FF:11541-120B2: Difference between revisions

Latest revision as of 18:07, 4 June 2020

Name:	Smooth Muscle Cells - Umbilical Vein, donor1
Species:	Human (Homo sapiens)
Library ID:	CNhs12597
Sample type:	primary cells
Genomic View:	UCSC
RefEX:	Specific genes
FANTOM CAT:	1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12
CAGEd-oPOSSUM:	link
ZENBU report :	link

Additional information

Sample information

strain	NA
tissue	umbilical vein
dev stage	NA
sex	NA
age	NA
cell type	smooth muscle cell
cell line	NA
company	Sciencell/3H
collaboration	FANTOM5 OSC CORE (contact: Al Forrest)
External link for information	[{{{sample_info_link}}} {{{sample_info_link}}}]

RNA information

lot number	NA
catalog number	SC8025
sample type	total RNA
extraction protocol (Details)	OP-RNA-extraction-totalRNA-TRIzol-isopropanol-v1.0

CAGE Accession numbers

Method		Sample accession id
CAGE		SAMD00005129

Library accession numbers

Library id		Method		Exp. accession id		Run accession id
CNhs12597		CAGE		DRX008510		DRR009382

Accession ID Hg19

Library id		BAM		CTSS
CNhs12597		DRZ000807		DRZ002192

Accession ID Hg38

Library id		BAM		CTSS
CNhs12597		DRZ012157		DRZ013542

Download raw sequence, BAM & CTSS

Hg19

Fasta	BAM	CTSS
download	download	donwload

Hg38

BAM	CTSS
download	donwload

Relative expression to median (log10)

Transcription factors with enriched expression in this sampleRanked list of transcription factor promoter expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.

Co-expression clusters with enriched expression in this sampleRanked list of co-expression cluster expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed. Analyst:NA link to dataset. data

