703238,-!p2@HOXB9!1.05!10.20!HOXB9;;chr7:137620684..137620711,-!p4@CREB3L2!1.04!9.86!CREB3L2;;chr16:68119324..68119364,+!p1@NFATC3!1.03!44.27!NFATC3;;chr14:75988831..75988847,+!p2@BATF!1.03!9.64!BATF;;chr15:60884706..60884743,-!p1@RORA!1.02!49.65!RORA;;chr15:74833584..74833626,+!p1@ARID3B!1.01!22.08!ARID3B;;chr2:231090344..231090361,-!p3@SP110!1.01!9.30!SP110;;chr3:18486354..18486377,-!p2@SATB1!1.00!11.32!SATB1;;chr17:46703687..46703740,-!p1@HOXB9!0.98!8.52!HOXB9;;chr7:50343895..50343936,+!p5@IKZF1!0.97!8.41!IKZF1;;chr8:72755987..72756002,-!p7@MSC!0.97!8.41!MSC;;chr7:50344251..50344288,+!p3@IKZF1!0.96!8.18!IKZF1;;chr17:46703942..46703964,-!p4@HOXB9!0.96!8.07!HOXB9;;chr20:56195525..56195556,-!p2@ZBP1!0.95!7.96!ZBP1;;chr2:231090471..231090504,+!p2@SP140!0.95!7.85!SP140;;chr19:19779619..19779670,+!p1@ZNF101!0.94!22.53!ZNF101;;chr8:67525524..67525543,-!p3@MYBL1!0.93!12.78!MYBL1;;chr5:176738887..176738934,-!p1@MXD3!0.92!51.00!MXD3;;chr7:50344289..50344323,+!p1@IKZF1!0.92!7.40!IKZF1;;chr1:212873267..212873332,-!p1@BATF3!0.91!9.75!BATF3;;chr1:25291620..25291635,-!p4@RUNX3!0.91!7.06!RUNX3;;chr1:158979686..158979745,+!p1@IFI16!0.90!240.76!IFI16;;chr20:32274179..32274213,-!p1@E2F1!0.90!48.31!E2F1;;chr13:41593425..41593480,-!p1@ELF1!0.89!45.62!ELF1;;chr6:106546808..106546833,+!p3@PRDM1!0.88!8.52!PRDM1;;chr8:37963407..37963454,+!p2@ASH2L!0.87!20.29!ASH2L;;chr21:47278815..47278834,+!p6@PCBP3!0.87!6.39!PCBP3;;chr7:64838786..64838809,+!p2@ZNF92!0.86!37.32!ZNF92;;chr14:37131058..37131139,+!p1@PAX9!0.86!6.16!PAX9;;chr8:42698194..42698239,-!p2@THAP1!0.85!28.58!THAP1;;chr17:41277372..41277418,-!p1@BRCA1!0.85!23.43!BRCA1;;chr4:4291837..4291859,-!p2@LYAR!0.85!20.74!LYAR;;chr7:27190547..27190591,-!p1@HOXA6!0.85!6.05!HOXA6;;chr19:4153613..4153652,+!p1@CREB3L3!0.85!6.05!CREB3L3;;chr19:19729477..19729542,-!p1@PBX4!0.84!13.23!PBX4;;chr7:50348268..50348366,+!p4@IKZF1!0.84!5.94!IKZF1;;chr16:67063036..67063088,+!p1@CBFB!0.83!100.32!CBFB;;chr7:148581327..148581347,-!p2@EZH2!0.83!20.62!EZH2;;chr10:8096631..8096660,+!p1@GATA3!0.83!7.17!GATA3;;chr3:27763613..27763618,-!p6@EOMES!0.83!5.83!EOMES;;chr17:61920280..61920343,-!p2@SMARCD2!0.82!58.84!SMARCD2;;chr20:48599506..48599526,+!p1@SNAI1!0.82!39.01!SNAI1;;chr16:68118689..68118733,+!p3@NFATC3!0.82!15.02!NFATC3;;chr20:31350184..31350200,+!p1@DNMT3B!0.82!12.33!DNMT3B;;chr10:8095593..8095625,+!p3@GATA3!0.82!6.61!GATA3;;chr7:99214559..99214601,+!p1@ZNF498!0.81!73.19!ZNF498;;chr20:42543506..42543549,+!p2@TOX2!0.81!13.79!TOX2;;chr3:63953435..63953499,+!p1@ATXN7!0.81!5.49!ATXN7;;chr2:192015750..192015793,-!p2@STAT4!0.80!7.29!STAT4;;chr6:100061724..100061753,+!p1@PRDM13!0.80!5.38!PRDM13;;chr7:27196267..27196311,-!p1@HOXA7!0.80!5.38!HOXA7;;chr1:212873084..212873137,-!p2@BATF3!0.80!5.27!BATF3;;chr20:42295713..42295738,+!p2@MYBL2!0.79!33.18!MYBL2;;chr7:148581360..148581425,-!p1@EZH2!0.79!27.24!EZH2;;chr7:99156212..99156244,+!p3@ZNF655!0.79!21.63!ZNF655;;chr15:76629123..76629151,+!p1@ISL2!0.79!5.83!ISL2;;chr3:27762020..27762023,-!p5@EOMES!0.79!5.16!EOMES;;chr1:92951607..92951661,-!p1@GFI1!0.79!5.16!GFI1;;chr17:7388010..7388017,-!p5@ZBTB4!0.78!8.85!ZBTB4;;chr8:72756267..72756296,-!p4@MSC!0.78!7.62!MSC;;chr15:67391010..67391046,+!p13@SMAD3!0.78!5.04!SMAD3;;chr8:102217679..102217719,-!p2@ZNF706!0.77!18.38!ZNF706;;chr1:158978830..158978851,+!p22@IFI16!0.77!4.93!IFI16;;chr20:42295745..42295765,+!p1@MYBL2!0.75!83.39!MYBL2;;chr3:71179699..71179744,-!p2@FOXP1!0.75!37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@@ Line 41: / Line 43: @@
 |fonse_treatment_closure=
 |has_quality=
+|hg19bam=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.cell_line.hCAGE/NK%2520T%2520cell%2520leukemia%2520cell%2520line%253aKHYG-1.CNhs11867.10777-110G3.hg19.nobarcode.bam
+|hg19ctss=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.cell_line.hCAGE/NK%2520T%2520cell%2520leukemia%2520cell%2520line%253aKHYG-1.CNhs11867.10777-110G3.hg19.ctss.bed.gz
+|hg19fasta=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.cell_line.hCAGE/NK%2520T%2520cell%2520leukemia%2520cell%2520line%253aKHYG-1.CNhs11867.10777-110G3.hg19.nobarcode.rdna.fa.gz
+|hg38bam=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.cell_line.hCAGE/NK%2520T%2520cell%2520leukemia%2520cell%2520line%253aKHYG-1.CNhs11867.10777-110G3.hg38.nobarcode.bam
+|hg38ctss=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.cell_line.hCAGE/NK%2520T%2520cell%2520leukemia%2520cell%2520line%253aKHYG-1.CNhs11867.10777-110G3.hg38.nobarcode.ctss.bed.gz
 |id=FF:10777-110G3
 |is_a=CL:0000814;;EFO:0002091;;FF:0000210;;FF:0102504
 |is_obsolete=
 |library_id=CNhs11867
-|library_id_phase_based=1:CNhs11867
+|library_id_phase_based=2:CNhs11867
+|microRNAs=
+|microRNAs_nn=
+|microRNAs_nonnovel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer/#/human#cage;sample;10777
+|microRNAs_novel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer_novel/#/human#cage;sample;10777
 |name=NK T cell leukemia cell line:KHYG-1
 |namespace=FANTOM5
@@ Line 51: / Line 62: @@
 |profile_cagescan=,,,
 |profile_hcage=CNhs11867,LSID830,release010,COMPLETED
-|profile_rnaseq=,,,
+|profile_rnaseq=
 |profile_srnaseq=,,,
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@@ Line 67: / Line 79: @@
 |rna_tube_id=110G3
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+|rnaseq_library_id=RDhi10082
 |sample_age=45
 |sample_category=cell lines
@@ Line 90: / Line 103: @@
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 |xref=
+|zenbu_report=https://fantom.gsc.riken.jp/zenbu/reports/#miRNA_expression_atlas_human;search_select_hide=table111:FF:10777-110G3;search_select_hide=table117:FF:10777-110G3
 }}

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FF:10777-110G3: Difference between revisions

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Latest revision as of 15:03, 3 June 2020

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	Mozilla Cavendish skin modified by DaSch for the Web Community Wiki GitHub project page – Report a bug – Skin version: 2.6.0