FF:389-23F5: Difference between revisions
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{{f5samples | {{f5samples | ||
|DRA_sample_Accession=CAGE@ | |DRA_sample_Accession=CAGE@SAMD00005814 | ||
|accession_numbers=CAGE;DRX009102;DRR009976;DRZ001401;DRZ002784 | |accession_numbers=CAGE;DRX009102;DRR009976;DRZ001401;DRZ002784;DRZ012751;DRZ014134 | ||
|ancestors_in_anatomy_facet=UBERON:0000468,UBERON:0000922,UBERON:0000473,UBERON:0000991,UBERON:0000479,UBERON:0005156,UBERON:0000466,UBERON:0000062,UBERON:0004120,UBERON:0000061,UBERON:0000465,UBERON:0000990,UBERON:0002553,UBERON:0000467,UBERON:0001062,UBERON:0000480,UBERON:0003135,UBERON:0003133,UBERON:0002323,UBERON:0000464,UBERON:0004458,UBERON:0010317,UBERON:0003101,UBERON:0000079 | |ancestors_in_anatomy_facet=UBERON:0000468,UBERON:0000922,UBERON:0000473,UBERON:0000991,UBERON:0000479,UBERON:0005156,UBERON:0000466,UBERON:0000062,UBERON:0004120,UBERON:0000061,UBERON:0000465,UBERON:0000990,UBERON:0002553,UBERON:0000467,UBERON:0001062,UBERON:0000480,UBERON:0003135,UBERON:0003133,UBERON:0002323,UBERON:0000464,UBERON:0004458,UBERON:0010317,UBERON:0003101,UBERON:0000079 | ||
|ancestors_in_cell_lineage_facet= | |ancestors_in_cell_lineage_facet= | ||
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|created_by= | |created_by= | ||
|creation_date= | |creation_date= | ||
|data_phase= | |data_phase=2 | ||
|datafreeze_phase= | |datafreeze_phase=2 | ||
|def= | |def= | ||
|expression_enrichment_score=chr1:140739014..140739032,-!p1@Lhx9!2.29!242.67!Lhx9;;chr10:22539932..22539956,-!p1@Tcf21!2.07!298.73!Tcf21;;chrX:90531838..90531861,+!p1@Arx!2.01!127.09!Arx;;chr2:38570011..38570034,-!p1@Nr5a1!1.97!93.30!Nr5a1;;chr7:147129712..147129774,+!p1@Utf1!1.97!92.55!Utf1;;chr14:63864056..63864102,-!p1@Gata4!1.87!122.30!Gata4;;chr15:102828658..102828678,+!p1@Hoxc6!1.72!50.99!Hoxc6;;chr2:104966766..104966786,+!p1@Wt1!1.60!59.66!Wt1;;chr2:74549968..74549996,+!p1@Hoxd3!1.60!48.29!Hoxd3;;chr2:74529970..74529997,+!p1@Hoxd10!1.52!32.45!Hoxd10;;chr2:104966874..104966907,+!p2@Wt1!1.50!30.95!Wt1;;chr10:119913278..119913298,-!p2@Hmga2!1.46!60.40!Hmga2;;chr19:59533221..59533271,+!p1@Emx2!1.45!32.89!Emx2;;chr17:35642997..35643014,+!p1@Pou5f1!1.36!22.13!Pou5f1;;chr2:74536026..74536039,+!p1@Hoxd9!1.33!20.48!Hoxd9;;chr10:119913310..119913366,-!p1@Hmga2!1.32!150.11!Hmga2;;chr10:119913546..119913583,-!p3@Hmga2!1.29!37.98!Hmga2;;chr7:147129777..147129814,+!p2@Utf1!1.26!17.34!Utf1;;chr2:74550015..74550057,+!p2@Hoxd3!1.24!16.45!Hoxd3;;chr2:104966933..104966966,+!p3@Wt1!1.24!16.45!Wt1;;chr11:85646303..85646329,+!p1@Tbx2!1.23!104.96!Tbx2;;chr8:26958093..26958148,-!p2@Ash2l!1.23!16.15!Ash2l;;chr19:25580110..25580163,+!p1@Dmrt1!1.23!15.85!Dmrt1;;chr17:35642973..35642994,+!p2@Pou5f1!1.23!15.85!Pou5f1;;chr3:54985946..54985981,+!p1@Sohlh2!1.16!13.31!Sohlh2;;chr7:147129680..147129693,+!p3@Utf1!1.15!13.16!Utf1;;chr10:126778916..126778974,-!p1@Gli1!1.14!29.01!Gli1;;chr11:85646263..85646278,+!p2@Tbx2!1.13!31.70!Tbx2;;chr10:119914001..119914078,-!p4@Hmga2!1.13!17.19!Hmga2;;chr2:104966465..104966479,+!p6@Wt1!1.11!11.81!Wt1;;chr2:74536050..74536065,+!p2@Hoxd9!1.09!11.36!Hoxd9;;chr14:63864337..63864381,-!p6@Gata4!1.08!10.91!Gata4;;chr14:63890660..63890687,-!p7@Gata4!1.07!10.62!Gata4;;chr15:102828642..102828653,+!p2@Hoxc6!1.05!10.32!Hoxc6;;chr14:63890459..63890484,-!p4@Gata4!1.05!10.32!Gata4;;chrX:83437105..83437121,+!p1@Nr0b1!1.05!10.17!Nr0b1;;chrX:45245679..45245702,-!p1@Smarca1!1.04!45.60!Smarca1;;chr19:59533139..59533152,+!p2@Emx2!1.01!9.12!Emx2;;chr19:59533163..59533185,+!p3@Emx2!1.00!8.97!Emx2;;chr6:122657610..122657626,+!p1@Nanog,p1@Nanogpd!0.98!8.52!Nanog;;chr12:87811059..87811072,+!p3@Esrrb!0.96!8.22!Esrrb;;chr2:74529998..74530020,+!p2@Hoxd10!0.96!8.07!Hoxd10;;chr14:63890491..63890516,-!p2@Gata4!0.94!7.63!Gata4;;chr12:3891753..3891801,+!p4@Dnmt3a!0.93!12.41!Dnmt3a;;chr19:59533429..59533470,+!p4@Emx2!0.93!7.48!Emx2;;chr17:25707623..25707639,-!p1@Sox8!0.92!32.45!Sox8;;chr15:40486883..40486903,+!p4@Zfpm2!0.92!9.87!Zfpm2;;chr11:69468531..69468557,+!p1@Sox15!0.92!7.33!Sox15;;chr2:74536071..74536083,+!p4@Hoxd9!0.91!7.18!Hoxd9;;chr7:6649134..6649167,-!p1@Zim1!0.90!39.47!Zim1;;chr1:120879128..120879183,-!p3@Gli2!0.90!13.61!Gli2;;chr1:140739042..140739054,-!p2@Lhx9!0.90!7.03!Lhx9;;chr2:152758901..152758925,-!p1@Foxs1!0.89!31.55!Foxs1;;chr11:85646341..85646352,+!p3@Tbx2!0.89!13.61!Tbx2;;chr3:34548909..34548927,+!p1@Sox2!0.88!11.51!Sox2;;chr2:104966662..104966673,+!p4@Wt1!0.88!6.58!Wt1;;chr2:105003277..105003280,+!p5@Wt1!0.88!6.58!Wt1;;chr14:63890519..63890539,-!p3@Gata4!0.87!6.43!Gata4;;chr12:34642510..34642530,+!p1@Twist1!0.86!20.63!Twist1;;chr15:35225845..35225867,+!p1@Osr2!0.84!15.70!Osr2;;chr12:3891810..3891829,+!p2@Dnmt3a!0.83!9.27!Dnmt3a;;chr2:168592636..168592651,-!p1@Sall4!0.83!5.83!Sall4;;chr2:74535796..74535808,+!p3@Hoxd9!0.82!5.53!Hoxd9;;chr12:28027561..28027591,-!p1@Sox11!0.81!38.58!Sox11;;chr5:31271028..31271040,+!p1@Tcf23!0.80!5.38!Tcf23;;chr9:44249274..44249313,-!p1@Foxr1!0.80!5.38!Foxr1;;chr11:85646469..85646488,+!p5@Tbx2!0.79!7.92!Tbx2;;chr2:74549945..74549965,+!p4@Hoxd3!0.79!5.23!Hoxd3;;chr14:63890691..63890718,-!p8@Gata4!0.79!5.23!Gata4;;chr4:122911086..122911112,+!p1@Heyl!0.78!64.59!Heyl;;chr10:119913266..119913277,-!p6@Hmga2!0.78!5.08!Hmga2;;chr1:168168856..168168893,-!p1@Mael!0.78!5.08!Mael;;chr19:10315179..10315241,-!p1@Gm98!0.77!55.62!Gm98;;chr2:77357622..77357704,-!p1@Zfp385b!0.77!14.20!Zfp385b;;chr1:38684260..38684312,-!p2@Aff3!0.76!36.63!Aff3;;chr13:83712735..83712761,+!p9@Mef2c!0.76!4.78!Mef2c;;chr11:84339016..84339044,-!p1@Lhx1!0.76!4.78!Lhx1;;chr7:52471143..52471186,+!p1@Tead2!0.74!53.68!Tead2;;chr18:11052456..11052477,+!p3@Gata6!0.74!15.10!Gata6