Coexpression cluster	score
C0-CD14-Eosinophils-Neutrophils-Basophils-CD34-immature-Peripheral	0
C1-testis-epididymis-embryonic-medulla-pituitary-trachea-caudate	0
C10-occipital-temporal-parietal-brain-duodenum-Neurons-Neural	0
C100-rhabdomyosarcoma-gastric-pineal-Wilms-cervical-mesodermal-endometrial	0
C101-small-cerebellum-maxillary-colon-parietal-epididymis-merkel	0
C102-neuroblastoma-testicular-pituitary-carcinosarcoma-rectum-acantholytic-iPS	0
C103-CD4-CD8-Natural-Peripheral-Whole-Neutrophils-Basophils	0
C104-Mast-Basophils-immature-CD14-CD34-eye-Natural	0
C105-heart-skeletal-occipital-hippocampus-acute-Sebocyte-penis	-0.155
C106-Hep2-epitheloid-placenta-cervical-rectal-anaplastic-glassy	0
C107-Neutrophils-CD14-Eosinophils-Monocytederived-Whole-Peripheral-blood	0
C108-breast-hepatoblastoma-MCF7-parotid-salivary-submaxillary-prostate	0
C109-Reticulocytes-non-acute-Hodgkin-Burkitt-retinoblastoma-lymphoma	0.45
C11-cerebellum-medulla-pons-parietal-occipital-middle-medial	0
C110-leukemia-chronic-Eosinophils-acute-Whole-CD34-Lymphatic	0
C111-medulla-lung-trachea-testis-caudate-epididymis-throat	0
C112-gastric-pancreas-temporal-duodenum-small-extraskeletal-adrenal	0
C113-thyroid-throat-lung-lymph-small-colon-trachea	0
C114-teratocarcinoma-medulloblastoma-carcinosarcoma-iPS-anaplastic-acute-neuroblastoma	0
C115-pituitary-Neural-caudate-putamen-amygdala-medulla-hippocampus	0
C116-myeloma-xeroderma-tonsil-CD19-spleen-lymph-trachea	0
C117-serous-clear-kidney-neuroectodermal-mesothelioma-endometrial-Intestinal	0
C118-cerebellum-parietal-occipital-medial-middle-frontal-insula	0
C119-CD4-CD8-Natural-Neutrophils-CD14-Peripheral-CD19	0
C12-Mast-Basophils-immature-chorionic-mature-CD14-Eosinophils	0
C120-immature-salivary-tongue-skin-cervical-CD14-CD34	0
C121-NK-Natural-CD8-CD4-anaplastic-chronic-B	0
C122-chronic-Reticulocytes-skeletal-leukemia-acute-colon-Tracheal	0
C123-CD19-Natural-CD8-CD4-CD14-Peripheral-Basophils	0
C124-small-temporal-duodenum-colon-gall-signet-Hepatocyte	0
C125-mucinous-alveolar-mesothelioma-Smooth-lung-CD14-Nucleus	0
C126-gastrointestinal-argyrophil-smallcell-merkel-bile-insula-brain	0
C127-maxillary-small-hepatoblastoma-hepatocellular-alveolar-colon-argyrophil	0
C128-testicular-choriocarcinoma-H9-teratocarcinoma-pancreatic-iPS-HES3GFP	0
C129-liver-Hepatocyte-colon-duodenum-temporal-testicular-small	0
C13-Neutrophils-Eosinophils-CD14-Monocytederived-Whole-Peripheral-CD4	0
C130-iPS-HES3GFP-H9-teratocarcinoma-testicular-colon-Alveolar	0
C131-lung-trachea-Alveolar-thyroid-umbilical-throat-skin	0
C132-acute-small-Dendritic-Macrophage-CD14-Neutrophils-Monocytederived	0
C133-signet-gall-small-kidney-colon-ductal-adenocarcinoma	0
C134-skeletal-diaphragm-tongue-throat-Skeletal-skin-penis	0
C135-neuroblastoma-retinoblastoma-carcinoid-choriocarcinoma-testicular-acute-rectum	0
C136-Wilms-extraskeletal-anaplastic-rhabdomyosarcoma-cholangiocellular-nonsmall-neuroectodermal	0
C137-large-ductal-melanoma-cervical-Endothelial-Smooth-chronic	0
C138-diffuse-Burkitt-lymphangiectasia-lymphoma-acute-CD19-pineal	0
C139-astrocytoma-skin-salivary-gall-serous-Mallassezderived-renal	0
C14-Whole-blood-Reticulocytes-liver-Neutrophils-Eosinophils-spleen	0
C140-Renal-Endothelial-Hepatic-Lymphatic-heart-lung-spleen	0
C141-Hodgkin-acute-thymus-chronic-vein-CD4-B	0
C142-Preadipocyte-Fibroblast-hepatic-Ewing-Adipocyte-Olfactory-Hair	0.155
C143-Monocytederived-CD14-Macrophage-Dendritic-Basophils-CD14CD16-Osteoblast	0
C144-CD4-tonsil-NK-appendix-CD8-splenic-mycosis	0
C145-neuroblastoma-peripheral-neuroectodermal-neuroepithelioma-carcinoid-adult-extraskeletal	0
C146-lymphangiectasia-lymphoma-gall-lymph-tonsil-gastric-transitionalcell	0
C147-Neutrophils-Eosinophils-CD4-CD14-CD8-Natural-Peripheral	0
C148-kidney-small-epididymis-pancreas-serous-duodenum-temporal	0
C149-occipital-medial-brain-amygdala-parietal-cerebral-cerebellum	0
C15-anaplastic-small-skeletal-neuroblastoma-parietal-temporal-tongue	0
C150-merkel-carcinoid-nonsmall-gastrointestinal-argyrophil-pineal-small	0
C151-CD14-Natural-Basophils-CD8-Eosinophils-CD4-Mast	0
C152-peripheral-neuroectodermal-neuroepithelioma-neuroblastoma-testicular-carcinoid-lung	0
C153-rhabdomyosarcoma-liposarcoma-pancreatic-somatostatinoma-Reticulocytes-lymphoma-testicular	0
C154-adenocarcinoma-Mesenchymal-Cardiac-small-sacrococcigeal-Smooth-Prostate	0
C155-pituitary-placenta-nonsmall-cervical-smallcell-choriocarcinoma-epitheloid	0
C156-plasma-splenic-hereditary-B-large-xeroderma-b	0
C157-testicular-H9-testis-iPS-teratocarcinoma-colon-trachea	0
C158-adrenal-gastric-temporal-parietal-duodenum-caudate-putamen	0
C159-choriocarcinoma-pancreatic-placenta-chorionic-testicular-bronchioalveolar-seminal	0
C16-medial-amygdala-occipital-parietal-olfactory-putamen-brain	0
C160-medulla-Hepatocyte-retina-corpus-liver-pineal-cerebral	0
C161-mesothelioma-Mesothelial-acute-mesenchymal-extraskeletal-renal-placenta	0
C162-spinal-locus-medulla-substantia-thalamus-globus-diencephalon	0
C163-Skeletal-skeletal-Pericytes-Hepatic-rhabdomyosarcoma-throat-mesenchymal	0
C164-signet-corpus-optic-mucinous-substantia-salivary-choriocarcinoma	0
C165-epithelioid-Adipocyte-mesothelioma-myxofibrosarcoma-lung-gastric-Mesothelial	0
C166-Macrophage-Monocytederived-Dendritic-adipose-lymph-CD14-lung	0
C167-Basophils-Mast-Eosinophils-Neutrophils-Peripheral-Whole-CD4	0
C168-Mast-CD14-immature-Basophils-Eosinophils-CD34-Peripheral	0
C169-hereditary-adult-gall-lymphangiectasia-chronic-b-choriocarcinoma	0
C17-Mast-CD14-Monocytederived-Lymphatic-Smooth-mesenchymal-Macrophage	0
C170-epitheloid-cervical-Hep2-keratoacanthoma-adult-neuroblastoma-signet	0
C171-merkel-neuroblastoma-pineal-retinoblastoma-carcinoid-small-eye	0
C172-chorionic-skeletal-tongue-amniotic-liver-gastrointestinal-Pericytes	0.0582
C173-Adipocyte-mature-skin-left-Hepatocyte-Osteoblast-adipose	0
C174-CD14-Neutrophils-Smooth-mesothelioma-embryonic-Monocytederived-Eosinophils	0
C175-Eosinophils-Neutrophils-CD4-Basophils-CD19-CD8-Natural	-0.0379
C176-Eosinophils-Neutrophils-Mast-CD14-CD4-Basophils-CD19	-0.104
C177-melanoma-Melanocyte-mesenchymal-retina-Mallassezderived-Gingival-squamous	0
C178-spleen-liver-Hepatocyte-b-lymph-vein-thymus	0
C179-CD19-Peripheral-lymphoma-blood-lymph-spleen-tonsil	0
C18-CD4-CD8-thymus-Whole-Peripheral-Natural-blood	0
C180-skeletal-heart-Hepatocyte-acute-occipital-hippocampus-middle	-0.413
C181-liposarcoma-somatostatinoma-neuroblastoma-mesothelioma-nonsmall-small-Alveolar	0
C182-renal-mature-mesothelioma-lung-Mammary-Adipocyte-acute	0
C183-acute-non-CD34-diffuse-CD133-myeloma-Burkitt	0
C184-somatostatinoma-smallcell-nonsmall-small-gastrointestinal-pineal-thyroid	0
C185-small-adrenal-gastric-Mesenchymal-acute-HES3GFP-testis	0
C186-squamous-papillotubular-large-Tracheal-oral-Small-epidermoid	0
C187-migratory-immature-Dendritic-CD19-CD14-Monocytederived-Macrophage	0
C188-left-heart-tongue-skeletal-Skeletal-diaphragm-throat	0
