FF:11227-116C3: Difference between revisions
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{{f5samples | {{f5samples | ||
|DRA_sample_Accession=CAGE@ | |CNhs11062= | ||
|accession_numbers=CAGE;DRX008212;DRR009084;DRZ000509;DRZ001894!CAGE;DRX008213;DRR009085;DRZ000510;DRZ001895 | |DRA_sample_Accession=CAGE@SAMD00004823 | ||
|DRA_sample_Accession_RNASeq=sRNA-Seq@SAMD00004823 | |||
|accession_numbers=CAGE;DRX008212;DRR009084;DRZ000509;DRZ001894;DRZ011859;DRZ013244!CAGE;DRX008213;DRR009085;DRZ000510;DRZ001895;DRZ011860;DRZ013245 | |||
|accession_numbers_RNASeq=sRNA-Seq;DRX036991;DRR041357;DRZ006999 | |||
|ancestors_in_anatomy_facet= | |ancestors_in_anatomy_facet= | ||
|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000988,CL:0000548,CL:0002371,CL:0000219,CL:0000738,CL:0000990,CL:0000255,CL:0000451,CL:0000840 | |ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000988,CL:0000548,CL:0002371,CL:0000219,CL:0000738,CL:0000990,CL:0000255,CL:0000451,CL:0000840 | ||
| Line 9: | Line 12: | ||
|created_by= | |created_by= | ||
|creation_date= | |creation_date= | ||
|data_phase= | |data_phase=2 | ||
|datafreeze_phase= | |datafreeze_phase=2 | ||
|def= | |def= | ||
|expression_enrichment_score=chr11:47400078..47400106,-!p1@SPI1!2.72!529.70!SPI1;;chr2:68592406..68592424,+!p1@PLEK!2.59!391.97!PLEK;;chr6:391743..391759,+!p1@IRF4!2.40!251.44!IRF4;;chr7:115670804..115670825,-!p1@TFEC!2.32!206.69!TFEC;;chr5:71803177..71803255,-!p1@ZNF366!2.27!185.62!ZNF366;;chr11:47400062..47400077,-!p2@SPI1!2.04!109.18!SPI1;;chr10:64576105..64576133,-!p1@EGR2!2.02!204.08!EGR2;;chr12:54778471..54778528,-!p1@ZNF385A!1.94!86.89!ZNF385A;;chr3:12330560..12330579,+!p1@PPARG!1.88!85.85!PPARG;;chr11:34642612..34642646,+!p1@EHF!1.88!74.18!EHF;;chr6:1312325..1312340,+!p1@FOXQ1!1.87!117.36!FOXQ1;;chr9:102584262..102584276,+!p1@NR4A3!1.81!137.74!NR4A3;;chr19:33793430..33793447,-!p1@CEBPA!1.75!223.58!CEBPA;;chr16:85932760..85932775,+!p1@IRF8!1.72!51.37!IRF8;;chrX:2418949..2419024,-!p1@DHRSX,p1@ZBED1!1.64!42.49!ZBED1;;chr12:12764995..12765017,+!p3@CREBL2!1.62!56.59!CREBL2;;chr8:72756063..72756125,-!p1@MSC!1.57!71.74!MSC;;chr11:47400032..47400043,-!p5@SPI1!1.56!35.70!SPI1;;chr11:47399996..47400014,-!p4@SPI1!1.52!32.39!SPI1;;chr11:47399947..47399961,-!p3@SPI1!1.49!29.60!SPI1;;chr4:47916543..47916580,-!p2@NFXL1!1.45!88.81!NFXL1;;chr7:128577972..128578047,+!p1@IRF5!1.38!35.87!IRF5;;chr12:12764947..12764986,+!p2@CREBL2!1.35!41.09!CREBL2;;chr7:50344289..50344323,+!p1@IKZF1!1.34!20.90!IKZF1;;chr11:47400045..47400060,-!p6@SPI1!1.33!20.37!SPI1;;chr14:75988771..75988826,+!p1@BATF!1.32!26.64!BATF;;chr7:50343634..50343717,+!p2@IKZF1!1.32!19.68!IKZF1;;chr2:68592394..68592405,+!p2@PLEK!1.32!19.68!PLEK;;chr10:31288398..31288455,-!p2@ZNF438!1.31!22.64!ZNF438;;chr2:145277640..145277771,-!p1@ZEB2!1.30!244.83!ZEB2;;chr16:79634624..79634642,-!p1@MAF!1.27!68.96!MAF;;chr9:102584128..102584144,+!p3@NR4A3!1.27!33.61!NR4A3;;chr1:212873084..212873137,-!p2@BATF3!1.27!17.76!BATF3;;chr4:26324474..26324501,+!p16@RBPJ!1.27!17.59!RBPJ;;chr4:47916504..47916515,-!p6@NFXL1!1.24!16.19!NFXL1;;chr9:102584159..102584174,+!p2@NR4A3!1.22!28.21!NR4A3;;chr19:50432132..50432217,+!p2@ATF5!1.21!18.11!ATF5;;chr1:8484007..8484061,-!p13@RERE!1.20!18.81!RERE;;chr9:102584241..102584261,+!p4@NR4A3!1.18!22.11!NR4A3;;chr4:26322267..26322334,+!p3@RBPJ!1.16!32.56!RBPJ;;chr1:158975744..158975769,+!p10@IFI16!1.16!13.58!IFI16;;chr9:102584278..102584285,+!p5@NR4A3!1.16!13.41!NR4A3;;chr22:38609611..38609624,+!p5@MAFF!1.13!12.54!MAFF;;chr7:50344251..50344288,+!p3@IKZF1!1.12!12.19!IKZF1;;chr22:38609570..38609585,+!p6@MAFF!1.08!10.97!MAFF;;chr12:54694758..54694805,-!p1@NFE2!1.06!12.71!NFE2;;chr4:26322673..26322684,+!p11@RBPJ!1.05!10.10!RBPJ;;chr20:39317868..39317884,-!p1@MAFB!1.03!117.89!MAFB;;chr22:38609587..38609607,+!p7@MAFF!1.02!9.58!MAFF;;chr3:69788576..69788648,+!p1@MITF!1.01!50.50!MITF;;chr3:187463179..187463201,-!p2@BCL6!1.01!39.18!BCL6;;chr16:31141328..31141350,+!p2@KAT8!1.01!9.23!KAT8;;chr6:44233252..44233296,-!p1@NFKBIE!1.00!90.03!NFKBIE;;chr1:40367530..40367597,-!p1@MYCL1!1.00!16.72!MYCL1;;chr16:88752861..88752884,-!p2@SNAI3!1.00!9.05!SNAI3;;chr7:115670792..115670797,-!p2@TFEC!0.99!8.88!TFEC;;chr2:61108695..61108753,+!p1@REL!0.98!59.73!REL;;chr11:47279504..47279563,+!p1@NR1H3!0.98!19.68!NR1H3;;chr16:79634595..79634620,-!p2@MAF!0.97!15.67!MAF;;chr15:90544532..90544563,+!p1@ZNF710!0.96!16.54!ZNF710;;chr4:87857474..87857489,+!p7@AFF1!0.96!14.45!AFF1;;chr1:157108130..157108173,-!p1@ETV3!0.95!59.73!ETV3;;chr12:8186270..8186292,+!p3@FOXJ2!0.95!8.01!FOXJ2;;chr4:47916588..47916607,-!p1@NFXL1!0.94!67.04!NFXL1;;chr13:41593425..41593480,-!p1@ELF1!0.93!49.10!ELF1;;chr1:41157641..41157665,+!p7@NFYC!0.93!9.75!NFYC;;chr12:54778351..54778378,-!p6@ZNF385A!0.91!7.14!ZNF385A;;chr2:239148671..239148686,-!p1@HES6!0.90!26.29!HES6;;chr3:12392909..12392921,+!p11@PPARG!0.90!6.97!PPARG;;chr17:26697276..26697303,-!p2@SEBOX,p2@VTN!0.90!6.97!SEBOX;;chr2:70142232..70142251,+!p1@MXD1!0.89!40.40!MXD1;;chr12:54694807..54694832,-!p3@NFE2!0.89!6.79!NFE2;;chr7:17338266..17338282,+!p1@AHR!0.88!75.92!AHR;;chr16:67063211..67063240,+!p2@CBFB!0.88!33.26!CBFB;;chr19:13213954..13214021,-!p4@LYL1!0.87!6.44!LYL1;;chr7:139762641..139762768,-!p1@PARP12!0.86!89.50!PARP12;;chr8:53373491..53373506,-!p4@ST18!0.86!6.27!ST18;;chr1:47691303..47691319,-!p5@TAL1!0.86!6.27!TAL1;;chr3:48282587..48282603,+!p1@ZNF589!0.85!28.38!ZNF589;;chr3:12392932..12392962,+!p8@PPARG!0.85!6.09!PPARG;;chr8:72755987..72756002,-!p7@MSC!0.85!6.09!MSC;;chr12:12764917..12764931,+!p4@CREBL2!0.84!7.84!CREBL2;;chr11:47399920..47399931,-!p7@SPI1!0.84!5.92!SPI1;;chr6:152011654..152011682,+!p1@ESR1!0.84!5.92!ESR1;;chr3:69811882..69811898,+!p6@MITF!0.84!5.92!MITF;;chr4:26323764..26323821,+!p15@RBPJ!0.84!5.92!RBPJ;;chr12:11802753..11802834,+!p2@ETV6!0.83!30.30!ETV6;;chr11:34642656..34642667,+!p2@EHF!0.83!5.75!EHF;;chr7:77428149..77428220,+!p1@PHTF2!0.82!61.12!PHTF2;;chr7:17338324..17338341,+!p3@AHR!0.82!20.02!