FF:10698-109G5: Difference between revisions

Latest revision as of 14:33, 3 June 2020

Name:	pancreatic carcinoma cell line:NOR-P1
Species:	Human (Homo sapiens)
Library ID:	CNhs11832
Sample type:	cell lines
Genomic View:	UCSC
RefEX:	Specific genes
CAGEd-oPOSSUM:	link
ZENBU report :	link

Additional information

Sample information

strain	NA
tissue	pancreas
dev stage	NA
sex	unknown
age	NA
cell type	unclassifiable
cell line	NOR-P1
company	RIKEN Bioresource centre
collaboration	Yukio Nakamura (RIKEN BRC)
External link for information	[{{{sample_info_link}}} {{{sample_info_link}}}]

RNA information

lot number	NA
catalog number	NA
sample type	total RNA
extraction protocol (Details)	OP-RNA-extraction-totalRNA-miRNeasy_Mini-v1.0

CAGE Accession numbers

Method		Sample accession id
CAGE		SAMD00005790

Library accession numbers

Library id		Method		Exp. accession id		Run accession id
CNhs11832		CAGE		DRX007980		DRR008852

Accession ID Hg19

Library id		BAM		CTSS
CNhs11832		DRZ000277		DRZ001662

Accession ID Hg38

Library id		BAM		CTSS
CNhs11832		DRZ011627		DRZ013012

Download raw sequence, BAM & CTSS

Hg19

Fasta	BAM	CTSS
download	download	donwload

Hg38

BAM	CTSS
download	donwload

Relative expression to median (log10)

Transcription factors with enriched expression in this sampleRanked list of transcription factor promoter expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.

Co-expression clusters with enriched expression in this sampleRanked list of co-expression cluster expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed. Analyst:NA link to dataset. data