C189-b-splenic-tonsil-CD19-lymph-appendix-spleen	0
C19-embryonic-testis-cord-chronic-CD14-NK-mesothelioma	0
C190-colon-small-rectum-duodenum-appendix-temporal-oral	0
C191-leiomyoblastoma-Mast-parietal-acute-bone-neuroepithelioma-embryonic	0
C192-Neutrophils-CD14-Peripheral-Eosinophils-CD8-Natural-CD4	0
C193-Mesenchymal-Adipocyte-mature-Cardiac-heart-CD14CD16-CD14	0.0582
C194-MCF7-breast-prostate-Intestinal-diffuse-Wilms-Alveolar	0
C195-Small-Gingival-Bronchial-Smooth-mesenchymal-Urothelial-Tracheal	0
C196-testicular-iPS-H9-teratocarcinoma-HES3GFP-choriocarcinoma-endometrial	0
C197-tongue-esophagus-tonsil-salivary-cervix-nasal-Gingival	0
C198-Mesenchymal-Hair-Hepatic-Fibroblast-Smooth-tenocyte-Pericytes	0.115
C199-glioblastoma-B-osteosarcoma-Fibroblast-heart-rhabdomyosarcoma-myxofibrosarcoma	0
C2-Eosinophils-Neutrophils-CD14-Whole-Basophils-Peripheral-Mast	0
C20-heart-left-skeletal-diaphragm-tongue-umbilical-throat	0
C200-seminal-Cardiac-Smooth-Hair-submaxillary-Neutrophils-mixed	-0.142
C201-colon-small-adenocarcinoma-duodenum-temporal-signet-gall	0
C202-salivary-skin-penis-tongue-uterus-cervical-immature	0
C203-acute-NK-chronic-CD133-lymphoma-immature-Dendritic	0
C204-Smooth-nasal-CD4-CD19-CD8-CD14-CD34	0
C205-mycosis-cord-hairy-xeroderma-CD4-B-b	0
C206-melanoma-somatostatinoma-nonsmall-small-neuroblastoma-smallcell-pituitary	0
C207-Corneal-Keratinocyte-Esophageal-Mammary-Bronchial-Urothelial-Sebocyte	0
C208-skin-amniotic-papillotubular-salivary-umbilical-Alveolar-serous	0
C209-acute-myelodysplastic-CD34-granulocyte-CD133-liver-spleen	0
C21-cord-mycosis-hairy-xeroderma-adult-CD4-anaplastic	0
C210-Burkitt-lymphoma-appendix-acute-diffuse-CD19-tonsil	0
C211-small-Hepatocyte-liver-colon-temporal-duodenum-kidney	0
C212-chronic-acute-Whole-Reticulocytes-leukemia-blood-CD34	0
C213-CD14-Natural-CD8-CD4-Basophils-Eosinophils-Peripheral	0
C214-Neurons-Neural-duodenum-temporal-occipital-parietal-brain	0
C215-chronic-acute-peripheral-Hepatocyte-osteosarcoma-NK-immature	0
C216-osteosarcoma-Smooth-Mesenchymal-large-neuroectodermal-acute-CD34	0
C217-carcinoid-neuroectodermal-mature-mesodermal-colon-acute-occipital	0
C218-tonsil-lymph-CD19-spleen-colon-appendix-salivary	0
C219-nasal-Basophils-amniotic-Melanocyte-CD14-Osteoblast-duodenum	0
C22-CD4-CD8-Natural-Basophils-CD14-Peripheral-CD19	0
C220-Adipocyte-mature-left-breast-skin-liver-adipose	0
C221-alveolar-Osteoblast-Myoblast-mesenchymal-liposarcoma-Smooth-hepatocellular	0
C222-Melanocyte-Tracheal-Neutrophils-seminal-Smooth-Hair-Chondrocyte	-0.182
C223-Chondrocyte-basal-renal-Fibroblast-Smooth-spindle-Synoviocyte	0
C224-clear-serous-pleomorphic-choriocarcinoma-mesothelioma-amniotic-renal	0
C225-ductal-alveolar-giant-prostate-salivary-squamous-Tracheal	0
C226-Corneal-Keratinocyte-Esophageal-Urothelial-Mammary-Bronchial-Tracheal	0
C227-chorionic-amniotic-Mesenchymal-Placental-gastric-diaphragm-tongue	0.0582
C228-colon-Intestinal-Prostate-hepatoblastoma-hepatocellular-testis-adult	0
C229-Mesenchymal-CD4-Melanocyte-acute-skeletal-left-heart	0
C23-CD4-CD8-Natural-Peripheral-Basophils-CD19-CD14	0
C230-aorta-normal-heart-penis-osteosarcoma-basal-lung	0
C231-Mesothelial-mesenchymal-mesothelioma-Fibroblast-Preadipocyte-leiomyoma-mycosis	0
C232-teratocarcinoma-HES3GFP-H9-iPS-testicular-neuroblastoma-cerebellum	0
C233-uterus-cervix-ovary-epididymis-colon-rectum-MCF7	0
C234-oral-epidermoid-malignant-cervical-ductal-lung-keratoacanthoma	0
C235-Intestinal-Prostate-liver-colon-small-kidney-pancreas	0
C236-CD14-Neutrophils-Monocytederived-renal-Eosinophils-testis-mesothelioma	0
C237-acute-breast-testicular-hepatoblastoma-chronic-argyrophil-Bronchial	0
C238-stomach-gall-breast-duodenum-temporal-MCF7-smallcell	0
C239-CD4-lymphangiectasia-CD8-NK-mycosis-Renal-hairy	0
C24-pineal-eye-retina-retinoblastoma-medulloblastoma-small-cerebral	0
C240-Adipocyte-Preadipocyte-Osteoblast-Chondrocyte-tenocyte-Synoviocyte-mesenchymal	0
C241-Reticulocytes-chronic-Tracheal-Hodgkin-Endothelial-Hair-thymus	0.218
C242-acute-Chondrocyte-myelodysplastic-granulocyte-biphenotypic-Fibroblast-stomach	0
C243-Chondrocyte-trachea-Synoviocyte-mesodermal-renal-Fibroblast-Ewing	0
C244-CD14-Monocytederived-Hepatocyte-heart-Neutrophils-acute-Macrophage	0
C245-prostate-penis-salivary-esophagus-kidney-Neutrophils-Pancreatic	0
C246-Neutrophils-Eosinophils-Whole-CD14-CD14CD16-Basophils-migratory	-0.00307
C247-pons-locus-medulla-spinal-paracentral-medial-occipital	0
C248-iPS-Aortic-Hep2-amygdala-acute-medial-Myoblast	0.751
C249-nonsmall-small-smallcell-occipital-somatostatinoma-maxillary-medial	0
C25-small-colon-temporal-duodenum-liver-Hepatocyte-gall	0
C250-Mast-Neutrophils-CD14-Eosinophils-CD8-Peripheral-CD4	0
C251-gall-tonsil-trachea-CD14-salivary-throat-tongue	0
C252-hepatic-Olfactory-sacrococcigeal-leiomyoma-normal-Synoviocyte-glioblastoma	0
C253-spleen-rhabdomyosarcoma-Hepatocyte-small-uterus-liver-rectum	0
C254-prostate-rhabdomyosarcoma-seminal-Fibroblast-transitionalcell-Smooth-Iris	0
C255-Wilms-leiomyoblastoma-kidney-adrenal-MCF7-epithelioid-Mast	0
C256-occipital-caudate-amygdala-medial-thalamus-hippocampus-medulla	0
C257-pineal-insula-frontal-occipital-temporal-medial-paracentral	0
C258-hepatoblastoma-hepatocellular-signet-colon-Intestinal-Prostate-gastric	0
C259-Preadipocyte-Adipocyte-Fibroblast-Chondrocyte-tenocyte-normal-Ewing	0.0582
C26-Eosinophils-Neutrophils-CD14-CD14CD16-Basophils-Monocytederived-Whole	0
C260-acute-chronic-Natural-NK-Basophils-biphenotypic-blood	0
C261-locus-medial-parietal-pons-diencephalon-olfactory-spinal	0
C262-breast-MCF7-skeletal-Reticulocytes-mucinous-hepatoblastoma-Wilms	0
C263-cervical-keratoacanthoma-tongue-skin-esophagus-throat-tonsil	0
C264-giant-keratoacanthoma-colon-fibrosarcoma-HES3GFP-Hep2-acute	0
C265-CD4-Eosinophils-CD14-Natural-CD19-Basophils-CD8	-0.0274
C266-acute-chronic-leukemia-small-choriocarcinoma-hepatoma-Mast	0
C267-pancreatic-placenta-choriocarcinoma-testicular-teratocarcinoma-chorionic-clear	0
C268-Mallassezderived-Urothelial-Gingival-Small-Bronchial-Tracheal-Prostate	0
C269-Basophils-Mast-Eosinophils-mature-CD14-chorionic-CD4	0
C27-pancreas-temporal-duodenum-salivary-ductus-umbilical-lung	0
C270-CD4-Fibroblast-acute-iPS-Aortic-CD34-Smooth	0.539
C271-pineal-spinal-locus-globus-medulla-thalamus-cerebellum	0
C272-CD19-CD4-CD8-Whole-Peripheral-lymph-tonsil	0
C273-Neutrophils-CD14-Eosinophils-Monocytederived-CD4-Natural-Mast	0
C274-CD14-Mast-immature-Basophils-mature-vagina-Hepatocyte	0
C275-pons-medulla-cerebellum-locus-thalamus-diencephalon-spinal	0
C276-mesothelioma-kidney-renal-small-clear-cerebellum-Renal	0
C277-mesothelioma-epithelioid-thyroid-extraskeletal-alveolar-glioblastoma-adenocarcinoma	0
C278-amygdala-hippocampus-insula-medial-putamen-temporal-olfactory	0
C279-parietal-cerebellum-occipital-temporal-middle-duodenum-medial	0
C28-thymus-acute-vein-Hodgkin-chronic-throat-Dendritic	0
