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{{f5samples
{{f5samples
|DRA_sample_Accession=CAGE@SAMD00004718
|DRA_sample_Accession=CAGE@SAMD00004718
|accession_numbers=CAGE;DRX008008;DRR008880;DRZ000305;DRZ001690
|DRA_sample_Accession_RNASeq=RNA-Seq@SAMD00004718
|accession_numbers=CAGE;DRX008008;DRR008880;DRZ000305;DRZ001690;DRZ011655;DRZ013040
|accession_numbers_RNASeq=RNA-Seq;DRX057148;DRR062907;DRZ007983
|ancestors_in_anatomy_facet=UBERON:0000468,UBERON:0002048,UBERON:0002100,UBERON:0000483,UBERON:0000479,UBERON:0000064,UBERON:0004119,UBERON:0000466,UBERON:0000062,UBERON:0004111,UBERON:0000475,UBERON:0000061,UBERON:0000465,UBERON:0000063,UBERON:0004802,UBERON:0000025,UBERON:0005911,UBERON:0000477,UBERON:0000467,UBERON:0001062,UBERON:0000480,UBERON:0000119,UBERON:0009569,UBERON:0005178,UBERON:0000072,UBERON:0005177,UBERON:0004807,UBERON:0000117,UBERON:0000171,UBERON:0000115,UBERON:0000464,UBERON:0005181,UBERON:0010317,UBERON:0000065,UBERON:0000170,UBERON:0001004,UBERON:0002224,UBERON:0000915
|ancestors_in_anatomy_facet=UBERON:0000468,UBERON:0002048,UBERON:0002100,UBERON:0000483,UBERON:0000479,UBERON:0000064,UBERON:0004119,UBERON:0000466,UBERON:0000062,UBERON:0004111,UBERON:0000475,UBERON:0000061,UBERON:0000465,UBERON:0000063,UBERON:0004802,UBERON:0000025,UBERON:0005911,UBERON:0000477,UBERON:0000467,UBERON:0001062,UBERON:0000480,UBERON:0000119,UBERON:0009569,UBERON:0005178,UBERON:0000072,UBERON:0005177,UBERON:0004807,UBERON:0000117,UBERON:0000171,UBERON:0000115,UBERON:0000464,UBERON:0005181,UBERON:0010317,UBERON:0000065,UBERON:0000170,UBERON:0001004,UBERON:0002224,UBERON:0000915
|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000548,CL:0000066,CL:0000082,CL:0000255
|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000548,CL:0000066,CL:0000082,CL:0000255
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|created_by=
|created_by=
|creation_date=
|creation_date=
|data_phase=1
|data_phase=2
|datafreeze_phase=1
|datafreeze_phase=2
|def=
|def=
|expression_enrichment_score=chr14:57277178..57277203,-!p1@OTX2!2.92!833.68!OTX2;;chr2:182545234..182545252,-!p1@NEUROD1!2.68!480.22!NEUROD1;;chr19:48325184..48325211,+!p1@CRX!2.62!411.95!CRX;;chr5:134871645..134871660,-!p1@NEUROG1!2.15!138.74!NEUROG1;;chr13:72441315..72441454,-!p1@DACH1!1.96!174.15!DACH1;;chr2:45168875..45168916,+!p1@SIX3!1.95!87.95!SIX3;;chrX:85403445..85403479,+!p2@DACH2!1.86!70.91!DACH2;;chr15:76629123..76629151,+!p1@ISL2!1.81!70.14!ISL2;;chr2:239148671..239148686,-!p1@HES6!1.79!213.06!HES6;;chr3:24206971..24206999,-!p8@THRB!1.75!55.63!THRB;;chr14:29235961..29236008,+!p1@FOXG1!1.75!55.52!FOXG1;;chr19:47523058..47523114,+!p1@NPAS1!1.75!54.86!NPAS1;;chr4:41750057..41750078,-!p3@PHOX2B!1.74!53.54!PHOX2B;;chr2:5832508..5832524,+!p1@SOX11!1.72!51.89!SOX11;;chr1:165414325..165414369,-!p1@RXRG!1.72!51.12!RXRG;;chr15:57511609..57511651,+!p2@TCF12!1.69!79.16!TCF12;;chr14:57272369..57272391,-!p2@OTX2!1.69!47.82!OTX2;;chr10:69991865..69991870,-!p1@ATOH7!1.67!46.28!ATOH7;;chr2:45168834..45168847,+!p2@SIX3!1.64!42.44!SIX3;;chr14:29237009..29237049,+!p4@FOXG1!1.58!36.94!FOXG1;;chr4:41750731..41750748,-!p1@PHOX2B!1.56!35.40!PHOX2B;;chr11:63684602..63684664,-!p1@RCOR2!1.53!63.77!RCOR2;;chr9:14314131..14314147,-!p2@NFIB!1.50!162.71!NFIB;;chr20:20348740..20348757,+!p1@INSM1!1.48!29.13!INSM1;;chr11:125034640..125034655,+!p1@PKNOX2!1.43!25.95!PKNOX2;;chr13:72441074..72441172,-!p2@DACH1!1.42!25.29!DACH1;;chr12:54447599..54447630,+!p3@HOXC4!1.40!29.68!HOXC4;;chr1:216896752..216896778,-!p1@ESRRG!1.39!23.42!ESRRG;;chr4:81118647..81118666,+!p1@PRDM8!1.38!30.01!PRDM8;;chr14:57277098..57277116,-!p3@OTX2!1.38!23.20!OTX2;;chr7:35293685..35293718,-!p1@TBX20!1.38!22.98!TBX20;;chr1:160336851..160336868,+!p1@NHLH1!1.36!21.66!NHLH1;;chr20:62795951..62795965,+!p3@MYT1!1.34!21.11!MYT1;;chr1:180199393..180199426,+!p1@LHX4!1.33!20.56!LHX4;;chr1:10856694..10856715,-!p3@CASZ1!1.33!20.23!CASZ1;;chr4:41750922..41750939,-!p4@PHOX2B!1.32!19.68!PHOX2B;;chr14:29236269..29236285,+!p3@FOXG1!1.31!19.57!FOXG1;;chr15:37392724..37392757,-!p1@MEIS2!1.29!83.01!MEIS2;;chr1:10856665..10856683,-!p4@CASZ1!1.28!18.25!CASZ1;;chr2:74741569..74741620,+!p1@TLX2!1.27!17.81!TLX2;;chr7:73038839..73038862,-!p1@MLXIPL!1.26!17.26!MLXIPL;;chr8:10588010..10588030,-!p1@SOX7!1.26!17.15!SOX7;;chr13:72441506..72441562,-!p3@DACH1!1.25!16.60!DACH1;;chr3:52001448..52001478,-!p2@PCBP4!1.23!217.13!PCBP4;;chr13:37494365..37494381,-!p1@SMAD9!1.23!27.81!SMAD9;;chr2:45168856..45168867,+!p7@SIX3!1.21!15.39!SIX3;;chr3:24207039..24207050,-!p16@THRB!1.21!15.06!THRB;;chr18:55102598..55102623,+!p1@ONECUT2!1.19!14.51!ONECUT2;;chr5:134369905..134369972,-!p1@PITX1!1.18!21.88!PITX1;;chrX:84499081..84499115,+!p2@ZNF711!1.18!21.00!ZNF711;;chr15:76629097..76629120,+!p2@ISL2!1.17!15.28!ISL2;;chr2:182545282..182545294,-!p2@NEUROD1!1.17!13.74!NEUROD1;;chr8:53162037..53162058,-!p5@ST18!1.17!13.63!ST18;;chr12:54779511..54779577,-!p5@ZNF385A!1.17!13.63!ZNF385A;;chr1:40105299..40105326,-!p1@HEYL!1.15!12.97!HEYL;;chr12:54785074..54785122,-!p2@ZNF385A!1.13!19.13!ZNF385A;;chr8:128747757..128747800,+!p7@MYC!1.13!16.82!MYC;;chr4:41750047..41750056,-!p7@PHOX2B!1.13!12.42!PHOX2B;;chr4:41750839..41750850,-!p2@PHOX2B!1.12!12.20!PHOX2B;;chr2:45169193..45169219,+!p3@SIX3!1.12!12.09!SIX3;;chr1:41827095..41827155,+!p1@FOXO6!1.11!16.05!FOXO6;;chr2:45169143..45169167,+!p5@SIX3!1.11!11.76!SIX3;;chr12:55413751..55413765,+!p1@NEUROD4!1.11!11.76!NEUROD4;;chr2:182545296..182545307,-!p3@NEUROD1!1.09!11.43!NEUROD1;;chr19:46800289..46800327,+!p2@HIF3A!1.07!10.77!HIF3A;;chr2:5832493..5832507,+!p2@SOX11!1.07!10.66!SOX11;;chr1:216896780..216896800,-!p2@ESRRG!1.06!10.44!ESRRG;;chr9:14314106..14314119,-!p5@NFIB!1.05!18.58!NFIB;;chr1:165414227..165414242,-!p2@RXRG!1.05!10.11!RXRG;;chr8:128748308..128748324,+!p2@MYC!1.04!276.61!MYC;;chr1:247171347..247171366,-!p2@ZNF695!1.04!18.36!ZNF695;;chr8:128748470