Coexpression cluster	score
C0-CD14-Eosinophils-Neutrophils-Basophils-CD34-immature-Peripheral	0
C1-testis-epididymis-embryonic-medulla-pituitary-trachea-caudate	0
C10-occipital-temporal-parietal-brain-duodenum-Neurons-Neural	0
C100-rhabdomyosarcoma-gastric-pineal-Wilms-cervical-mesodermal-endometrial	0
C101-small-cerebellum-maxillary-colon-parietal-epididymis-merkel	0
C102-neuroblastoma-testicular-pituitary-carcinosarcoma-rectum-acantholytic-iPS	0
C103-CD4-CD8-Natural-Peripheral-Whole-Neutrophils-Basophils	0
C104-Mast-Basophils-immature-CD14-CD34-eye-Natural	0
C105-heart-skeletal-occipital-hippocampus-acute-Sebocyte-penis	0.338
C106-Hep2-epitheloid-placenta-cervical-rectal-anaplastic-glassy	0
C107-Neutrophils-CD14-Eosinophils-Monocytederived-Whole-Peripheral-blood	0
C108-breast-hepatoblastoma-MCF7-parotid-salivary-submaxillary-prostate	0
C109-Reticulocytes-non-acute-Hodgkin-Burkitt-retinoblastoma-lymphoma	0.434
C11-cerebellum-medulla-pons-parietal-occipital-middle-medial	0
C110-leukemia-chronic-Eosinophils-acute-Whole-CD34-Lymphatic	0
C111-medulla-lung-trachea-testis-caudate-epididymis-throat	0
C112-gastric-pancreas-temporal-duodenum-small-extraskeletal-adrenal	0
C113-thyroid-throat-lung-lymph-small-colon-trachea	0
C114-teratocarcinoma-medulloblastoma-carcinosarcoma-iPS-anaplastic-acute-neuroblastoma	0
C115-pituitary-Neural-caudate-putamen-amygdala-medulla-hippocampus	0
C116-myeloma-xeroderma-tonsil-CD19-spleen-lymph-trachea	0
C117-serous-clear-kidney-neuroectodermal-mesothelioma-endometrial-Intestinal	0
C118-cerebellum-parietal-occipital-medial-middle-frontal-insula	0
C119-CD4-CD8-Natural-Neutrophils-CD14-Peripheral-CD19	0
C12-Mast-Basophils-immature-chorionic-mature-CD14-Eosinophils	0
C120-immature-salivary-tongue-skin-cervical-CD14-CD34	0
C121-NK-Natural-CD8-CD4-anaplastic-chronic-B	0
C122-chronic-Reticulocytes-skeletal-leukemia-acute-colon-Tracheal	0
C123-CD19-Natural-CD8-CD4-CD14-Peripheral-Basophils	0
C124-small-temporal-duodenum-colon-gall-signet-Hepatocyte	0
C125-mucinous-alveolar-mesothelioma-Smooth-lung-CD14-Nucleus	0
C126-gastrointestinal-argyrophil-smallcell-merkel-bile-insula-brain	0
C127-maxillary-small-hepatoblastoma-hepatocellular-alveolar-colon-argyrophil	0
C128-testicular-choriocarcinoma-H9-teratocarcinoma-pancreatic-iPS-HES3GFP	0
C129-liver-Hepatocyte-colon-duodenum-temporal-testicular-small	0
C13-Neutrophils-Eosinophils-CD14-Monocytederived-Whole-Peripheral-CD4	0
C130-iPS-HES3GFP-H9-teratocarcinoma-testicular-colon-Alveolar	0
C131-lung-trachea-Alveolar-thyroid-umbilical-throat-skin	0
C132-acute-small-Dendritic-Macrophage-CD14-Neutrophils-Monocytederived	0
C133-signet-gall-small-kidney-colon-ductal-adenocarcinoma	0
C134-skeletal-diaphragm-tongue-throat-Skeletal-skin-penis	0
C135-neuroblastoma-retinoblastoma-carcinoid-choriocarcinoma-testicular-acute-rectum	0
C136-Wilms-extraskeletal-anaplastic-rhabdomyosarcoma-cholangiocellular-nonsmall-neuroectodermal	0
C137-large-ductal-melanoma-cervical-Endothelial-Smooth-chronic	0
C138-diffuse-Burkitt-lymphangiectasia-lymphoma-acute-CD19-pineal	0
C139-astrocytoma-skin-salivary-gall-serous-Mallassezderived-renal	0
C14-Whole-blood-Reticulocytes-liver-Neutrophils-Eosinophils-spleen	0
C140-Renal-Endothelial-Hepatic-Lymphatic-heart-lung-spleen	0
C141-Hodgkin-acute-thymus-chronic-vein-CD4-B	0
C142-Preadipocyte-Fibroblast-hepatic-Ewing-Adipocyte-Olfactory-Hair	0
C143-Monocytederived-CD14-Macrophage-Dendritic-Basophils-CD14CD16-Osteoblast	0
C144-CD4-tonsil-NK-appendix-CD8-splenic-mycosis	0
C145-neuroblastoma-peripheral-neuroectodermal-neuroepithelioma-carcinoid-adult-extraskeletal	0
C146-lymphangiectasia-lymphoma-gall-lymph-tonsil-gastric-transitionalcell	0
C147-Neutrophils-Eosinophils-CD4-CD14-CD8-Natural-Peripheral	0.00772
C148-kidney-small-epididymis-pancreas-serous-duodenum-temporal	0
C149-occipital-medial-brain-amygdala-parietal-cerebral-cerebellum	0
C15-anaplastic-small-skeletal-neuroblastoma-parietal-temporal-tongue	0
C150-merkel-carcinoid-nonsmall-gastrointestinal-argyrophil-pineal-small	0
C151-CD14-Natural-Basophils-CD8-Eosinophils-CD4-Mast	0
C152-peripheral-neuroectodermal-neuroepithelioma-neuroblastoma-testicular-carcinoid-lung	0
C153-rhabdomyosarcoma-liposarcoma-pancreatic-somatostatinoma-Reticulocytes-lymphoma-testicular	0
C154-adenocarcinoma-Mesenchymal-Cardiac-small-sacrococcigeal-Smooth-Prostate	0
C155-pituitary-placenta-nonsmall-cervical-smallcell-choriocarcinoma-epitheloid	0
C156-plasma-splenic-hereditary-B-large-xeroderma-b	0
C157-testicular-H9-testis-iPS-teratocarcinoma-colon-trachea	0
C158-adrenal-gastric-temporal-parietal-duodenum-caudate-putamen	0
C159-choriocarcinoma-pancreatic-placenta-chorionic-testicular-bronchioalveolar-seminal	0.252
C16-medial-amygdala-occipital-parietal-olfactory-putamen-brain	0
C160-medulla-Hepatocyte-retina-corpus-liver-pineal-cerebral	0
C161-mesothelioma-Mesothelial-acute-mesenchymal-extraskeletal-renal-placenta	0
C162-spinal-locus-medulla-substantia-thalamus-globus-diencephalon	0
C163-Skeletal-skeletal-Pericytes-Hepatic-rhabdomyosarcoma-throat-mesenchymal	0
C164-signet-corpus-optic-mucinous-substantia-salivary-choriocarcinoma	0
C165-epithelioid-Adipocyte-mesothelioma-myxofibrosarcoma-lung-gastric-Mesothelial	0
C166-Macrophage-Monocytederived-Dendritic-adipose-lymph-CD14-lung	0
C167-Basophils-Mast-Eosinophils-Neutrophils-Peripheral-Whole-CD4	0
C168-Mast-CD14-immature-Basophils-Eosinophils-CD34-Peripheral	0
C169-hereditary-adult-gall-lymphangiectasia-chronic-b-choriocarcinoma	0
C17-Mast-CD14-Monocytederived-Lymphatic-Smooth-mesenchymal-Macrophage	0
C170-epitheloid-cervical-Hep2-keratoacanthoma-adult-neuroblastoma-signet	0
C171-merkel-neuroblastoma-pineal-retinoblastoma-carcinoid-small-eye	0
C172-chorionic-skeletal-tongue-amniotic-liver-gastrointestinal-Pericytes	0
C173-Adipocyte-mature-skin-left-Hepatocyte-Osteoblast-adipose	0
C174-CD14-Neutrophils-Smooth-mesothelioma-embryonic-Monocytederived-Eosinophils	0
C175-Eosinophils-Neutrophils-CD4-Basophils-CD19-CD8-Natural	0
C176-Eosinophils-Neutrophils-Mast-CD14-CD4-Basophils-CD19	8.786346e-4
C177-melanoma-Melanocyte-mesenchymal-retina-Mallassezderived-Gingival-squamous	0
C178-spleen-liver-Hepatocyte-b-lymph-vein-thymus	0
C179-CD19-Peripheral-lymphoma-blood-lymph-spleen-tonsil	0
C18-CD4-CD8-thymus-Whole-Peripheral-Natural-blood	0
C180-skeletal-heart-Hepatocyte-acute-occipital-hippocampus-middle	0.233
C181-liposarcoma-somatostatinoma-neuroblastoma-mesothelioma-nonsmall-small-Alveolar	0
C182-renal-mature-mesothelioma-lung-Mammary-Adipocyte-acute	0
C183-acute-non-CD34-diffuse-CD133-myeloma-Burkitt	0
C184-somatostatinoma-smallcell-nonsmall-small-gastrointestinal-pineal-thyroid	0
C185-small-adrenal-gastric-Mesenchymal-acute-HES3GFP-testis	0
C186-squamous-papillotubular-large-Tracheal-oral-Small-epidermoid	0
C187-migratory-immature-Dendritic-CD19-CD14-Monocytederived-Macrophage	0
C188-left-heart-tongue-skeletal-Skeletal-diaphragm-throat	0