C280-Mast-Natural-CD19-CD8-Eosinophils-CD34-CD4	0
C281-Hodgkin-Reticulocytes-chronic-NK-acute-retinoblastoma-small	0.34
C282-acute-B-tonsil-CD19-submaxillary-lymph-throat	0
C283-tenocyte-Chondrocyte-mesenchymal-Macrophage-pleomorphic-Synoviocyte-cholangiocellular	0
C284-parietal-occipital-medial-temporal-olfactory-locus-hippocampus	0.157
C285-cervical-Hep2-small-colon-temporal-duodenum-bronchogenic	0
C286-cerebellum-occipital-optic-parietal-globus-caudate-medial	0
C287-Hepatocyte-Chondrocyte-Adipocyte-Synoviocyte-liver-tenocyte-mesenchymal	0
C288-Chondrocyte-Renal-Pericytes-Fibroblast-aorta-Smooth-Meningeal	0
C289-chorionic-skeletal-heart-Mast-amniotic-granulosa-left	0
C29-mature-adipose-Adipocyte-breast-Lymphatic-vein-heart	0
C290-Eosinophils-CD14-Basophils-Mast-CD4-CD8-immature	0
C291-spinal-substantia-retina-medulla-tongue-skeletal-trachea	0
C292-Mesenchymal-skin-umbilical-Adipocyte-mesenchymal-Chondrocyte-skeletal	0.235
C293-CD14-CD14CD16-Basophils-Peripheral-immature-Eosinophils-CD34	0
C294-CD14-Macrophage-Monocytederived-CD14CD16-Neutrophils-Basophils-Peripheral	0
C295-Fibroblast-Smooth-Myoblast-Chondrocyte-hepatic-Synoviocyte-Preadipocyte	0.0865
C296-gall-small-mesothelioma-acute-bronchioalveolar-epidermoid-mixed	0
C297-Eosinophils-CD4-Basophils-Natural-Neutrophils-CD8-Peripheral	0
C298-small-optic-substantia-thalamus-diencephalon-globus-occipital	0
C299-CD14CD16-Eosinophils-Neutrophils-CD14-Whole-Basophils-blood	0
C3-occipital-temporal-insula-medial-postcentral-frontal-amygdala	0
C30-thyroid-throat-mesothelioma-mucinous-trachea-chorionic-mesenchymal	0
C300-CD4-CD8-NK-Natural-blood-mycosis-Basophils	0
C301-Smooth-mesenchymal-Endothelial-Hepatic-basal-hepatic-chorionic	0.478
C302-acute-peripheral-Neutrophils-NK-myelodysplastic-CD34-carcinoid	0
C303-CD14-Basophils-Peripheral-Eosinophils-CD14CD16-Neutrophils-Whole	0
C305-heart-skeletal-smooth-left-bladder-penis-esophagus	0
C31-skeletal-tongue-diaphragm-throat-penis-skin-trachea	0
C32-middle-occipital-parietal-hippocampus-amygdala-medial-olfactory	0
C33-Reticulocytes-liver-Whole-blood-chronic-acute-spleen	0
C34-placenta-chorionic-choriocarcinoma-mesothelioma-Wilms-Smooth-bile	0
C35-caudate-putamen-diencephalon-nucleus-globus-thalamus-insula	0
C36-B-b-splenic-plasma-xeroderma-adrenal-Burkitt	0
C37-salivary-submaxillary-parotid-seminal-tongue-ductus-trachea	0
C38-extraskeletal-rhabdomyosarcoma-adrenal-rectal-mesothelioma-lung-Wilms	0
C39-epididymis-ductus-seminal-testis-acute-thyroid-CD133	0
C4-optic-corpus-substantia-medulla-spinal-thalamus-globus	0
C40-eye-retina-Lens-pineal-tongue-retinoblastoma-small	0
C41-retina-eye-medulla-Retinal-medulloblastoma-kidney-pineal	0
C42-small-lung-maxillary-pharyngeal-Mesenchymal-Wilms-colon	0
C43-ductus-seminal-duodenum-temporal-gall-prostate-bladder	0
C44-Dendritic-CD19-CD133-granulocyte-acute-thymus-immature	0
C45-testicular-choriocarcinoma-H9-teratocarcinoma-Wilms-pancreatic-iPS	0
C46-acute-Hodgkin-thymus-CD8-chronic-CD4-merkel	0
C47-CD19-Burkitt-acute-xeroderma-tonsil-lymphoma-appendix	0
C48-smooth-bladder-esophagus-colon-penis-aorta-uterus	0
C49-H9-iPS-testicular-HES3GFP-teratocarcinoma-hepatoblastoma-choriocarcinoma	0
C5-Hepatocyte-liver-hepatocellular-Intestinal-kidney-small-pancreas	0
C50-chorionic-placenta-amniotic-migratory-smallcell-chronic-choriocarcinoma	0
C51-kidney-mesothelioma-renal-signet-gall-lung-pancreas	0
C52-adult-NK-chronic-cord-testis-embryonic-myeloma	0
C53-medulloblastoma-pineal-retinoblastoma-small-retina-eye-pituitary	0
C54-Dendritic-Macrophage-Monocytederived-CD14-leiomyoma-adipose-immature	0
C55-hepatocellular-Intestinal-liver-Prostate-fibrosarcoma-Hepatocyte-hepatoblastoma	0
C56-heart-left-umbilical-skeletal-penis-diaphragm-tongue	0
C57-Neutrophils-Eosinophils-Whole-CD4-CD8-CD19-Natural	0
C58-Melanocyte-melanoma-retina-Retinal-eye-migratory-H9	0
C59-Smooth-Fibroblast-Mesenchymal-tenocyte-Ewing-skin-hepatic	0.235
C6-CD14-Eosinophils-Basophils-Peripheral-CD34-Natural-immature	0
C60-esophagus-tonsil-throat-tongue-uterus-cervix-cervical	0
C61-migratory-Dendritic-immature-Macrophage-xeroderma-cord-b	0
C62-Burkitt-tonsil-CD19-submaxillary-spleen-salivary-lymph	0
C63-neuroectodermal-neuroblastoma-carcinoid-peripheral-chronic-neuroepithelioma-acute	0
C64-Mast-chronic-acute-immature-chorionic-Basophils-Dendritic	0
C65-CD14-Eosinophils-Monocytederived-Basophils-immature-Macrophage-Neutrophils	0
C66-cerebellum-middle-occipital-parietal-medial-amygdala-hippocampus	0
C67-CD14-Monocytederived-Macrophage-dura-Dendritic-spleen-lung	0
C68-amniotic-chorionic-Placental-salivary-placenta-tongue-mesothelioma	0
C69-anaplastic-CD14-cord-hairy-mycosis-adult-NK	0
C7-CD14-Eosinophils-Neutrophils-Smooth-Basophils-Macrophage-Mast	0
C70-parotid-submaxillary-salivary-throat-trachea-aorta-tongue	0
C71-Monocytederived-Macrophage-CD14-Dendritic-Osteoblast-leiomyoma-Prostate	0
C72-skeletal-tongue-throat-heart-diaphragm-penis-left	0
C73-pineal-eye-retina-caudate-cerebellum-left-parietal	0
C74-splenic-B-b-plasma-xeroderma-lymphoma-hairy	0
C75-Eosinophils-Natural-CD8-Basophils-CD14-CD4-Peripheral	0
C76-argyrophil-gastrointestinal-temporal-duodenum-neuroblastoma-merkel-smallcell	0
C77-Saos2-osteosarcoma-Neutrophils-Natural-Chondrocyte-Basophils-CD8	0
C78-lymphoma-plasma-tonsil-appendix-lymph-seminal-trachea	0
C79-chorionic-Chondrocyte-Cardiac-Smooth-Fibroblast-Preadipocyte-Mesenchymal	0.346
C8-Natural-CD8-Basophils-CD4-CD14-Peripheral-CD34	0
C80-immature-migratory-CD14-Dendritic-splenic-cord-Mast	0
C81-trachea-salivary-throat-aorta-eye-submaxillary-parotid	0
C82-Basophils-CD14-Eosinophils-Natural-Peripheral-immature-CD34	0
C83-choriocarcinoma-pancreatic-placenta-chorionic-HES3GFP-testicular-amniotic	0
C84-choriocarcinoma-pancreatic-Wilms-Mallassezderived-thymus-salivary-colon	0
C85-neuroblastoma-carcinoid-retinoblastoma-small-pineal-rhabdomyosarcoma-medulloblastoma	0
C86-colon-carcinoid-small-neuroectodermal-giant-large-neuroepithelioma	0
C87-retinoblastoma-left-nonsmall-heart-small-diaphragm-bronchogenic	0
C88-Melanocyte-melanoma-Macrophage-Mesenchymal-migratory-Dendritic-Monocytederived	0
C89-small-retinoblastoma-medulloblastoma-iPS-acantholytic-eye-bronchogenic	0
C9-skeletal-diaphragm-tongue-throat-penis-heart-left	0
C90-neuroectodermal-peripheral-neuroepithelioma-neuroblastoma-carcinoid-parietal-putamen	0
C91-Fibroblast-Smooth-mesenchymal-Mesothelial-Small-Preadipocyte-Hair	0
C92-CD14CD16-CD14-Eosinophils-Basophils-Neutrophils-Macrophage-Whole	0
C93-chronic-acute-leukemia-acantholytic-medulloblastoma-testis-papillotubular	0
C94-smallcell-adrenal-lung-nonsmall-small-somatostatinoma-teratocarcinoma	0
C95-lung-aorta-trachea-penis-Alveolar-throat-endometrioid	0
C96-non-acute-tonsil-spleen-Burkitt-lymphoma-appendix	0
C97-small-smallcell-gastrointestinal-argyrophil-putamen-duodenum-brain	0
C98-CD8-Natural-Basophils-blood-CD4-Peripheral-Whole	0
C99-hairy-mycosis-submaxillary-salivary-cord-kidney-parotid	0