..128748487,+!p1@MYC!1.03!1076.10!MYC;;chr18:56532100..56532130,+!p1@ZNF532!1.03!18.25!ZNF532;;chr3:24207220..24207235,-!p18@THRB!1.03!9.67!THRB;;chr8:28748099..28748141,+!p2@HMBOX1!1.01!29.35!HMBOX1;;chr18:55102628..55102646,+!p2@ONECUT2!1.01!9.13!ONECUT2;;chr14:21562671..21562702,-!p8@ZNF219!1.01!9.13!ZNF219;;chr2:60780753..60780800,-!p1@BCL11A!1.00!44.86!BCL11A;;chr2:166326200..166326216,+!p1@CSRNP3!1.00!13.30!CSRNP3;;chr17:8027418..8027432,-!p1@HES7!1.00!8.91!HES7;;chr8:128747661..128747703,+!p6@MYC!0.99!11.87!MYC;;chr12:85673977..85674015,+!p1@ALX1!0.99!8.80!ALX1;;chr2:16080659..16080685,+!p1@MYCN!0.99!8.80!MYCN;;chr8:10588174..10588200,-!p3@SOX7!0.99!8.69!SOX7;;chr14:29234581..29234601,+!p2@FOXG1!0.99!8.69!FOXG1;;chr7:148581327..148581347,-!p2@EZH2!0.98!29.68!EZH2;;chr2:25475120..25475176,-!p2@DNMT3A!0.98!11.65!DNMT3A;;chr12:54393880..54393962,+!p1@HOXC9!0.98!8.58!HOXC9;;chr15:57511589..57511608,+!p4@TCF12!0.98!8.47!TCF12;;chr2:45168959..45168990,+!p6@SIX3!0.98!8.47!SIX3;;chr21:34144157..34144175,-!p3@GCFC1!0.97!13.63!GCFC1;;chr1:10856639..10856662,-!p2@CASZ1!0.97!8.36!CASZ1;;chr4:41750020..41750029,-!p9@PHOX2B!0.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|expression_enrichment_score=chr14:57277178..57277203,-!p1@OTX2!2.92!833.68!OTX2;;chr2:182545234..182545252,-!p1@NEUROD1!2.68!480.22!NEUROD1;;chr19:48325184..48325211,+!p1@CRX!2.62!411.95!CRX;;chr5:134871645..134871660,-!p1@NEUROG1!2.15!138.74!NEUROG1;;chr13:72441315..72441454,-!p1@DACH1!1.96!174.15!DACH1;;chr2:45168875..45168916,+!p1@SIX3!1.95!87.95!SIX3;;chrX:85403445..85403479,+!p2@DACH2!1.86!70.91!DACH2;;chr15:76629123..76629151,+!p1@ISL2!1.81!70.14!ISL2;;chr2:239148671..239148686,-!p1@HES6!1.79!213.06!HES6;;chr3:24206971..24206999,-!p8@THRB!1.75!55.63!THRB;;chr14:29235961..29236008,+!p1@FOXG1!1.75!55.52!FOXG1;;chr19:47523058..47523114,+!p1@NPAS1!1.75!54.86!NPAS1;;chr4:41750057..41750078,-!p3@PHOX2B!1.74!53.54!PHOX2B;;chr2:5832508..5832524,+!p1@SOX11!1.72!51.89!SOX11;;chr1:165414325..165414369,-!p1@RXRG!1.72!51.12!RXRG;;chr15:57511609..57511651,+!p2@TCF12!1.69!79.16!TCF12;;chr14:57272369..57272391,-!p2@OTX2!1.69!47.82!OTX2;;chr10:69991865..69991870,-!p1@ATOH7!1.67!46.28!ATOH7;;chr2:45168834..45168847,+!p2@SIX3!1.64!42.44!SIX3;;chr14:29237009..29237049,+!p4@FOXG1!1.58!36.94!FOXG1;;chr4:41750731..41750748,-!p1@PHOX2B!1.56!35.40!PHOX2B;;chr11:63684602..63684664,-!p1@RCOR2!1.53!63.77!RCOR2;;chr9:14314131..14314147,-!p2@NFIB!1.50!162.71!NFIB;;chr20:20348740..20348757,+!p1@INSM1!1.48!29.13!INSM1;;chr11:125034640..125034655,+!p1@PKNOX2!1.43!25.95!PKNOX2;;chr13:72441074..72441172,-!p2@DACH1!1.42!25.29!DACH1;;chr12:54447599..54447630,+!p3@HOXC4!1.40!29.68!HOXC4;;chr1:216896752..216896778,-!p1@ESRRG!1.39!23.42!ESRRG;;chr4:81118647..81118666,+!p1@PRDM8!1.38!30.01!PRDM8;;chr14:57277098..57277116,-!p3@OTX2!1.38!23.20!OTX2;;chr7:35293685..35293718,-!p1@TBX20!1.38!22.98!TBX20;;chr1:160336851..160336868,+!p1@NHLH1!1.36!21.66!NHLH1;;chr20:62795951..62795965,+!p3@MYT1!1.34!21.11!MYT1;;chr1:180199393..180199426,+!p1@LHX4!1.33!20.56!LHX4;;chr1:10856694..10856715,-!p3@CASZ1!1.33!20.23!CASZ1;;chr4:41750922..41750939,-!p4@PHOX2B!1.32!19.68!PHOX2B;;chr14:29236269..29236285,+!p3@FOXG1!1.31!19.57!FOXG1;;chr15:37392724..37392757,-!p1@MEIS2!1.29!83.01!MEIS2;;chr1:10856665..10856683,-!p4@CASZ1!1.28!18.25!CASZ1;;chr2:74741569..74741620,+!p1@TLX2!1.27!17.81!TLX2;;chr7:73038839..73038862,-!p1@MLXIPL!1.26!17.26!MLXIPL;;chr8:10588010..10588030,-!p1@SOX7!1.26!17.15!SOX7;;chr13:72441506..72441562,-!p3@DACH1!1.25!16.60!DACH1;;chr3:52001448..52001478,-!p2@PCBP4!1.23!217.13!PCBP4;;chr13:37494365..37494381,-!p1@SMAD9!1.23!27.81!SMAD9;;chr2:45168856..45168867,+!p7@SIX3!1.21!15.39!SIX3;;chr3:24207039..24207050,-!p16@THRB!1.21!15.06!THRB;;chr18:55102598..55102623,+!p1@ONECUT2!1.19!14.51!ONECUT2;;chr5:134369905..134369972,-!p1@PITX1!1.18!21.88!PITX1;;chrX:84499081..84499115,+!p2@ZNF711!1.18!21.00!ZNF711;;chr15:76629097..76629120,+!p2@ISL2!1.17!15.28!ISL2;;chr2:182545282..182545294,-!p2@NEUROD1!1.17!13.74!NEUROD1;;chr8:53162037..53162058,-!p5@ST18!1.17!13.63!ST18;;chr12:54779511..54779577,-!p5@ZNF385A!1.17!13.63!ZNF385A;;chr1:40105299..40105326,-!p1@HEYL!1.15!12.97!HEYL;;chr12:54785074..54785122,-!p2@ZNF385A!1.13!19.13!ZNF385A;;chr8:128747757..128747800,+!p7@MYC!1.13!16.82!MYC;;chr4:41750047..41750056,-!p7@PHOX2B!1.13!12.42!PHOX2B;;chr4:41750839..41750850,-!p2@PHOX2B!1.12!12.20!PHOX2B;;chr2:45169193..45169219,+!p3@SIX3!1.12!12.09!SIX3;;chr1:41827095..41827155,+!p1@FOXO6!1.11!16.05!FOXO6;;chr2:45169143..45169167,+!p5@SIX3!1.11!11.76!SIX3;;chr12:55413751..55413765,+!p1@NEUROD4!1.11!11.76!NEUROD4;;chr2:182545296..182545307,-!p3@NEUROD1!1.09!11.43!NEUROD1;;chr19:46800289..46800327,+!p2@HIF3A!1.07!10.77!HIF3A;;chr2:5832493..5832507,+!p2@SOX11!1.07!10.66!SOX11;;chr1:216896780..216896800,-!p2@ESRRG!1.06!10.44!ESRRG;;chr9:14314106..14314119,-!p5@NFIB!1.05!18.58!NFIB;;chr1:165414227..165414242,-!p2@RXRG!1.05!10.11!RXRG;;chr8:128748308..128748324,+!p2@MYC!1.04!276.61!MYC;;chr1:247171347..247171366,-!p2@ZNF695!1.04!18.36!ZNF695;;chr8:128748470..128748487,+!p1@MYC!1.03!1076.10!MYC;;chr18:56532100..56532130,+!p1@ZNF532!1.03!18.25!ZNF532;;chr3:24207220..24207235,-!p18@THRB!1.03!9.67!THRB;;chr8:28748099..28748141,+!p2@HMBOX1!1.01!29.35!HMBOX1;;chr18:55102628..55102646,+!p2@ONECUT2!1.01!9.13!ONECUT2;;chr14:21562671..21562702,-!p8@ZNF219!1.01!9.13!ZNF219;;chr2:60780753..60780800,-!p1@BCL11A!1.00!44.86!BCL11A;;chr2:166326200..166326216,+!p1@CSRNP3!1.00!13.30!CSRNP3;;chr17:8027418..8027432,-!p1@HES7!1.00!8.91!HES7;;chr8:128747661..128747703,+!p6@MYC!0.99!11.87!MYC;;chr12:85673977..85674015,+!p1@ALX1!0.99!8.80!ALX1;;chr2:16080659..16080685,+!p1@MYCN!0.99!8.80!MYCN;;chr8:10588174..10588200,-!p3@SOX7!0.99!8.69!SOX7;;chr14:29234581..29234601,+!p2@FOXG1!0.99!8.69!FOXG1;;chr7:148581327..148581347,-!p2@EZH2!0.98!29.68!EZH2;;chr2:25475120..25475176,-!p2@DNMT3A!0.98!11.65!DNMT3A;;chr12:54393880..54393962,+!p1@HOXC9!0.98!8.58!HOXC9;;chr15:57511589..57511608,+!p4@TCF12!0.98!8.47!TCF12;;chr2:45168959..45168990,+!p6@SIX3!0.98!8.47!SIX3;;chr21:34144157..34144175,-!p3@GCFC1!0.97!13.63!GCFC1;;chr1:10856639..10856662,-!p2@CASZ1!0.97!8.36!CASZ1;;chr4:41750020..41750029,-!p9@PHOX2B!0.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Line 41: Line 43:
|fonse_treatment_closure=
|fonse_treatment_closure=
|has_quality=
|has_quality=
|hg19bam=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.cell_line.hCAGE/small%2520cell%2520lung%2520carcinoma%2520cell%2520line%253aNCI-H82.CNhs12809.10842-111E5.hg19.nobarcode.bam
|hg19ctss=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.cell_line.hCAGE/small%2520cell%2520lung%2520carcinoma%2520cell%2520line%253aNCI-H82.CNhs12809.10842-111E5.hg19.ctss.bed.gz
|hg19fasta=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.cell_line.hCAGE/small%2520cell%2520lung%2520carcinoma%2520cell%2520line%253aNCI-H82.CNhs12809.10842-111E5.hg19.nobarcode.rdna.fa.gz
|hg38bam=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.cell_line.hCAGE/small%2520cell%2520lung%2520carcinoma%2520cell%2520line%253aNCI-H82.CNhs12809.10842-111E5.hg38.nobarcode.bam
|hg38ctss=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.cell_line.hCAGE/small%2520cell%2520lung%2520carcinoma%2520cell%2520line%253aNCI-H82.CNhs12809.10842-111E5.hg38.nobarcode.ctss.bed.gz
|id=FF:10842-111E5
|id=FF:10842-111E5
|is_a=EFO:0002091;;FF:0000210;;FF:0100189;;FF:0103026
|is_a=EFO:0002091;;FF:0000210;;FF:0100189;;FF:0103026
|is_obsolete=
|is_obsolete=
|library_id=CNhs12809
|library_id=CNhs12809
|library_id_phase_based=1:CNhs12809
|library_id_phase_based=2:CNhs12809
|microRNAs=
|microRNAs_nn=
|microRNAs_nonnovel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer/#/human#cage;sample;10842
|microRNAs_novel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer_novel/#/human#cage;sample;10842
|name=small cell lung carcinoma cell line:NCI-H82
|name=small cell lung carcinoma cell line:NCI-H82
|namespace=FANTOM5
|namespace=FANTOM5
Line 51: Line 62:
|profile_cagescan=,,,
|profile_cagescan=,,,
|profile_hcage=CNhs12809,LSID972,release012,COMPLETED
|profile_hcage=CNhs12809,LSID972,release012,COMPLETED
|profile_rnaseq=,,,
|profile_rnaseq=
|profile_srnaseq=,,,
|profile_srnaseq=,,,
|refex=http://refex.dbcls.jp/genelist.php?lang
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Line 65: Line 77:
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|sample_category=cell lines
Line 90: Line 103:
|top_motifs=CRX:4.36477954637;NANOG:3.29997853223;POU6F1:3.10311779936;VSX1,2:2.77848897349;PITX1..3:2.59487338469;NFY{A,B,C}:2.19840839167;AHR_ARNT_ARNT2:2.11727886659;NKX2-3_NKX2-5:2.02193876659;PAX8:1.98745347992;ADNP_IRX_SIX_ZHX:1.98575310233;BREu{core}:1.97170296338;POU1F1:1.96256366754;ZBTB16:1.91671021939;TOPORS:1.87180433538;TAL1_TCF{3,4,12}:1.81141245812;HOX{A6,A7,B6,B7}:1.78612966557;TEF:1.71505436692;GFI1:1.67316857931;LHX3,4:1.63770727821;NKX2-1,4:1.60667206452;E2F1..5:1.56555732981;PAX3,7:1.50752693519;FOXM1:1.4795605899;NRF1:1.45182642102;OCT4_SOX2{dimer}:1.4475094349;PATZ1:1.34490600076;RORA:1.31062801572;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:1.3084272642;TFDP1:1.27612572903;AIRE:1.26666488206;STAT5{A,B}:1.26621564749;RREB1:1.25562281135;YY1:1.24416026282;SOX{8,9,10}:1.22866201757;PDX1:1.19835135403;FOXP1:1.19371102493;ZNF143:1.18016156692;ZIC1..3:1.10203824904;ZFP161:1.10159914466;POU3F1..4:1.09853640982;MYOD1:1.09035391104;PBX1:1.05095744667;PRRX1,2:1.00473420805;MYB:0.990656617193;FOXQ1:0.905966414708;BPTF:0.902373282008;POU2F1..3:0.846935199517;EVI1:0.801097107363;CREB1:0.770455387974;GATA4:0.750890844663;PAX1,9:0.746411311557;ONECUT1,2:0.740691374546;FOX{F1,F2,J1}:0.684627754018;RFX1:0.674886848279;NR6A1:0.671975389695;CDX1,2,4:0.659990341906;CUX2:0.638805517176;CDC5L:0.615228618932;HIF1A:0.583734786638;ELK1,4_GABP{A,B1}:0.535874958949;HMGA1,2:0.534182732283;SOX17:0.525543906581;PAX5:0.51654166935;ARID5B:0.515399739796;MZF1:0.499678756278;ZNF384:0.483386321245;EN1,2:0.461512362197;RBPJ:0.454052408105;IKZF2:0.452260481242;PAX4:0.443842164194;JUN:0.434297562888;FOX{I1,J2}:0.425034674417;NKX6-1,2:0.418182305038;ATF4:0.409043936357;ATF5_CREB3:0.405331530665;ALX1:0.374203498213;FOXA2:0.363961577431;REST:0.361242151285;HOX{A4,D4}:0.351145951936;HOX{A5,B5}:0.34750049711;GATA6:0.320007114698;FOXP3:0.307091476912;LEF1_TCF7_TCF7L1,2:0.275486189661;ZBTB6:0.269142507889;ALX4:0.240786840929;HBP1_HMGB_SSRP1_UBTF:0.230720313587;SP1:0.217668463975;HOXA9_MEIS1:0.191941353661;PAX6:0.1858660048;NFIL3:0.179689639783;KLF4:0.166046485091;UFEwm:0.124634824618;MEF2{A,B,C,D}:0.122801866616;PRDM1:0.122469413075;SNAI1..3:0.0774079465515;RFX2..5_RFXANK_RFXAP:0.0770947843821;bHLH_family:0.0757371399054;XBP1:0.0527096105115;NHLH1,2:0.0511209276205;GTF2I:0.0127352842251;LMO2:0.0116266358904;NKX3-1:-0.0240431167322;AR:-0.0299646242357;MYFfamily:-0.0310839805874;NR1H4:-0.0358398473252;PAX2:-0.0480209486595;HNF1A:-0.0842916697796;FOXD3:-0.111978496465;NKX2-2,8:-0.120341548642;MED-1{core}:-0.145457781499;ZNF423:-0.183983671993;ESRRA:-0.217439952733;TFAP2B:-0.218531708361;SOX2:-0.256000501344;POU5F1:-0.271912134619;XCPE1{core}:-0.29651205554;MTF1:-0.315042100359;HES1:-0.316086333111;DBP:-0.327747862703;FOSL2:-0.343311260426;ZEB1:-0.350272379993;HNF4A_NR2F1,2:-0.350459062142;GFI1B:-0.385123095732;HAND1,2:-0.418179229321;FOX{D1,D2}:-0.419168867585;SOX5:-0.427218220652;NR5A1,2:-0.442844012024;T:-0.449841514683;TGIF1:-0.487356031226;EGR1..3:-0.49024696085;FOXN1:-0.492179192461;HSF1,2:-0.49760210339;NKX3-2:-0.530637116041;HIC1:-0.532746031251;MTE{core}:-0.540567092756;GCM1,2:-0.550812136853;NFKB1_REL_RELA:-0.589011588469;TBX4,5:-0.59585116697;ATF2:-0.596022128838;TBP:-0.598692716038;NFE2:-0.600285514861;NR3C1:-0.613416085238;MAZ:-0.617