C189-b-splenic-tonsil-CD19-lymph-appendix-spleen	0
C19-embryonic-testis-cord-chronic-CD14-NK-mesothelioma	0
C190-colon-small-rectum-duodenum-appendix-temporal-oral	0
C191-leiomyoblastoma-Mast-parietal-acute-bone-neuroepithelioma-embryonic	0
C192-Neutrophils-CD14-Peripheral-Eosinophils-CD8-Natural-CD4	0
C193-Mesenchymal-Adipocyte-mature-Cardiac-heart-CD14CD16-CD14	0
C194-MCF7-breast-prostate-Intestinal-diffuse-Wilms-Alveolar	0
C195-Small-Gingival-Bronchial-Smooth-mesenchymal-Urothelial-Tracheal	0
C196-testicular-iPS-H9-teratocarcinoma-HES3GFP-choriocarcinoma-endometrial	0
C197-tongue-esophagus-tonsil-salivary-cervix-nasal-Gingival	0
C198-Mesenchymal-Hair-Hepatic-Fibroblast-Smooth-tenocyte-Pericytes	0
C199-glioblastoma-B-osteosarcoma-Fibroblast-heart-rhabdomyosarcoma-myxofibrosarcoma	0
C2-Eosinophils-Neutrophils-CD14-Whole-Basophils-Peripheral-Mast	0
C20-heart-left-skeletal-diaphragm-tongue-umbilical-throat	0
C200-seminal-Cardiac-Smooth-Hair-submaxillary-Neutrophils-mixed	-0.0284
C201-colon-small-adenocarcinoma-duodenum-temporal-signet-gall	0
C202-salivary-skin-penis-tongue-uterus-cervical-immature	0
C203-acute-NK-chronic-CD133-lymphoma-immature-Dendritic	0
C204-Smooth-nasal-CD4-CD19-CD8-CD14-CD34	0
C205-mycosis-cord-hairy-xeroderma-CD4-B-b	0
C206-melanoma-somatostatinoma-nonsmall-small-neuroblastoma-smallcell-pituitary	0
C207-Corneal-Keratinocyte-Esophageal-Mammary-Bronchial-Urothelial-Sebocyte	0
C208-skin-amniotic-papillotubular-salivary-umbilical-Alveolar-serous	0
C209-acute-myelodysplastic-CD34-granulocyte-CD133-liver-spleen	0
C21-cord-mycosis-hairy-xeroderma-adult-CD4-anaplastic	0
C210-Burkitt-lymphoma-appendix-acute-diffuse-CD19-tonsil	0
C211-small-Hepatocyte-liver-colon-temporal-duodenum-kidney	0
C212-chronic-acute-Whole-Reticulocytes-leukemia-blood-CD34	0
C213-CD14-Natural-CD8-CD4-Basophils-Eosinophils-Peripheral	0
C214-Neurons-Neural-duodenum-temporal-occipital-parietal-brain	0
C215-chronic-acute-peripheral-Hepatocyte-osteosarcoma-NK-immature	0
C216-osteosarcoma-Smooth-Mesenchymal-large-neuroectodermal-acute-CD34	0
C217-carcinoid-neuroectodermal-mature-mesodermal-colon-acute-occipital	0
C218-tonsil-lymph-CD19-spleen-colon-appendix-salivary	0
C219-nasal-Basophils-amniotic-Melanocyte-CD14-Osteoblast-duodenum	0
C22-CD4-CD8-Natural-Basophils-CD14-Peripheral-CD19	0
C220-Adipocyte-mature-left-breast-skin-liver-adipose	0
C221-alveolar-Osteoblast-Myoblast-mesenchymal-liposarcoma-Smooth-hepatocellular	0
C222-Melanocyte-Tracheal-Neutrophils-seminal-Smooth-Hair-Chondrocyte	-0.0217
C223-Chondrocyte-basal-renal-Fibroblast-Smooth-spindle-Synoviocyte	0
C224-clear-serous-pleomorphic-choriocarcinoma-mesothelioma-amniotic-renal	0
C225-ductal-alveolar-giant-prostate-salivary-squamous-Tracheal	0
C226-Corneal-Keratinocyte-Esophageal-Urothelial-Mammary-Bronchial-Tracheal	0.101
C227-chorionic-amniotic-Mesenchymal-Placental-gastric-diaphragm-tongue	0.907
C228-colon-Intestinal-Prostate-hepatoblastoma-hepatocellular-testis-adult	0
C229-Mesenchymal-CD4-Melanocyte-acute-skeletal-left-heart	0.063
C23-CD4-CD8-Natural-Peripheral-Basophils-CD19-CD14	0
C230-aorta-normal-heart-penis-osteosarcoma-basal-lung	0
C231-Mesothelial-mesenchymal-mesothelioma-Fibroblast-Preadipocyte-leiomyoma-mycosis	0
C232-teratocarcinoma-HES3GFP-H9-iPS-testicular-neuroblastoma-cerebellum	0
C233-uterus-cervix-ovary-epididymis-colon-rectum-MCF7	0
C234-oral-epidermoid-malignant-cervical-ductal-lung-keratoacanthoma	0
C235-Intestinal-Prostate-liver-colon-small-kidney-pancreas	0
C236-CD14-Neutrophils-Monocytederived-renal-Eosinophils-testis-mesothelioma	0
C237-acute-breast-testicular-hepatoblastoma-chronic-argyrophil-Bronchial	0
C238-stomach-gall-breast-duodenum-temporal-MCF7-smallcell	0
C239-CD4-lymphangiectasia-CD8-NK-mycosis-Renal-hairy	0
C24-pineal-eye-retina-retinoblastoma-medulloblastoma-small-cerebral	0
C240-Adipocyte-Preadipocyte-Osteoblast-Chondrocyte-tenocyte-Synoviocyte-mesenchymal	0
C241-Reticulocytes-chronic-Tracheal-Hodgkin-Endothelial-Hair-thymus	-0.00906
C242-acute-Chondrocyte-myelodysplastic-granulocyte-biphenotypic-Fibroblast-stomach	0
C243-Chondrocyte-trachea-Synoviocyte-mesodermal-renal-Fibroblast-Ewing	0
C244-CD14-Monocytederived-Hepatocyte-heart-Neutrophils-acute-Macrophage	0
C245-prostate-penis-salivary-esophagus-kidney-Neutrophils-Pancreatic	0
C246-Neutrophils-Eosinophils-Whole-CD14-CD14CD16-Basophils-migratory	0
C247-pons-locus-medulla-spinal-paracentral-medial-occipital	0
C248-iPS-Aortic-Hep2-amygdala-acute-medial-Myoblast	0
C249-nonsmall-small-smallcell-occipital-somatostatinoma-maxillary-medial	0
C25-small-colon-temporal-duodenum-liver-Hepatocyte-gall	0
C250-Mast-Neutrophils-CD14-Eosinophils-CD8-Peripheral-CD4	0
C251-gall-tonsil-trachea-CD14-salivary-throat-tongue	0
C252-hepatic-Olfactory-sacrococcigeal-leiomyoma-normal-Synoviocyte-glioblastoma	0
C253-spleen-rhabdomyosarcoma-Hepatocyte-small-uterus-liver-rectum	0
C254-prostate-rhabdomyosarcoma-seminal-Fibroblast-transitionalcell-Smooth-Iris	0
C255-Wilms-leiomyoblastoma-kidney-adrenal-MCF7-epithelioid-Mast	0
C256-occipital-caudate-amygdala-medial-thalamus-hippocampus-medulla	0
C257-pineal-insula-frontal-occipital-temporal-medial-paracentral	0
C258-hepatoblastoma-hepatocellular-signet-colon-Intestinal-Prostate-gastric	0
C259-Preadipocyte-Adipocyte-Fibroblast-Chondrocyte-tenocyte-normal-Ewing	0
C26-Eosinophils-Neutrophils-CD14-CD14CD16-Basophils-Monocytederived-Whole	0
C260-acute-chronic-Natural-NK-Basophils-biphenotypic-blood	0
C261-locus-medial-parietal-pons-diencephalon-olfactory-spinal	0
C262-breast-MCF7-skeletal-Reticulocytes-mucinous-hepatoblastoma-Wilms	0
C263-cervical-keratoacanthoma-tongue-skin-esophagus-throat-tonsil	0
C264-giant-keratoacanthoma-colon-fibrosarcoma-HES3GFP-Hep2-acute	0
C265-CD4-Eosinophils-CD14-Natural-CD19-Basophils-CD8	0
C266-acute-chronic-leukemia-small-choriocarcinoma-hepatoma-Mast	0
C267-pancreatic-placenta-choriocarcinoma-testicular-teratocarcinoma-chorionic-clear	0.972
C268-Mallassezderived-Urothelial-Gingival-Small-Bronchial-Tracheal-Prostate	0
C269-Basophils-Mast-Eosinophils-mature-CD14-chorionic-CD4	0
C27-pancreas-temporal-duodenum-salivary-ductus-umbilical-lung	0
C270-CD4-Fibroblast-acute-iPS-Aortic-CD34-Smooth	0.00397
C271-pineal-spinal-locus-globus-medulla-thalamus-cerebellum	0
C272-CD19-CD4-CD8-Whole-Peripheral-lymph-tonsil	0
C273-Neutrophils-CD14-Eosinophils-Monocytederived-CD4-Natural-Mast	0
C274-CD14-Mast-immature-Basophils-mature-vagina-Hepatocyte	0
C275-pons-medulla-cerebellum-locus-thalamus-diencephalon-spinal	0
C276-mesothelioma-kidney-renal-small-clear-cerebellum-Renal	0
C277-mesothelioma-epithelioid-thyroid-extraskeletal-alveolar-glioblastoma-adenocarcinoma	0
C278-amygdala-hippocampus-insula-medial-putamen-temporal-olfactory	0
C279-parietal-cerebellum-occipital-temporal-middle-duodenum-medial	0
C28-thymus-acute-vein-Hodgkin-chronic-throat-Dendritic	0