AHR;;chr20:62462566..62462631,-!p1@ZBTB46!0.82!10.97!ZBTB46;;chrX:129244430..129244442,-!p5@ELF4!0.82!5.57!ELF4;;chr3:69811858..69811881,+!p5@MITF!0.82!5.57!MITF;;chr9:117150254..117150271,-!p1@AKNA!0.81!15.85!AKNA;;chr1:221052776..221052799,+!p1@HLX!0.80!10.10!HLX;;chr2:46524878..46524891,+!p3@EPAS1!0.80!9.75!EPAS1;;chr11:64764435..64764449,-!p1@BATF2!0.80!7.49!BATF2;;chr6:15246200..15246214,+!p2@JARID2!0.79!15.15!JARID2;;chr16:31885093..31885165,+!p1@ZNF267!0.78!84.45!ZNF267;;chr17:40440481..40440550,+!p1@STAT5A!0.78!39.01!STAT5A;;chr4:87928105..87928126,+!p13@AFF1!0.77!7.66!AFF1;;chr4:47916061..47916098,-!p8@NFXL1!0.77!4.88!NFXL1;;chr1:212873826..212873849,-!p6@BATF3!0.77!4.88!BATF3;;chr1:221052733..221052749,+!p2@HLX!0.76!6.44!HLX;;chr4:185395590..185395627,-!p3@IRF2!0.76!6.09!IRF2;;chr4:47916225..47916234,-!p5@NFXL1!0.76!4.70!NFXL1;;chr19:10416315..10416333,-!p1@ZGLP1!0.76!4.70!ZGLP1;;chr18:52989081..52989117,-!p7@TCF4!0.75!7.49!TCF4;;chr1:221053049..221053075,+!p3@HLX!0.74!8.18!HLX;;chr12:11802932..11802949,+!p3@ETV6!0.74!8.18!ETV6;;chr1:212873267..212873332,-!p1@BATF3!0.74!6.27!BATF3;;chr12:56415246..56415286,+!p2@IKZF4!0.74!4.53!IKZF4;;chr7:137620684..137620711,-!p4@CREB3L2!0.74!4.53!CREB3L2;;chr7:150102756..150102772,+!p5@ZNF775!0.74!4.53!ZNF775;;chr11:128563948..128564003,+!p1@FLI1!0.73!58.33!FLI1;;chr16:79633894..79633954,-!p3@MAF!0.73!8.88!MAF;;chr8:72756023..72756055,-!p6@MSC!0.73!5.57!MSC;;chr7:139762438..139762447,-!p4@PARP12!0.73!4.35!PARP12;;chr1:212873162..212873188,-!p3@BATF3!0.73!4.35!BATF3;;chr4:106068026..106068084,+!p1@TET2!0.72!42.66!TET2;;chr4:87857433..87857472,+!p9@AFF1!0.72!8.18!AFF1;;chr2:61108650..61108687,+!p2@REL!0.71!22.64!REL;;chr4:26324517..26324526,+!p48@RBPJ!0.71!4.18!RBPJ;;chr10:31288370..31288393,-!p3@ZNF438!0.71!4.18!ZNF438;;chr6:34204973..34204990,+!p4@HMGA1!0.70!61.29!HMGA1;;chr16:68119324..68119364,+!p1@NFATC3!0.70!20.02!NFATC3;;chr8:72756667..72756736,-!p2@MSC!0.70!6.62!MSC;;chr8:72756267..72756296,-!p4@MSC!0.70!6.27!MSC;;chr4:26323870..26323885,+!p13@RBPJ!0.70!4.00!RBPJ;;chr14:75988831..75988847,+!p2@BATF!0.70!4.00!BATF;;chr5:321810..321877,+!p1@AHRR!0.69!13.93!AHRR;;chr1:158979872..158979898,+!p3@IFI16!0.69!13.23!IFI16;;chr1:168195229..168195294,+!p1@SFT2D2,p1@TBX19!0.68!196.77!TBX19;;chr21:36421535..36421610,-!p2@RUNX1!0.68!15.32!RUNX1;;chr4:87928142..87928165,+!p5@AFF1!0.68!14.45!AFF1;;chr8:72756637..72756664,-!p3@MSC!0.68!4.35!MSC;;chr6:1312155..1312187,+!p2@FOXQ1!0.68!3.83!FOXQ1;;chr7:137620650..137620677,-!p3@CREB3L2!0.68!3.83!CREB3L2;;chr2:169312725..169312810,+!p1@CERS6!0.67!104.13!CERS6;;chr12:124873852..124873881,-!p3@NCOR2!0.67!25.25!NCOR2;;chr20:50159198..50159299,-!p1@NFATC2!0.67!5.75!NFATC2;;chr1:40367668..40367684,-!p2@MYCL1!0.67!3.66!MYCL1;;chr11:13299319..13299424,+!p1@ARNTL!0.66!41.44!ARNTL;;chr12:51566562..51566584,-!p2@TFCP2!0.66!11.14!TFCP2;;chr17:61919985..61920012,-!p3@SMARCD2!0.66!9.75!SMARCD2;;chr4:144435112..144435176,+!p3@SMARCA5!0.66!8.01!SMARCA5;;chr19:36391434..36391450,-!p1@NFKBID!0.66!7.66!NFKBID;;chr8:72756213..72756243,-!p5@MSC!0.66!4.88!MSC;;chr9:110250697..110250738,-!p2@KLF4!0.66!4.35!KLF4;;chr2:238600789..238600925,+!p1@LRRFIP1!0.65!81.67!LRRFIP1;;chrX:129244454..129244488,-!p1@ELF4!0.65!29.25!ELF4;;chr12:53774567..53774658,+!p2@SP1!0.65!19.33!SP1;;chr9:137217986..137218049,+!p3@RXRA!0.65!11.14!RXRA;;chr4:87928328..87928351,+!p6@AFF1!0.65!10.27!AFF1;;chr4:87928307..87928321,+!p8@AFF1!0.65!8.53!AFF1;;chr6:7108855..7108903,+!p5@RREB1!0.65!8.53!RREB1;;chr19:13213662..13213686,-!p1@LYL1!0.65!5.40!LYL1;;chr4:26322419..26322479,+!p2@RBPJ!0.64!47.71!RBPJ;;chr2:238600933..238600985,+!p3@LRRFIP1!0.64!21.24!LRRFIP1;;chr1:151319654..151319698,-!p2@RFX5!0.64!8.18!RFX5;;chr13:37393351..37393423,+!p1@RFXAP!0.63!28.38!RFXAP;;chr2:178129358..178129403,-!p5@NFE2L2!0.63!15.15!NFE2L2;;chr4:57775059..57775139,+!p2@REST!0.63!13.23!REST;;chr18:52989031..52989079,-!p2@TCF4!0.63!8.71!TCF4;;chr7:99156393..99156433,+!p6@ZNF655!0.63!8.18!ZNF655;;chr1:25256756..25256774,-!p1@RUNX3!0.63!6.79!RUNX3;;chr7:64254834..64254854,+!p2@ZNF138!0.63!6.44!ZNF138;;chr2:61108808..61108821,+!p3@REL!0.63!4.35!REL;;chr7:139762578..139762589,-!p2@PARP12!0.63!3.31!PARP12;;chr1:212873061..212873080,-!p4@BATF3!0.63!3.31!BATF3;;chr16:88752889..88752921,-!p1@SNAI3!0.62!3.83!SNAI3;;chr9:102584329..102584341,+!p6@NR4A3!0.62!3.13!NR4A3;;chr10:64018918..64018936,+!p2@ZNF365!0.62!3.13!ZNF365;;chr3:129158715..129158766,-!p2@MBD4!0.61!35.35!MBD4;;chr14:89883412..89883478,-!p3@FOXN3!0.61!11.49!FOXN3;;chr14:64971461..64971542,+!p1@ZBTB1!0.60!73.13!ZBTB1;;chr14:58765217..58765301,+!p1@ARID4A!0.60!32.39!ARID4A;;chr6:106534192..106534224,+!p1@PRDM1!0.60!9.75!PRDM1;;chr4:185395633..185395651,-!p2@IRF2!0.60!5.22!IRF2;;chr2:61108771..61108789,+!p4@REL!0.60!4.88!REL;;chr1:41157671..41157695,+!p6@NFYC!0.60!4.53!NFYC;;chr15:85291372..85291405,+!p3@ZNF592!0.60!4.35!ZNF592;;chr21:30672433..30672464,+!p6@BACH1!0.60!2.96!BACH1;;chr19:23869970..23869991,-!p1@ZNF675!0.59!13.06!ZNF675;;chr19:21950332..21950356,-!p2@ZNF100!0.59!6.97!ZNF100;;chr14:58765305..58765324,+!p4@ARID4A!0.59!3.83!ARID4A;;chr4:26322616..26322652,+!p1@RBPJ!0.58!75.40!RBPJ;;chr4:26322373..26322393,+!p4@RBPJ!0.58!4.53!RBPJ;;chr11:2292226..2292270,-!p1@ASCL2!0.58!