Repeat families with enriched expression in this sampleSummary:Ranked list of repeat family expression in this sample relative tothe median expression in the FANTOM5 collection is shown. Value is log10transformed. Analyst:NA link to dataset. data

TFBS(DNA)motifs over-represented in proximal region of promoters active in this sample

JASPAR motifsSummary:Association of JASPAR motif to the promoter expression in thissample. Pearson's correlation between the number of TFBSs estimated byusing the position-weight matrix for each promoter and its expression isexpressed as Z-score by taking the ones based on random position-weightmatrix, and the tail probability of the normal distribution correspondingto the Z-score is taken as the resulting P-value. Lower P-value indicatesmore (non-random) association of the motif to promoter expression Analyst: Michiel de Hoon link to dataset. data

library id: CNhs12597

Jaspar motif	Logo	P-value
MA0002.2	MA0002.2	0.124
MA0003.1	MA0003.1	0.538
MA0004.1	MA0004.1	0.0604
MA0006.1	MA0006.1	0.193
MA0007.1	MA0007.1	0.608
MA0009.1	MA0009.1	0.712
MA0014.1	MA0014.1	0.91
MA0017.1	MA0017.1	0.793
MA0018.2	MA0018.2	0.441
MA0019.1	MA0019.1	0.368
MA0024.1	MA0024.1	4.71755e-5
MA0025.1	MA0025.1	0.0271
MA0027.1	MA0027.1	0.857
MA0028.1	MA0028.1	1.73912e-5
MA0029.1	MA0029.1	0.725
MA0030.1	MA0030.1	0.0164
MA0031.1	MA0031.1	0.0693
MA0035.2	MA0035.2	0.598
MA0038.1	MA0038.1	9.0413e-5
MA0039.2	MA0039.2	0.667
MA0040.1	MA0040.1	0.538
MA0041.1	MA0041.1	0.795
MA0042.1	MA0042.1	0.617
MA0043.1	MA0043.1	0.276
MA0046.1	MA0046.1	0.543
MA0047.2	MA0047.2	0.192
MA0048.1	MA0048.1	8.09788e-4
MA0050.1	MA0050.1	1.80477e-7
MA0051.1	MA0051.1	1.50741e-4
MA0052.1	MA0052.1	0.645
MA0055.1	MA0055.1	5.24848e-4
MA0057.1	MA0057.1	0.721
MA0058.1	MA0058.1	0.121
MA0059.1	MA0059.1	0.526
MA0060.1	MA0060.1	2.46707e-10
MA0061.1	MA0061.1	0.339
MA0062.2	MA0062.2	0.146
MA0065.2	MA0065.2	0.603
MA0066.1	MA0066.1	0.766
MA0067.1	MA0067.1	0.0652
MA0068.1	MA0068.1	0.719
MA0069.1	MA0069.1	0.433
MA0070.1	MA0070.1	0.149
MA0071.1	MA0071.1	0.99
MA0072.1	MA0072.1	0.415
MA0073.1	MA0073.1	0.399
MA0074.1	MA0074.1	0.589
MA0076.1	MA0076.1	0.00898
MA0077.1	MA0077.1	0.368
MA0078.1	MA0078.1	0.92
MA0079.2	MA0079.2	0.0654
MA0080.2	MA0080.2	3.86558e-9
MA0081.1	MA0081.1	0.0363
MA0083.1	MA0083.1	0.00103
MA0084.1	MA0084.1	0.087
MA0087.1	MA0087.1	0.863
MA0088.1	MA0088.1	0.00833
MA0090.1	MA0090.1	9.21102e-4
MA0091.1	MA0091.1	0.906
MA0092.1	MA0092.1	0.466
MA0093.1	MA0093.1	0.132
MA0099.2	MA0099.2	0.233
MA0100.1	MA0100.1	0.0113
MA0101.1	MA0101.1	0.554
MA0102.2	MA0102.2	0.331
MA0103.1	MA0103.1	1.48048e-5
MA0104.2	MA0104.2	0.816
MA0105.1	MA0105.1	0.0563
MA0106.1	MA0106.1	0.03
MA0107.1	MA0107.1	0.102
MA0108.2	MA0108.2	0.00889
MA0111.1	MA0111.1	0.858
MA0112.2	MA0112.2	0.346
MA0113.1	MA0113.1	0.985
MA0114.1	MA0114.1	0.732
MA0115.1	MA0115.1	0.464
MA0116.1	MA0116.1	0.458
MA0117.1	MA0117.1	0.346
MA0119.1	MA0119.1	0.366
MA0122.1	MA0122.1	0.446
MA0124.1	MA0124.1	0.0758
MA0125.1	MA0125.1	0.494
MA0131.1	MA0131.1	0.53
MA0135.1	MA0135.1	0.0929
MA0136.1	MA0136.1	0.00282
MA0137.2	MA0137.2	0.854
MA0138.2	MA0138.2	0.502
MA0139.1	MA0139.1	0.81
MA0140.1	MA0140.1	0.679
MA0141.1	MA0141.1	0.203
MA0142.1	MA0142.1	0.45
MA0143.1	MA0143.1	0.516
MA0144.1	MA0144.1	0.928
MA0145.1	MA0145.1	0.349
MA0146.1	MA0146.1	0.826
MA0147.1	MA0147.1	0.929
MA0148.1	MA0148.1	0.624
MA0149.1	MA0149.1	0.828
MA0150.1	MA0150.1	0.0575
MA0152.1	MA0152.1	0.0322
MA0153.1	MA0153.1	0.647
MA0154.1	MA0154.1	0.576
MA0155.1	MA0155.1	0.512
MA0156.1	MA0156.1	0.155
MA0157.1	MA0157.1	0.15
MA0159.1	MA0159.1	0.042
MA0160.1	MA0160.1	0.167
MA0162.1	MA0162.1	0.021
MA0163.1	MA0163.1	0.0029
MA0164.1	MA0164.1	0.684
MA0258.1	MA0258.1	0.0993
MA0259.1	MA0259.1	0.961

FANTOM5 phase1 novel unique motifsSummary:Association of the 169 novel and unique motifs discovered in FANTOM5 phase1 in this sample. Among the de-novo motifs discovered by DMF, HOMER,ChIPMunk, and ScanAll, only novel motifs are selected after comparison with known motif sets, and their clustering based on MACRO-APE resulted in169 novel and unique motifs. Their association to the promoter expression is evaluated in the same way to the JASPAR motif above Analyst: Michiel de Hoon link to dataset. data

library id: CNhs12597

Novel motif	Logo	P-value
1	1	0.984
10	10	0.52
100	100	0.597
101	101	0.665
102	102	0.0834
103	103	0.997
104	104	0.618
105	105	0.748
106	106	0.0045
107	107	0.757
108	108	0.41
109	109	0.784
11	11	0.938
110	110	0.223
111	111	0.485
112	112	0.0388
113	113	0.189
114	114	0.316
115	115	0.342
116	116	0.373
117	117	0.49
118	118	0.665
119	119	0.152
12	12	0.468
120	120	0.194
121	121	0.641
122	122	0.0443
123	123	0.00107
124	124	0.929
125	125	0.756
126	126	0.808
127	127	0.936
128	128	0.423
129	129	0.228
13	13	0.126
130	130	0.026
131	131	0.511
132	132	0.839
133	133	0.646
134	134	0.746
135	135	0.404
136	136	0.704
137	137	0.0833
138	138	0.0596
139	139	1.57057e-4
14	14	0.315
140	140	0.883
141	141	0.2
142	142	0.677
143	143	0.773
144	144	0.834
145	145	0.709
146	146	0.95
147	147	0.34
148	148	0.961
149	149	0.761
15	15	0.353
150	150	0.824
151	151	0.529
152	152	0.513
153	153	0.538
154	154	0.904
155	155	0.0386
156	156	0.333
157	157	0.125
158	158	0.218
159	159	0.369
16	16	0.536
160	160	0.886
161	161	0.483
162	162	0.626
163	163	0.448
164	164	0.562
165	165	0.81
166	166	0.0548
167	167	0.915
168	168	0.529
169	169	0.693
17	17	0.982
18	18	0.487
19	19	0.418
2	2	0.478
20	20	0.943
21	21	0.295
22	22	0.974
23	23	0.0651
24	24	0.564
25	25	0.252
26	26	0.342
27	27	0.56
28	28	0.779
29	29	0.628
3	3	0.616
30	30	0.543
31	31	0.641
32	32	0.064
33	33	0.141
34	34	0.611
35	35	0.75
36	36	0.478
37	37	0.284
38	38	0.327
39	39	0.977
4	4	0.629
40	40	0.487
41	41	0.0426
42	42	0.905
43	43	0.303
44	44	0.816
45	45	0.346
46	46	0.839
47	47	0.956
48	48	0.9
49	49	0.285
5	5	0.396
50	50	0.553
51	51	0.747
52	52	0.165
53	53	0.169
54	54	0.507
55	55	0.914
56	56	0.987
57	57	0.98
58	58	0.106
59	59	0.422
6	6	0.863
60	60	0.011
61	61	0.377
62	62	0.0308
63	63	0.929
64	64	0.592
65	65	0.183
66	66	0.0232
67	67	0.701
68	68	0.823
69	69	0.723
7	7	0.399
70	70	2.72358e-5
71	71	0.723
72	72	0.787
73	73	0.839
74	74	0.556
75	75	0.598
76	76	0.174
77	77	0.763
78	78	0.981
79	79	0.59
8	8	0.926
80	80	0.536
81	81	0.265
82	82	0.0447
83	83	0.289
84	84	0.267
85	85	0.0286
86	86	0.407
87	87	0.519
88	88	0.779
89	89	0.192
9	9	0.971
90	90	0.8
91	91	0.234
92	92	0.195
93	93	0.9
94	94	0.618
95	95	0.314
96	96	0.359
97	97	0.845
98	98	0.0106
99	99	0.0204

de novo motifs identified by HOMER in promoters active in this sampleSummary:The result of HOMER in this sample is shown. Analyst:NA library id: CNhs12597