C280-Mast-Natural-CD19-CD8-Eosinophils-CD34-CD4	0
C281-Hodgkin-Reticulocytes-chronic-NK-acute-retinoblastoma-small	0.401
C282-acute-B-tonsil-CD19-submaxillary-lymph-throat	0
C283-tenocyte-Chondrocyte-mesenchymal-Macrophage-pleomorphic-Synoviocyte-cholangiocellular	0
C284-parietal-occipital-medial-temporal-olfactory-locus-hippocampus	0
C285-cervical-Hep2-small-colon-temporal-duodenum-bronchogenic	0
C286-cerebellum-occipital-optic-parietal-globus-caudate-medial	0
C287-Hepatocyte-Chondrocyte-Adipocyte-Synoviocyte-liver-tenocyte-mesenchymal	0
C288-Chondrocyte-Renal-Pericytes-Fibroblast-aorta-Smooth-Meningeal	0
C289-chorionic-skeletal-heart-Mast-amniotic-granulosa-left	0
C29-mature-adipose-Adipocyte-breast-Lymphatic-vein-heart	0
C290-Eosinophils-CD14-Basophils-Mast-CD4-CD8-immature	0
C291-spinal-substantia-retina-medulla-tongue-skeletal-trachea	0
C292-Mesenchymal-skin-umbilical-Adipocyte-mesenchymal-Chondrocyte-skeletal	0
C293-CD14-CD14CD16-Basophils-Peripheral-immature-Eosinophils-CD34	0
C294-CD14-Macrophage-Monocytederived-CD14CD16-Neutrophils-Basophils-Peripheral	0
C295-Fibroblast-Smooth-Myoblast-Chondrocyte-hepatic-Synoviocyte-Preadipocyte	0
C296-gall-small-mesothelioma-acute-bronchioalveolar-epidermoid-mixed	0
C297-Eosinophils-CD4-Basophils-Natural-Neutrophils-CD8-Peripheral	0
C298-small-optic-substantia-thalamus-diencephalon-globus-occipital	0
C299-CD14CD16-Eosinophils-Neutrophils-CD14-Whole-Basophils-blood	0
C3-occipital-temporal-insula-medial-postcentral-frontal-amygdala	0
C30-thyroid-throat-mesothelioma-mucinous-trachea-chorionic-mesenchymal	0
C300-CD4-CD8-NK-Natural-blood-mycosis-Basophils	0
C301-Smooth-mesenchymal-Endothelial-Hepatic-basal-hepatic-chorionic	0
C302-acute-peripheral-Neutrophils-NK-myelodysplastic-CD34-carcinoid	0
C303-CD14-Basophils-Peripheral-Eosinophils-CD14CD16-Neutrophils-Whole	0
C305-heart-skeletal-smooth-left-bladder-penis-esophagus	0
C31-skeletal-tongue-diaphragm-throat-penis-skin-trachea	0
C32-middle-occipital-parietal-hippocampus-amygdala-medial-olfactory	0
C33-Reticulocytes-liver-Whole-blood-chronic-acute-spleen	0
C34-placenta-chorionic-choriocarcinoma-mesothelioma-Wilms-Smooth-bile	0
C35-caudate-putamen-diencephalon-nucleus-globus-thalamus-insula	0
C36-B-b-splenic-plasma-xeroderma-adrenal-Burkitt	0
C37-salivary-submaxillary-parotid-seminal-tongue-ductus-trachea	0
C38-extraskeletal-rhabdomyosarcoma-adrenal-rectal-mesothelioma-lung-Wilms	0
C39-epididymis-ductus-seminal-testis-acute-thyroid-CD133	0
C4-optic-corpus-substantia-medulla-spinal-thalamus-globus	0
C40-eye-retina-Lens-pineal-tongue-retinoblastoma-small	0
C41-retina-eye-medulla-Retinal-medulloblastoma-kidney-pineal	0
C42-small-lung-maxillary-pharyngeal-Mesenchymal-Wilms-colon	0
C43-ductus-seminal-duodenum-temporal-gall-prostate-bladder	0
C44-Dendritic-CD19-CD133-granulocyte-acute-thymus-immature	0
C45-testicular-choriocarcinoma-H9-teratocarcinoma-Wilms-pancreatic-iPS	0
C46-acute-Hodgkin-thymus-CD8-chronic-CD4-merkel	0
C47-CD19-Burkitt-acute-xeroderma-tonsil-lymphoma-appendix	0
C48-smooth-bladder-esophagus-colon-penis-aorta-uterus	0
C49-H9-iPS-testicular-HES3GFP-teratocarcinoma-hepatoblastoma-choriocarcinoma	0
C5-Hepatocyte-liver-hepatocellular-Intestinal-kidney-small-pancreas	0
C50-chorionic-placenta-amniotic-migratory-smallcell-chronic-choriocarcinoma	0
C51-kidney-mesothelioma-renal-signet-gall-lung-pancreas	0
C52-adult-NK-chronic-cord-testis-embryonic-myeloma	0
C53-medulloblastoma-pineal-retinoblastoma-small-retina-eye-pituitary	0
C54-Dendritic-Macrophage-Monocytederived-CD14-leiomyoma-adipose-immature	0
C55-hepatocellular-Intestinal-liver-Prostate-fibrosarcoma-Hepatocyte-hepatoblastoma	0
C56-heart-left-umbilical-skeletal-penis-diaphragm-tongue	0
C57-Neutrophils-Eosinophils-Whole-CD4-CD8-CD19-Natural	0
C58-Melanocyte-melanoma-retina-Retinal-eye-migratory-H9	0
C59-Smooth-Fibroblast-Mesenchymal-tenocyte-Ewing-skin-hepatic	0
C6-CD14-Eosinophils-Basophils-Peripheral-CD34-Natural-immature	0
C60-esophagus-tonsil-throat-tongue-uterus-cervix-cervical	0
C61-migratory-Dendritic-immature-Macrophage-xeroderma-cord-b	0
C62-Burkitt-tonsil-CD19-submaxillary-spleen-salivary-lymph	0
C63-neuroectodermal-neuroblastoma-carcinoid-peripheral-chronic-neuroepithelioma-acute	0
C64-Mast-chronic-acute-immature-chorionic-Basophils-Dendritic	0
C65-CD14-Eosinophils-Monocytederived-Basophils-immature-Macrophage-Neutrophils	0
C66-cerebellum-middle-occipital-parietal-medial-amygdala-hippocampus	0
C67-CD14-Monocytederived-Macrophage-dura-Dendritic-spleen-lung	0
C68-amniotic-chorionic-Placental-salivary-placenta-tongue-mesothelioma	0
C69-anaplastic-CD14-cord-hairy-mycosis-adult-NK	0
C7-CD14-Eosinophils-Neutrophils-Smooth-Basophils-Macrophage-Mast	0
C70-parotid-submaxillary-salivary-throat-trachea-aorta-tongue	0
C71-Monocytederived-Macrophage-CD14-Dendritic-Osteoblast-leiomyoma-Prostate	0
C72-skeletal-tongue-throat-heart-diaphragm-penis-left	0
C73-pineal-eye-retina-caudate-cerebellum-left-parietal	0
C74-splenic-B-b-plasma-xeroderma-lymphoma-hairy	0
C75-Eosinophils-Natural-CD8-Basophils-CD14-CD4-Peripheral	0
C76-argyrophil-gastrointestinal-temporal-duodenum-neuroblastoma-merkel-smallcell	0
C77-Saos2-osteosarcoma-Neutrophils-Natural-Chondrocyte-Basophils-CD8	0
C78-lymphoma-plasma-tonsil-appendix-lymph-seminal-trachea	0
C79-chorionic-Chondrocyte-Cardiac-Smooth-Fibroblast-Preadipocyte-Mesenchymal	0
C8-Natural-CD8-Basophils-CD4-CD14-Peripheral-CD34	0
C80-immature-migratory-CD14-Dendritic-splenic-cord-Mast	0
C81-trachea-salivary-throat-aorta-eye-submaxillary-parotid	0
C82-Basophils-CD14-Eosinophils-Natural-Peripheral-immature-CD34	0
C83-choriocarcinoma-pancreatic-placenta-chorionic-HES3GFP-testicular-amniotic	0.41
C84-choriocarcinoma-pancreatic-Wilms-Mallassezderived-thymus-salivary-colon	0.183
C85-neuroblastoma-carcinoid-retinoblastoma-small-pineal-rhabdomyosarcoma-medulloblastoma	0
C86-colon-carcinoid-small-neuroectodermal-giant-large-neuroepithelioma	0
C87-retinoblastoma-left-nonsmall-heart-small-diaphragm-bronchogenic	0
C88-Melanocyte-melanoma-Macrophage-Mesenchymal-migratory-Dendritic-Monocytederived	0
C89-small-retinoblastoma-medulloblastoma-iPS-acantholytic-eye-bronchogenic	0
C9-skeletal-diaphragm-tongue-throat-penis-heart-left	0
C90-neuroectodermal-peripheral-neuroepithelioma-neuroblastoma-carcinoid-parietal-putamen	0
C91-Fibroblast-Smooth-mesenchymal-Mesothelial-Small-Preadipocyte-Hair	0
C92-CD14CD16-CD14-Eosinophils-Basophils-Neutrophils-Macrophage-Whole	0
C93-chronic-acute-leukemia-acantholytic-medulloblastoma-testis-papillotubular	0
C94-smallcell-adrenal-lung-nonsmall-small-somatostatinoma-teratocarcinoma	0
C95-lung-aorta-trachea-penis-Alveolar-throat-endometrioid	0
C96-non-acute-tonsil-spleen-Burkitt-lymphoma-appendix	0
C97-small-smallcell-gastrointestinal-argyrophil-putamen-duodenum-brain	0
C98-CD8-Natural-Basophils-blood-CD4-Peripheral-Whole	0
C99-hairy-mycosis-submaxillary-salivary-cord-kidney-parotid	0