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| |expression_enrichment_score=chr11:47400078..47400106,-!p1@SPI1!2.72!529.70!SPI1;;chr2:68592406..68592424,+!p1@PLEK!2.59!391.97!PLEK;;chr6:391743..391759,+!p1@IRF4!2.40!251.44!IRF4;;chr7:115670804..115670825,-!p1@TFEC!2.32!206.69!TFEC;;chr5:71803177..71803255,-!p1@ZNF366!2.27!185.62!ZNF366;;chr11:47400062..47400077,-!p2@SPI1!2.04!109.18!SPI1;;chr10:64576105..64576133,-!p1@EGR2!2.02!204.08!EGR2;;chr12:54778471..54778528,-!p1@ZNF385A!1.94!86.89!ZNF385A;;chr3:12330560..12330579,+!p1@PPARG!1.88!85.85!PPARG;;chr11:34642612..34642646,+!p1@EHF!1.88!74.18!EHF;;chr6:1312325..1312340,+!p1@FOXQ1!1.87!117.36!FOXQ1;;chr9:102584262..102584276,+!p1@NR4A3!1.81!137.74!NR4A3;;chr19:33793430..33793447,-!p1@CEBPA!1.75!223.58!CEBPA;;chr16:85932760..85932775,+!p1@IRF8!1.72!51.37!IRF8;;chrX:2418949..2419024,-!p1@DHRSX,p1@ZBED1!1.64!42.49!ZBED1;;chr12:12764995..12765017,+!p3@CREBL2!1.62!56.59!CREBL2;;chr8:72756063..72756125,-!p1@MSC!1.57!71.74!MSC;;chr11:47400032..47400043,-!p5@SPI1!1.56!35.70!SPI1;;chr11:47399996..47400014,-!p4@SPI1!1.52!32.39!SPI1;;chr11:47399947..47399961,-!p3@SPI1!1.49!29.60!SPI1;;chr4:47916543..47916580,-!p2@NFXL1!1.45!88.81!NFXL1;;chr7:128577972..128578047,+!p1@IRF5!1.38!35.87!IRF5;;chr12:12764947..12764986,+!p2@CREBL2!1.35!41.09!CREBL2;;chr7:50344289..50344323,+!p1@IKZF1!1.34!20.90!IKZF1;;chr11:47400045..47400060,-!p6@SPI1!1.33!20.37!SPI1;;chr14:75988771..75988826,+!p1@BATF!1.32!26.64!BATF;;chr7:50343634..50343717,+!p2@IKZF1!1.32!19.68!IKZF1;;chr2:68592394..68592405,+!p2@PLEK!1.32!19.68!PLEK;;chr10:31288398..31288455,-!p2@ZNF438!1.31!22.64!ZNF438;;chr2:145277640..145277771,-!p1@ZEB2!1.30!244.83!ZEB2;;chr16:79634624..79634642,-!p1@MAF!1.27!68.96!MAF;;chr9:102584128..102584144,+!p3@NR4A3!1.27!33.61!NR4A3;;chr1:212873084..212873137,-!p2@BATF3!1.27!17.76!BATF3;;chr4:26324474..26324501,+!p16@RBPJ!1.27!17.59!RBPJ;;chr4:47916504..47916515,-!p6@NFXL1!1.24!16.19!NFXL1;;chr9:102584159..102584174,+!p2@NR4A3!1.22!28.21!NR4A3;;chr19:50432132..50432217,+!p2@ATF5!1.21!18.11!ATF5;;chr1:8484007..8484061,-!p13@RERE!1.20!18.81!RERE;;chr9:102584241..102584261,+!p4@NR4A3!1.18!22.11!NR4A3;;chr4:26322267..26322334,+!p3@RBPJ!1.16!32.56!RBPJ;;chr1:158975744..158975769,+!p10@IFI16!1.16!13.58!IFI16;;chr9:102584278..102584285,+!p5@NR4A3!1.16!13.41!NR4A3;;chr22:38609611..38609624,+!p5@MAFF!1.13!12.54!MAFF;;chr7:50344251..50344288,+!p3@IKZF1!1.12!12.19!IKZF1;;chr22:38609570..38609585,+!p6@MAFF!1.08!10.97!MAFF;;chr12:54694758..54694805,-!p1@NFE2!1.06!12.71!NFE2;;chr4:26322673..26322684,+!p11@RBPJ!1.05!10.10!RBPJ;;chr20:39317868..39317884,-!p1@MAFB!1.03!117.89!MAFB;;chr22:38609587..38609607,+!p7@MAFF!1.02!9.58!MAFF;;chr3:69788576..69788648,+!p1@MITF!1.01!50.50!MITF;;chr3:187463179..187463201,-!p2@BCL6!1.01!39.18!BCL6;;chr16:31141328..31141350,+!p2@KAT8!1.01!9.23!KAT8;;chr6:44233252..44233296,-!p1@NFKBIE!1.00!90.03!NFKBIE;;chr1:40367530..40367597,-!p1@MYCL1!1.00!16.72!MYCL1;;chr16:88752861..88752884,-!p2@SNAI3!1.00!9.05!SNAI3;;chr7:115670792..115670797,-!p2@TFEC!0.99!8.88!TFEC;;chr2:61108695..61108753,+!p1@REL!0.98!59.73!REL;;chr11:47279504..47279563,+!p1@NR1H3!0.98!19.68!NR1H3;;chr16:79634595..79634620,-!p2@MAF!0.97!15.67!MAF;;chr15:90544532..90544563,+!p1@ZNF710!0.96!16.54!ZNF710;;chr4:87857474..87857489,+!p7@AFF1!0.96!14.45!AFF1;;chr1:157108130..157108173,-!p1@ETV3!0.95!59.73!ETV3;;chr12:8186270..8186292,+!p3@FOXJ2!0.95!8.01!FOXJ2;;chr4:47916588..47916607,-!p1@NFXL1!0.94!67.04!NFXL1;;chr13:41593425..41593480,-!p1@ELF1!0.93!49.10!ELF1;;chr1:41157641..41157665,+!p7@NFYC!0.93!9.75!NFYC;;chr12:54778351..54778378,-!p6@ZNF385A!0.91!7.14!ZNF385A;;chr2:239148671..239148686,-!p1@HES6!0.90!26.29!HES6;;chr3:12392909..12392921,+!p11@PPARG!0.90!6.97!PPARG;;chr17:26697276..26697303,-!p2@SEBOX,p2@VTN!0.90!6.97!SEBOX;;chr2:70142232..70142251,+!p1@MXD1!0.89!40.40!MXD1;;chr12:54694807..54694832,-!p3@NFE2!0.89!6.79!NFE2;;chr7:17338266..17338282,+!p1@AHR!0.88!75.92!AHR;;chr16:67063211..67063240,+!p2@CBFB!0.88!33.26!CBFB;;chr19:13213954..13214021,-!p4@LYL1!0.87!6.44!LYL1;;chr7:139762641..139762768,-!p1@PARP12!0.86!89.50!PARP12;;chr8:53373491..53373506,-!p4@ST18!0.86!6.27!ST18;;chr1:47691303..47691319,-!p5@TAL1!0.86!6.27!TAL1;;chr3:48282587..48282603,+!p1@ZNF589!0.85!28.38!ZNF589;;chr3:12392932..12392962,+!p8@PPARG!0.85!6.09!PPARG;;chr8:72755987..72756002,-!p7@MSC!0.85!6.09!MSC;;chr12:12764917..12764931,+!p4@CREBL2!0.84!7.84!CREBL2;;chr11:47399920..47399931,-!p7@SPI1!0.84!5.92!SPI1;;chr6:152011654..152011682,+!p1@ESR1!0.84!5.92!ESR1;;chr3:69811882..69811898,+!p6@MITF!0.84!5.92!MITF;;chr4:26323764..26323821,+!p15@RBPJ!0.84!5.92!RBPJ;;chr12:11802753..11802834,+!p2@ETV6!0.83!30.30!ETV6;;chr11:34642656..34642667,+!p2@EHF!0.83!5.75!EHF;;chr7:77428149..77428220,+!p1@PHTF2!0.82!61.12!PHTF2;;chr7:17338324..17338341,+!p3@AHR!0.82!20.02!AHR;;chr20:62462566..62462631,-!p1@ZBTB46!0.82!10.97!ZBTB46;;chrX:129244430..129244442,-!p5@ELF4!0.82!5.57!ELF4;;chr3:69811858..69811881,+!p5@MITF!0.82!5.57!MITF;;chr9:117150254..117150271,-!p1@AKNA!0.81!15.85!AKNA;;chr1:221052776..221052799,+!p1@HLX!0.80!10.10!HLX;;chr2:46524878..46524891,+!p3@EPAS1!0.80!9.75!EPAS1;;chr11:64764435..64764449,-!p1@BATF2!0.80!7.49!BATF2;;chr6:15246200..15246214,+!p2@JARID2!0.79!15.15!JARID2;;chr16:31885093..31885165,+!p1@ZNF267!0.78!84.45!ZNF267;;chr17:40440481..40440550,+!p1@STAT5A!0.78!39.01!STAT5A;;chr4:87928105..87928126,+!p13@AFF1!0.77!7.66!AFF1;;chr4:47916061..47916098,-!p8@NFXL1!0.77!4.88!NFXL1;;chr1:212873826..212873849,-!p6@BATF3!0.77!4.88!BATF3;;chr1:221052733..221052749,+!p2@HLX!0.76!6.44!HLX;;chr4:185395590..185395627,-!p3@IRF2!0.76!6.09!IRF2;;chr4:47916225..47916234,-!p5@NFXL1!0.76!4.70!NFXL1;;chr19:10416315..10416333,-!p1@ZGLP1!0.76!4.70!ZGLP1;;chr18:52989081..52989117,-!p7@TCF4!0.75!7.49!TCF4;;chr1:221053049..221053075,+!p3@HLX!0.74!8.18!HLX;;chr12:11802932..11802949,+!p3@ETV6!0.74!8.18!ETV6;;chr1:212873267..212873332,-!p1@BATF3!0.74!6.27!BATF3;;chr12:56415246..56415286,+!p2@IKZF4!0.74!4.53!IKZF4;;chr7:137620684..137620711,-!p4@CREB3L2!0.74!4.53!CREB3L2;;chr7:150102756..150102772,+!p5@ZNF775!0.74!4.53!ZNF775;;chr11:128563948..128564003,+!p1@FLI1!0.73!58.33!FLI1;;chr16:79633894..79633954,-!p3@MAF!0.73!8.88!MAF;;chr8:72756023..72756055,-!p6@MSC!0.73!5.57!MSC;;chr7:139762438..139762447,-!p4@PARP12!0.73!4.35!PARP12;;chr1:212873162..212873188,-!p3@BATF3!0.73!4.35!BATF3;;chr4:106068026..106068084,+!p1@TET2!0.72!42.66!TET2;;chr4:87857433..87857472,+!p9@AFF1!0.72!8.18!AFF1;;chr2:61108650..61108687,+!p2@REL!0.71!22.64!REL;;chr4:26324517..26324526,+!p48@RBPJ!0.71!4.18!RBPJ;;chr10:31288370..31288393,-!p3@ZNF438!0.71!4.18!ZNF438;;chr6:34204973..34204990,+!p4@HMGA1!0.70!61.