;;chr8:90483433..90483457,-!p2@Zfp423!0.74!6.28!Zfp423;;chr4:133109285..133109308,+!p1@Nr0b2!0.74!4.49!Nr0b2;;chr2:181194069..181194144,-!p1@Zbtb46!0.73!27.51!Zbtb46;;chr7:25292076..25292114,+!p4@Zfp428!0.73!13.16!Zfp428;;chr11:121380594..121380609,-!p2@Zfp750!0.73!7.92!Zfp750;;chr2:38567715..38567730,-!p2@Nr5a1!0.73!4.34!Nr5a1;;chr2:104966436..104966455,+!p7@Wt1!0.73!4.34!Wt1;;chr2:104966909..104966920,+!p8@Wt1!0.73!4.34!Wt1;;chr15:102820964..102821006,+!p1@Hoxc8!0.73!4.34!Hoxc8;;chr15:40486854..40486867,+!p7@Zfpm2!0.72!5.23!Zfpm2;;chr7:77505617..77505632,-!p1@Nr2f2!0.71!218.00!Nr2f2;;chr9:36954842..36954908,-!p1@Pknox2!0.71!54.27!Pknox2;;chr10:119913792..119913820,-!p5@Hmga2!0.71!7.48!Hmga2;;chr2:152758938..152758954,-!p2@Foxs1!0.71!5.98!Foxs1;;chr12: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59;;chr7:28764153..28764173,-!p2@Zfp780b!0.25!4.78!Zfp780b;;chr14:22319053..22319105,+!p2@Myst4!0.25!4.64!Myst4;;chr13:67182439..67182491,-!p2@Zfp708!0.25!3.29!Zfp708;;chr5:139060979..139060986,-!p4@Zfp68!0.25!2.24!Zfp68;;chr18:14131045..14131062,-!p3@Zfp521!0.25!1.79!Zfp521;;chr4:135129538..135129558,-!p1@Grhl3!0.25!1.64!Grhl3;;chr10:127176667..127176679,+!p2@Zbtb39!0.25!1.64!Zbtb39;;chrX:48559194..48559210,-!p4@Mbnl3!0.25!1.20!Mbnl3;;chr2:28477452..28477483,-!p1@Gfi1b!0.25!1.20!Gfi1b;;chr15:50721942..50721987,-!p13@Trps1!0.25!1.05!Trps1;;chr3:151873433..151873498,+!p1@Fubp1!0.24!207.53!Fubp1;;chr4:135699731..135699747,+!p1@Id3!0.24!178.07!Id3;;chr12:81213989..81214006,-!p1@Zfp36l1!0.24!81.49!Zfp36l1;;chr16:91044627..91044703,-!p1@Gcfc1!0.24!49.79!Gcfc1;;chr1:15795720..15795756,+!p1@Terf1!0.24!45.15!Terf1;;chr8:77517558..77517597,+!p1@Hmgxb4!0.24!33.79!Hmgxb4;;chr1:136456767..136456790,+!p2@Kdm5b!0.24!32.59!Kdm5b;;chr9:96096707..96096772,+!p1@Tfdp2!0.24!23.18!Tfdp2;;chr7:17199897..17199955,-!p1@Grlf1!0.24!17.19!Grlf1;;chr2:154395581..154395610,-!p1@E2f1!0.24!15.25!E2f1;;chr10:79862134..79862173,-!p3@Mbd3!0.24!11.96!Mbd3;;chr7:30739068..30739108,-!p1@Zfp74!0.24!11.36!Zfp74;;chr4:129055091..129055168,-!p1@Zbtb8a!0.24!8.52!Zbtb8a;;chr11:83943060..83943082,-!p2@Tada2a!0.24!6.43!Tada2a;;chr19:8876976..8877011,+!p1@Zbtb3!0.24!4.49!Zbtb3;;chr1:15795704..15795713,+!p2@Terf1!0.24!3.14!Terf1;;chr5:107125778..107125803,-!p4@Zfp644!0.24!2.69!Zfp644;;chr5:120120667..120120685,+!p3@Tbx3!0.24!2.24!Tbx3;;chr4:126700683..126700704,+!p6@Sfpq!0.24!2.24!Sfpq;;chr13:37917716..37917742,+!p9@Rreb1!0.24!1.94!Rreb1;;chr7:4946990..4947016,-!p4@Zfp579!0.24!1.94!Zfp579;;chr11:99092002..99092018,-!p6@Smarce1!0.24!1.64!Smarce1;;chr6:52167459..52167492,-!p1@Hoxa7!0.24!1.05!Hoxa7;;chr1:120950149..120950160,-!p7@Gli2!0.24!0.90!Gli2;;chr2:105002682..105002691,+!p10@Wt1!0.24!0.75!Wt1;;chr10:5734582..5734595,-!p10@Esr1!0.24!0.75!Esr1;;chr10:5734677..5734702,-!p4@Esr1!0.24!0.75!Esr1;;chr2:74517742..74517758,+!p2@Hoxd11!0.24!0.75!Hoxd11;;chr2:74529917..74529926,+!p5@Hoxd10!0.24!0.75!Hoxd10;;chr17:37139555..37139562,+!p6@Zfp57!0.24!0.75!Zfp57;;chr9:119893782..119893802,-!p1@Csrnp1!0.24!0.75!Csrnp1;;chrX:104863295..104863324,+!p1@Tbx22!0.24!0.75!Tbx22;;chrX:83437070..83437078,+!p2@Nr0b1!0.24!0.75!Nr0b1;;chrX:58146612..58146615,-!p1@Sox3!0.24!0.75!Sox3;;chr13:83663500..83663519,+!p8@Mef2c!0.24!0.75!Mef2c;;chr15:102797225..102797243,+!p2@Hoxc10!0.24!0.75!Hoxc10;;chrX:98624993..98625047,+!p1@Nono!0.23!263.00!Nono;;chr2:168032563..168032642,-!p2@Adnp!0.23!91.95!Adnp;;chr18:5591866..5591900,+!p1@Zeb1!0.23!37.08!Zeb1;;chr9:63605740..63605771,-!p1@Smad3!0.23!21.68!Smad3;;chr10:79862089..79862129,-!p2@Mbd3!0.23!16.15!Mbd3;;chr17:31701694..31701799,+!p1@Pknox1!0.23!16.00!Pknox1;;chr10:107769168..107769215,+!p1@Pawr!0.23!14.95!Pawr;;chr8:109620410..109620462,-!p1@Terf2!0.23!14.20!Terf2;;chr17:23723181..23723236,-!p1@Zfp13!0.23!14.05!Zfp13;;chr7:30691106..30691156,-!p1@Zfp27!0.23!13.16!Zfp27;;chr8:108375881..108375936,-!p1@Cenpt!0.23!12.71!Cenpt;;chr13:67601387..67601448,-!p2@Zfp58!0.23!11.96!Zfp58;;chr17:4994904..4994953,+!p3@Arid1b!0.23!11.21!Arid1b;;chr19:28085676..28085711,-!p2@Rfx3!0.23!8.82!Rfx3;;chr7:50568603..50568655,-!p1@Zfp715!0.23!8.37!Zfp715;;chr2:44968775..44968795,-!p4@Zeb2!0.23!6.58!Zeb2;;chr7:19946556..19946611,+!p1@Ppp1r13l!0.23!5.38!Ppp1r13l;;chr3:14578786..14578807,+!p2@E2f5!0.23!5.08!E2f5;;chr10:79896347..79896358,-!p2@Tcf3!0.23!4.78!Tcf3;;chr13:58503894..58503895,-!p4@Hnrnpk!0.23!4.34!Hnrnpk;;chr11:106134144..106134174,-!p3@Smarcd2!0.23!3.89!Smarcd2;;chr1:138521510..138521526,+!p2@Zfp281!0.23!3.74!Zfp281;;chr3:14578741..14578759,+!p3@E2f5!0.23!3.29!E2f5;;chr14:65977427..65977452,+!p4@Zfp395!0.23!2.99!Zfp395;;chr6:38204274..38204327,-!p3@D630045J12Rik!0.23!2.24!D630045J12Rik;;chr11:106993257..106993268,-!p4@Bptf!0.23!1.94!Bptf;;chr14:47896526..47896539,-!p2@Wdhd1!0.23!1.79!Wdhd1;;chr2:115890469..115890485,-!p7@Meis2!0.23!1.64!Meis2;;chr8:109868335..109868338,+!p3@Nfat5!0.23!1.50!Nfat5;;chr14:52640355..52640369,-!p9@Zfp219!0.23!1.35!Zfp219;;chr7:134169648..134169657,-!p14@Maz!0.23!1.35!Maz;;chr13:83663546..83663560,+!p4@Mef2c!0.23!1.20!Mef2c;;chr16:3872378..3872411,-!p6@Zfp597!0.23!0.90!Zfp597;;chr17:34729193..34729274,+!p1@Pbx2!0.22!70.72!Pbx2;;chr4:82151178..82151262,-!p1@Nfib!0.22!60.55!Nfib;;chr17:32967140..32967197,-!p1@Zfp799!0.22!20.18!Zfp799;;chr7:30601080..30601172,+!p1@Zfp790!0.22!18.24!Zfp790;;chr10:20032304..20032324,+!p2@Bclaf1!0.22!13.61!Bclaf1;;chr3:8666963..8666978,-!p1@Hey1!0.22!8.97!Hey1;;chr2:44965593..44965624,-!p3@Zeb2!0.22!7.77!Zeb2;;chr2:72817659..72817725,-!p5@Sp3!0.22!5.53!Sp3;;chr17:23004042..23004077,-!p2@Zfp945!0.22!5.08!Zfp945;;chr2:83499707..83499708,+!p6@Zc3h15!0.22!4.49!Zc3h15;;chr5:107125838..107125858,-!p2@Zfp644!0.22!4.34!Zfp644;;chr4:131817511..131817537,-!p2@Gmeb1!0.22!4.19!Gmeb1;;chr18:55150011..55150059,-!p3@Zfp608!0.22!4.19!Zfp608;;chr16:4214034..4214070,-!p@chr16:4214034..4214070,-!0.22!3.89!Creb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| |expression_enrichment_score=chr1:140739014..140739032,-!p1@Lhx9!2.29!242.67!Lhx9;;chr10:22539932..22539956,-!p1@Tcf21!2.07!298.73!Tcf21;;chrX:90531838..90531861,+!p1@Arx!2.01!127.09!Arx;;chr2:38570011..38570034,-!p1@Nr5a1!1.97!93.30!Nr5a1;;chr7:147129712..147129774,+!p1@Utf1!1.97!92.55!Utf1;;chr14:63864056..63864102,-!p1@Gata4!1.87!122.30!Gata4;;chr15:102828658..102828678,+!p1@Hoxc6!1.72!50.99!Hoxc6;;chr2:104966766..104966786,+!p1@Wt1!1.60!59.66!Wt1;;chr2:74549968..74549996,+!p1@Hoxd3!1.60!48.29!Hoxd3;;chr2:74529970..74529997,+!p1@Hoxd10!1.52!32.45!Hoxd10;;chr2:104966874..104966907,+!p2@Wt1!1.50!30.95!Wt1;;chr10:119913278..119913298,-!p2@Hmga2!1.46!60.40!Hmga2;;chr19:59533221..59533271,+!p1@Emx2!1.45!32.89!Emx2;;chr17:35642997..35643014,+!p1@Pou5f1!1.36!22.13!Pou5f1;;chr2:74536026..74536039,+!p1@Hoxd9!1.33!20.48!Hoxd9;;chr10:119913310..119913366,-!p1@Hmga2!1.32!150.11!Hmga2;;chr10:119913546..119913583,-!p3@Hmga2!1.29!37.98!Hmga2;;chr7:147129777..147129814,+!p2@Utf1!1.26!17.34!Utf1;;chr2:74550015..74550057,+!p2@Hoxd3!1.24!16.45!Hoxd3;;chr2:104966933..104966966,+!p3@Wt1!1.24!16.45!Wt1;;chr11:85646303..85646329,+!p1@Tbx2!1.23!104.96!Tbx2;;chr8:26958093..26958148,-!p2@Ash2l!1.23!16.15!Ash2l;;chr19:25580110..25580163,+!p1@Dmrt1!1.23!15.85!Dmrt1;;chr17:35642973..35642994,+!p2@Pou5f1!1.23!15.85!Pou5f1;;chr3:54985946..54985981,+!p1@Sohlh2!1.16!13.31!Sohlh2;;chr7:147129680..147129693,+!p3@Utf1!1.15!13.16!Utf1;;chr10:126778916..126778974,-!p1@Gli1!1.14!29.01!Gli1;;chr11:85646263..85646278,+!p2@Tbx2!1.13!31.70!Tbx2;;chr10:119914001..119914078,-!p4@Hmga2!1.13!17.19!Hmga2;;chr2:104966465..104966479,+!p6@Wt1!1.11!11.81!Wt1;;chr2:74536050..74536065,+!p2@Hoxd9!1.09!11.36!Hoxd9;;chr14:63864337..63864381,-!p6@Gata4!1.08!10.91!Gata4;;chr14:63890660..63890687,-!p7@Gata4!1.07!10.62!Gata4;;chr15:102828642..102828653,+!p2@Hoxc6!1.05!10.32!Hoxc6;;chr14:63890459..63890484,-!p4@Gata4!1.05!10.32!Gata4;;chrX:83437105..83437121,+!p1@Nr0b1!1.05!10.17!Nr0b1;;chrX:45245679..45245702,-!p1@Smarca1!1.04!45.60!Smarca1;;chr19:59533139..59533152,+!p2@Emx2!1.01!9.12!Emx2;;chr19:59533163..59533185,+!p3@Emx2!1.00!8.97!Emx2;;chr6:122657610..122657626,+!p1@Nanog,p1@Nanogpd!0.98!8.52!Nanog;;chr12:87811059..87811072,+!p3@Esrrb!0.96!8.22!Esrrb;;chr2:74529998..74530020,+!p2@Hoxd10!0.96!8.07!Hoxd10;;chr14:63890491..63890516,-!p2@Gata4!0.94!7.63!Gata4;;chr12:3891753..3891801,+!p4@Dnmt3a!0.93!12.41!Dnmt3a;;chr19:59533429..59533470,+!p4@Emx2!0.93!7.48!Emx2;;chr17:25707623..25707639,-!p1@Sox8!0.92!32.45!Sox8;;chr15:40486883..40486903,+!p4@Zfpm2!0.92!9.87!Zfpm2;;chr11:69468531..69468557,+!p1@Sox15!0.92!7.33!Sox15;;chr2:74536071..74536083,+!p4@Hoxd9!0.91!7.18!Hoxd9;;chr7:6649134..6649167,-!p1@Zim1!0.90!39.47!Zim1;;chr1:120879128..120879183,-!p3@Gli2!0.90!13.61!Gli2;;chr1:140739042..140739054,-!p2@Lhx9!0.90!7.03!Lhx9;;chr2:152758901..152758925,-!p1@Foxs1!0.89!31.55!Foxs1;;chr11:85646341..85646352,+!p3@Tbx2!0.89!13.61!Tbx2;;chr3:34548909..34548927,+!p1@Sox2!0.88!11.51!Sox2;;chr2:104966662..104966673,+!p4@Wt1!0.88!6.58!Wt1;;chr2:105003277..105003280,+!p5@Wt1!0.88!6.58!Wt1;;chr14:63890519..63890539,-!p3@Gata4!0.87!6.43!Gata4;;chr12:34642510..34642530,+!p1@Twist1!0.86!20.63!Twist1;;chr15:35225845..35225867,+!p1@Osr2!0.84!15.70!Osr2;;chr12:3891810..3891829,+!p2@Dnmt3a!0.83!9.27!Dnmt3a;;chr2:168592636..168592651,-!p1@Sall4!0.83!5.83!Sall4;;chr2:74535796..74535808,+!p3@Hoxd9!0.82!5.53!Hoxd9;;chr12:28027561..28027591,-!p1@Sox11!0.81!38.58!Sox11;;chr5:31271028..31271040,+!p1@Tcf23!0.80!5.38!Tcf23;;chr9:44249274..44249313,-!p1@Foxr1!0.80!5.38!Foxr1;;chr11:85646469..85646488,+!p5@Tbx2!0.79!7.92!Tbx2;;chr2:74549945..74549965,+!p4@Hoxd3!0.79!5.23!Hoxd3;;chr14:63890691..63890718,-!p8@Gata4!0.79!5.23!Gata4;;chr4:122911086..122911112,+!p1@Heyl!0.78!64.59!Heyl;;chr10:119913266..119913277,-!p6@Hmga2!0.78!5.08!Hmga2;;chr1:168168856..168168893,-!p1@Mael!0.78!5.08!Mael;;chr19:10315179..10315241,-!p1@Gm98!0.77!55.62!Gm98;;chr2:77357622..77357704,-!p1@Zfp385b!0.77!14.20!Zfp385b;;chr1:38684260..38684312,-!p2@Aff3!0.76!36.63!Aff3;;chr13:83712735..83712761,+!p9@Mef2c!0.76!4.78!Mef2c;;chr11:84339016..84339044,-!p1@Lhx1!0.76!4.78!Lhx1;;chr7:52471143..52471186,+!p1@Tead2!0.74!53.68!Tead2;;chr18:11052456..11052477,+!p3@Gata6!0.74!15.10!Gata6;;chr8:90483433..90483457,-!p2@Zfp423!0.74!6.28!Zfp423;;chr4:133109285..133109308,+!p1@Nr0b2!0.74!4.49!Nr0b2;;chr2:181194069..181194144,-!p1@Zbtb46!0.73!27.51!Zbtb46;;chr7:25292076..25292114,+!p4@Zfp428!0.73!13.16!Zfp428;;chr11:121380594..121380609,-!p2@Zfp750!0.73!7.92!Zfp750;;chr2:38567715..38567730,-!p2@Nr5a1!0.73!4.34!Nr5a1;;chr2:104966436..104966455,+!p7@Wt1!0.73!4.34!Wt1;;chr2:104966909..104966920,+!p8@Wt1!0.73!4.34!Wt1;;chr15:102820964..102821006,+!p1@Hoxc8!0.73!4.34!Hoxc8;;chr15:40486854..40486867,+!p7@Zfpm2!0.72!5.23!Zfpm2;;chr7:77505617..77505632,-!p1@Nr2f2!0.71!218.00!Nr2f2;;chr9:36954842..36954908,-!p1@Pknox2!0.71!54.27!Pknox2;;chr10:119913792..119913820,-!p5@Hmga2!0.71!7.48!Hmga2;;chr2:152758938..152758954,-!p2@Foxs1!0.71!5.98!Foxs1;;chr12:87811081..87811100,+!p2@Esrrb!0.71!4.19!Esrrb;;chr15:76701495..76701535,-!p3@Zfp251!0.71!4.19!Zfp251;;chr15:40486566..40486600,+!p1@Zfpm2!0.70!26.46!Zfpm2;;chr16:14705961..14705978,+!p2@Snai2!0.70!21.08!Snai2;;chrX:45245644..45245666,-!p2@Smarca1!0.70!14.35!Smarca1;;chr7:89137163..89137200,-!p1@Bnc1!0.70!4.93!Bnc1;;chr19:25580226..25580261,+!p2@Dmrt1!0.70!4.04!Dmrt1;;chr12:12948633..12948651,-!p1@Mycn!0.69!42.61!Mycn;;chr1:38684383..38684394,-!p4@Aff3!0.69!5.53!Aff3;;chr1:9690