Repeat families with enriched expression in this sampleSummary:Ranked list of repeat family expression in this sample relative tothe median expression in the FANTOM5 collection is shown. Value is log10transformed. Analyst:NA link to dataset. data

TFBS(DNA)motifs over-represented in proximal region of promoters active in this sample

JASPAR motifsSummary:Association of JASPAR motif to the promoter expression in thissample. Pearson's correlation between the number of TFBSs estimated byusing the position-weight matrix for each promoter and its expression isexpressed as Z-score by taking the ones based on random position-weightmatrix, and the tail probability of the normal distribution correspondingto the Z-score is taken as the resulting P-value. Lower P-value indicatesmore (non-random) association of the motif to promoter expression Analyst: Michiel de Hoon link to dataset. data

library id: CNhs11832

Jaspar motif	Logo	P-value
MA0002.2	MA0002.2	0.0678
MA0003.1	MA0003.1	0.881
MA0004.1	MA0004.1	0.135
MA0006.1	MA0006.1	0.849
MA0007.1	MA0007.1	0.71
MA0009.1	MA0009.1	0.858
MA0014.1	MA0014.1	0.396
MA0017.1	MA0017.1	0.768
MA0018.2	MA0018.2	0.5
MA0019.1	MA0019.1	0.0142
MA0024.1	MA0024.1	0.00494
MA0025.1	MA0025.1	0.063
MA0027.1	MA0027.1	0.916
MA0028.1	MA0028.1	0.0349
MA0029.1	MA0029.1	0.742
MA0030.1	MA0030.1	0.915
MA0031.1	MA0031.1	0.419
MA0035.2	MA0035.2	0.00824
MA0038.1	MA0038.1	0.921
MA0039.2	MA0039.2	0.00774
MA0040.1	MA0040.1	0.535
MA0041.1	MA0041.1	0.269
MA0042.1	MA0042.1	0.498
MA0043.1	MA0043.1	0.522
MA0046.1	MA0046.1	0.556
MA0047.2	MA0047.2	0.454
MA0048.1	MA0048.1	0.178
MA0050.1	MA0050.1	2.71472e-7
MA0051.1	MA0051.1	1.75127e-4
MA0052.1	MA0052.1	0.0077
MA0055.1	MA0055.1	0.00126
MA0057.1	MA0057.1	0.677
MA0058.1	MA0058.1	0.148
MA0059.1	MA0059.1	0.0677
MA0060.1	MA0060.1	0.51
MA0061.1	MA0061.1	0.0386
MA0062.2	MA0062.2	0.449
MA0065.2	MA0065.2	0.0178
MA0066.1	MA0066.1	0.82
MA0067.1	MA0067.1	0.125
MA0068.1	MA0068.1	0.979
MA0069.1	MA0069.1	0.996
MA0070.1	MA0070.1	0.126
MA0071.1	MA0071.1	0.192
MA0072.1	MA0072.1	0.504
MA0073.1	MA0073.1	0.885
MA0074.1	MA0074.1	0.862
MA0076.1	MA0076.1	0.358
MA0077.1	MA0077.1	0.412
MA0078.1	MA0078.1	0.629
MA0079.2	MA0079.2	0.441
MA0080.2	MA0080.2	1.02569e-6
MA0081.1	MA0081.1	0.0159
MA0083.1	MA0083.1	0.0123
MA0084.1	MA0084.1	0.701
MA0087.1	MA0087.1	0.687
MA0088.1	MA0088.1	0.0297
MA0090.1	MA0090.1	0.0698
MA0091.1	MA0091.1	0.521
MA0092.1	MA0092.1	0.581
MA0093.1	MA0093.1	0.146
MA0099.2	MA0099.2	8.71502e-5
MA0100.1	MA0100.1	0.938
MA0101.1	MA0101.1	0.024
MA0102.2	MA0102.2	0.515
MA0103.1	MA0103.1	1.38567e-4
MA0104.2	MA0104.2	0.0292
MA0105.1	MA0105.1	0.716
MA0106.1	MA0106.1	0.287
MA0107.1	MA0107.1	0.00422
MA0108.2	MA0108.2	8.42506e-7
MA0111.1	MA0111.1	0.45
MA0112.2	MA0112.2	0.415
MA0113.1	MA0113.1	0.974
MA0114.1	MA0114.1	0.0168
MA0115.1	MA0115.1	0.204
MA0116.1	MA0116.1	0.47
MA0117.1	MA0117.1	0.74
MA0119.1	MA0119.1	0.53
MA0122.1	MA0122.1	0.813
MA0124.1	MA0124.1	0.785
MA0125.1	MA0125.1	0.594
MA0131.1	MA0131.1	0.228
MA0135.1	MA0135.1	0.00555
MA0136.1	MA0136.1	6.01921e-6
MA0137.2	MA0137.2	0.0176
MA0138.2	MA0138.2	0.0406
MA0139.1	MA0139.1	0.875
MA0140.1	MA0140.1	0.0818
MA0141.1	MA0141.1	0.702
MA0142.1	MA0142.1	0.624
MA0143.1	MA0143.1	0.852
MA0144.1	MA0144.1	0.146
MA0145.1	MA0145.1	0.73
MA0146.1	MA0146.1	0.272
MA0147.1	MA0147.1	0.0222
MA0148.1	MA0148.1	0.468
MA0149.1	MA0149.1	0.181
MA0150.1	MA0150.1	0.378
MA0152.1	MA0152.1	0.208
MA0153.1	MA0153.1	0.236
MA0154.1	MA0154.1	0.992
MA0155.1	MA0155.1	0.398
MA0156.1	MA0156.1	0.0104
MA0157.1	MA0157.1	0.831
MA0159.1	MA0159.1	0.702
MA0160.1	MA0160.1	0.947
MA0162.1	MA0162.1	0.802
MA0163.1	MA0163.1	0.169
MA0164.1	MA0164.1	0.979
MA0258.1	MA0258.1	0.128
MA0259.1	MA0259.1	0.0543

FANTOM5 phase1 novel unique motifsSummary:Association of the 169 novel and unique motifs discovered in FANTOM5 phase1 in this sample. Among the de-novo motifs discovered by DMF, HOMER,ChIPMunk, and ScanAll, only novel motifs are selected after comparison with known motif sets, and their clustering based on MACRO-APE resulted in169 novel and unique motifs. Their association to the promoter expression is evaluated in the same way to the JASPAR motif above Analyst: Michiel de Hoon link to dataset. data

library id: CNhs11832

Novel motif	Logo	P-value
1	1	0.0442
10	10	0.345
100	100	0.0426
101	101	0.248
102	102	0.668
103	103	0.136
104	104	0.309
105	105	0.998
106	106	0.902
107	107	0.425
108	108	0.339
109	109	0.162
11	11	0.494
110	110	0.131
111	111	0.408
112	112	0.544
113	113	0.153
114	114	0.838
115	115	0.937
116	116	0.626
117	117	0.0359
118	118	0.181
119	119	0.137
12	12	0.989
120	120	0.685
121	121	0.962
122	122	0.998
123	123	1.46031e-4
124	124	0.839
125	125	0.735
126	126	0.824
127	127	0.34
128	128	0.846
129	129	0.871
13	13	0.00263
130	130	0.954
131	131	0.599
132	132	0.817
133	133	5.29346e-4
134	134	0.49
135	135	0.0605
136	136	0.0466
137	137	0.0471
138	138	0.765
139	139	0.332
14	14	0.479
140	140	0.164
141	141	0.293
142	142	0.946
143	143	0.0584
144	144	0.557
145	145	0.85
146	146	0.547
147	147	0.524
148	148	0.645
149	149	0.908
15	15	0.67
150	150	0.881
151	151	0.599
152	152	0.294
153	153	0.748
154	154	0.493
155	155	0.407
156	156	0.362
157	157	0.239
158	158	0.651
159	159	0.875
16	16	0.267
160	160	0.788
161	161	0.506
162	162	0.222
163	163	0.465
164	164	0.44
165	165	0.521
166	166	0.429
167	167	0.299
168	168	0.147
169	169	0.393
17	17	0.346
18	18	0.921
19	19	0.57
2	2	0.203
20	20	0.14
21	21	0.138
22	22	0.829
23	23	0.603
24	24	0.794
25	25	0.492
26	26	0.0472
27	27	0.468
28	28	0.796
29	29	0.197
3	3	0.402
30	30	0.484
31	31	0.905
32	32	0.4
33	33	0.741
34	34	0.468
35	35	0.798
36	36	0.0751
37	37	0.628
38	38	0.625
39	39	0.417
4	4	0.707
40	40	0.0744
41	41	0.0954
42	42	0.391
43	43	0.675
44	44	0.692
45	45	0.882
46	46	0.493
47	47	0.212
48	48	0.291
49	49	0.101
5	5	0.947
50	50	0.83
51	51	0.794
52	52	0.843
53	53	0.0874
54	54	0.861
55	55	0.979
56	56	0.751
57	57	0.016
58	58	0.315
59	59	0.385
6	6	0.204
60	60	0.85
61	61	0.318
62	62	0.328
63	63	0.887
64	64	0.414
65	65	0.666
66	66	0.307
67	67	0.657
68	68	0.206
69	69	0.431
7	7	0.0789
70	70	0.571
71	71	0.372
72	72	0.981
73	73	0.611
74	74	0.428
75	75	0.211
76	76	0.0386
77	77	0.789
78	78	0.00216
79	79	0.252
8	8	0.86
80	80	0.109
81	81	0.897
82	82	0.924
83	83	0.998
84	84	0.315
85	85	0.991
86	86	0.493
87	87	0.28
88	88	0.721
89	89	0.0747
9	9	0.105
90	90	0.256
91	91	0.323
92	92	0.638
93	93	0.491
94	94	0.835
95	95	0.199
96	96	0.947
97	97	0.724
98	98	0.678
99	99	0.968