29!HMGA1;;chr16:68119324..68119364,+!p1@NFATC3!0.70!20.02!NFATC3;;chr8:72756667..72756736,-!p2@MSC!0.70!6.62!MSC;;chr8:72756267..72756296,-!p4@MSC!0.70!6.27!MSC;;chr4:26323870..26323885,+!p13@RBPJ!0.70!4.00!RBPJ;;chr14:75988831..75988847,+!p2@BATF!0.70!4.00!BATF;;chr5:321810..321877,+!p1@AHRR!0.69!13.93!AHRR;;chr1:158979872..158979898,+!p3@IFI16!0.69!13.23!IFI16;;chr1:168195229..168195294,+!p1@SFT2D2,p1@TBX19!0.68!196.77!TBX19;;chr21:36421535..36421610,-!p2@RUNX1!0.68!15.32!RUNX1;;chr4:87928142..87928165,+!p5@AFF1!0.68!14.45!AFF1;;chr8:72756637..72756664,-!p3@MSC!0.68!4.35!MSC;;chr6:1312155..1312187,+!p2@FOXQ1!0.68!3.83!FOXQ1;;chr7:137620650..137620677,-!p3@CREB3L2!0.68!3.83!CREB3L2;;chr2:169312725..169312810,+!p1@CERS6!0.67!104.13!CERS6;;chr12:124873852..124873881,-!p3@NCOR2!0.67!25.25!NCOR2;;chr20:50159198..50159299,-!p1@NFATC2!0.67!5.75!NFATC2;;chr1:40367668..40367684,-!p2@MYCL1!0.67!3.66!MYCL1;;chr11:13299319..13299424,+!p1@ARNTL!0.66!41.44!ARNTL;;chr12:51566562..51566584,-!p2@TFCP2!0.66!11.14!TFCP2;;chr17:61919985..61920012,-!p3@SMARCD2!0.66!9.75!SMARCD2;;chr4:144435112..144435176,+!p3@SMARCA5!0.66!8.01!SMARCA5;;chr19:36391434..36391450,-!p1@NFKBID!0.66!7.66!NFKBID;;chr8:72756213..72756243,-!p5@MSC!0.66!4.88!MSC;;chr9:110250697..110250738,-!p2@KLF4!0.66!4.35!KLF4;;chr2:238600789..238600925,+!p1@LRRFIP1!0.65!81.67!LRRFIP1;;chrX:129244454..129244488,-!p1@ELF4!0.65!29.25!ELF4;;chr12:53774567..53774658,+!p2@SP1!0.65!19.33!SP1;;chr9:137217986..137218049,+!p3@RXRA!0.65!11.14!RXRA;;chr4:87928328..87928351,+!p6@AFF1!0.65!10.27!AFF1;;chr4:87928307..87928321,+!p8@AFF1!0.65!8.53!AFF1;;chr6:7108855..7108903,+!p5@RREB1!0.65!8.53!RREB1;;chr19:13213662..13213686,-!p1@LYL1!0.65!5.40!LYL1;;chr4:26322419..26322479,+!p2@RBPJ!0.64!47.71!RBPJ;;chr2:238600933..238600985,+!p3@LRRFIP1!0.64!21.24!LRRFIP1;;chr1:151319654..151319698,-!p2@RFX5!0.64!8.18!RFX5;;chr13:37393351..37393423,+!p1@RFXAP!0.63!28.38!RFXAP;;chr2:178129358..178129403,-!p5@NFE2L2!0.63!15.15!NFE2L2;;chr4:57775059..57775139,+!p2@REST!0.63!13.23!REST;;chr18:52989031..52989079,-!p2@TCF4!0.63!8.71!TCF4;;chr7:99156393..99156433,+!p6@ZNF655!0.63!8.18!ZNF655;;chr1:25256756..25256774,-!p1@RUNX3!0.63!6.79!RUNX3;;chr7:64254834..64254854,+!p2@ZNF138!0.63!6.44!ZNF138;;chr2:61108808..61108821,+!p3@REL!0.63!4.35!REL;;chr7:139762578..139762589,-!p2@PARP12!0.63!3.31!PARP12;;chr1:212873061..212873080,-!p4@BATF3!0.63!3.31!BATF3;;chr16:88752889..88752921,-!p1@SNAI3!0.62!3.83!SNAI3;;chr9:102584329..102584341,+!p6@NR4A3!0.62!3.13!NR4A3;;chr10:64018918..64018936,+!p2@ZNF365!0.62!3.13!ZNF365;;chr3:129158715..129158766,-!p2@MBD4!0.61!35.35!MBD4;;chr14:89883412..89883478,-!p3@FOXN3!0.61!11.49!FOXN3;;chr14:64971461..64971542,+!p1@ZBTB1!0.60!73.13!ZBTB1;;chr14:58765217..58765301,+!p1@ARID4A!0.60!32.39!ARID4A;;chr6:106534192..106534224,+!p1@PRDM1!0.60!9.75!PRDM1;;chr4:185395633..185395651,-!p2@IRF2!0.60!5.22!IRF2;;chr2:61108771..61108789,+!p4@REL!0.60!4.88!REL;;chr1:41157671..41157695,+!p6@NFYC!0.60!4.53!NFYC;;chr15:85291372..85291405,+!p3@ZNF592!0.60!4.35!ZNF592;;chr21:30672433..30672464,+!p6@BACH1!0.60!2.96!BACH1;;chr19:23869970..23869991,-!p1@ZNF675!0.59!13.06!ZNF675;;chr19:21950332..21950356,-!p2@ZNF100!0.59!6.97!ZNF100;;chr14:58765305..58765324,+!p4@ARID4A!0.59!3.83!ARID4A;;chr4:26322616..26322652,+!p1@RBPJ!0.58!75.40!RBPJ;;chr4:26322373..26322393,+!p4@RBPJ!0.58!4.53!RBPJ;;chr11:2292226..2292270,-!p1@ASCL2!0.58!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| ||
|fantom_cat=http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000222;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000234;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000451;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000576;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000738;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000763;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000766;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000840;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000988;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000990;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0002193;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0002390;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0002405 | |||
|ffid_belonging_in_development=CL:0000049,CL:0000134 | |ffid_belonging_in_development=CL:0000049,CL:0000134 | ||
|fonse_cell_line= | |fonse_cell_line= | ||
| Line 41: | Line 45: | ||
|fonse_treatment_closure= | |fonse_treatment_closure= | ||
|has_quality= | |has_quality= | ||
|hg19bam=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/Dendritic%2520Cells%2520-%2520monocyte%2520immature%2520derived%252c%2520donor1%252c%2520tech_rep1.CNhs10855.11227-116C3.hg19.nobarcode.bam | |||
|hg19ctss=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/Dendritic%2520Cells%2520-%2520monocyte%2520immature%2520derived%252c%2520donor1%252c%2520tech_rep1.CNhs10855.11227-116C3.hg19.ctss.bed.gz | |||
|hg19fasta=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/Dendritic%2520Cells%2520-%2520monocyte%2520immature%2520derived%252c%2520donor1%252c%2520tech_rep1.CNhs10855.11227-116C3.hg19.nobarcode.rdna.fa.gz | |||
|hg38bam=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.primary_cell.hCAGE/Dendritic%2520Cells%2520-%2520monocyte%2520immature%2520derived%252c%2520donor1%252c%2520tech_rep1.CNhs10855.11227-116C3.hg38.nobarcode.bam | |||
|hg38ctss=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.primary_cell.hCAGE/Dendritic%2520Cells%2520-%2520monocyte%2520immature%2520derived%252c%2520donor1%252c%2520tech_rep1.CNhs10855.11227-116C3.hg38.nobarcode.ctss.bed.gz | |||
|id=FF:11227-116C3 | |id=FF:11227-116C3 | ||
|is_a=EFO:0002091;;FF:0000044 | |is_a=EFO:0002091;;FF:0000044 | ||
|is_obsolete= | |is_obsolete= | ||
|library_id=CNhs10855!CNhs11062 | |library_id=CNhs10855!CNhs11062 | ||
|library_id_phase_based= | |library_id_phase_based=2:CNhs11062 | ||
|microRNAs= | |||