814292017;IKZF1:-0.625316542902;ATF6:-0.632530007633;SMAD1..7,9:-0.669474730127;NFE2L1:-0.689763480428;FOS_FOS{B,L1}_JUN{B,D}:-0.736374251692;CEBPA,B_DDIT3:-0.740902129924;SPI1:-0.741886250496;SPIB:-0.754039621842;BACH2:-0.773137130734;STAT1,3:-0.775374286104;GTF2A1,2:-0.792757210771;RUNX1..3:-0.81209038258;GZF1:-0.830924138263;NFE2L2:-0.836239523436;MYBL2:-0.852769325451;HLF:-0.852842667452;RXRA_VDR{dimer}:-0.858870945515;MAFB:-0.889643015702;TLX1..3_NFIC{dimer}:-0.901674676631;PPARG:-0.911563217422;TP53:-0.924056771887;RXR{A,B,G}:-0.927256223963;FOXL1:-0.928936898462;FOXO1,3,4:-0.99207026839;TFAP2{A,C}:-1.02483635687;SREBF1,2:-1.02681896321;ELF1,2,4:-1.03126296751;RXR{A,B,G}_{NR1H2,PPAR}dimers:-1.07139344028;SPZ1:-1.09448791655;DMAP1_NCOR{1,2}_SMARC:-1.10545432918;TLX2:-1.11208768688;TEAD1:-1.16309366206;EBF1:-1.17865372108;NANOG{mouse}:-1.23608028345;ZNF148:-1.27565798124;ZNF238:-1.3195619881;ETS1,2:-1.33638467859;IRF7:-1.44374020153;GLI1..3:-1.44551873596;IRF1,2:-1.50797731613;TFAP4:-1.50917067792;SRF:-1.57563656168;EP300:-1.6862174409;HMX1:-1.76130123002;NFATC1..3:-1.78419888108;NFIX:-1.86405856772;STAT2,4,6:-1.89432560545;ESR1:-1.96136570833;TFCP2:-2.33761972468
|top_motifs=CRX:4.36477954637;NANOG:3.29997853223;POU6F1:3.10311779936;VSX1,2:2.77848897349;PITX1..3:2.59487338469;NFY{A,B,C}:2.19840839167;AHR_ARNT_ARNT2:2.11727886659;NKX2-3_NKX2-5:2.02193876659;PAX8:1.98745347992;ADNP_IRX_SIX_ZHX:1.98575310233;BREu{core}:1.97170296338;POU1F1:1.96256366754;ZBTB16:1.91671021939;TOPORS:1.87180433538;TAL1_TCF{3,4,12}:1.81141245812;HOX{A6,A7,B6,B7}:1.78612966557;TEF:1.71505436692;GFI1:1.67316857931;LHX3,4:1.63770727821;NKX2-1,4:1.60667206452;E2F1..5:1.56555732981;PAX3,7:1.50752693519;FOXM1:1.4795605899;NRF1:1.45182642102;OCT4_SOX2{dimer}:1.4475094349;PATZ1:1.34490600076;RORA:1.31062801572;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:1.3084272642;TFDP1:1.27612572903;AIRE:1.26666488206;STAT5{A,B}:1.26621564749;RREB1:1.25562281135;YY1:1.24416026282;SOX{8,9,10}:1.22866201757;PDX1:1.19835135403;FOXP1:1.19371102493;ZNF143:1.18016156692;ZIC1..3:1.10203824904;ZFP161:1.10159914466;POU3F1..4:1.09853640982;MYOD1:1.09035391104;PBX1:1.05095744667;PRRX1,2:1.00473420805;MYB:0.990656617193;FOXQ1:0.905966414708;BPTF:0.902373282008;POU2F1..3:0.846935199517;EVI1:0.801097107363;CREB1:0.770455387974;GATA4:0.750890844663;PAX1,9:0.746411311557;ONECUT1,2:0.740691374546;FOX{F1,F2,J1}:0.684627754018;RFX1:0.674886848279;NR6A1:0.671975389695;CDX1,2,4:0.659990341906;CUX2:0.638805517176;CDC5L:0.615228618932;HIF1A:0.583734786638;ELK1,4_GABP{A,B1}:0.535874958949;HMGA1,2:0.534182732283;SOX17:0.525543906581;PAX5:0.51654166935;ARID5B:0.515399739796;MZF1:0.499678756278;ZNF384:0.483386321245;EN1,2:0.461512362197;RBPJ:0.454052408105;IKZF2:0.452260481242;PAX4:0.443842164194;JUN:0.434297562888;FOX{I1,J2}:0.425034674417;NKX6-1,2:0.418182305038;ATF4:0.409043936357;ATF5_CREB3:0.405331530665;ALX1:0.374203498213;FOXA2:0.363961577431;REST:0.361242151285;HOX{A4,D4}:0.351145951936;HOX{A5,B5}:0.34750049711;GATA6:0.320007114698;FOXP3:0.307091476912;LEF1_TCF7_TCF7L1,2:0.275486189661;ZBTB6:0.269142507889;ALX4:0.240786840929;HBP1_HMGB_SSRP1_UBTF:0.230720313587;SP1:0.217668463975;HOXA9_MEIS1:0.191941353661;PAX6:0.1858660048;NFIL3:0.179689639783;KLF4:0.166046485091;UFEwm:0.124634824618;MEF2{A,B,C,D}:0.122801866616;PRDM1:0.122469413075;SNAI1..3:0.0774079465515;RFX2..5_RFXANK_RFXAP:0.0770947843821;bHLH_family:0.0757371399054;XBP1:0.0527096105115;NHLH1,2:0.0511209276205;GTF2I:0.0127352842251;LMO2:0.0116266358904;NKX3-1:-0.0240431167322;AR:-0.0299646242357;MYFfamily:-0.0310839805874;NR1H4:-0.0358398473252;PAX2:-0.0480209486595;HNF1A:-0.0842916697796;FOXD3:-0.111978496465;NKX2-2,8:-0.120341548642;MED-1{core}:-0.145457781499;ZNF423:-0.183983671993;ESRRA:-0.217439952733;TFAP2B:-0.218531708361;SOX2:-0.256000501344;POU5F1:-0.271912134619;XCPE1{core}:-0.29651205554;MTF1:-0.315042100359;HES1:-0.316086333111;DBP:-0.327747862703;FOSL2:-0.343311260426;ZEB1:-0.350272379993;HNF4A_NR2F1,2:-0.350459062142;GFI1B:-0.385123095732;HAND1,2:-0.418179229321;FOX{D1,D2}:-0.419168867585;SOX5:-0.427218220652;NR5A1,2:-0.442844012024;T:-0.449841514683;TGIF1:-0.487356031226;EGR1..3:-0.49024696085;FOXN1:-0.492179192461;HSF1,2:-0.49760210339;NKX3-2:-0.530637116041;HIC1:-0.532746031251;MTE{core}:-0.540567092756;GCM1,2:-0.550812136853;NFKB1_REL_RELA:-0.589011588469;TBX4,5:-0.59585116697;ATF2:-0.596022128838;TBP:-0.598692716038;NFE2:-0.600285514861;NR3C1:-0.613416085238;MAZ:-0.617814292017;IKZF1:-0.625316542902;ATF6:-0.632530007633;SMAD1..7,9:-0.669474730127;NFE2L1:-0.689763480428;FOS_FOS{B,L1}_JUN{B,D}:-0.736374251692;CEBPA,B_DDIT3:-0.740902129924;SPI1:-0.741886250496;SPIB:-0.754039621842;BACH2:-0.773137130734;STAT1,3:-0.775374286104;GTF2A1,2:-0.792757210771;RUNX1..3:-0.81209038258;GZF1:-0.830924138263;NFE2L2:-0.836239523436;MYBL2:-0.852769325451;HLF:-0.852842667452;RXRA_VDR{dimer}:-0.858870945515;MAFB:-0.889643015702;TLX1..3_NFIC{dimer}:-0.901674676631;PPARG:-0.911563217422;TP53:-0.924056771887;RXR{A,B,G}:-0.927256223963;FOXL1:-0.928936898462;FOXO1,3,4:-0.99207026839;TFAP2{A,C}:-1.02483635687;SREBF1,2:-1.02681896321;ELF1,2,4:-1.03126296751;RXR{A,B,G}_{NR1H2,PPAR}dimers:-1.07139344028;SPZ1:-1.09448791655;DMAP1_NCOR{1,2}_SMARC:-1.10545432918;TLX2:-1.11208768688;TEAD1:-1.16309366206;EBF1:-1.17865372108;NANOG{mouse}:-1.23608028345;ZNF148:-1.27565798124;ZNF238:-1.3195619881;ETS1,2:-1.33638467859;IRF7:-1.44374020153;GLI1..3:-1.44551873596;IRF1,2:-1.50797731613;TFAP4:-1.50917067792;SRF:-1.57563656168;EP300:-1.6862174409;HMX1:-1.76130123002;NFATC1..3:-1.78419888108;NFIX:-1.86405856772;STAT2,4,6:-1.89432560545;ESR1:-1.96136570833;TFCP2:-2.33761972468
|xref=
|xref=
|zenbu_report=https://fantom.gsc.riken.jp/zenbu/reports/#miRNA_expression_atlas_human;search_select_hide=table111:FF:10842-111E5;search_select_hide=table117:FF:10842-111E5
}}
}}