398..9690410,-!p2@Mybl1!0.69!4.78!Mybl1;;chr2:169458799..169458832,+!p5@Tshz2!0.68!6.73!Tshz2;;chr10:12810631..12810649,+!p1@Plagl1!0.67!110.94!Plagl1;;chr2:25562346..25562433,+!p1@Bmyc!0.67!77.90!Bmyc;;chr18:11052642..11052659,+!p1@Gata6!0.67!20.93!Gata6;;chr7:17647736..17647772,-!p1@Hif3a!0.67!14.50!Hif3a;;chr8:59799772..59799789,+!p1@Hand2!0.67!11.81!Hand2;;chr18:11052485..11052508,+!p2@Gata6!0.67!11.66!Gata6;;chr19:26822880..26822964,+!p2@Smarca2!0.66!34.84!Smarca2;;chr4:84320893..84320910,-!p1@Bnc2!0.66!8.67!Bnc2;;chr10:80809447..80809515,-!p5@Hmg20b!0.66!4.49!Hmg20b;;chr19:59532915..59532940,+!p5@Emx2!0.66!3.59!Emx2;;chr19:59533595..59533628,+!p6@Emx2!0.66!3.59!Emx2;;chr1:140743964..140743976,-!p3@Lhx9!0.66!3.59!Lhx9;;chr16:14705925..14705951,+!p1@Snai2!0.65!27.96!Snai2;;chr17:48061584..48061601,-!p2@Foxp4!0.65!26.17!Foxp4;;chr2:152223441..152223465,-!p2@Sox12!0.65!16.45!Sox12;;chr7:77511403..77511450,-!p3@Nr2f2!0.65!8.07!Nr2f2;;chr15:40486754..40486771,+!p2@Zfpm2!0.65!6.58!Zfpm2;;chr19:25580272..25580305,+!p3@Dmrt1!0.65!3.44!Dmrt1;;chr2:169458519..169458555,+!p2@Tshz2!0.63!15.40!Tshz2;;chrX:98449898..98449913,+!p2@Foxo4!0.63!11.96!Foxo4;;chr15:76500241..76500250,-!p@chr15:76500241..76500250,-!0.63!3.29!Foxh1;;chr2:74543202..74543213,+!p3@Hoxd8!0.63!3.29!Hoxd8;;chr15:103082088..103082136,-!p2@Nfe2!0.62!3.14!Nfe2;;chr6:52190467..52190500,-!p1@Hoxa10!0.62!3.14!Hoxa10;;chr2:169458192..169458247,+!p1@Tshz2!0.60!32.00!Tshz2;;chr4:128483534..128483613,-!p1@Zfp362!0.60!24.82!Zfp362;;chr4:3865501..3865548,-!p1@Plag1!0.60!18.09!Plag1;;chr17:71202822..71202877,-!p3@Tgif1!0.60!10.17!Tgif1;;chr8:87425854..87425891,+!p1@Klf1!0.60!2.99!Klf1;;chr7:77511234..77511302,-!p2@Nr2f2!0.59!23.03!Nr2f2;;chr13:22036953..22037009,+!p1@Zfp184!0.59!8.82!Zfp184;;chr8:90483459..90483475,-!p1@Zfp423!0.58!8.97!Zfp423;;chr19:59534008..59534046,+!p7@Emx2!0.58!2.84!Emx2;;chr19:25580323..25580335,+!p5@Dmrt1!0.58!2.84!Dmrt1;;chr2:74530022..74530033,+!p3@Hoxd10!0.58!2.84!Hoxd10;;chr2:74549915..74549930,+!p6@Hoxd3!0.58!2.84!Hoxd3;;chr4:84192360..84192376,-!p8@Bnc2!0.58!2.84!Bnc2;;chr2:91864661..91864686,-!p1@Creb3l1!0.57!72.67!Creb3l1;;chr2:91864300..91864379,-!p2@Creb3l1!0.57!9.12!Creb3l1;;chr6:52163319..52163342,-!p1@Hoxa3!0.57!4.34!Hoxa3;;chr15:102865088..102865107,+!p1@Hoxc4!0.57!3.89!Hoxc4;;chr14:63890545..63890560,-!p5@Gata4!0.57!2.69!Gata4;;chr7:147129659..147129668,+!p4@Utf1!0.57!2.69!Utf1;;chr8:26958153..26958170,-!p5@Ash2l!0.57!2.69!Ash2l;;chr14:76904313..76904328,+!p1@Tsc22d1!0.56!636.79!Tsc22d1;;chr6:144730427..144730508,-!p1@Sox5!0.56!20.04!Sox5;;chr9:32443818..32443854,+!p2@Ets1!0.56!14.20!Ets1;;chr1:120949949..120950000,-!p1@Gli2!0.56!13.76!Gli2;;chr4:62626594..62626651,+!p1@Zfp618!0.56!11.81!Zfp618;;chr11:85646427..85646451,+!p4@Tbx2!0.56!5.08!Tbx2;;chr11:96153767..96153822,+!p1@Hoxb6!0.56!4.49!Hoxb6;;chr7:20162663..20162678,+!p1@Zfp296!0.56!3.74!Zfp296;;chr7:6683123..6683142,-!p1@Peg3!0.55!169.70!Peg3;;chr17:37139472..37139514,+!p1@Zfp57!0.55!21.53!Zfp57;;chr14:65977324..65977372,+!p2@Zfp395!0.55!17.64!Zfp395;;chr15:102821007..102821021,+!p2@Hoxc8!0.55!2.54!Hoxc8;;chr14:49282415..49282426,-!p4@Otx2!0.55!2.54!Otx2;;chr14:27813852..27813865,+!p1@Hesx1!0.55!2.54!Hesx1;;chr19:25580353..25580364,+!p4@Dmrt1!0.55!2.54!Dmrt1;;chr2:74543103..74543135,+!p4@Hoxd8!0.55!2.54!Hoxd8;;chr1:9690424..9690467,-!p1@Mybl1!0.54!5.98!Mybl1;;chr2:91864449..91864492,-!p3@Creb3l1!0.54!4.49!Creb3l1;;chr11:112643496..112643562,+!p1@Sox9!0.53!114.83!Sox9;;chr7:25292141..25292158,+!p2@Zfp428!0.53!10.32!Zfp428;;chr15:78994907..78994926,-!p1@Sox10!0.53!7.33!Sox10;;chr4:128483731..128483757,-!p4@Zfp362!0.53!6.43!Zfp362;;chr17:28487603..28487626,-!p2@Tead3!0.53!5.83!Tead3;;chr4:84321317..84321332,-!p4@Bnc2!0.53!2.39!Bnc2;;chr15:102839948..102839975,+!p3@Hoxc6!0.53!2.39!Hoxc6;;chr12:84828663..84828679,-!p1@Dpf3!0.52!23.03!Dpf3;;chr19:7342725..7342784,+!p1@Rcor2!0.52!11.81!Rcor2;;chr16:4594853..4594884,+!p3@Glis2!0.52!4.19!Glis2;;chr5:24107676..24107722,-!p4@Smarcd3!0.52!3.44!Smarcd3;;chr16:4594740..4594759,+!p1@Glis2!0.51!33.04!Glis2;;chr7:30954700..30954715,-!p2@LOC677248,p2@Zfp146!0.51!6.28!Zfp146;;chr1:120950098..120950132,-!p2@Gli2!0.51!6.13!Gli2;;chr4:58956447..58956510,+!p1@Zkscan16!0.51!5.83!Zkscan16;;chr11:3189683..3189744,+!p2@Patz1!0.51!5.38!Patz1;;chr9:63869834..63869849,-!p5@Smad6!0.51!4.34!Smad6;;chr15:102820946..102820961,+!p3@Hoxc8!0.51!2.24!Hoxc8;;chr11:5761889..5761969,+!p1@Aebp1!0.50!119.46!Aebp1;;chr5:138187341..138187406,+!p3@Tsc22d4!0.50!30.35!Tsc22d4;;chr6:4839582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59;;chr7:28764153..28764173,-!p2@Zfp780b!0.25!4.78!Zfp780b;;chr14:22319053..22319105,+!p2@Myst4!0.25!4.64!Myst4;;chr13:67182439..67182491,-!p2@Zfp708!0.25!3.29!Zfp708;;chr5:139060979..139060986,-!p4@Zfp68!0.25!2.24!Zfp68;;chr18:14131045..14131062,-!p3@Zfp521!0.25!1.79!Zfp521;;chr4:135129538..135129558,-!p1@Grhl3!0.25!1.64!Grhl3;;chr10:127176667..127176679,+!p2@Zbtb39!0.25!1.64!Zbtb39;;chrX:48559194..48559210,-!p4@Mbnl3!0.25!1.20!Mbnl3;;chr2:28477452..28477483,-!p1@Gfi1b!0.25!1.20!Gfi1b;;chr15:50721942..50721987,-!p13@Trps1!0.25!1.05!Trps1;;chr3:151873433..151873498,+!p1@Fubp1!0.24!207.53!Fubp1;;chr4:135699731..135699747,+!p1@Id3!0.24!178.07!Id3;;chr12:81213989..81214006,-!p1@Zfp36l1!0.24!81.49!Zfp36l1;;chr16:91044627..91044703,-!p1@Gcfc1!0.24!49.79!Gcfc1;;chr1:15795720..15795756,+!p1@Terf1!0.24!45.15!Terf1;;chr8:77517558..77517597,+!p1@Hmgxb4!0.24!33.79!Hmgxb4;;chr1:136456767..136456790,+!p2@Kdm5b!0.24!32.59!Kdm5b;;chr9:96096707..96096772,+!p1@Tfdp2!0.24!23.18!Tfdp2;;chr7:17199897..17199955,-!p1@Grlf1!0.24!17.19!Grlf1;;chr2:154395581..154395610,-!p1@E2f1!0.24!15.25!E2f1;;chr10:79862134