de novo motifs identified by HOMER in promoters active in this sampleSummary:The result of HOMER in this sample is shown. Analyst:NA library id: CNhs11832

FANTOM5 (FF) ontology

Direct parent terms

is_a relathionship
DOID:1798 pancreatic endocrine carcinoma
EFO:0002091 biological replicate
FF:0000210 human sample
FF:0103533 NOR-P1 cell sample

Ancestor terms (non development)Summary:Connected ontology terms with is_a, part_of or located_in relationship Analyst: Hideya Kawaji link to source data data

CL: Cell type
0000000 (cell), 0000000 (cell)
0000003 (native cell)
0000548 (animal cell)
0000066 (epithelial cell)
0002371 (somatic cell)
0000083 (epithelial cell of pancreas)
0000255 (eukaryotic cell)

DOID: Disease
4 (disease)
0050686 (organ system cancer)
162 (cancer)
14566 (disease of cellular proliferation)
1799 (islet cell tumor)
0050687 (cell type cancer)
305 (carcinoma)
170 (endocrine gland cancer)
10165 (endocrine pancreas cancer)
1793 (pancreatic cancer)
1798 (pancreatic endocrine carcinoma)

UBERON: Anatomy
0000468 (multi-cellular organism)
0001264 (pancreas)
0002100 (trunk)
0000466 (immaterial anatomical entity)
0002075 (viscus)
0000062 (organ)
0000475 (organism subdivision)
0000061 (anatomical structure)
0000465 (material anatomical entity)
0002553 (anatomical cavity)
0000467 (anatomical system)
0001062 (anatomical entity)
0000480 (anatomical group)
0002323 (body cavity)
0005177 (trunk region element)
0000464 (anatomical space)
0004458 (body cavity or lining)
0000949 (endocrine system)

FF: FANTOM5
0000102 (sample by type)
0000003 (cell line sample)
0000210 (human sample)
0000101 (sample by species)
0000001 (sample)
0100297 (carcinoma cell line sample)
0101120 (epithelial cell line sample)
0100794 (pancreatic cancer cell line sample)
0103533 (NOR-P1 cell sample)

Ancestor terms (development)Summary:Connected ontology terms with develops_from, derives_from or preceded_by relationship Analyst: Hideya Kawaji link to source data data
CL:0000223 (endodermal cell)