Latest revision as of 15:09, 3 June 2020

Name:small cell lung carcinoma cell line:NCI-H82
Species:Human (Homo sapiens)
Library ID:CNhs12809
Sample type:cell lines
Genomic View: UCSC
RefEX:Specific genes
CAGEd-oPOSSUM:link
ZENBU report :link
Additional information
Sample information
strainNA
tissuelung
dev stageNA
sexmale
age40
cell typeunclassifiable
cell lineNCI-H82
companyATCC
collaborationFANTOM5 OSC CORE (contact: Al Forrest)
External link for information[{{{sample_info_link}}} {{{sample_info_link}}}]
RNA information
lot numberNA
catalog numberNA
sample typetotal RNA
extraction protocol (Details)OP-RNA-extraction-totalRNA-miRNeasy_Mini-v1.0

CAGE Accession numbers
MethodSample accession id
CAGE  SAMD00004718
Library accession numbers

Library idMethodExp. accession idRun accession id
CNhs12809 CAGE DRX008008 DRR008880
Accession ID Hg19

Library idBAMCTSS
CNhs12809 DRZ000305 DRZ001690
Accession ID Hg38

Library idBAMCTSS
CNhs12809 DRZ011655 DRZ013040
Download raw sequence, BAM & CTSS
Hg19
FastaBAMCTSS
downloaddownloaddonwload
Hg38
BAMCTSS
downloaddonwload

RNA-Seq Accession numbers
MethodSample accession id
RNA-Seq  SAMD00004718
Library accession numbers

Library idMethodExp. accession idRun accession id
RDhi10091 RNA-Seq DRX057148 DRR062907
Accession ID Hg19

Library idBAMCTSS
RDhi10091 DRZ007983


Relative expression to median (log10)

Transcription factors with enriched expression in this sampleRanked list of transcription factor promoter expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.



Co-expression clusters with enriched expression in this sampleRanked list of co-expression cluster expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed. <br>Analyst:NA <br><br>link to dataset.<br>data