FANTOM5 (FF) ontology

Direct parent terms

is_a relathionship
EFO:0002091 biological replicate
FF:0000177 human smooth muscle cell of umbilical vein sample

Ancestor terms (non development)Summary:Connected ontology terms with is_a, part_of or located_in relationship Analyst: Hideya Kawaji link to source data data

CL: Cell type
0000000 (cell), 0000000 (cell)
0000003 (native cell)
0000548 (animal cell)
0002371 (somatic cell)
0000393 (electrically responsive cell)
0000183 (contractile cell)
0000187 (muscle cell)
0000192 (smooth muscle cell)
0000211 (electrically active cell)
0000255 (eukaryotic cell)
0000359 (vascular associated smooth muscle cell)
0002588 (smooth muscle cell of the umbilical vein)

UBERON: Anatomy
0000468 (multi-cellular organism)
0001638 (vein)
0000483 (epithelium)
0000479 (tissue)
0000055 (vessel)
0004111 (anatomical conduit)
0004120 (mesoderm-derived structure)
0000061 (anatomical structure)
0000465 (material anatomical entity)
0003914 (epithelial tube)
0000025 (tube)
0000477 (anatomical cluster)
0000467 (anatomical system)
0001062 (anatomical entity)
0000480 (anatomical group)
0000119 (cell layer)
0010260 (umbilical blood vessel)
0003920 (venous blood vessel)
0007500 (epithelial tube open at both ends)
0001981 (blood vessel)
0002049 (vasculature)
0010317 (germ layer / neural crest derived structure)
0007798 (vascular system)
0002066 (umbilical vein)
0004535 (cardiovascular system)
0004537 (blood vasculature)
0004582 (venous system)
0001009 (circulatory system)

FF: FANTOM5
0000102 (sample by type)
0000210 (human sample)
0000002 (in vivo cell sample)
0000101 (sample by species)
0000001 (sample)
0000167 (smooth muscle cell sample)
0000177 (human smooth muscle cell of umbilical vein sample)

Ancestor terms (development)Summary:Connected ontology terms with develops_from, derives_from or preceded_by relationship Analyst: Hideya Kawaji link to source data data
CL:0000355 (multi-potent skeletal muscle stem cell)
CL:0000222 (mesodermal cell)
CL:0000514 (smooth muscle myoblast)