|microRNAs_nn= | |||
|microRNAs_nonnovel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer/#/human#cage;sample;11227 | |||
|microRNAs_nonnovel_srna=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2016/vis_viewer/#/human#srna;sample;SRhi10002.TGACCA.11227 | |||
|microRNAs_novel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer_novel/#/human#cage;sample;11227 | |||
|microRNAs_novel_srna=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2016/vis_viewer_novel/#/human#srna;sample;SRhi10002.TGACCA.11227 | |||
|name=Dendritic Cells - monocyte immature derived, donor1 | |name=Dendritic Cells - monocyte immature derived, donor1 | ||
|namespace=FANTOM5 | |namespace=FANTOM5 | ||
| Line 51: | Line 66: | ||
|profile_cagescan=,,, | |profile_cagescan=,,, | ||
|profile_hcage=CNhs10855 & CNhs11062,LSID702,release008,COMPLETED | |profile_hcage=CNhs10855 & CNhs11062,LSID702,release008,COMPLETED | ||
|profile_rnaseq= | |profile_rnaseq= | ||
|profile_srnaseq=SRhi10002,,, | |profile_srnaseq=SRhi10002,,, | ||
|refex=http://refex.dbcls.jp/genelist.php?lang | |||
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| ||
| Line 67: | Line 83: | ||
|rna_tube_id=116C3 | |rna_tube_id=116C3 | ||
|rna_weight_ug=5 | |rna_weight_ug=5 | ||
|rnaseq_library_id=SRhi10002.TGACCA | |||
|sample_age=57 | |sample_age=57 | ||
|sample_category=primary cells | |sample_category=primary cells | ||
| Line 90: | Line 107: | ||
|top_motifs=TLX2:2.42905157399;FOXP3:2.19919098602;SREBF1,2:1.98257064089;ALX1:1.64783035022;STAT1,3:1.35447147848;NKX2-2,8:1.30050096021;SPI1:1.20150641088;NR6A1:1.18809693347;NFE2L2:1.10158960343;ESRRA:1.10037007521;EN1,2:0.974323731584;ESR1:0.963974128534;SPIB:0.963838909499;ARID5B:0.940836892667;IRF7:0.924062885646;RXR{A,B,G}_{NR1H2,PPAR}dimers:0.903549587152;ELF1,2,4:0.839050255176;NANOG{mouse}:0.736334475814;ETS1,2:0.728538359403;STAT2,4,6:0.712338982228;FOXQ1:0.705013536282;DMAP1_NCOR{1,2}_SMARC:0.657259611474;PAX5:0.644088873426;IRF1,2:0.622159272088;HMGA1,2:0.618396681729;RORA:0.57398263714;VSX1,2:0.571392552307;TFCP2:0.498395826881;FOXA2:0.459014829995;TGIF1:0.450792903727;FOXD3:0.448514091;XBP1:0.416030673934;MYOD1:0.404899032755;GLI1..3:0.393327617044;PPARG:0.382075540085;NKX3-2:0.368624009939;NFIL3:0.36438024374;STAT5{A,B}:0.335250349169;FOXP1:0.311157686113;AR:0.300358084561;PAX2:0.292989283993;IKZF2:0.28859457944;CDX1,2,4:0.285595618371;EP300:0.278121844594;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:0.240187731005;ZBTB16:0.225471927166;OCT4_SOX2{dimer}:0.213134188814;CUX2:0.191714209884;RUNX1..3:0.191218141623;GATA6:0.184392965211;FOSL2:0.165522906162;HSF1,2:0.164414904896;PDX1:0.155668186209;NR5A1,2:0.139205557296;HLF:0.122102128554;SPZ1:0.10823543139;RFX2..5_RFXANK_RFXAP:0.104069015395;ATF2:0.0947292995903;NKX2-3_NKX2-5:0.0784570199452;FOXN1:0.0781834855027;HES1:0.0679316670172;NFE2:0.0369417917253;EGR1..3:0.029634940625;RXRA_VDR{dimer}:-0.00111561937574;ZNF148:-0.0129127682892;NFKB1_REL_RELA:-0.0172825000056;MYFfamily:-0.0254784010103;NKX6-1,2:-0.0288993646837;PAX6:-0.0292635002548;LMO2:-0.0453517292497;HNF4A_NR2F1,2:-0.0608951608276;FOX{D1,D2}:-0.0673708902892;POU6F1:-0.074508894796;ATF5_CREB3:-0.0806663376385;HOXA9_MEIS1:-0.0882713735158;POU5F1:-0.0920289824695;NHLH1,2:-0.0988655873497;PRRX1,2:-0.114062815845;SP1:-0.116823025507;MYBL2:-0.119132197313;XCPE1{core}:-0.130246312541;ZFP161:-0.131431819109;TFAP4:-0.139219672728;HAND1,2:-0.143897829826;FOX{F1,F2,J1}:-0.148631912274;PAX8:-0.158907508137;POU1F1:-0.161513348455;SMAD1..7,9:-0.167302022927;BPTF:-0.167319068268;CRX:-0.187299134818;MYB:-0.192590369852;YY1:-0.199283282667;SOX2:-0.201134558484;GZF1:-0.211939693958;ZEB1:-0.221992733306;NR3C1:-0.227221370543;HNF1A:-0.245108014923;MTF1:-0.248730801688;HOX{A6,A7,B6,B7}:-0.265131141001;NFE2L1:-0.269665049989;SRF:-0.282573208846;MAFB:-0.287357802201;PAX3,7:-0.301608128712;ELK1,4_GABP{A,B1}:-0.309655324471;HBP1_HMGB_SSRP1_UBTF:-0.319408889366;PAX1,9:-0.324530888405;MEF2{A,B,C,D}:-0.344244289006;POU3F1..4:-0.351099688172;SOX5:-0.356371665176;FOS_FOS{B,L1}_JUN{B,D}:-0.361272381398;LHX3,4:-0.362692289283;TFAP2B:-0.370186662049;ONECUT1,2:-0.373244677695;MTE{core}:-0.389689526432;TFAP2{A,C}:-0.394936018636;BACH2:-0.406785623779;FOXO1,3,4:-0.429332399603;HOX{A4,D4}:-0.445650908321;HIC1:-0.450894734892;CEBPA,B_DDIT3:-0.456024442878;SNAI1..3:-0.483390367891;GFI1B:-0.507646131202;TAL1_TCF{3,4,12}:-0.510069379162;NRF1:-0.515554633568;GTF2A1,2:-0.56036306019;PRDM1:-0.581572581525;NANOG:-0.609996581444;GCM1,2:-0.615940144719;ZBTB6:-0.616393687359;AHR_ARNT_ARNT2:-0.649056844911;NFIX:-0.65377084208;MED-1{core}:-0.662130758027;MAZ:-0.666004367797;ZNF143:-0.667118965765;FOX{I1,J2}:-0.684913775539;TBP:-0.700140165199;ATF4:-0.704471401157;EVI1:-0.706885388281;EBF1:-0.707482592551;AIRE:-0.733373977102;KLF4:-0.743680653663;UFEwm:-0.750007128434;CDC5L:-0.772111199564;REST:-0.773217049123;NFY{A,B,C}:-0.77803549992;FOXM1:-0.798679647985;ADNP_IRX_SIX_ZHX:-0.809836230884;PAX4:-0.824930824334;bHLH_family:-0.829632916635;PITX1..3:-0.832408114136;TFDP1:-0.874972499834;TOPORS:-0.895572475253;TP53:-0.899453697118;HIF1A:-0.91318138551;TEAD1:-0.919416399451;GTF2I:-0.949472639664;NR1H4:-0.959938249846;ZNF423:-0.968331833258;GATA4:-0.972193488998;SOX17:-0.975387932599;TEF:-0.976608548291;JUN:-0.976664062378;GFI1:-0.982786214054;RREB1:-1.00837098826;FOXL1:-1.09192060496;POU2F1..3:-1.09448166621;BREu{core}:-1.11137078001;TLX1..3_NFIC{dimer}:-1.11393140738;ATF6:-1.13025192124;ALX4:-1.13211728517;IKZF1:-1.13266280313;NKX3-1:-1.1451067359;E2F1..5:-1.15767091644;HMX1:-1.16515476868;SOX{8,9,10}:-1.18000853223;ZNF384:-1.19302966715;DBP:-1.20667454673;T:-1.24504535026;CREB1:-1.28010229065;PATZ1:-1.31004290146;RXR{A,B,G}:-1.33199084054;NFATC1..3:-1.39421165849;RFX1:-1.44999135962;LEF1_TCF7_TCF7L1,2:-1.45097819166;ZIC1..3:-1.46536241264;HOX{A5,B5}:-1.51804962583;PBX1:-1.53589400711;ZNF238:-1.58302468914;MZF1:-1.7313414347;TBX4,5:-1.96646793899;RBPJ:-2.01683654105;NKX2-1,4:-2.31050365385 | |top_motifs=TLX2:2.42905157399;FOXP3:2.19919098602;SREBF1,2:1.98257064089;ALX1:1.64783035022;STAT1,3:1.35447147848;NKX2-2,8:1.30050096021;SPI1:1.20150641088;NR6A1:1.18809693347;NFE2L2:1.10158960343;ESRRA:1.10037007521;EN1,2:0.974323731584;ESR1:0.963974128534;SPIB:0.963838909499;ARID5B:0.940836892667;IRF7:0.924062885646;RXR{A,B,G}_{NR1H2,PPAR}dimers:0.903549587152;ELF1,2,4:0.839050255176;NANOG{mouse}:0.736334475814;ETS1,2:0.728538359403;STAT2,4,6:0.712338982228;FOXQ1:0.705013536282;DMAP1_NCOR{1,2}_SMARC:0.657259611474;PAX5:0.644088873426;IRF1,2:0.622159272088;HMGA1,2:0.618396681729;RORA:0.57398263714;VSX1,2:0.571392552307;TFCP2:0.498395826881;FOXA2:0.459014829995;TGIF1:0.450792903727;FOXD3:0.448514091;XBP1:0.416030673934;MYOD1:0.404899032755;GLI1..3:0.393327617044;PPARG:0.382075540085;NKX3-2:0.368624009939;NFIL3:0.36438024374;STAT5{A,B}:0.335250349169;FOXP1:0.311157686113;AR:0.300358084561;PAX2:0.292989283993;IKZF2:0.28859457944;CDX1,2,4:0.285595618371;EP300:0.278121844594;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:0.240187731005;ZBTB16:0.225471927166;OCT4_SOX2{dimer}:0.213134188814;CUX2:0.191714209884;RUNX1..3:0.191218141623;GATA6:0.184392965211;FOSL2:0.165522906162;HSF1,2:0.164414904896;PDX1:0.155668186209;NR5A1,2:0.139205557296;HLF:0.122102128554;SPZ1:0.10823543139;RFX2..5_RFXANK_RFXAP:0.104069015395;ATF2:0.0947292995903;NKX2-3_NKX2-5:0.0784570199452;FOXN1:0.0781834855027;HES1:0.0679316670172;NFE2:0.0369417917253;EGR1..3:0.029634940625;RXRA_VDR{dimer}:-0.00111561937574;ZNF148:-0.0129127682892;NFKB1_REL_RELA:-0.0172825000056;MYFfamily:-0.0254784010103;NKX6-1,2:-0.0288993646837;PAX6:-0.0292635002548;LMO2:-0.0453517292497;HNF4A_NR2F1,2:-0.0608951608276;FOX{D1,D2}:-0.0673708902892;POU6F1:-0.074508894796;ATF5_CREB3:-0.0806663376385;HOXA9_MEIS1:-0.0882713735158;POU5F1:-0.0920289824695;NHLH1,2:-0.0988655873497;PRRX1,2:-0.114062815845;SP1:-0.116823025507;MYBL2:-0.119132197313;XCPE1{core}:-0.130246312541;ZFP161:-0.131431819109;TFAP4:-0.139219672728;HAND1,2:-0.143897829826;FOX{F1,F2,J1}:-0.148631912274;PAX8:-0.158907508137;POU1F1:-0.161513348455;SMAD1..7,9:-0.167302022927;BPTF:-0.167319068268;CRX:-0.187299134818;MYB:-0.192590369852;YY1:-0.199283282667;SOX2:-0.201134558484;GZF1:-0.211939693958;ZEB1:-0.221992733306;NR3C1:-0.227221370543;HNF1A:-0.245108014923;MTF1:-0.248730801688;HOX{A6,A7,B6,B7}:-0.265131141001;NFE2L1:-0.269665049989;SRF:-0.282573208846;MAFB:-0.287357802201;PAX3,7:-0.301608128712;ELK1,4_GABP{A,B1}:-0.309655324471;HBP1_HMGB_SSRP1_UBTF:-0.319408889366;PAX1,9:-0.324530888405;MEF2{A,B,C,D}:-0.344244289006;POU3F1..4:-0.351099688172;SOX5:-0.356371665176;FOS_FOS{B,L1}_JUN{B,D}:-0.361272381398;LHX3,4:-0.362692289283;TFAP2B:-0.370186662049;ONECUT1,2:-0.373244677695;MTE{core}:-0.389689526432;TFAP2{A,C}:-0.394936018636;BACH2:-0.406785623779;FOXO1,3,4:-0.429332399603;HOX{A4,D4}:-0.445650908321;HIC1:-0.450894734892;CEBPA,B_DDIT3:-0.456024442878;SNAI1..3:-0.483390367891;GFI1B:-0.507646131202;TAL1_TCF{3,4,12}:-0.510069379162;NRF1:-0.515554633568;GTF2A1,2:-0.56036306019;PRDM1:-0.581572581525;NANOG:-0.609996581444;GCM1,2:-0.615940144719;ZBTB6:-0.616393687359;AHR_ARNT_ARNT2:-0.649056844911;NFIX:-0.65377084208;MED-1{core}:-0.662130758027;MAZ:-0.666004367797;ZNF143:-0.667118965765;FOX{I1,J2}:-0.684913775539;TBP:-0.700140165199;ATF4:-0.704471401157;EVI1:-0.706885388281;EBF1:-0.707482592551;AIRE:-0.733373977102;KLF4:-0.743680653663;UFEwm:-0.750007128434;CDC5L:-0.772111199564;REST:-0.773217049123;NFY{A,B,C}:-0.77803549992;FOXM1:-0.798679647985;ADNP_IRX_SIX_ZHX:-0.809836230884;PAX4:-0.824930824334;bHLH_family:-0.829632916635;PITX1..3:-0.832408114136;TFDP1:-0.874972499834;TOPORS:-0.895572475253;TP53:-0.899453697118;HIF1A:-0.91318138551;TEAD1:-0.919416399451;GTF2I:-0.949472639664;NR1H4:-0.959938249846;ZNF423:-0.968331833258;GATA4:-0.972193488998;SOX17:-0.975387932599;TEF:-0.976608548291;JUN:-0.976664062378;GFI1:-0.982786214054;RREB1:-1.00837098826;FOXL1:-1.09192060496;POU2F1..3:-1.09448166621;BREu{core}:-1.11137078001;TLX1..3_NFIC{dimer}:-1.11393140738;ATF6:-1.13025192124;ALX4:-1.13211728517;IKZF1:-1.13266280313;NKX3-1:-1.1451067359;E2F1..5:-1.15767091644;HMX1:-1.16515476868;SOX{8,9,10}:-1.18000853223;ZNF384:-1.19302966715;DBP:-1.20667454673;T:-1.24504535026;CREB1:-1.28010229065;PATZ1:-1.31004290146;RXR{A,B,G}:-1.33199084054;NFATC1..3:-1.39421165849;RFX1:-1.44999135962;LEF1_TCF7_TCF7L1,2:-1.45097819166;ZIC1..3:-1.46536241264;HOX{A5,B5}:-1.51804962583;PBX1:-1.53589400711;ZNF238:-1.58302468914;MZF1:-1.7313414347;TBX4,5:-1.96646793899;RBPJ:-2.01683654105;NKX2-1,4:-2.31050365385 | ||
|xref= | |xref= | ||
|zenbu_report=https://fantom.gsc.riken.jp/zenbu/reports/#miRNA_expression_atlas_human;search_select_hide=table111:FF:11227-116C3;search_select_hide=table117:FF:11227-116C3 | |||
}} | }} | ||
Latest revision as of 16:25, 3 June 2020
| Name: | Dendritic Cells - monocyte immature derived, donor1 |
|---|---|
| Species: | Human (Homo sapiens) |
| Library ID: | CNhs10855,CNhs11062 |
| Sample type: | primary cells |
| Genomic View: | UCSC |
| RefEX: | Specific genes |
| FANTOM CAT: | 1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 13 |
| CAGEd-oPOSSUM: | link |
| ZENBU report : | link |
| Additional information | ||||||||||||||||||||||||||||
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Sample information
RNA information
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| CAGE Accession numbers | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
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| Download raw sequence, BAM & CTSS | ||||||||||||||
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| RNA-Seq Accession numbers | ||||||||||||||||||||||||||||||||
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Relative expression to median (log10)
Transcription factors with enriched expression in this sampleRanked list of transcription factor promoter expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.