@@ Line 1: / Line 1: @@
 {{f5samples
 |DRA_sample_Accession=CAGE@SAMD00005790
-|accession_numbers=CAGE;DRX007980;DRR008852;DRZ000277;DRZ001662
+|accession_numbers=CAGE;DRX007980;DRR008852;DRZ000277;DRZ001662;DRZ011627;DRZ013012
 |ancestors_in_anatomy_facet=UBERON:0000468,UBERON:0001264,UBERON:0002100,UBERON:0000466,UBERON:0002075,UBERON:0000062,UBERON:0000475,UBERON:0000061,UBERON:0000465,UBERON:0002553,UBERON:0000467,UBERON:0001062,UBERON:0000480,UBERON:0002323,UBERON:0005177,UBERON:0000464,UBERON:0004458,UBERON:0000949
 |ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000548,CL:0000066,CL:0002371,CL:0000083,CL:0000255
@@ Line 9: / Line 9: @@
 |created_by=
 |creation_date=
-|data_phase=1
+|data_phase=2
-|datafreeze_phase=1
+|datafreeze_phase=2
 |def=
 |expression_enrichment_score=chr3:128212033..128212051,-!p1@GATA2!2.58!381.60!GATA2;;chr12:19556998..19557013,+!p6@AEBP2!2.22!164.74!AEBP2;;chr5:2751762..2751784,-!p1@IRX2!2.20!157.14!IRX2;;chr17:48072574..48072597,-!p1@DLX3!2.10!125.45!DLX3;;chr9:127358120..127358170,-!p3@NR6A1!2.10!125.45!NR6A1;;chr20:55204351..55204377,+!p1@TFAP2C!2.08!150.07!TFAP2C;;chr19:57352087..57352102,-!p1@PEG3,p1@ZIM2!2.06!113.14!PEG3;;chr10:8096772..8096787,+!p2@GATA3!1.96!106.86!GATA3;;chr2:16080659..16080685,+!p1@MYCN!1.91!79.88!MYCN;;chr8:135708787..135708805,-!p2@ZFAT!1.88!75.43!ZFAT;;chr5:2751785..2751808,-!p2@IRX2!1.88!74.38!IRX2;;chrX:70319128..70319142,+!p3@FOXO4!1.87!73.33!FOXO4;;chr19:33793430..33793447,-!p1@CEBPA!1.82!260.60!CEBPA;;chr10:8096631..8096660,+!p1@GATA3!1.82!78.83!GATA3;;chr7:96654133..96654150,-!p1@DLX5!1.82!65.74!DLX5;;chr2:122042770..122042785,-!p1@TFCP2L1!1.81!62.86!TFCP2L1;;chr12:19556960..19556982,+!p10@AEBP2!1.81!62.86!AEBP2;;chr21:45681774..45681821,-!p1@DNMT3L!1.72!51.33!DNMT3L;;chr17:45928521..45928539,-!p1@SP6!1.70!49.50!SP6;;chr17:80797886..80797906,-!p1@ZNF750!1.61!39.29!ZNF750;;chr3:12330560..12330579,+!p1@PPARG!1.60!44.26!PPARG;;chr1:201979743..201979762,+!p1@ELF3!1.60!38.50!ELF3;;chr1:935398..935465,-!p2@HES4!1.57!73.33!HES4;;chr5:174151612..174151633,+!p2@MSX2!1.57!35.88!MSX2;;chr2:10091815..10091864,+!p1@GRHL1!1.51!41.38!GRHL1;;chr15:96869511..96869525,+!p16@NR2F2!1.49!32.74!NR2F2;;chr3:128206762..128206781,-!p2@GATA2!1.48!174.95!GATA2;;chr20:31350184..31350200,+!p1@DNMT3B!1.48!59.98!DNMT3B;;chr5:174151553..174151610,+!p1@MSX2!1.46!45.57!MSX2;;chr12:54785074..54785122,-!p2@ZNF385A!1.44!40.07!ZNF385A;;chr1:209979467..209979494,-!p1@IRF6!1.43!28.81!IRF6;;chr21:45681737..45681760,-!p2@DNMT3L!1.43!26.19!DNMT3L;;chr2:88752207..88752218,-!p1@FOXI3!1.36!22.00!FOXI3;;chr6:53013620..53013644,-!p1@GCM1!1.35!21.48!GCM1;;chr12:80084737..80084763,-!p3@PAWR!1.34!76.74!PAWR;;chr3:189507432..189507459,+!p1@TP63!1.33!20.43!TP63;;chr8:102504651..102504683,+!p1@GRHL2!1.31!19.64!GRHL2;;chr4:188916918..188916942,+!p1@ZFP42!1.30!18.86!ZFP42;;chr7:26191809..26191890,+!p1@NFE2L3!1.29!89.05!NFE2L3;;chr12:3068634..3068656,+!p5@TEAD4!1.29!18.60!TEAD4;;chr19:926001..926046,+!p1@ARID3A!1.28!61.81!ARID3A;;chr2:46524897..46524911,+!p2@EPAS1!1.26!47.14!EPAS1;;chr19:929027..929051,+!p4@ARID3A!1.26!17.02!ARID3A;;chr12:85673977..85674015,+!p1@ALX1!1.26!17.02!ALX1;;chr1:41827095..41827155,+!p1@FOXO6!1.25!22.52!FOXO6;;chr19:926055..926068,+!p2@ARID3A!1.24!35.36!ARID3A;;chr12:19592405..19592492,+!p2@AEBP2!1.23!135.41!AEBP2;;chr11:65554528..65554546,+!p1@OVOL1!1.23!15.98!OVOL1;;chr20:32274179..32274213,-!p1@E2F1!1.22!101.62!E2F1;;chr12:80084333..80084380,-!p4@PAWR!1.21!72.81!PAWR;;chr10:70320074..70320106,+!p1@TET1!1.21!30.64!TET1;;chr10:8095593..8095625,+!p3@GATA3!1.21!17.81!GATA3;;chr19:54024313..54024361,+!p7@ZNF331!1.18!14.14!ZNF331;;chr3:128207349..128207386,-!p3@GATA2!1.17!13.88!GATA2;;chr12:80084768..80084821,-!p2@PAWR!1.14!87.74!PAWR;;chr12:54785054..54785072,-!p4@ZNF385A!1.14!14.40!ZNF385A;;chr3:141719209..141719215,-!p10@TFDP2!1.14!12.83!TFDP2;;chr1:6479968..6479986,-!p1@HES2!1.14!12.83!HES2;;chr12:19556947..19556956,+!p14@AEBP2!1.13!12.57!AEBP2;;chr2:16081912..16081931,+!p2@MYCN!1.11!11.79!MYCN;;chr6:28048343..28048354,+!p1@ZNF165!1.11!11.79!ZNF165;;chr18:19749541..19749557,+!p1@GATA6!1.10!36.41!GATA6;;chr12:80084862..80084884,-!p7@PAWR!1.10!24.36!PAWR;;chr12:80084303..80084332,-!p1@PAWR!1.09!67.57!PAWR;;chr1:24645832..24645853,+!p1@GRHL3!1.08!11.00!GRHL3;;chr12:3068544..3068597,+!p1@TEAD4!1.07!64.69!TEAD4;;chr6:10419768..10419819,-!p6@TFAP2A!1.07!10.74!TFAP2A;;chr17:7493405..7493419,-!p1@SOX15!1.07!10.74!SOX15;;chr6:34204672..34204692,+!p1@HMGA1!1.06!1188.27!HMGA1;;chr3:141747441..141747452,-!p4@TFDP2!1.06!14.67!TFDP2;;chr5:1887070..1887114,-!p1@IRX4!1.06!10.48!IRX4;;chr3:141747459..141747475,-!p1@TFDP2!1.05!86.69!TFDP2;;chr7:96634878..96634900,+!p2@DLX6!1.05!10.21!DLX6;;chr14:73360799..73360817,-!p1@DPF3!1.04!35.36!DPF3;;chr1:23857698..23857733,-!p1@E2F2!1.04!18.60!E2F2;;chr20:32274150..32274166,-!p2@E2F1!1.04!18.60!E2F1;;chr11:65554563..65554576,+!p2@OVOL1!1.04!9.95!OVOL1;;chr6:10419884..10419898,-!p11@TFAP2A!1.04!9.95!TFAP2A;;chr12:69753448..69753577,+!p1@YEATS4!1.03!194.07!YEATS4;;chr17:48046543..48046575,+!p2@DLX4!1.03!9.69!DLX4;;chr2:74229812..74229867,+!p1@TET3!1.02!24.36!TET3;;chr12:3068668..3068689,+!p7@TEAD4!1.02!9.43!TEAD4;;chr1:201979703..201979721,+!p2@ELF3!1.02!9.43!ELF3;;chr20:50418972..50419029,-!p1@SALL4!1.02!9.43!SALL4;;chr19:53360870..53360873,-!p1@ZNF468!1.01!35.10!ZNF468;;chr12:80084167..80084197,-!p5@PAWR!1.01!22.26!PAWR;;chr19:48773337..48773339,+!p2@ZNF114!1.01!9.17!ZNF114;;chrX:70316101..70316112,+!p5@FOXO4!1.01!9.17!FOXO4;;chr12:80083722..80083766,-!p12@PAWR!1.00!12.31!PAWR;;chr19:50431973..50431998,+!p5@ATF5!1.00!11.52!ATF5;;chr1:6684918..6684936,+!p2@THAP3!1.00!11.00!THAP3;;chr13:73633131..73633149,+!p1@KLF5!0.99!96.12!KLF5;;chrX:70316005..70316034,+!p2@FOXO4!0.98!15.71!FOXO4;;chr2:10091922..10091935,+!p3@GRHL1!0.98!8.64!GRHL1;;chr19:54024369..54024390,+!p22@ZNF331!0.98!8.64!ZNF331;;chr19:45908292..45908374,-!p1@PPP1R13L!0.97!75.43!PPP1R13L;;chr6:41703952..41703994,-!p4@TFEB!0.97!8.38!TFEB;;chr7:96635178..96635181,+!p1@DLX6!0.95!7.86!DLX6;;chr18:19749386..19749404,+!p2@GATA6!0.93!11.00!GATA6;;chr20:18038521..18038571,-!p1@OVOL2!0.93!7.60!OVOL2;;chr7:96634908..96634923,+!p4@DLX6!0.93!7.60!DLX6;;chr9:137217986..137218049,+!p3@RXRA!0.92!21.74!RXRA;;chr6:10419824..10419840,-!p9@TFAP2A!0.92!7.33!TFAP2A;;chr18:19749353..19749367,+!p4@GATA6!0.92!7.33!GATA6;;chrX:56258844..56258882,+!p1@KLF8!0.91!9.95!KLF8;;chrY:21906594..21906622,-!p1@KDM5D!0.91!7.07!KDM5D;;chr6:35464817..35464894,-!p1@TEAD3!0.90!112.10!TEAD3;;chr3:24536253..24536328,-!p1@THRB!0.90!13.36!THRB;;chr19