..79862173,-!p3@Mbd3!0.24!11.96!Mbd3;;chr7:30739068..30739108,-!p1@Zfp74!0.24!11.36!Zfp74;;chr4:129055091..129055168,-!p1@Zbtb8a!0.24!8.52!Zbtb8a;;chr11:83943060..83943082,-!p2@Tada2a!0.24!6.43!Tada2a;;chr19:8876976..8877011,+!p1@Zbtb3!0.24!4.49!Zbtb3;;chr1:15795704..15795713,+!p2@Terf1!0.24!3.14!Terf1;;chr5:107125778..107125803,-!p4@Zfp644!0.24!2.69!Zfp644;;chr5:120120667..120120685,+!p3@Tbx3!0.24!2.24!Tbx3;;chr4:126700683..126700704,+!p6@Sfpq!0.24!2.24!Sfpq;;chr13:37917716..37917742,+!p9@Rreb1!0.24!1.94!Rreb1;;chr7:4946990..4947016,-!p4@Zfp579!0.24!1.94!Zfp579;;chr11:99092002..99092018,-!p6@Smarce1!0.24!1.64!Smarce1;;chr6:52167459..52167492,-!p1@Hoxa7!0.24!1.05!Hoxa7;;chr1:120950149..120950160,-!p7@Gli2!0.24!0.90!Gli2;;chr2:105002682..105002691,+!p10@Wt1!0.24!0.75!Wt1;;chr10:5734582..5734595,-!p10@Esr1!0.24!0.75!Esr1;;chr10:5734677..5734702,-!p4@Esr1!0.24!0.75!Esr1;;chr2:74517742..74517758,+!p2@Hoxd11!0.24!0.75!Hoxd11;;chr2:74529917..74529926,+!p5@Hoxd10!0.24!0.75!Hoxd10;;chr17:37139555..37139562,+!p6@Zfp57!0.24!0.75!Zfp57;;chr9:119893782..119893802,-!p1@Csrnp1!0.24!0.75!Csrnp1;;chrX:104863295..104863324,+!p1@Tbx22!0.24!0.75!Tbx22;;chrX:83437070..83437078,+!p2@Nr0b1!0.24!0.75!Nr0b1;;chrX:58146612..58146615,-!p1@Sox3!0.24!0.75!Sox3;;chr13:83663500..83663519,+!p8@Mef2c!0.24!0.75!Mef2c;;chr15:102797225..102797243,+!p2@Hoxc10!0.24!0.75!Hoxc10;;chrX:98624993..98625047,+!p1@Nono!0.23!263.00!Nono;;chr2:168032563..168032642,-!p2@Adnp!0.23!91.95!Adnp;;chr18:5591866..5591900,+!p1@Zeb1!0.23!37.08!Zeb1;;chr9:63605740..63605771,-!p1@Smad3!0.23!21.68!Smad3;;chr10:79862089..79862129,-!p2@Mbd3!0.23!16.15!Mbd3;;chr17:31701694..31701799,+!p1@Pknox1!0.23!16.00!Pknox1;;chr10:107769168..107769215,+!p1@Pawr!0.23!14.95!Pawr;;chr8:109620410..109620462,-!p1@Terf2!0.23!14.20!Terf2;;chr17:23723181..23723236,-!p1@Zfp13!0.23!14.05!Zfp13;;chr7:30691106..30691156,-!p1@Zfp27!0.23!13.16!Zfp27;;chr8:108375881..108375936,-!p1@Cenpt!0.23!12.71!Cenpt;;chr13:67601387..67601448,-!p2@Zfp58!0.23!11.96!Zfp58;;chr17:4994904..4994953,+!p3@Arid1b!0.23!11.21!Arid1b;;chr19:28085676..28085711,-!p2@Rfx3!0.23!8.82!Rfx3;;chr7:50568603..50568655,-!p1@Zfp715!0.23!8.37!Zfp715;;chr2:44968775..44968795,-!p4@Zeb2!0.23!6.58!Zeb2;;chr7:19946556..19946611,+!p1@Ppp1r13l!0.23!5.38!Ppp1r13l;;chr3:14578786..14578807,+!p2@E2f5!0.23!5.08!E2f5;;chr10:79896347..79896358,-!p2@Tcf3!0.23!4.78!Tcf3;;chr13:58503894..58503895,-!p4@Hnrnpk!0.23!4.34!Hnrnpk;;chr11:106134144..106134174,-!p3@Smarcd2!0.23!3.89!Smarcd2;;chr1:138521510..138521526,+!p2@Zfp281!0.23!3.74!Zfp281;;chr3:14578741..14578759,+!p3@E2f5!0.23!3.29!E2f5;;chr14:65977427..65977452,+!p4@Zfp395!0.23!2.99!Zfp395;;chr6:38204274..38204327,-!p3@D630045J12Rik!0.23!2.24!D630045J12Rik;;chr11:106993257..106993268,-!p4@Bptf!0.23!1.94!Bptf;;chr14:47896526..47896539,-!p2@Wdhd1!0.23!1.79!Wdhd1;;chr2:115890469..115890485,-!p7@Meis2!0.23!1.64!Meis2;;chr8:109868335..109868338,+!p3@Nfat5!0.23!1.50!Nfat5;;chr14:52640355..52640369,-!p9@Zfp219!0.23!1.35!Zfp219;;chr7:134169648..134169657,-!p14@Maz!0.23!1.35!Maz;;chr13:83663546..83663560,+!p4@Mef2c!0.23!1.20!Mef2c;;chr16:3872378..3872411,-!p6@Zfp597!0.23!0.90!Zfp597;;chr17:34729193..34729274,+!p1@Pbx2!0.22!70.72!Pbx2;;chr4:82151178..82151262,-!p1@Nfib!0.22!60.55!Nfib;;chr17:32967140..32967197,-!p1@Zfp799!0.22!20.18!Zfp799;;chr7:30601080..30601172,+!p1@Zfp790!0.22!18.24!Zfp790;;chr10:20032304..20032324,+!p2@Bclaf1!0.22!13.61!Bclaf1;;chr3:8666963..8666978,-!p1@Hey1!0.22!8.97!Hey1;;chr2:44965593..44965624,-!p3@Zeb2!0.22!7.77!Zeb2;;chr2:72817659..72817725,-!p5@Sp3!0.22!5.53!Sp3;;chr17:23004042..23004077,-!p2@Zfp945!0.22!5.08!Zfp945;;chr2:83499707..83499708,+!p6@Zc3h15!0.22!4.49!Zc3h15;;chr5:107125838..107125858,-!p2@Zfp644!0.22!4.34!Zfp644;;chr4:131817511..131817537,-!p2@Gmeb1!0.22!4.19!Gmeb1;;chr18:55150011..55150059,-!p3@Zfp608!0.22!4.19!Zfp608;;chr16:4214034..4214070,-!p@chr16:4214034..4214070,-!0.22!3.89!Creb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| ||
Line 45: | Line 45: | ||
|is_obsolete= | |is_obsolete= | ||
|library_id=CNhs11031 | |library_id=CNhs11031 | ||
|library_id_phase_based= | |library_id_phase_based=2:CNhs11031 | ||
|microRNAs= | |||
|microRNAs_nn= | |||
|microRNAs_nonnovel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer/#/mouse#cage;sample;389 | |||
|microRNAs_novel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer_novel/#/mouse#cage;sample;389 | |||
|mm10bam=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/mm10_v2/basic/mouse.tissue.hCAGE/testis%252c%2520embryo%2520E13.CNhs11031.389-23F5.mm10.nobarcode.bam | |||
|mm10ctss=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/mm10_v2/basic/mouse.tissue.hCAGE/testis%252c%2520embryo%2520E13.CNhs11031.389-23F5.mm10.nobarcode.ctss.bed.gz | |||
|mm9bam=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/mouse.tissue.hCAGE/testis%252c%2520embryo%2520E13.CNhs11031.389-23F5.mm9.nobarcode.bam | |||
|mm9ctss=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/mouse.tissue.hCAGE/testis%252c%2520embryo%2520E13.CNhs11031.389-23F5.mm9.ctss.bed.gz | |||
|mm9fasta=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/mouse.tissue.hCAGE/testis%252c%2520embryo%2520E13.CNhs11031.389-23F5.mm9.nobarcode.rdna.fa.gz | |||
|name=testis, embryo E13 | |name=testis, embryo E13 | ||
|namespace=FANTOM5 | |namespace=FANTOM5 | ||
Line 51: | Line 60: | ||
|profile_cagescan=,,, | |profile_cagescan=,,, | ||
|profile_hcage=CNhs11031,LSID732,release008,COMPLETED | |profile_hcage=CNhs11031,LSID732,release008,COMPLETED | ||
|profile_rnaseq= | |profile_rnaseq= | ||
|profile_srnaseq=,,, | |profile_srnaseq=,,, | ||