@@ Line 1: / Line 1: @@
 {{f5samples
-|DRA_sample_Accession=CAGE@DRS008402
+|DRA_sample_Accession=CAGE@SAMD00005129
-|accession_numbers=CAGE;DRX008510;DRR009382;DRZ000807;DRZ002192
+|accession_numbers=CAGE;DRX008510;DRR009382;DRZ000807;DRZ002192;DRZ012157;DRZ013542
 |ancestors_in_anatomy_facet=UBERON:0000468,UBERON:0001638,UBERON:0000483,UBERON:0000479,UBERON:0000055,UBERON:0004111,UBERON:0004120,UBERON:0000061,UBERON:0000465,UBERON:0003914,UBERON:0000025,UBERON:0000477,UBERON:0000467,UBERON:0001062,UBERON:0000480,UBERON:0000119,UBERON:0010260,UBERON:0003920,UBERON:0007500,UBERON:0001981,UBERON:0002049,UBERON:0010317,UBERON:0007798,UBERON:0002066,UBERON:0004535,UBERON:0004537,UBERON:0004582,UBERON:0001009
 |ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000548,CL:0002371,CL:0000393,CL:0000183,CL:0000187,CL:0000192,CL:0000211,CL:0000255,CL:0000359,CL:0002588
@@ Line 9: / Line 9: @@
 |created_by=
 |creation_date=
-|data_phase=1
+|data_phase=2
-|datafreeze_phase=1
+|datafreeze_phase=2
 |def=
 |expression_enrichment_score=chr4:174451370..174451387,-!p1@HAND2!2.12!129.36!HAND2;;chr12:66218255..66218304,+!p3@HMGA2!1.84!175.97!HMGA2;;chr12:54410664..54410684,+!p1@HOXC4,p1@HOXC5,p1@HOXC6!1.64!42.31!HOXC5;;chr12:66218598..66218645,+!p2@HMGA2!1.63!186.43!HMGA2;;chr7:19157248..19157268,-!p1@TWIST1!1.61!107.42!TWIST1;;chr12:66218212..66218244,+!p5@HMGA2!1.49!43.17!HMGA2;;chr12:66218183..66218209,+!p4@HMGA2!1.41!46.18!HMGA2;;chr12:54402745..54402788,+!p1@HOXC8!1.41!24.81!HOXC8;;chr12:54393880..54393962,+!p1@HOXC9!1.39!23.38!HOXC9;;chr4:174450089..174450153,-!p2@HAND2!1.31!19.65!HAND2;;chr12:66218836..66218888,+!p1@HMGA2!1.30!173.10!HMGA2;;chr11:46299199..46299233,+!p1@CREB3L1!1.28!90.49!CREB3L1;;chr5:134369905..134369972,-!p1@PITX1!1.25!25.38!PITX1;;chr7:35293685..35293718,-!p1@TBX20!1.25!16.78!TBX20;;chr4:111544219..111544240,-!p1@PITX2!1.25!16.64!PITX2;;chr12:54378923..54378966,+!p1@HOXC10!1.24!16.49!HOXC10;;chr12:54379029..54379057,+!p2@HOXC10!1.21!15.35!HOXC10;;chr4:111558135..111558198,-!p2@PITX2!1.21!15.06!PITX2;;chr17:46682321..46682362,-!p1@HOXB6!1.18!14.20!HOXB6;;chr15:57511609..57511651,+!p2@TCF12!1.16!22.37!TCF12;;chr1:170633348..170633399,+!p2@PRRX1!1.14!17.64!PRRX1;;chr2:176969228..176969260,+!p1@HOXD11!1.14!12.91!HOXD11;;chr5:137804484..137804498,+!p2@EGR1!1.13!50.34!EGR1;;chr12:66218573..66218596,+!p7@HMGA2!1.13!18.50!HMGA2;;chr12:66218378..66218401,+!p6@HMGA2!1.12!19.07!HMGA2;;chr16:86544113..86544145,+!p1@FOXF1!1.11!14.91!FOXF1;;chr7:27224842..27224872,-!p1@HOXA11!1.11!11.90!HOXA11;;chr6:134210243..134210257,+!p1@TCF21!1.11!11.76!TCF21;;chr4:174451350..174451363,-!p3@HAND2!1.09!11.33!HAND2;;chr11:61520075..61520136,+!p1@C11orf9!1.08!23.23!C11orf9;;chr12:66218443..66218461,+!p8@HMGA2!1.05!13.19!HMGA2;;chr18:19749386..19749404,+!p2@GATA6!1.04!14.34!GATA6;;chr5:134369879..134369898,-!p2@PITX1!1.03!9.61!PITX1;;chr19:46801639..46801699,+!p1@HIF3A!1.01!9.18!HIF3A;;chr12:54380404..54380433,+!p3@HOXC10!1.00!8.89!HOXC10;;chr7:27205136..27205164,-!p1@HOXA9!0.99!8.75!HOXA9;;chr11:46299539..46299620,+!p2@CREB3L1!0.98!14.63!CREB3L1;;chr2:19558373..19558392,-!p1@OSR1!0.97!23.23!OSR1;;chr5:92918919..92918942,+!p1@NR2F1!0.96!37.29!NR2F1;;chr2:5832508..5832524,+!p1@SOX11!0.95!7.89!SOX11;;chr7:27224795..27224840,-!p2@HOXA11!0.93!7.46!HOXA11;;chr6:34204672..34204692,+!p1@HMGA1!0.92!856.17!HMGA1;;chr6:34204921..34204939,+!p3@HMGA1!0.92!229.60!HMGA1;;chr12:54402729..54402743,+!p3@HOXC8!0.91!7.17!HOXC8;;chrY:21906594..21906622,-!p1@KDM5D!0.91!7.17!KDM5D;;chr12:54402790..54402805,+!p2@HOXC8!0.90!7.03!HOXC8;;chr12:54410639..54410659,+!p2@HOXC4,p2@HOXC5,p2@HOXC6!0.90!7.03!HOXC5;;chr12:66218469..66218477,+!p16@HMGA2!0.90!7.03!HMGA2;;chr18:19749541..19749557,+!p1@GATA6!0.88!21.66!GATA6;;chr12:66218152..66218174,+!p10@HMGA2!0.88!7.17!HMGA2;;chr12:66218420..66218439,+!p12@HMGA2!0.87!6.45!HMGA2;;chr12:54384370..54384382,+!p5@HOXC6!0.84!5.88!HOXC6;;chr17:59477233..59477263,+!p1@TBX2!0.83!19.07!TBX2;;chr11:65686732..65686756,+!p2@DRAP1!0.82!25.10!DRAP1;;chr1:170632285..170632309,+!p1@PRRX1!0.82!6.45!PRRX1;;chr7:27192185..27192209,-!p1@HOXA3!0.81!5.45!HOXA3;;chr5:137801160..137801176,+!p1@EGR1!0.80!578.38!EGR1;;chr12:115121962..115121987,-!p1@TBX3!0.80!48.04!TBX3;;chr8:49833948..49833973,-!p2@SNAI2!0.80!36.57!SNAI2;;chr7:27205106..27205134,-!p2@HOXA9!0.80!5.31!HOXA9;;chr7:27213893..27213954,-!p1@HOXA10!0.80!5.31!HOXA10;;chr12:54422217..54422239,+!p3@HOXC6!0.80!5.31!HOXC6;;chr17:46622070..46622109,-!p1@HOXB2!0.79!12.19!HOXB2;;chr12:66218923..66218934,+!p14@HMGA2!0.79!5.16!HMGA2;;chrY:2803415..2803468,+!p1@ZFY!0.79!5.16!ZFY;;chr12:66218003..66218018,+!p9@HMGA2!0.78!6.31!HMGA2;;chr9:77112244..77112262,+!p1@RORB!0.78!5.74!RORB;;chr17:46675558..46675577,-!p2@HOXB6!0.78!5.02!HOXB6;;chr12:66218904..66218913,+!p11@HMGA2!0.78!5.02!HMGA2;;chr1:158979872..158979898,+!p3@IFI16!0.77!16.06!IFI16;;chr8:49833978..49833996,-!p1@SNAI2!0.76!109.28!SNAI2;;chr6:45390025..45390076,+!p2@RUNX2!0.76!12.19!RUNX2;;chr6:155635583..155635644,-!p1@TFB1M!0.75!65.83!TFB1M;;chr19:45971246..45971265,+!p1@FOSB!0.74!93.93!FOSB;;chr17:46688334..46688385,-!p1@HOXB7!0.74!6.74!HOXB7;;chr2:176969179..176969226,+!p2@HOXD11!0.74!4.45!HOXD11;;chr11:65686802..65686818,+!p6@DRAP1!0.73!8.03!DRAP1;;chr12:66358080..66358094,+!p15@HMGA2!0.72!4.30!HMGA2;;chr4:111544254..111544270,-!p3@PITX2!0.71!4.16!PITX2;;chr15:96874012..96874042,+!p2@NR2F2!0.70!41.02!NR2F2;;chr7:26191809..26191890,+!p1@NFE2L3!0.70!22.23!NFE2L3;;chr17:59477197..59477212,+!p2@TBX2!0.70!7.46!TBX2;;chr19:45260775..45260838,+!p5@BCL3!0.70!5.45!BCL3;;chr5:92918956..92918969,+!p4@NR2F1!0.69!4.30!NR2F1;;chr1:151032860..151032918,+!p1@MLLT11!0.68!51.63!MLLT11;;chr20:42543441..42543497,+!p1@TOX2!0.68!19.07!TOX2;;chr3:168864315..168864339,-!p2@MECOM!0.68!6.74!MECOM;;chr15:83953397..83953425,-!p1@BNC1!0.68!4.45!BNC1;;chr15:42749722..42749739,-!p2@ZFP106!0.67!7.17!ZFP106;;chr16:86612320..86612394,+!p1@FOXL1!0.67!3.73!FOXL1;;chr2:176994408..176994492,+!p1@HOXD8!0.67!3.73!HOXD8;;chr7:19157043..19157088,-!p2@TWIST1!0.66!10.04!TWIST1;;chr15:37390850..37390909,-!p3@MEIS2!0.66!7.74!MEIS2;;chr6:85473156..85473210,-!p2@TBX18!0.66!4.45!TBX18;;chr15:37392724..37392757,-!p1@MEIS2!0.65!18.50!MEIS2;;chr17:46622114..46622138,-!p4@HOXB2!0.65!5.74!HOXB2;;chr17:46690839..46690884,-!p1@HOXB8!0.65!3.44!HOXB8;;chr12:54380036..54380091,+!p4@HOXC10!0.65!3.44!HOXC10;;chr14:62162258..62162269,+!p2@HIF1A!0.64!37.86!HIF1A;;chr14:62162285..62162296,+!p3@HIF1A!0.64!20.51!HIF1A;;chr20:50179368..50179392,-!p2@NFATC2!0.64!4.59!NFATC2;;chr6:45390300..45390335,+!p4@RUNX2!0.62!5.31!RUNX2;;chr11:65667884..65667895,-!p2@FOSL1!0.61!14.05!FOSL1;;chr15:37392094..37392116,-!p6@MEIS2!0.61!4.02!MEIS2;;chr6:45296048..45296082,+!p1@RUNX2!0.61!3.59!RUNX2;;chr11:65667846..65667868,-!p1@FOSL1!0.60!96.66!FOSL1;;chr15:37391588..37391604,-!p11@MEIS2!0.60!4.02!MEIS2;;chr6:34205372..34205412,+!p5@HMGA1!0.59!17.35!HMGA1;;chr20:42543506..42543549,+!p2@TOX2!0.59!7.89!TOX2;;chr7:27196267..27196311,-!p1@HOXA7!0.59!2.87!HOXA7