:22817119..22817145,+!p1@ZNF492!0.90!11.79!ZNF492;;chr3:32023232..32023273,+!p1@ZNF860!0.89!9.95!ZNF860;;chr17:48045917..48045977,+!p1@DLX4!0.89!6.81!DLX4;;chr14:73303182..73303194,-!p2@DPF3!0.89!6.81!DPF3;;chrX:70316072..70316085,+!p4@FOXO4!0.89!6.81!FOXO4;;chr15:74833584..74833626,+!p1@ARID3B!0.88!15.98!ARID3B;;chr16:29818199..29818216,+!p11@MAZ!0.88!11.00!MAZ;;chr19:19976683..19976709,+!p1@ZNF253!0.86!29.07!ZNF253;;chr3:12329397..12329433,+!p2@PPARG!0.86!14.67!PPARG;;chr13:36871902..36872023,-!p1@CCDC169-SOHLH2,p1@CCDC169,p1@SOHLH2!0.86!14.14!SOHLH2;;chr19:54024251..54024305,+!p4@ZNF331!0.86!10.48!ZNF331;;chr2:25475120..25475176,-!p2@DNMT3A!0.86!8.64!DNMT3A;;chr12:54332608..54332636,+!p1@HOXC13!0.86!6.29!HOXC13;;chr10:114710098..114710130,+!p2@TCF7L2!0.84!47.67!TCF7L2;;chr12:19671171..19671175,+!p4@AEBP2!0.83!13.88!AEBP2;;chr7:148844205..148844236,+!p5@ZNF398!0.83!7.07!ZNF398;;chr7:96634850..96634874,+!p3@DLX6!0.83!5.76!DLX6;;chr10:8097321..8097348,+!p4@GATA3!0.83!5.76!GATA3;;chr9:137218341..137218361,+!p2@RXRA!0.82!24.88!RXRA;;chr6:20402102..20402152,+!p1@E2F3!0.82!24.88!E2F3;;chr12:51566562..51566584,-!p2@TFCP2!0.82!16.76!TFCP2;;chr1:40367530..40367597,-!p1@MYCL1!0.82!10.48!MYCL1;;chr13:41635512..41635539,-!p2@ELF1!0.81!32.74!ELF1;;chr20:42295745..42295765,+!p1@MYBL2!0.80!93.76!MYBL2;;chr5:134369905..134369972,-!p1@PITX1!0.80!8.38!PITX1;;chr17:45928443..45928473,-!p2@SP6!0.80!5.24!SP6;;chr17:48049323..48049330,+!p6@DLX4!0.80!5.24!DLX4;;chr15:41913690..41913753,+!p2@MGA!0.79!13.36!MGA;;chr19:21265028..21265052,+!p2@ZNF714!0.79!9.69!ZNF714;;chr19:53289995..53290050,-!p1@ZNF600!0.78!22.52!ZNF600;;chr1:40367668..40367684,-!p2@MYCL1!0.78!4.98!MYCL1;;chr1:42801540..42801562,-!p4@FOXJ3!0.78!4.98!FOXJ3;;chr7:96654026..96654061,-!p2@DLX5!0.78!4.98!DLX5;;chrX:131547625..131547644,-!p4@MBNL3!0.78!4.98!MBNL3;;chr22:22874610..22874616,-!p1@ZNF280A!0.78!4.98!ZNF280A;;chrX:129244840..129244881,-!p2@ELF4!0.77!20.43!ELF4;;chr17:41277372..41277418,-!p1@BRCA1!0.77!19.38!BRCA1;;chr9:137218281..137218340,+!p1@RXRA!0.76!149.02!RXRA;;chr12:3069037..3069119,+!p2@TEAD4!0.76!17.81!TEAD4;;chr8:145669791..145669834,-!p1@TONSL!0.76!14.67!TONSL;;chr5:1887052..1887065,-!p2@IRX4!0.76!4.71!IRX4;;chr2:16082155..16082169,+!p3@MYCN!0.76!4.71!MYCN;;chr3:12329358..12329393,+!p3@PPARG!0.75!12.31!PPARG;;chr11:63684602..63684664,-!p1@RCOR2!0.75!9.69!RCOR2;;chr12:80083544..80083558,-!p13@PAWR!0.75!6.02!PAWR;;chr3:141868293..141868355,-!p2@TFDP2!0.74!43.74!TFDP2;;chr18:19749517..19749531,+!p3@GATA6!0.73!8.38!GATA6;;chr6:85473156..85473210,-!p2@TBX18!0.73!5.50!TBX18;;chrY:2803415..2803468,+!p1@ZFY!0.72!4.19!ZFY;;chr18:19749504..19749515,+!p5@GATA6!0.72!4.19!GATA6;;chr10:8097295..8097320,+!p6@GATA3!0.72!4.19!GATA3;;chr1:204042233..204042249,+!p1@SOX13!0.71!29.07!SOX13;;chr16:29818160..29818188,+!p6@MAZ!0.71!21.48!MAZ;;chr5:138647473..138647476,+!p6@MATR3!0.71!11.26!MATR3;;chr1:153939955..153940009,+!p2@CREB3L4!0.71!10.48!CREB3L4;;chr19:19976714..19976729,+!p3@ZNF253!0.71!8.38!ZNF253;;chrX:56258811..56258838,+!p2@KLF8!0.71!5.76!KLF8;;chr3:126076242..126076257,-!p1@KLF15!0.71!5.24!KLF15;;chr8:81398444..81398472,+!p1@ZBTB10!0.70!18.07!ZBTB10;;chr19:33865009..33865090,+!p3@CEBPG!0.70!5.50!CEBPG;;chr10:97889464..97889494,+!p3@ZNF518A!0.69!7.86!ZNF518A;;chr11:130184672..130184696,-!p3@ZBTB44!0.69!7.86!ZBTB44;;chr2:46524878..46524891,+!p3@EPAS1!0.69!7.33!EPAS1;;chr14:103059006..103059017,+!p2@RCOR1!0.69!6.55!RCOR1;;chr11:12696102..12696113,+!p5@TEAD1!0.69!3.93!TEAD1;;chr12:54778471..54778528,-!p1@ZNF385A!0.69!3.93!ZNF385A;;chr19:50832895..50832928,+!p3@NR1H2!0.69!3.93!NR1H2;;chr1:24645921..24645973,+!p2@GRHL3!0.69!3.93!GRHL3;;chr5:134369879..134369898,-!p2@PITX1!0.69!3.93!PITX1;;chr8:102504979..102505010,+!p2@GRHL2!0.69!3.93!GRHL2;;chr12:19592602..19592648,+!p1@AEBP2!0.68!49.76!AEBP2;;chr2:238600933..238600985,+!p3@LRRFIP1!0.68!23.31!LRRFIP1;;chr9:2015335..2015370,+!p1@SMARCA2!0.67!52.12!SMARCA2;;chr6:21597765..21597779,+!p2@SOX4!0.67!34.57!SOX4;;chrX:129244655..129244697,-!p4@ELF4!0.67!7.07!ELF4;;chr16:73082004..73082033,-!p5@ZFHX3!0.67!6.29!ZFHX3;;chr11:6947720..6947812,+!p1@ZNF215!0.67!4.98!ZNF215;;chr12:85674018..85674039,+!p3@ALX1!0.67!3.67!ALX1;;chr5:174151648..174151659,+!p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@@ Line 41: / Line 41: @@
 |fonse_treatment_closure=
 |has_quality=
+|hg19bam=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.cell_line.hCAGE/pancreatic%2520carcinoma%2520cell%2520line%253aNOR-P1.CNhs11832.10698-109G5.hg19.nobarcode.bam
+|hg19ctss=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.cell_line.hCAGE/pancreatic%2520carcinoma%2520cell%2520line%253aNOR-P1.CNhs11832.10698-109G5.hg19.ctss.bed.gz
+|hg19fasta=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.cell_line.hCAGE/pancreatic%2520carcinoma%2520cell%2520line%253aNOR-P1.CNhs11832.10698-109G5.hg19.nobarcode.rdna.fa.gz
+|hg38bam=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.cell_line.hCAGE/pancreatic%2520carcinoma%2520cell%2520line%253aNOR-P1.CNhs11832.10698-109G5.hg38.nobarcode.bam
+|hg38ctss=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.cell_line.hCAGE/pancreatic%2520carcinoma%2520cell%2520line%253aNOR-P1.CNhs11832.10698-109G5.hg38.nobarcode.ctss.bed.gz
 |id=FF:10698-109G5
 |is_a=DOID:1798;;EFO:0002091;;FF:0000210;;FF:0103533
 |is_obsolete=
 |library_id=CNhs11832
-|library_id_phase_based=1:CNhs11832
+|library_id_phase_based=2:CNhs11832
+|microRNAs=
+|microRNAs_nn=
+|microRNAs_nonnovel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer/#/human#cage;sample;10698
+|microRNAs_novel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer_novel/#/human#cage;sample;10698
 |name=pancreatic carcinoma cell line:NOR-P1
 |namespace=FANTOM5
@@ Line 51: / Line 60: @@
 |profile_cagescan=,,,
 |profile_hcage=CNhs11832,LSID829,release010,COMPLETED
-|profile_rnaseq=,,,
+|profile_rnaseq=
 |profile_srnaseq=,,,
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@@ Line 90: / Line 100: @@
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+|zenbu_report=https://fantom.gsc.riken.jp/zenbu/reports/#miRNA_expression_atlas_human;search_select_hide=table111:FF:10698-109G5;search_select_hide=table117:FF:10698-109G5
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FF:10698-109G5: Difference between revisions

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Latest revision as of 14:33, 3 June 2020

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	Mozilla Cavendish skin modified by DaSch for the Web Community Wiki GitHub project page – Report a bug – Skin version: 2.6.0