|repeat_enrich_byfamily=-0.0159982154761825,0,0,0,0,0,-0.154448502768632,0,0,0,0,0.158098503922483,0,0,0,0,0,0,0.0505443934364495,0,0,0,0,0,0,0,0,0,0,0,0,0,0.266459549009751,0,0.113620214605082,0,0,0,0.0687673328601242,0,-0.122812810615636,0.128437989924987,0.00822142034559903,0,0,0,0,0,0,0,0,0,0,0.0605152268483434,0.0605152268483434,0.0476146670416413,0.203594761728394,0,0,0,-0.0428469550828748,0,0,0,0,0,0.0258607790015079,0.0310078556300524,0.00284233919702115,0.0171238978890727,0,0.163970701477458,0.0168785086801104,0,0.242437744319024,0,0.00502920439515496,-0.0260888351153183,-0.392320119012175,0.0821017871281962,0,0,0,0,0,0,-0.166054332644373,-0.290268253956248,-0.212992894928859,0,0,0,0,0 | |repeat_enrich_byfamily=-0.0159982154761825,0,0,0,0,0,-0.154448502768632,0,0,0,0,0.158098503922483,0,0,0,0,0,0,0.0505443934364495,0,0,0,0,0,0,0,0,0,0,0,0,0,0.266459549009751,0,0.113620214605082,0,0,0,0.0687673328601242,0,-0.122812810615636,0.128437989924987,0.00822142034559903,0,0,0,0,0,0,0,0,0,0,0.0605152268483434,0.0605152268483434,0.0476146670416413,0.203594761728394,0,0,0,-0.0428469550828748,0,0,0,0,0,0.0258607790015079,0.0310078556300524,0.00284233919702115,0.0171238978890727,0,0.163970701477458,0.0168785086801104,0,0.242437744319024,0,0.00502920439515496,-0.0260888351153183,-0.392320119012175,0.0821017871281962,0,0,0,0,0,0,-0.166054332644373,-0.290268253956248,-0.212992894928859,0,0,0,0,0 | ||
Line 88: | Line 97: | ||
|top_motifs=ZNF143:1.65695412506;NANOG{mouse}:1.44581631445;NFY{A,B,C}:1.44381900466;ZNF238:1.24380950503;NR6A1:1.24241490988;RBPJ:1.23508571005;NRF1:1.2284449455;E2F1..5:1.22372290769;YY1:1.08369291334;MYBL2:1.0811779458;RXR{A,B,G}:1.07619077441;EP300:1.05200776713;FOXD3:1.02971622267;PATZ1:0.986586585947;ZNF384:0.983526001311;FOXP1:0.95183386547;HIF1A:0.938896930434;NKX6-1,2:0.925033152647;HBP1_HMGB_SSRP1_UBTF:0.918001677371;GFI1B:0.911067789345;GFI1:0.90670288887;TFAP2{A,C}:0.890222293133;ZBTB16:0.875309954857;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:0.846287565906;NR5A1,2:0.843258021079;SOX17:0.83972036232;GATA4:0.836465221172;CRX:0.80194099717;PITX1..3:0.775712172422;ELK1,4_GABP{A,B1}:0.750872391915;ZNF423:0.70232183024;STAT1,3:0.697252802609;TEF:0.675862559324;HOX{A5,B5}:0.673890956651;SP1:0.641822307823;MZF1:0.630326579792;SOX{8,9,10}:0.577890814757;TFDP1:0.558626955009;NFIX:0.554829263319;EGR1..3:0.522209737088;XCPE1{core}:0.517428019006;IKZF1:0.460717881965;SOX2:0.43709470408;MAZ:0.432673853781;TLX1..3_NFIC{dimer}:0.432570241993;SOX5:0.431268784446;MTE{core}:0.423658891355;TEAD1:0.411404445836;TOPORS:0.405901231513;CDC5L:0.402105847927;LEF1_TCF7_TCF7L1,2:0.387089591381;STAT5{A,B}:0.386485897496;bHLH_family:0.360343141519;GTF2I:0.356307989319;HSF1,2:0.350119376439;RREB1:0.34773178081;GLI1..3:0.344373725529;BREu{core}:0.309894905561;ADNP_IRX_SIX_ZHX:0.295193157014;ALX1:0.269661903514;NKX2-2,8:0.269417484901;MYB:0.267204055417;ESRRA:0.259378063666;IKZF2:0.247481440611;MED-1{core}:0.246419659057;AIRE:0.230225087657;POU6F1:0.207009724882;RXR{A,B,G}_{NR1H2,PPAR}dimers:0.206559361613;FOXP3:0.200363079296;PAX4:0.189156915874;EVI1:0.187821849529;GATA6:0.177769979403;RORA:0.169919669876;ZIC1..3:0.158104664611;AHR_ARNT_ARNT2:0.158039297849;PBX1:0.14205399988;CREB1:0.126381267665;GCM1,2:0.115533479138;ELF1,2,4:0.113586680686;ZFP161:0.11220055252;NR1H4:0.110249719254;PRRX1,2:0.101007598465;HOXA9_MEIS1:0.0976424423398;PAX1,9:0.0951266984597;NKX3-1:0.0414999404758;CUX2:0.0325976830356;VSX1,2:0.0269563205598;PAX6:0.0264118018885;EN1,2:0.0251996494145;T:0.00927752448293;NKX2-1,4:-0.010297204259;HIC1:-0.0313328665894;KLF4:-0.0465345381268;NANOG:-0.0667505143123;PDX1:-0.0743586310306;HMX1:-0.0811264791881;UFEwm:-0.085210154821;TFAP4:-0.0977665555244;POU2F1..3:-0.104066229988;POU1F1:-0.110556346439;LHX3,4:-0.121376214729;TFAP2B:-0.123700651161;NFATC1..3:-0.14324987243;SPIB:-0.152335761971;BPTF:-0.159834983942;GTF2A1,2:-0.161917197316;RFX1:-0.162039197842;HAND1,2:-0.165631852394;FOX{D1,D2}:-0.17743647307;TAL1_TCF{3,4,12}:-0.18929849867;TBX4,5:-0.198948995578;FOXN1:-0.212037934588;ATF4:-0.212770150028;HES1:-0.21322949331;HMGA1,2:-0.222328135926;RUNX1..3:-0.223152386314;MEF2{A,B,C,D}:-0.228618152866;PAX5:-0.232007665834;OCT4_SOX2{dimer}:-0.243135193178;REST:-0.246194444099;GZF1:-0.251639189823;ETS1,2:-0.26352438206;SPZ1:-0.265205829045;PAX8:-0.267731954226;FOXL1:-0.305889261018;RFX2..5_RFXANK_RFXAP:-0.316331583534;DBP:-0.317388122329;ESR1:-0.322628631955;TFCP2:-0.3371733968;ONECUT1,2:-0.359769305498;CDX1,2,4:-0.3617609634;FOXM1:-0.393842542211;SRF:-0.413187668532;ZNF148:-0.414260850585;MYFfamily:-0.415383180917;SPI1:-0.417838162843;HNF4A_NR2F1,2:-0.45034730651;TP53:-0.458831944681;POU5F1:-0.46845434922;NFKB1_REL_RELA:-0.471403778983;HOX{A4,D4}:-0.493784605818;FOXQ1:-0.495827138575;ZBTB6:-0.50188429667;ATF2:-0.558893111519;POU3F1..4:-0.558919832216;SREBF1,2:-0.588315585114;ALX4:-0.604654711677;HLF:-0.614014663272;FOXA2:-0.61603123978;MTF1:-0.61974611519;SMAD1..7,9:-0.627793818873;BACH2:-0.645888613143;PRDM1:-0.651581650826;NKX2-3_NKX2-5:-0.658090805752;HNF1A:-0.665988049051;ARID5B:-0.668808320881;DMAP1_NCOR{1,2}_SMARC:-0.677151888868;TBP:-0.704647912564;FOXO1,3,4:-0.727583031668;NHLH1,2:-0.752330210423;RXRA_VDR{dimer}:-0.78261762167;MAFB:-0.804377159555;NFIL3:-0.812173104376;NFE2:-0.822600252475;AR:-0.837567757289;ATF6:-0.882831312823;TGIF1:-0.885952072957;IRF1,2:-0.901615017379;FOS_FOS{B,L1}_JUN{B,D}:-0.902377964705;CEBPA,B_DDIT3:-0.93177893638;JUN:-0.941606246121;NR3C1:-0.970058755146;SNAI1..3:-1.02944767799;PAX2:-1.05200792932;FOSL2:-1.05239369245;IRF7:-1.06129396646;NKX3-2:-1.06708560418;EBF1:-1.06795572201;NFE2L1:-1.11444818171;NFE2L2:-1.11623919489;FOX{F1,F2,J1}:-1.13966637748;ATF5_CREB3:-1.1427580264;MYOD1:-1.16387926957;LMO2:-1.24293126388;ZEB1:-1.25507480988;PPARG:-1.26290114387;STAT2,4,6:-1.32555385649;TLX2:-1.33699504142;FOX{I1,J2}:-1.51756596666 | |top_motifs=ZNF143:1.65695412506;NANOG{mouse}:1.44581631445;NFY{A,B,C}:1.44381900466;ZNF238:1.24380950503;NR6A1:1.24241490988;RBPJ:1.23508571005;NRF1:1.2284449455;E2F1..5:1.22372290769;YY1:1.08369291334;MYBL2:1.0811779458;RXR{A,B,G}:1.07619077441;EP300:1.05200776713;FOXD3:1.02971622267;PATZ1:0.986586585947;ZNF384:0.983526001311;FOXP1:0.95183386547;HIF1A:0.938896930434;NKX6-1,2:0.925033152647;HBP1_HMGB_SSRP1_UBTF:0.918001677371;GFI1B:0.911067789345;GFI1:0.90670288887;TFAP2{A,C}:0.890222293133;ZBTB16:0.875309954857;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:0.846287565906;NR5A1,2:0.843258021079;SOX17:0.83972036232;GATA4:0.836465221172;CRX:0.80194099717;PITX1..3:0.775712172422;ELK1,4_GABP{A,B1}:0.750872391915;ZNF423:0.70232183024;STAT1,3:0.697252802609;TEF:0.675862559324;HOX{A5,B5}:0.673890956651;SP1:0.641822307823;MZF1:0.630326579792;SOX{8,9,10}:0.577890814757;TFDP1:0.558626955009;NFIX:0.554829263319;EGR1..3:0.522209737088;XCPE1{core}:0.517428019006;IKZF1:0.460717881965;SOX2:0.43709470408;MAZ:0.432673853781;TLX1..3_NFIC{dimer}:0.432570241993;SOX5:0.431268784446;MTE{core}:0.423658891355;TEAD1:0.411404445836;TOPORS:0.405901231513;CDC5L:0.402105847927;LEF1_TCF7_TCF7L1,2:0.387089591381;STAT5{A,B}:0.386485897496;bHLH_family:0.360343141519;GTF2I:0.356307989319;HSF1,2:0.350119376439;RREB1:0.34773178081;GLI1..3:0.344373725529;BREu{core}:0.309894905561;ADNP_IRX_SIX_ZHX:0.295193157014;ALX1:0.269661903514;NKX2-2,8:0.269417484901;MYB:0.267204055417;ESRRA:0.259378063666;IKZF2:0.247481440611;MED-1{core}:0.246419659057;AIRE:0.230225087657;POU6F1:0.207009724882;RXR{A,B,G}_{NR1H2,PPAR}dimers:0.206559361613;FOXP3:0.200363079296;PAX4:0.189156915874;EVI1:0.187821849529;GATA6:0.177769979403;RORA:0.169919669876;ZIC1..3:0.158104664611;AHR_ARNT_ARNT2:0.158039297849;PBX1:0.14205399988;CREB1:0.126381267665;GCM1,2:0.115533479138;ELF1,2,4:0.113586680686;ZFP161:0.11220055252;NR1H4:0.110249719254;PRRX1,2:0.101007598465;HOXA9_MEIS1:0.0976424423398;PAX1,9:0.0951266984597;NKX3-1:0.0414999404758;CUX2:0.0325976830356;VSX1,2:0.0269563205598;PAX6:0.0264118018885;EN1,2:0.0251996494145;T:0.00927752448293;NKX2-1,4:-0.010297204259;HIC1:-0.0313328665894;KLF4:-0.0465345381268;NANOG:-0.0667505143123;PDX1:-0.0743586310306;HMX1:-0.0811264791881;UFEwm:-0.085210154821;TFAP4:-0.0977665555244;POU2F1..3:-0.104066229988;POU1F1:-0.110556346439;LHX3,4:-0.121376214729;TFAP2B:-0.123700651161;NFATC1..3:-0.14324987243;SPIB:-0.152335761971;BPTF:-0.159834983942;GTF2A1,2:-0.161917197316;RFX1:-0.162039197842;HAND1,2:-0.165631852394;FOX{D1,D2}:-0.17743647307;TAL1_TCF{3,4,12}:-0.18929849867;TBX4,5:-0.198948995578;FOXN1:-0.212037934588;ATF4:-0.212770150028;HES1:-0.21322949331;HMGA1,2:-0.222328135926;RUNX1..3:-0.223152386314;MEF2{A,B,C,D}:-0.228618152866;PAX5:-0.232007665834;OCT4_SOX2{dimer}:-0.243135193178;REST:-0.246194444099;GZF1:-0.251639189823;ETS1,2:-0.26352438206;SPZ1:-0.265205829045;PAX8:-0.267731954226;FOXL1:-0.305889261018;RFX2..5_RFXANK_RFXAP:-0.316331583534;DBP:-0.317388122329;ESR1:-0.322628631955;TFCP2:-0.3371733968;ONECUT1,2:-0.359769305498;CDX1,2,4:-0.3617609634;FOXM1:-0.393842542211;SRF:-0.413187668532;ZNF148:-0.414260850585;MYFfamily:-0.415383180917;SPI1:-0.417838162843;HNF4A_NR2F1,2:-0.45034730651;TP53:-0.458831944681;POU5F1:-0.46845434922;NFKB1_REL_RELA:-0.471403778983;HOX{A4,D4}:-0.493784605818;FOXQ1:-0.495827138575;ZBTB6:-0.50188429667;ATF2:-0.558893111519;POU3F1..4:-0.558919832216;SREBF1,2:-0.588315585114;ALX4:-0.604654711677;HLF:-0.614014663272;FOXA2:-0.61603123978;MTF1:-0.61974611519;SMAD1..7,9:-0.627793818873;BACH2:-0.645888613143;PRDM1:-0.651581650826;NKX2-3_NKX2-5:-0.658090805752;HNF1A:-0.665988049051;ARID5B:-0.668808320881;DMAP1_NCOR{1,2}_SMARC:-0.677151888868;TBP:-0.704647912564;FOXO1,3,4:-0.727583031668;NHLH1,2:-0.752330210423;RXRA_VDR{dimer}:-0.78261762167;MAFB:-0.804377159555;NFIL3:-0.812173104376;NFE2:-0.822600252475;AR:-0.837567757289;ATF6:-0.882831312823;TGIF1:-0.885952072957;IRF1,2:-0.901615017379;FOS_FOS{B,L1}_JUN{B,D}:-0.902377964705;CEBPA,B_DDIT3:-0.93177893638;JUN:-0.941606246121;NR3C1:-0.970058755146;SNAI1..3:-1.02944767799;PAX2:-1.05200792932;FOSL2:-1.05239369245;IRF7:-1.06129396646;NKX3-2:-1.06708560418;EBF1:-1.06795572201;NFE2L1:-1.11444818171;NFE2L2:-1.11623919489;FOX{F1,F2,J1}:-1.13966637748;ATF5_CREB3:-1.1427580264;MYOD1:-1.16387926957;LMO2:-1.24293126388;ZEB1:-1.25507480988;PPARG:-1.26290114387;STAT2,4,6:-1.32555385649;TLX2:-1.33699504142;FOX{I1,J2}:-1.51756596666 | ||
|xref= | |xref= | ||
|zenbu_report=https://fantom.gsc.riken.jp/zenbu/reports/#miRNA_expression_atlas_mouse;search_select_hide=table111:389-23F5;search_select_hide=table117:389-23F5 | |||
}} | }} |
Latest revision as of 19:14, 4 June 2020
Name: | testis, embryo E13 |
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Species: | Mouse (Mus musculus) |
Library ID: | CNhs11031 |
Sample type: | developmental |
Genomic View: | UCSC |
CAGEd-oPOSSUM: | link |
ZENBU report : | link |
Additional information | ||||||||||||||||||||||||||||
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Sample information
RNA information
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CAGE Accession numbers | ||||||||||||||||||||||||||||||||||||||||||||||
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Download raw sequence, BAM & CTSS | ||||||||||||||
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Relative expression to median (log10)
Transcription factors with enriched expression in this sampleRanked list of transcription factor promoter expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.