Coexpression clusterscore
C0-CD14-Eosinophils-Neutrophils-Basophils-CD34-immature-Peripheral0
C1-testis-epididymis-embryonic-medulla-pituitary-trachea-caudate0
C10-occipital-temporal-parietal-brain-duodenum-Neurons-Neural0
C100-rhabdomyosarcoma-gastric-pineal-Wilms-cervical-mesodermal-endometrial0
C101-small-cerebellum-maxillary-colon-parietal-epididymis-merkel0
C102-neuroblastoma-testicular-pituitary-carcinosarcoma-rectum-acantholytic-iPS0
C103-CD4-CD8-Natural-Peripheral-Whole-Neutrophils-Basophils0
C104-Mast-Basophils-immature-CD14-CD34-eye-Natural0
C105-heart-skeletal-occipital-hippocampus-acute-Sebocyte-penis0.344
C106-Hep2-epitheloid-placenta-cervical-rectal-anaplastic-glassy0
C107-Neutrophils-CD14-Eosinophils-Monocytederived-Whole-Peripheral-blood0
C108-breast-hepatoblastoma-MCF7-parotid-salivary-submaxillary-prostate0
C109-Reticulocytes-non-acute-Hodgkin-Burkitt-retinoblastoma-lymphoma0.645
C11-cerebellum-medulla-pons-parietal-occipital-middle-medial0
C110-leukemia-chronic-Eosinophils-acute-Whole-CD34-Lymphatic0
C111-medulla-lung-trachea-testis-caudate-epididymis-throat0
C112-gastric-pancreas-temporal-duodenum-small-extraskeletal-adrenal0
C113-thyroid-throat-lung-lymph-small-colon-trachea0
C114-teratocarcinoma-medulloblastoma-carcinosarcoma-iPS-anaplastic-acute-neuroblastoma0
C115-pituitary-Neural-caudate-putamen-amygdala-medulla-hippocampus0
C116-myeloma-xeroderma-tonsil-CD19-spleen-lymph-trachea0
C117-serous-clear-kidney-neuroectodermal-mesothelioma-endometrial-Intestinal0
C118-cerebellum-parietal-occipital-medial-middle-frontal-insula0
C119-CD4-CD8-Natural-Neutrophils-CD14-Peripheral-CD190.0453
C12-Mast-Basophils-immature-chorionic-mature-CD14-Eosinophils0
C120-immature-salivary-tongue-skin-cervical-CD14-CD340
C121-NK-Natural-CD8-CD4-anaplastic-chronic-B0
C122-chronic-Reticulocytes-skeletal-leukemia-acute-colon-Tracheal0
C123-CD19-Natural-CD8-CD4-CD14-Peripheral-Basophils0
C124-small-temporal-duodenum-colon-gall-signet-Hepatocyte0
C125-mucinous-alveolar-mesothelioma-Smooth-lung-CD14-Nucleus0
C126-gastrointestinal-argyrophil-smallcell-merkel-bile-insula-brain0
C127-maxillary-small-hepatoblastoma-hepatocellular-alveolar-colon-argyrophil0
C128-testicular-choriocarcinoma-H9-teratocarcinoma-pancreatic-iPS-HES3GFP0
C129-liver-Hepatocyte-colon-duodenum-temporal-testicular-small0
C13-Neutrophils-Eosinophils-CD14-Monocytederived-Whole-Peripheral-CD40
C130-iPS-HES3GFP-H9-teratocarcinoma-testicular-colon-Alveolar0
C131-lung-trachea-Alveolar-thyroid-umbilical-throat-skin0
C132-acute-small-Dendritic-Macrophage-CD14-Neutrophils-Monocytederived0
C133-signet-gall-small-kidney-colon-ductal-adenocarcinoma0
C134-skeletal-diaphragm-tongue-throat-Skeletal-skin-penis0
C135-neuroblastoma-retinoblastoma-carcinoid-choriocarcinoma-testicular-acute-rectum0
C136-Wilms-extraskeletal-anaplastic-rhabdomyosarcoma-cholangiocellular-nonsmall-neuroectodermal0
C137-large-ductal-melanoma-cervical-Endothelial-Smooth-chronic0
C138-diffuse-Burkitt-lymphangiectasia-lymphoma-acute-CD19-pineal0
C139-astrocytoma-skin-salivary-gall-serous-Mallassezderived-renal0
C14-Whole-blood-Reticulocytes-liver-Neutrophils-Eosinophils-spleen0
C140-Renal-Endothelial-Hepatic-Lymphatic-heart-lung-spleen0
C141-Hodgkin-acute-thymus-chronic-vein-CD4-B0
C142-Preadipocyte-Fibroblast-hepatic-Ewing-Adipocyte-Olfactory-Hair0
C143-Monocytederived-CD14-Macrophage-Dendritic-Basophils-CD14CD16-Osteoblast0
C144-CD4-tonsil-NK-appendix-CD8-splenic-mycosis0
C145-neuroblastoma-peripheral-neuroectodermal-neuroepithelioma-carcinoid-adult-extraskeletal0
C146-lymphangiectasia-lymphoma-gall-lymph-tonsil-gastric-transitionalcell0
C147-Neutrophils-Eosinophils-CD4-CD14-CD8-Natural-Peripheral0.0453
C148-kidney-small-epididymis-pancreas-serous-duodenum-temporal0
C149-occipital-medial-brain-amygdala-parietal-cerebral-cerebellum0
C15-anaplastic-small-skeletal-neuroblastoma-parietal-temporal-tongue0
C150-merkel-carcinoid-nonsmall-gastrointestinal-argyrophil-pineal-small0
C151-CD14-Natural-Basophils-CD8-Eosinophils-CD4-Mast0
C152-peripheral-neuroectodermal-neuroepithelioma-neuroblastoma-testicular-carcinoid-lung0
C153-rhabdomyosarcoma-liposarcoma-pancreatic-somatostatinoma-Reticulocytes-lymphoma-testicular0
C154-adenocarcinoma-Mesenchymal-Cardiac-small-sacrococcigeal-Smooth-Prostate0
C155-pituitary-placenta-nonsmall-cervical-smallcell-choriocarcinoma-epitheloid0
C156-plasma-splenic-hereditary-B-large-xeroderma-b0
C157-testicular-H9-testis-iPS-teratocarcinoma-colon-trachea0
C158-adrenal-gastric-temporal-parietal-duodenum-caudate-putamen0
C159-choriocarcinoma-pancreatic-placenta-chorionic-testicular-bronchioalveolar-seminal0
C16-medial-amygdala-occipital-parietal-olfactory-putamen-brain0
C160-medulla-Hepatocyte-retina-corpus-liver-pineal-cerebral0
C161-mesothelioma-Mesothelial-acute-mesenchymal-extraskeletal-renal-placenta0
C162-spinal-locus-medulla-substantia-thalamus-globus-diencephalon0
C163-Skeletal-skeletal-Pericytes-Hepatic-rhabdomyosarcoma-throat-mesenchymal0
C164-signet-corpus-optic-mucinous-substantia-salivary-choriocarcinoma0
C165-epithelioid-Adipocyte-mesothelioma-myxofibrosarcoma-lung-gastric-Mesothelial0
C166-Macrophage-Monocytederived-Dendritic-adipose-lymph-CD14-lung0
C167-Basophils-Mast-Eosinophils-Neutrophils-Peripheral-Whole-CD40
C168-Mast-CD14-immature-Basophils-Eosinophils-CD34-Peripheral0
C169-hereditary-adult-gall-lymphangiectasia-chronic-b-choriocarcinoma0
C17-Mast-CD14-Monocytederived-Lymphatic-Smooth-mesenchymal-Macrophage0
C170-epitheloid-cervical-Hep2-keratoacanthoma-adult-neuroblastoma-signet0
C171-merkel-neuroblastoma-pineal-retinoblastoma-carcinoid-small-eye0
C172-chorionic-skeletal-tongue-amniotic-liver-gastrointestinal-Pericytes0
C173-Adipocyte-mature-skin-left-Hepatocyte-Osteoblast-adipose0
C174-CD14-Neutrophils-Smooth-mesothelioma-embryonic-Monocytederived-Eosinophils0
C175-Eosinophils-Neutrophils-CD4-Basophils-CD19-CD8-Natural0
C176-Eosinophils-Neutrophils-Mast-CD14-CD4-Basophils-CD190.0751
C177-melanoma-Melanocyte-mesenchymal-retina-Mallassezderived-Gingival-squamous0
C178-spleen-liver-Hepatocyte-b-lymph-vein-thymus0
C179-CD19-Peripheral-lymphoma-blood-lymph-spleen-tonsil0
C18-CD4-CD8-thymus-Whole-Peripheral-Natural-blood0
C180-skeletal-heart-Hepatocyte-acute-occipital-hippocampus-middle0.0847
C181-liposarcoma-somatostatinoma-neuroblastoma-mesothelioma-nonsmall-small-Alveolar0
C182-renal-mature-mesothelioma-lung-Mammary-Adipocyte-acute0
C183-acute-non-CD34-diffuse-CD133-myeloma-Burkitt0
C184-somatostatinoma-smallcell-nonsmall-small-gastrointestinal-pineal-thyroid0
C185-small-adrenal-gastric-Mesenchymal-acute-HES3GFP-testis0
C186-squamous-papillotubular-large-Tracheal-oral-Small-epidermoid0
C187-migratory-immature-Dendritic-CD19-CD14-Monocytederived-Macrophage0
C188-left-heart-tongue-skeletal-Skeletal-diaphragm-throat0
C189-b-splenic-tonsil-CD19-lymph-appendix-spleen0
C19-embryonic-testis-cord-chronic-CD14-NK-mesothelioma0
C190-colon-small-rectum-duodenum-appendix-temporal-oral0
C191-leiomyoblastoma-Mast-parietal-acute-bone-neuroepithelioma-embryonic0
C192-Neutrophils-CD14-Peripheral-Eosinophils-CD8-Natural-CD40
C193-Mesenchymal-Adipocyte-mature-Cardiac-heart-CD14CD16-CD140