Co-expression clusters with enriched expression in this sampleRanked list of co-expression cluster expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed. <br>Analyst:NA <br><br>link to dataset.<br>data
Repeat families with enriched expression in this sample<b>Summary:</b>Ranked list of repeat family expression in this sample relative tothe median expression in the FANTOM5 collection is shown. Value is log10transformed.<br><b>Analyst:</b>NA<br><br>link to dataset.<br>data
TFBS(DNA)motifs over-represented in proximal region of promoters active in this sample
JASPAR motifs<b>Summary:</b>Association of JASPAR motif to the promoter expression in thissample. Pearson's correlation between the number of TFBSs estimated byusing the position-weight matrix for each promoter and its expression isexpressed as Z-score by taking the ones based on random position-weightmatrix, and the tail probability of the normal distribution correspondingto the Z-score is taken as the resulting P-value. Lower P-value indicatesmore (non-random) association of the motif to promoter expression<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data
library id: CNhs10855
library id: CNhs11062
FANTOM5 phase1 novel unique motifs<b>Summary:</b>Association of the 169 novel and unique motifs discovered in FANTOM5 phase1 in this sample. Among the de-novo motifs discovered by DMF, HOMER,ChIPMunk, and ScanAll, only novel motifs are selected after comparison with known motif sets, and their clustering based on MACRO-APE resulted in169 novel and unique motifs. Their association to the promoter expression is evaluated in the same way to the JASPAR motif above<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data
library id: CNhs10855
| Novel motif | Logo | P-value |
|---|---|---|
| 1 | 1 | 0.017 |
| 10 | 10 | 0.0249 |
| 100 | 100 | 0.966 |
| 101 | 101 | 0.197 |
| 102 | 102 | 0.58 |
| 103 | 103 | 0.0877 |
| 104 | 104 | 0.377 |
| 105 | 105 | 0.899 |
| 106 | 106 | 0.0163 |
| 107 | 107 | 0.298 |
| 108 | 108 | 0.885 |
| 109 | 109 | 0.0155 |
| 11 | 11 | 0.0712 |
| 110 | 110 | 0.188 |
| 111 | 111 | 0.0111 |
| 112 | 112 | 0.0322 |
| 113 | 113 | 0.813 |
| 114 | 114 | 8.74896e-4 |
| 115 | 115 | 0.0659 |
| 116 | 116 | 0.465 |
| 117 | 117 | 0.0426 |
| 118 | 118 | 0.479 |
| 119 | 119 | 0.025 |
| 12 | 12 | 0.579 |
| 120 | 120 | 0.347 |
| 121 | 121 | 0.765 |
| 122 | 122 | 0.32 |
| 123 | 123 | 0.313 |
| 124 | 124 | 0.396 |
| 125 | 125 | 0.536 |
| 126 | 126 | 0.327 |
| 127 | 127 | 0.227 |
| 128 | 128 | 0.0382 |
| 129 | 129 | 0.758 |
| 13 | 13 | 0.0938 |
| 130 | 130 | 0.885 |
| 131 | 131 | 0.993 |
| 132 | 132 | 0.746 |
| 133 | 133 | 0.817 |
| 134 | 134 | 0.868 |
| 135 | 135 | 0.0142 |
| 136 | 136 | 0.384 |
| 137 | 137 | 0.0481 |
| 138 | 138 | 0.504 |
| 139 | 139 | 0.0088 |
| 14 | 14 | 0.303 |
| 140 | 140 | 0.0957 |
| 141 | 141 | 0.781 |
| 142 | 142 | 0.145 |
| 143 | 143 | 0.137 |
| 144 | 144 | 0.828 |
| 145 | 145 | 0.403 |
| 146 | 146 | 0.568 |
| 147 | 147 | 0.383 |
| 148 | 148 | 0.0154 |
| 149 | 149 | 0.321 |
| 15 | 15 | 0.112 |
| 150 | 150 | 0.495 |
| 151 | 151 | 0.477 |
| 152 | 152 | 0.0844 |
| 153 | 153 | 0.213 |
| 154 | 154 | 0.964 |
| 155 | 155 | 0.233 |
| 156 | 156 | 0.947 |
| 157 | 157 | 0.789 |
| 158 | 158 | 0.98 |
| 159 | 159 | 0.186 |
| 16 | 16 | 0.265 |
| 160 | 160 | 0.78 |
| 161 | 161 | 0.158 |
| 162 | 162 | 0.58 |
| 163 | 163 | 0.434 |
| 164 | 164 | 0.0976 |
| 165 | 165 | 0.464 |
| 166 | 166 | 0.481 |
| 167 | 167 | 0.384 |
| 168 | 168 | 0.816 |
| 169 | 169 | 0.00573 |
| 17 | 17 | 0.184 |
| 18 | 18 | 0.336 |
| 19 | 19 | 0.235 |
| 2 | 2 | 0.808 |
| 20 | 20 | 0.864 |
| 21 | 21 | 0.273 |
| 22 | 22 | 0.176 |
| 23 | 23 | 0.206 |
| 24 | 24 | 0.031 |
| 25 | 25 | 0.619 |
| 26 | 26 | 0.173 |
| 27 | 27 | 0.235 |
| 28 | 28 | 0.72 |
| 29 | 29 | 0.41 |
| 3 | 3 | 0.022 |
| 30 | 30 | 0.769 |
| 31 | 31 | 0.627 |
| 32 | 32 | 0.885 |
| 33 | 33 | 0.2 |
| 34 | 34 | 0.402 |
| 35 | 35 | 0.79 |
| 36 | 36 | 0.158 |
| 37 | 37 | 0.078 |
| 38 | 38 | 0.216 |
| 39 | 39 | 0.638 |
| 4 | 4 | 0.768 |
| 40 | 40 | 0.146 |
| 41 | 41 | 0.46 |
| 42 | 42 | 0.361 |
| 43 | 43 | 0.0902 |
| 44 | 44 | 0.0112 |
| 45 | 45 | 0.866 |
| 46 | 46 | 0.191 |
| 47 | 47 | 0.155 |
| 48 | 48 | 0.207 |
| 49 | 49 | 0.176 |
| 5 | 5 | 0.266 |
| 50 | 50 | 0.935 |
| 51 | 51 | 0.649 |
| 52 | 52 | 0.162 |
| 53 | 53 | 0.504 |
| 54 | 54 | 0.35 |
| 55 | 55 | 0.0698 |
| 56 | 56 | 0.668 |
| 57 | 57 | 0.438 |
| 58 | 58 | 0.135 |
| 59 | 59 | 0.188 |
| 6 | 6 | 0.738 |
| 60 | 60 | 0.0612 |
| 61 | 61 | 0.334 |
| 62 | 62 | 0.0831 |
| 63 | 63 | 0.436 |
| 64 | 64 | 0.297 |
| 65 | 65 | 0.152 |
| 66 | 66 | 0.973 |
| 67 | 67 | 0.292 |
| 68 | 68 | 0.949 |
| 69 | 69 | 0.603 |
| 7 | 7 | 0.21 |
| 70 | 70 | 0.0362 |
| 71 | 71 | 0.0767 |
| 72 | 72 | 0.234 |
| 73 | 73 | 0.0113 |
| 74 | 74 | 0.511 |
| 75 | 75 | 0.0335 |
| 76 | 76 | 0.35 |
| 77 | 77 | 0.28 |
| 78 | 78 | 0.0125 |
| 79 | 79 | 0.884 |
| 8 | 8 | 0.111 |
| 80 | 80 | 0.382 |
| 81 | 81 | 0.129 |
| 82 | 82 | 0.124 |
| 83 | 83 | 0.643 |
| 84 | 84 | 0.468 |
| 85 | 85 | 0.0468 |
| 86 | 86 | 0.0843 |
| 87 | 87 | 0.0719 |
| 88 | 88 | 0.205 |
| 89 | 89 | 0.0858 |
| 9 | 9 | 0.376 |
| 90 | 90 | 0.0155 |