Co-expression clusters with enriched expression in this sampleRanked list of co-expression cluster expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed. <br>Analyst:NA <br><br>link to dataset.<br>data
CNhs11031
0 | 0 |
1 | 0 |
10 | 0 |
100 | 0 |
1000 | 0 |
1001 | -0.0366 |
1002 | 0.276 |
1003 | -0.122 |
1004 | 0 |
1005 | -0.0389 |
1006 | -0.104 |
1007 | 0.133 |
1008 | 0 |
1009 | -0.0572 |
101 | 0.136 |
1010 | 0 |
1011 | -0.0261 |
1012 | 0 |
1013 | -0.188 |
1014 | 0.114 |
1015 | 0.231 |
1016 | 0.262 |
1017 | 0 |
1018 | 0 |
1019 | 0 |
102 | 0 |
1020 | 0 |
1021 | 0 |
1022 | -0.0271 |
1023 | 0 |
1024 | -0.0899 |
1025 | 0 |
1026 | 0 |
1027 | 0 |
1028 | 0 |
1029 | -0.0543 |
103 | 0.0354 |
1030 | 0 |
1031 | 0.244 |
1032 | -0.121 |
1033 | 0 |
1034 | 0 |
1035 | 0.0605 |
1036 | -0.0157 |
1037 | 0 |
1038 | 0.0143 |
1039 | -0.0649 |
104 | 0 |
1040 | 0.0401 |
1041 | 0 |
Repeat families with enriched expression in this sample<b>Summary:</b>Ranked list of repeat family expression in this sample relative tothe median expression in the FANTOM5 collection is shown. Value is log10transformed.<br><b>Analyst:</b>NA<br><br>link to dataset.<br>data
TFBS(DNA)motifs over-represented in proximal region of promoters active in this sample
JASPAR motifs<b>Summary:</b>Association of JASPAR motif to the promoter expression in thissample. Pearson's correlation between the number of TFBSs estimated byusing the position-weight matrix for each promoter and its expression isexpressed as Z-score by taking the ones based on random position-weightmatrix, and the tail probability of the normal distribution correspondingto the Z-score is taken as the resulting P-value. Lower P-value indicatesmore (non-random) association of the motif to promoter expression<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data
library id: CNhs11031
FANTOM5 phase1 novel unique motifs<b>Summary:</b>Association of the 169 novel and unique motifs discovered in FANTOM5 phase1 in this sample. Among the de-novo motifs discovered by DMF, HOMER,ChIPMunk, and ScanAll, only novel motifs are selected after comparison with known motif sets, and their clustering based on MACRO-APE resulted in169 novel and unique motifs. Their association to the promoter expression is evaluated in the same way to the JASPAR motif above<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data
library id: CNhs11031
Novel motif | Logo | P-value |
---|---|---|
1 | 1 | 0.107 |
10 | 10 | 0.331 |
100 | 100 | 0.705 |
101 | 101 | 0.404 |
102 | 102 | 0.637 |
103 | 103 | 0.181 |
104 | 104 | 0.841 |
105 | 105 | 0.159 |
106 | 106 | 0.00395 |
107 | 107 | 0.048 |
108 | 108 | 0.675 |
109 | 109 | 0.399 |
11 | 11 | 0.28 |
110 | 110 | 0.649 |
111 | 111 | 0.336 |
112 | 112 | 0.396 |
113 | 113 | 0.436 |
114 | 114 | 0.0973 |
115 | 115 | 0.579 |
116 | 116 | 0.426 |
117 | 117 | 0.943 |
118 | 118 | 0.68 |
119 | 119 | 0.217 |
12 | 12 | 0.642 |
120 | 120 | 0.529 |
121 | 121 | 0.403 |
122 | 122 | 0.655 |
123 | 123 | 0.168 |
124 | 124 | 0.253 |
125 | 125 | 0.0327 |
126 | 126 | 0.805 |
127 | 127 | 0.118 |
128 | 128 | 0.00317 |
129 | 129 | 0.0274 |
13 | 13 | 0.945 |
130 | 130 | 0.377 |
131 | 131 | 0.541 |
132 | 132 | 0.157 |
133 | 133 | 0.823 |
134 | 134 | 0.454 |
135 | 135 | 0.976 |
136 | 136 | 0.101 |
137 | 137 | 0.632 |
138 | 138 | 0.871 |
139 | 139 | 0.0446 |
14 | 14 | 0.145 |
140 | 140 | 0.371 |
141 | 141 | 0.0447 |
142 | 142 | 0.934 |
143 | 143 | 0.077 |
144 | 144 | 0.124 |
145 | 145 | 0.918 |
146 | 146 | 0.561 |
147 | 147 | 0.508 |
148 | 148 | 0.141 |
149 | 149 | 0.165 |
15 | 15 | 0.146 |
150 | 150 | 0.832 |
151 | 151 | 0.0613 |
152 | 152 | 0.343 |
153 | 153 | 0.526 |
154 | 154 | 0.871 |
155 | 155 | 0.599 |
156 | 156 | 2.03758e-4 |
157 | 157 | 0.608 |
158 | 158 | 0.394 |
159 | 159 | 0.027 |
160 | 160 | 0.902 |
161 | 161 | 0.759 |
162 | 162 | 0.623 |
163 | 163 | 0.0915 |
164 | 164 | 0.905 |
165 | 165 | 0.15 |
166 | 166 | 0.891 |
167 | 167 | 0.437 |
168 | 168 | 0.201 |
169 | 169 | 0.286 |
17 | 17 | 0.0964 |
18 | 18 | 0.171 |
19 | 19 | 0.756 |
2 | 2 | 0.515 |
20 | 20 | 0.378 |
21 | 21 | 0.806 |
22 | 22 | 0.674 |
23 | 23 | 0.0452 |
24 | 24 | 0.896 |
25 | 25 | 0.37 |
26 | 26 | 0.735 |
27 | 27 | 0.238 |
28 | 28 | 0.388 |
29 | 29 | 0.873 |
3 | 3 | 0.319 |
30 | 30 | 0.678 |
31 | 31 | 0.136 |
32 | 32 | 0.154 |
33 | 33 | 0.816 |
34 | 34 | 0.833 |
35 | 35 | 0.0972 |
36 | 36 | 0.206 |
37 | 37 | 0.223 |
38 | 38 | 0.629 |
39 | 39 | 0.866 |
4 | 4 | 0.681 |
40 | 40 | 0.494 |
41 | 41 | 0.152 |
42 | 42 | 0.625 |
43 | 43 | 0.209 |
44 | 44 | 0.275 |
45 | 45 | 0.462 |
46 | 46 | 0.17 |
47 | 47 | 0.357 |
48 | 48 | 0.367 |
49 | 49 | 0.128 |
5 | 5 | 0.114 |
50 | 50 | 0.987 |
51 | 51 | 0.754 |
52 | 52 | 0.219 |
53 | 53 | 0.65 |
54 | 54 | 0.389 |
55 | 55 | 0.689 |
56 | 56 | 0.241 |
57 | 57 | 0.649 |
58 | 58 | 0.251 |
59 | 59 | 0.154 |
6 | 6 | 0.827 |
60 | 60 | 0.0742 |
61 | 61 | 0.512 |
62 | 62 | 0.0922 |
63 | 63 | 0.164 |
64 | 64 | 0.708 |
65 | 65 | 0.167 |
66 | 66 | 0.582 |
67 | 67 | 0.679 |
68 | 68 | 2.93841e-4 |
69 | 69 | 0.808 |
7 | 7 | 0.442 |
70 | 70 | 0.00356 |
71 | 71 | 0.254 |
72 | 72 | 0.545 |
73 | 73 | 0.411 |
74 | 74 | 0.494 |
75 | 75 | 0.529 |
76 | 76 | 0.452 |
77 | 77 | 0.309 |
78 | 78 | 0.528 |
79 | 79 | 0.713 |
8 | 8 | 0.258 |
80 | 80 | 0.151 |
81 | 81 | 0.219 |
82 | 82 | 0.528 |
83 | 83 | 0.499 |
84 | 84 | 0.154 |
85 | 85 | 0.0106 |
86 | 86 | 0.315 |
87 | 87 | 0.523 |
88 | 88 | 0.427 |
89 | 89 | 0.0727 |
9 | 9 | 0.844 |
90 | 90 | 0.126 |
91 | 91 | 0.316 |
92 | 92 | 0.105 |
93 | 93 | 0.561 |
94 | 94 | 0.322 |
95 | 95 | 0.757 |
96 | 96 | 0.285 |
97 | 97 | 0.831 |
98 | 98 | 0.0811 |
99 | 99 | 0.818 |
de novo motifs identified by HOMER in promoters active in this sample<b>Summary:</b>The result of HOMER in this sample is shown.<br><b>Analyst:</b>NA <br>
library id: CNhs11031
FANTOM5 (FF) ontology
Direct parent terms
Ancestor terms (non development)<b>Summary:</b>Connected ontology terms with is_a, part_of or located_in relationship <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source data<br>data
UBERON: Anatomy
0000468 (multi-cellular organism)
0000922 (embryo)
0000473 (testis)
0000991 (gonad)
0000479 (tissue)
0005156 (reproductive structure)
0000466 (immaterial anatomical entity)
0000062 (organ)
0004120 (mesoderm-derived structure)
0000061 (anatomical structure)
0000465 (material anatomical entity)
0000990 (reproductive system)
0002553 (anatomical cavity)
0000467 (anatomical system)
0001062 (anatomical entity)
0000480 (anatomical group)
0003135 (male reproductive organ)
0003133 (reproductive organ)
0002323 (body cavity)
0000464 (anatomical space)
0004458 (body cavity or lining)
0010317 (germ layer / neural crest derived structure)
0003101 (male organism)
0000079 (male reproductive system)
FF: FANTOM5
0000102 (sample by type)
0000101 (sample by species)
0000103 (mouse sample)
0000001 (sample)
0000999 (fetal tissue sample)
0000292 (embryonic day sample - mouse)
0000004 (tissue sample)
0000293 (mouse embryonic day 13 sample)
0011332 (mouse testis- embryo E13 sample)
Ancestor terms (development)<b>Summary:</b>Connected ontology terms with develops_from, derives_from or preceded_by relationship <br><b>Analyst:</b> Hideya Kawaji <br><br>link to source data<br>data
UBERON:0009117 (indifferent gonad)
UBERON:0002532 (epiblast (generic))
UBERON:0006603 (presumptive mesoderm)
UBERON:0005564 (gonad primordium)
UBERON:0010316 (germ layer / neural crest)
FF:0000294 (mouse embryonic day 11 sample)