C194-MCF7-breast-prostate-Intestinal-diffuse-Wilms-Alveolar0
C195-Small-Gingival-Bronchial-Smooth-mesenchymal-Urothelial-Tracheal0
C196-testicular-iPS-H9-teratocarcinoma-HES3GFP-choriocarcinoma-endometrial0
C197-tongue-esophagus-tonsil-salivary-cervix-nasal-Gingival0
C198-Mesenchymal-Hair-Hepatic-Fibroblast-Smooth-tenocyte-Pericytes0
C199-glioblastoma-B-osteosarcoma-Fibroblast-heart-rhabdomyosarcoma-myxofibrosarcoma0
C2-Eosinophils-Neutrophils-CD14-Whole-Basophils-Peripheral-Mast0
C20-heart-left-skeletal-diaphragm-tongue-umbilical-throat0
C200-seminal-Cardiac-Smooth-Hair-submaxillary-Neutrophils-mixed-0.211
C201-colon-small-adenocarcinoma-duodenum-temporal-signet-gall0
C202-salivary-skin-penis-tongue-uterus-cervical-immature0
C203-acute-NK-chronic-CD133-lymphoma-immature-Dendritic0
C204-Smooth-nasal-CD4-CD19-CD8-CD14-CD340
C205-mycosis-cord-hairy-xeroderma-CD4-B-b0
C206-melanoma-somatostatinoma-nonsmall-small-neuroblastoma-smallcell-pituitary0
C207-Corneal-Keratinocyte-Esophageal-Mammary-Bronchial-Urothelial-Sebocyte0
C208-skin-amniotic-papillotubular-salivary-umbilical-Alveolar-serous0
C209-acute-myelodysplastic-CD34-granulocyte-CD133-liver-spleen0
C21-cord-mycosis-hairy-xeroderma-adult-CD4-anaplastic0
C210-Burkitt-lymphoma-appendix-acute-diffuse-CD19-tonsil0
C211-small-Hepatocyte-liver-colon-temporal-duodenum-kidney0
C212-chronic-acute-Whole-Reticulocytes-leukemia-blood-CD340
C213-CD14-Natural-CD8-CD4-Basophils-Eosinophils-Peripheral0
C214-Neurons-Neural-duodenum-temporal-occipital-parietal-brain0
C215-chronic-acute-peripheral-Hepatocyte-osteosarcoma-NK-immature0
C216-osteosarcoma-Smooth-Mesenchymal-large-neuroectodermal-acute-CD340
C217-carcinoid-neuroectodermal-mature-mesodermal-colon-acute-occipital0
C218-tonsil-lymph-CD19-spleen-colon-appendix-salivary0
C219-nasal-Basophils-amniotic-Melanocyte-CD14-Osteoblast-duodenum0
C22-CD4-CD8-Natural-Basophils-CD14-Peripheral-CD190
C220-Adipocyte-mature-left-breast-skin-liver-adipose0
C221-alveolar-Osteoblast-Myoblast-mesenchymal-liposarcoma-Smooth-hepatocellular0
C222-Melanocyte-Tracheal-Neutrophils-seminal-Smooth-Hair-Chondrocyte-0.19
C223-Chondrocyte-basal-renal-Fibroblast-Smooth-spindle-Synoviocyte0
C224-clear-serous-pleomorphic-choriocarcinoma-mesothelioma-amniotic-renal0
C225-ductal-alveolar-giant-prostate-salivary-squamous-Tracheal0
C226-Corneal-Keratinocyte-Esophageal-Urothelial-Mammary-Bronchial-Tracheal0
C227-chorionic-amniotic-Mesenchymal-Placental-gastric-diaphragm-tongue0
C228-colon-Intestinal-Prostate-hepatoblastoma-hepatocellular-testis-adult0
C229-Mesenchymal-CD4-Melanocyte-acute-skeletal-left-heart0.0863
C23-CD4-CD8-Natural-Peripheral-Basophils-CD19-CD140
C230-aorta-normal-heart-penis-osteosarcoma-basal-lung0
C231-Mesothelial-mesenchymal-mesothelioma-Fibroblast-Preadipocyte-leiomyoma-mycosis0
C232-teratocarcinoma-HES3GFP-H9-iPS-testicular-neuroblastoma-cerebellum0
C233-uterus-cervix-ovary-epididymis-colon-rectum-MCF70
C234-oral-epidermoid-malignant-cervical-ductal-lung-keratoacanthoma0
C235-Intestinal-Prostate-liver-colon-small-kidney-pancreas0
C236-CD14-Neutrophils-Monocytederived-renal-Eosinophils-testis-mesothelioma0
C237-acute-breast-testicular-hepatoblastoma-chronic-argyrophil-Bronchial0
C238-stomach-gall-breast-duodenum-temporal-MCF7-smallcell0
C239-CD4-lymphangiectasia-CD8-NK-mycosis-Renal-hairy0
C24-pineal-eye-retina-retinoblastoma-medulloblastoma-small-cerebral0
C240-Adipocyte-Preadipocyte-Osteoblast-Chondrocyte-tenocyte-Synoviocyte-mesenchymal0
C241-Reticulocytes-chronic-Tracheal-Hodgkin-Endothelial-Hair-thymus0.212
C242-acute-Chondrocyte-myelodysplastic-granulocyte-biphenotypic-Fibroblast-stomach0
C243-Chondrocyte-trachea-Synoviocyte-mesodermal-renal-Fibroblast-Ewing0
C244-CD14-Monocytederived-Hepatocyte-heart-Neutrophils-acute-Macrophage0
C245-prostate-penis-salivary-esophagus-kidney-Neutrophils-Pancreatic0
C246-Neutrophils-Eosinophils-Whole-CD14-CD14CD16-Basophils-migratory-0.0184
C247-pons-locus-medulla-spinal-paracentral-medial-occipital0
C248-iPS-Aortic-Hep2-amygdala-acute-medial-Myoblast0
C249-nonsmall-small-smallcell-occipital-somatostatinoma-maxillary-medial0
C25-small-colon-temporal-duodenum-liver-Hepatocyte-gall0
C250-Mast-Neutrophils-CD14-Eosinophils-CD8-Peripheral-CD40
C251-gall-tonsil-trachea-CD14-salivary-throat-tongue0
C252-hepatic-Olfactory-sacrococcigeal-leiomyoma-normal-Synoviocyte-glioblastoma0
C253-spleen-rhabdomyosarcoma-Hepatocyte-small-uterus-liver-rectum0
C254-prostate-rhabdomyosarcoma-seminal-Fibroblast-transitionalcell-Smooth-Iris0
C255-Wilms-leiomyoblastoma-kidney-adrenal-MCF7-epithelioid-Mast0
C256-occipital-caudate-amygdala-medial-thalamus-hippocampus-medulla0
C257-pineal-insula-frontal-occipital-temporal-medial-paracentral0
C258-hepatoblastoma-hepatocellular-signet-colon-Intestinal-Prostate-gastric0
C259-Preadipocyte-Adipocyte-Fibroblast-Chondrocyte-tenocyte-normal-Ewing0
C26-Eosinophils-Neutrophils-CD14-CD14CD16-Basophils-Monocytederived-Whole0
C260-acute-chronic-Natural-NK-Basophils-biphenotypic-blood0
C261-locus-medial-parietal-pons-diencephalon-olfactory-spinal0.19
C262-breast-MCF7-skeletal-Reticulocytes-mucinous-hepatoblastoma-Wilms0
C263-cervical-keratoacanthoma-tongue-skin-esophagus-throat-tonsil0
C264-giant-keratoacanthoma-colon-fibrosarcoma-HES3GFP-Hep2-acute0
C265-CD4-Eosinophils-CD14-Natural-CD19-Basophils-CD80
C266-acute-chronic-leukemia-small-choriocarcinoma-hepatoma-Mast0
C267-pancreatic-placenta-choriocarcinoma-testicular-teratocarcinoma-chorionic-clear0
C268-Mallassezderived-Urothelial-Gingival-Small-Bronchial-Tracheal-Prostate0
C269-Basophils-Mast-Eosinophils-mature-CD14-chorionic-CD40
C27-pancreas-temporal-duodenum-salivary-ductus-umbilical-lung0
C270-CD4-Fibroblast-acute-iPS-Aortic-CD34-Smooth0
C271-pineal-spinal-locus-globus-medulla-thalamus-cerebellum0.0863
C272-CD19-CD4-CD8-Whole-Peripheral-lymph-tonsil0
C273-Neutrophils-CD14-Eosinophils-Monocytederived-CD4-Natural-Mast0.0453
C274-CD14-Mast-immature-Basophils-mature-vagina-Hepatocyte0
C275-pons-medulla-cerebellum-locus-thalamus-diencephalon-spinal0
C276-mesothelioma-kidney-renal-small-clear-cerebellum-Renal0
C277-mesothelioma-epithelioid-thyroid-extraskeletal-alveolar-glioblastoma-adenocarcinoma0
C278-amygdala-hippocampus-insula-medial-putamen-temporal-olfactory0
C279-parietal-cerebellum-occipital-temporal-middle-duodenum-medial0.0453
C28-thymus-acute-vein-Hodgkin-chronic-throat-Dendritic0
C280-Mast-Natural-CD19-CD8-Eosinophils-CD34-CD40.00382
C281-Hodgkin-Reticulocytes-chronic-NK-acute-retinoblastoma-small0.637
C282-acute-B-tonsil-CD19-submaxillary-lymph-throat0
C283-tenocyte-Chondrocyte-mesenchymal-Macrophage-pleomorphic-Synoviocyte-cholangiocellular0
C284-parietal-occipital-medial-temporal-olfactory-locus-hippocampus0.19
C285-cervical-Hep2-small-colon-temporal-duodenum-bronchogenic0
C286-cerebellum-occipital-optic-parietal-globus-caudate-medial0
C287-Hepatocyte-Chondrocyte-Adipocyte-Synoviocyte-liver-tenocyte-mesenchymal0
C288-Chondrocyte-Renal-Pericytes-Fibroblast-aorta-Smooth-Meningeal0
C289-chorionic-skeletal-heart-Mast-amniotic-granulosa-left0
C29-mature-adipose-Adipocyte-breast-Lymphatic-vein-heart0
C290-Eosinophils-CD14-Basophils-Mast-CD4-CD8-immature0