;;chr17:46621937..46621966,-!p2@HOXB2!0.58!8.75!HOXB2;;chr15:96873984..96873999,+!p3@NR2F2!0.57!24.67!NR2F2;;chr2:121493425..121493474,+!p1@GLI2!0.57!6.88!GLI2;;chr18:19749353..19749367,+!p4@GATA6!0.57!2.72!GATA6;;chr12:66357214..66357233,+!p13@HMGA2!0.57!2.72!HMGA2;;chr13:36871902..36872023,-!p1@CCDC169-SOHLH2,p1@CCDC169,p1@SOHLH2!0.56!6.60!SOHLH2;;chr20:50721803..50721857,-!p2@ZFP64!0.56!4.59!ZFP64;;chr11:46299186..46299195,+!p3@CREB3L1!0.56!3.01!CREB3L1;;chr18:19749517..19749531,+!p3@GATA6!0.55!5.16!GATA6;;chr17:59477275..59477286,+!p3@TBX2!0.55!3.59!TBX2;;chr12:115122005..115122016,-!p3@TBX3!0.55!3.16!TBX3;;chr18:53068911..53068935,-!p4@TCF4!0.55!3.01!TCF4;;chr8:93074803..93074845,-!p1@RUNX1T1!0.55!2.58!RUNX1T1;;chr7:14029283..14029311,-!p1@ETV1!0.54!16.35!ETV1;;chr17:41277372..41277418,-!p1@BRCA1!0.54!11.04!BRCA1;;chr1:158979851..158979865,+!p5@IFI16!0.54!6.31!IFI16;;chr3:141121847..141121868,+!p5@ZBTB38!0.54!4.16!ZBTB38;;chr15:37392703..37392717,-!p8@MEIS2!0.54!3.87!MEIS2;;chr14:75745523..75745537,+!p1@FOS!0.53!374.88!FOS;;chr14:55493763..55493824,-!p1@WDHD1!0.53!22.95!WDHD1;;chr11:65686952..65686975,+!p5@DRAP1!0.53!16.35!DRAP1;;chr15:37390374..37390422,-!p9@MEIS2!0.53!3.16!MEIS2;;chr1:170633262..170633285,+!p3@PRRX1!0.53!2.87!PRRX1;;chr1:158979792..158979814,+!p2@IFI16!0.52!28.40!IFI16;;chr8:77593474..77593612,+!p1@ZFHX4!0.52!12.19!ZFHX4;;chr15:96869255..96869291,+!p6@NR2F2!0.52!4.88!NR2F2;;chr2:166326200..166326216,+!p1@CSRNP3!0.52!3.73!CSRNP3;;chr3:25469724..25469773,+!p1@RARB!0.52!3.73!RARB;;chr15:37392534..37392562,-!p10@MEIS2!0.52!2.58!MEIS2;;chr12:115122318..115122331,-!p2@TBX3!0.52!2.29!TBX3;;chr12:66218037..66218042,+!p18@HMGA2!0.52!2.29!HMGA2;;chr2:102091144..102091183,-!p2@RFX8!0.52!2.29!RFX8;;chr3:25469815..25469866,+!p3@RARB!0.52!2.29!RARB;;chr19:46800289..46800327,+!p2@HIF3A!0.52!2.29!HIF3A;;chr6:45390002..45390023,+!p6@RUNX2!0.51!4.45!RUNX2;;chr14:62162224..62162254,+!p1@HIF1A!0.50!421.20!HIF1A;;chr15:67357924..67357952,+!p2@SMAD3!0.50!18.50!SMAD3;;chr1:151032833..151032850,+!p3@MLLT11!0.50!5.88!MLLT11;;chr5:72744445..72744466,-!p2@FOXD1!0.50!4.16!FOXD1;;chr19:13134772..13134822,+!p2@NFIX!0.50!3.59!NFIX;;chr7:27196217..27196246,-!p2@HOXA7!0.50!2.15!HOXA7;;chr7:35293665..35293680,-!p2@TBX20!0.50!2.15!TBX20;;chr11:46299443..46299459,+!p4@CREB3L1!0.50!2.15!CREB3L1;;chr12:54378984..54378996,+!p7@HOXC10!0.50!2.15!HOXC10;;chr12:54380112..54380126,+!p5@HOXC10!0.50!2.15!HOXC10;;chr3:150126759..150126784,+!p2@TSC22D2!0.49!12.33!TSC22D2;;chr5:92918894..92918912,+!p2@NR2F1!0.49!8.60!NR2F1;;chr15:57511589..57511608,+!p4@TCF12!0.48!2.01!TCF12;;chr17:26697276..26697303,-!p2@SEBOX,p2@VTN!0.48!2.01!SEBOX;;chr3:141087339..141087387,+!p2@ZBTB38!0.47!27.25!ZBTB38;;chr3:141087393..141087426,+!p3@ZBTB38!0.47!10.04!ZBTB38;;chr2:25475120..25475176,-!p2@DNMT3A!0.47!2.87!DNMT3A;;chr1:59249688..59249703,-!p3@JUN!0.46!15.20!JUN;;chr5:178368186..178368238,+!p1@ZNF454!0.46!4.02!ZNF454;;chr6:1312325..1312340,+!p1@FOXQ1!0.46!3.59!FOXQ1;;chr15:96869114..96869160,+!p11@NR2F2!0.46!2.87!NR2F2;;chr15:80843484..80843499,+!p5@ARNT2!0.46!1.86!ARNT2;;chr6:45390399..45390418,+!p15@RUNX2!0.46!1.86!RUNX2;;chr2:5832493..5832507,+!p2@SOX11!0.46!1.86!SOX11;;chr3:25470156..25470227,+!p2@RARB!0.46!1.86!RARB;;chr4:111558118..111558133,-!p5@PITX2!0.46!1.86!PITX2;;chr10:119303078..119303169,+!p2@EMX2!0.46!1.86!EMX2;;chr11:46333934..46333963,+!p5@CREB3L1!0.46!1.86!CREB3L1;;chr12:54394309..54394336,+!p2@HOXC9!0.46!1.86!HOXC9;;chr12:85673977..85674015,+!p1@ALX1!0.46!1.86!ALX1;;chr17:41622765..41622821,-!p2@ETV4!0.45!3.16!ETV4;;chr11:113930425..113930471,+!p1@ZBTB16!0.45!3.01!ZBTB16;;chr6:45390077..45390105,+!p9@RUNX2!0.45!2.58!RUNX2;;chr19:23299814..23299844,+!p1@ZNF730!0.45!2.44!ZNF730;;chr5:137804357..137804390,+!p4@EGR1!0.45!2.29!EGR1;;chr5:92919375..92919438,+!p6@NR2F1!0.45!2.01!NR2F1;;chr8:48650715..48650735,-!p1@CEBPD!0.44!322.10!CEBPD;;chr12:96588143..96588185,+!p1@ELK3!0.44!30.40!ELK3;;chr19:20011744..20011770,+!p1@ZNF93!0.44!9.18!ZNF93;;chr2:239756671..239756732,+!p1@TWIST2!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+|fantom_cat=http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000056;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000187;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000192;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000222;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000359;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0002588;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0001638;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0001981;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0002066;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0002385;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0007798;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0010260
 |ffid_belonging_in_development=CL:0000355,CL:0000222,CL:0000514
 |fonse_cell_line=
@@ Line 41: / Line 42: @@
 |fonse_treatment_closure=
 |has_quality=
+|hg19bam=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/Smooth%2520Muscle%2520Cells%2520-%2520Umbilical%2520Vein%252c%2520donor1.CNhs12597.11541-120B2.hg19.nobarcode.bam
+|hg19ctss=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/Smooth%2520Muscle%2520Cells%2520-%2520Umbilical%2520Vein%252c%2520donor1.CNhs12597.11541-120B2.hg19.ctss.bed.gz
+|hg19fasta=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/Smooth%2520Muscle%2520Cells%2520-%2520Umbilical%2520Vein%252c%2520donor1.CNhs12597.11541-120B2.hg19.nobarcode.rdna.fa.gz
+|hg38bam=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.primary_cell.hCAGE/Smooth%2520Muscle%2520Cells%2520-%2520Umbilical%2520Vein%252c%2520donor1.CNhs12597.11541-120B2.hg38.nobarcode.bam
+|hg38ctss=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.primary_cell.hCAGE/Smooth%2520Muscle%2520Cells%2520-%2520Umbilical%2520Vein%252c%2520donor1.CNhs12597.11541-120B2.hg38.nobarcode.ctss.bed.gz
 |id=FF:11541-120B2
 |is_a=EFO:0002091;;FF:0000177
 |is_obsolete=
 |library_id=CNhs12597
-|library_id_phase_based=1:CNhs12597
+|library_id_phase_based=2:CNhs12597
+|microRNAs=
+|microRNAs_nn=
+|microRNAs_nonnovel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer/#/human#cage;sample;11541
+|microRNAs_novel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer_novel/#/human#cage;sample;11541
 |name=Smooth Muscle Cells - Umbilical Vein, donor1
 |namespace=FANTOM5
@@ Line 51: / Line 61: @@
 |profile_cagescan=,,,
 |profile_hcage=CNhs12597,LSID912,release011,COMPLETED
-|profile_rnaseq=,,,
+|profile_rnaseq=
 |profile_srnaseq=,,,
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 }}

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FF:11541-120B2: Difference between revisions

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Latest revision as of 18:07, 4 June 2020

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	Mozilla Cavendish skin modified by DaSch for the Web Community Wiki GitHub project page – Report a bug – Skin version: 2.6.0