| 91 | 91 | 0.709 |
| 92 | 92 | 0.113 |
| 93 | 93 | 0.775 |
| 94 | 94 | 0.0433 |
| 95 | 95 | 0.307 |
| 96 | 96 | 0.123 |
| 97 | 97 | 0.946 |
| 98 | 98 | 0.144 |
| 99 | 99 | 0.982 |
library id: CNhs11062
| Novel motif | Logo | P-value |
|---|---|---|
| 1 | 1 | 0.0152 |
| 10 | 10 | 0.0238 |
| 100 | 100 | 0.923 |
| 101 | 101 | 0.203 |
| 102 | 102 | 0.595 |
| 103 | 103 | 0.0354 |
| 104 | 104 | 0.277 |
| 105 | 105 | 0.999 |
| 106 | 106 | 0.0159 |
| 107 | 107 | 0.242 |
| 108 | 108 | 0.898 |
| 109 | 109 | 0.0295 |
| 11 | 11 | 0.11 |
| 110 | 110 | 0.233 |
| 111 | 111 | 0.0166 |
| 112 | 112 | 0.0292 |
| 113 | 113 | 0.695 |
| 114 | 114 | 0.0025 |
| 115 | 115 | 0.106 |
| 116 | 116 | 0.547 |
| 117 | 117 | 0.0472 |
| 118 | 118 | 0.621 |
| 119 | 119 | 0.0243 |
| 12 | 12 | 0.537 |
| 120 | 120 | 0.42 |
| 121 | 121 | 0.78 |
| 122 | 122 | 0.245 |
| 123 | 123 | 0.244 |
| 124 | 124 | 0.413 |
| 125 | 125 | 0.548 |
| 126 | 126 | 0.388 |
| 127 | 127 | 0.135 |
| 128 | 128 | 0.0694 |
| 129 | 129 | 0.522 |
| 13 | 13 | 0.1 |
| 130 | 130 | 0.854 |
| 131 | 131 | 0.978 |
| 132 | 132 | 0.823 |
| 133 | 133 | 0.974 |
| 134 | 134 | 0.72 |
| 135 | 135 | 0.00336 |
| 136 | 136 | 0.34 |
| 137 | 137 | 0.0313 |
| 138 | 138 | 0.475 |
| 139 | 139 | 0.0202 |
| 14 | 14 | 0.312 |
| 140 | 140 | 0.101 |
| 141 | 141 | 0.86 |
| 142 | 142 | 0.153 |
| 143 | 143 | 0.0653 |
| 144 | 144 | 0.896 |
| 145 | 145 | 0.404 |
| 146 | 146 | 0.651 |
| 147 | 147 | 0.233 |
| 148 | 148 | 0.0108 |
| 149 | 149 | 0.36 |
| 15 | 15 | 0.157 |
| 150 | 150 | 0.485 |
| 151 | 151 | 0.569 |
| 152 | 152 | 0.092 |
| 153 | 153 | 0.175 |
| 154 | 154 | 0.793 |
| 155 | 155 | 0.269 |
| 156 | 156 | 0.965 |
| 157 | 157 | 0.972 |
| 158 | 158 | 0.92 |
| 159 | 159 | 0.256 |
| 16 | 16 | 0.273 |
| 160 | 160 | 0.72 |
| 161 | 161 | 0.164 |
| 162 | 162 | 0.634 |
| 163 | 163 | 0.51 |
| 164 | 164 | 0.0756 |
| 165 | 165 | 0.266 |
| 166 | 166 | 0.353 |
| 167 | 167 | 0.494 |
| 168 | 168 | 0.97 |
| 169 | 169 | 0.0104 |
| 17 | 17 | 0.217 |
| 18 | 18 | 0.478 |
| 19 | 19 | 0.206 |
| 2 | 2 | 0.97 |
| 20 | 20 | 0.69 |
| 21 | 21 | 0.258 |
| 22 | 22 | 0.182 |
| 23 | 23 | 0.203 |
| 24 | 24 | 0.0151 |
| 25 | 25 | 0.619 |
| 26 | 26 | 0.112 |
| 27 | 27 | 0.189 |
| 28 | 28 | 0.716 |
| 29 | 29 | 0.483 |
| 3 | 3 | 0.0252 |
| 30 | 30 | 0.846 |
| 31 | 31 | 0.54 |
| 32 | 32 | 0.712 |
| 33 | 33 | 0.286 |
| 34 | 34 | 0.367 |
| 35 | 35 | 0.941 |
| 36 | 36 | 0.175 |
| 37 | 37 | 0.113 |
| 38 | 38 | 0.243 |
| 39 | 39 | 0.657 |
| 4 | 4 | 0.905 |
| 40 | 40 | 0.154 |
| 41 | 41 | 0.416 |
| 42 | 42 | 0.345 |
| 43 | 43 | 0.0751 |
| 44 | 44 | 0.00322 |
| 45 | 45 | 0.818 |
| 46 | 46 | 0.164 |
| 47 | 47 | 0.276 |
| 48 | 48 | 0.282 |
| 49 | 49 | 0.172 |
| 5 | 5 | 0.364 |
| 50 | 50 | 0.947 |
| 51 | 51 | 0.558 |
| 52 | 52 | 0.181 |
| 53 | 53 | 0.475 |
| 54 | 54 | 0.3 |
| 55 | 55 | 0.0772 |
| 56 | 56 | 0.662 |
| 57 | 57 | 0.489 |
| 58 | 58 | 0.106 |
| 59 | 59 | 0.123 |
| 6 | 6 | 0.736 |
| 60 | 60 | 0.111 |
| 61 | 61 | 0.303 |
| 62 | 62 | 0.0778 |
| 63 | 63 | 0.444 |
| 64 | 64 | 0.336 |
| 65 | 65 | 0.173 |
| 66 | 66 | 0.882 |
| 67 | 67 | 0.283 |
| 68 | 68 | 0.956 |
| 69 | 69 | 0.522 |
| 7 | 7 | 0.286 |
| 70 | 70 | 0.0551 |
| 71 | 71 | 0.0667 |
| 72 | 72 | 0.258 |
| 73 | 73 | 0.0245 |
| 74 | 74 | 0.826 |
| 75 | 75 | 0.0374 |
| 76 | 76 | 0.431 |
| 77 | 77 | 0.216 |
| 78 | 78 | 0.0163 |
| 79 | 79 | 0.851 |
| 8 | 8 | 0.137 |
| 80 | 80 | 0.139 |
| 81 | 81 | 0.115 |
| 82 | 82 | 0.0386 |
| 83 | 83 | 0.623 |
| 84 | 84 | 0.581 |
| 85 | 85 | 0.0465 |
| 86 | 86 | 0.0781 |
| 87 | 87 | 0.0672 |
| 88 | 88 | 0.193 |
| 89 | 89 | 0.122 |
| 9 | 9 | 0.289 |
| 90 | 90 | 0.021 |
| 91 | 91 | 0.676 |
| 92 | 92 | 0.249 |
| 93 | 93 | 0.657 |
| 94 | 94 | 0.0577 |
| 95 | 95 | 0.302 |
| 96 | 96 | 0.121 |
| 97 | 97 | 0.998 |
| 98 | 98 | 0.151 |
| 99 | 99 | 0.926 |
de novo motifs identified by HOMER in promoters active in this sample<b>Summary:</b>The result of HOMER in this sample is shown.<br><b>Analyst:</b>NA <br>
library id: CNhs10855
library id: CNhs11062
FANTOM5 (FF) ontology
Direct parent terms
is_a relathionship
EFO:0002091 biological replicate
FF:0000044 human monocyte immature derived dendritic cell sample
Ancestor terms (non development)<b>Summary:</b>Connected ontology terms with is_a, part_of or located_in relationship <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source data<br>data
CL: Cell type
0000000 (cell), 0000000 (cell)
0000003 (native cell)
0000988 (hematopoietic cell)
0000548 (animal cell)
0002371 (somatic cell)
0000219 (motile cell)
0000738 (leukocyte)
0000990 (conventional dendritic cell)
0000255 (eukaryotic cell)
0000451 (dendritic cell)
0000840 (immature conventional dendritic cell)
FF: FANTOM5
0000102 (sample by type)
0000210 (human sample)
0000002 (in vivo cell sample)
0000101 (sample by species)
0000001 (sample)
0000044 (human monocyte immature derived dendritic cell sample)
Ancestor terms (development)<b>Summary:</b>Connected ontology terms with develops_from, derives_from or preceded_by relationship <br><b>Analyst:</b> Hideya Kawaji <br><br>link to source data<br>data
CL:0000049 (common myeloid progenitor)
CL:0000134 (mesenchymal cell)