C291-spinal-substantia-retina-medulla-tongue-skeletal-trachea0
C292-Mesenchymal-skin-umbilical-Adipocyte-mesenchymal-Chondrocyte-skeletal0
C293-CD14-CD14CD16-Basophils-Peripheral-immature-Eosinophils-CD340
C294-CD14-Macrophage-Monocytederived-CD14CD16-Neutrophils-Basophils-Peripheral0
C295-Fibroblast-Smooth-Myoblast-Chondrocyte-hepatic-Synoviocyte-Preadipocyte0
C296-gall-small-mesothelioma-acute-bronchioalveolar-epidermoid-mixed0
C297-Eosinophils-CD4-Basophils-Natural-Neutrophils-CD8-Peripheral0
C298-small-optic-substantia-thalamus-diencephalon-globus-occipital0
C299-CD14CD16-Eosinophils-Neutrophils-CD14-Whole-Basophils-blood0
C3-occipital-temporal-insula-medial-postcentral-frontal-amygdala0
C30-thyroid-throat-mesothelioma-mucinous-trachea-chorionic-mesenchymal0
C300-CD4-CD8-NK-Natural-blood-mycosis-Basophils0
C301-Smooth-mesenchymal-Endothelial-Hepatic-basal-hepatic-chorionic0
C302-acute-peripheral-Neutrophils-NK-myelodysplastic-CD34-carcinoid0
C303-CD14-Basophils-Peripheral-Eosinophils-CD14CD16-Neutrophils-Whole0
C305-heart-skeletal-smooth-left-bladder-penis-esophagus0
C31-skeletal-tongue-diaphragm-throat-penis-skin-trachea0
C32-middle-occipital-parietal-hippocampus-amygdala-medial-olfactory0
C33-Reticulocytes-liver-Whole-blood-chronic-acute-spleen0
C34-placenta-chorionic-choriocarcinoma-mesothelioma-Wilms-Smooth-bile0
C35-caudate-putamen-diencephalon-nucleus-globus-thalamus-insula0
C36-B-b-splenic-plasma-xeroderma-adrenal-Burkitt0
C37-salivary-submaxillary-parotid-seminal-tongue-ductus-trachea0
C38-extraskeletal-rhabdomyosarcoma-adrenal-rectal-mesothelioma-lung-Wilms0
C39-epididymis-ductus-seminal-testis-acute-thyroid-CD1330
C4-optic-corpus-substantia-medulla-spinal-thalamus-globus0
C40-eye-retina-Lens-pineal-tongue-retinoblastoma-small0
C41-retina-eye-medulla-Retinal-medulloblastoma-kidney-pineal0
C42-small-lung-maxillary-pharyngeal-Mesenchymal-Wilms-colon0
C43-ductus-seminal-duodenum-temporal-gall-prostate-bladder0
C44-Dendritic-CD19-CD133-granulocyte-acute-thymus-immature0
C45-testicular-choriocarcinoma-H9-teratocarcinoma-Wilms-pancreatic-iPS0
C46-acute-Hodgkin-thymus-CD8-chronic-CD4-merkel0
C47-CD19-Burkitt-acute-xeroderma-tonsil-lymphoma-appendix0
C48-smooth-bladder-esophagus-colon-penis-aorta-uterus0
C49-H9-iPS-testicular-HES3GFP-teratocarcinoma-hepatoblastoma-choriocarcinoma0
C5-Hepatocyte-liver-hepatocellular-Intestinal-kidney-small-pancreas0
C50-chorionic-placenta-amniotic-migratory-smallcell-chronic-choriocarcinoma0
C51-kidney-mesothelioma-renal-signet-gall-lung-pancreas0
C52-adult-NK-chronic-cord-testis-embryonic-myeloma0
C53-medulloblastoma-pineal-retinoblastoma-small-retina-eye-pituitary0
C54-Dendritic-Macrophage-Monocytederived-CD14-leiomyoma-adipose-immature0
C55-hepatocellular-Intestinal-liver-Prostate-fibrosarcoma-Hepatocyte-hepatoblastoma0
C56-heart-left-umbilical-skeletal-penis-diaphragm-tongue0
C57-Neutrophils-Eosinophils-Whole-CD4-CD8-CD19-Natural0
C58-Melanocyte-melanoma-retina-Retinal-eye-migratory-H90
C59-Smooth-Fibroblast-Mesenchymal-tenocyte-Ewing-skin-hepatic0
C6-CD14-Eosinophils-Basophils-Peripheral-CD34-Natural-immature0
C60-esophagus-tonsil-throat-tongue-uterus-cervix-cervical0
C61-migratory-Dendritic-immature-Macrophage-xeroderma-cord-b0
C62-Burkitt-tonsil-CD19-submaxillary-spleen-salivary-lymph0
C63-neuroectodermal-neuroblastoma-carcinoid-peripheral-chronic-neuroepithelioma-acute0
C64-Mast-chronic-acute-immature-chorionic-Basophils-Dendritic0
C65-CD14-Eosinophils-Monocytederived-Basophils-immature-Macrophage-Neutrophils0
C66-cerebellum-middle-occipital-parietal-medial-amygdala-hippocampus0
C67-CD14-Monocytederived-Macrophage-dura-Dendritic-spleen-lung0
C68-amniotic-chorionic-Placental-salivary-placenta-tongue-mesothelioma0
C69-anaplastic-CD14-cord-hairy-mycosis-adult-NK0
C7-CD14-Eosinophils-Neutrophils-Smooth-Basophils-Macrophage-Mast0
C70-parotid-submaxillary-salivary-throat-trachea-aorta-tongue0
C71-Monocytederived-Macrophage-CD14-Dendritic-Osteoblast-leiomyoma-Prostate0
C72-skeletal-tongue-throat-heart-diaphragm-penis-left0
C73-pineal-eye-retina-caudate-cerebellum-left-parietal0
C74-splenic-B-b-plasma-xeroderma-lymphoma-hairy0
C75-Eosinophils-Natural-CD8-Basophils-CD14-CD4-Peripheral0
C76-argyrophil-gastrointestinal-temporal-duodenum-neuroblastoma-merkel-smallcell0
C77-Saos2-osteosarcoma-Neutrophils-Natural-Chondrocyte-Basophils-CD80
C78-lymphoma-plasma-tonsil-appendix-lymph-seminal-trachea0
C79-chorionic-Chondrocyte-Cardiac-Smooth-Fibroblast-Preadipocyte-Mesenchymal0
C8-Natural-CD8-Basophils-CD4-CD14-Peripheral-CD340
C80-immature-migratory-CD14-Dendritic-splenic-cord-Mast0
C81-trachea-salivary-throat-aorta-eye-submaxillary-parotid0
C82-Basophils-CD14-Eosinophils-Natural-Peripheral-immature-CD340
C83-choriocarcinoma-pancreatic-placenta-chorionic-HES3GFP-testicular-amniotic0
C84-choriocarcinoma-pancreatic-Wilms-Mallassezderived-thymus-salivary-colon0
C85-neuroblastoma-carcinoid-retinoblastoma-small-pineal-rhabdomyosarcoma-medulloblastoma0
C86-colon-carcinoid-small-neuroectodermal-giant-large-neuroepithelioma0
C87-retinoblastoma-left-nonsmall-heart-small-diaphragm-bronchogenic0.0863
C88-Melanocyte-melanoma-Macrophage-Mesenchymal-migratory-Dendritic-Monocytederived0
C89-small-retinoblastoma-medulloblastoma-iPS-acantholytic-eye-bronchogenic0.861
C9-skeletal-diaphragm-tongue-throat-penis-heart-left0
C90-neuroectodermal-peripheral-neuroepithelioma-neuroblastoma-carcinoid-parietal-putamen0
C91-Fibroblast-Smooth-mesenchymal-Mesothelial-Small-Preadipocyte-Hair0
C92-CD14CD16-CD14-Eosinophils-Basophils-Neutrophils-Macrophage-Whole0
C93-chronic-acute-leukemia-acantholytic-medulloblastoma-testis-papillotubular0
C94-smallcell-adrenal-lung-nonsmall-small-somatostatinoma-teratocarcinoma0
C95-lung-aorta-trachea-penis-Alveolar-throat-endometrioid0
C96-non-acute-tonsil-spleen-Burkitt-lymphoma-appendix0
C97-small-smallcell-gastrointestinal-argyrophil-putamen-duodenum-brain0
C98-CD8-Natural-Basophils-blood-CD4-Peripheral-Whole0
C99-hairy-mycosis-submaxillary-salivary-cord-kidney-parotid0



Repeat families with enriched expression in this sample<b>Summary:</b>Ranked list of repeat family expression in this sample relative tothe median expression in the FANTOM5 collection is shown. Value is log10transformed.<br><b>Analyst:</b>NA<br><br>link to dataset.<br>data



TFBS(DNA)motifs over-represented in proximal region of promoters active in this sample

JASPAR motifs<b>Summary:</b>Association of JASPAR motif to the promoter expression in thissample. Pearson's correlation between the number of TFBSs estimated byusing the position-weight matrix for each promoter and its expression isexpressed as Z-score by taking the ones based on random position-weightmatrix, and the tail probability of the normal distribution correspondingto the Z-score is taken as the resulting P-value. Lower P-value indicatesmore (non-random) association of the motif to promoter expression<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data

library id: CNhs12809

Jaspar motifP-value
MA0002.22.02065e-4
MA0003.10.194
MA0004.10.218
MA0006.10.086
MA0007.10.287
MA0009.10.636
MA0014.10.849
MA0017.10.00411
MA0018.20.00281
MA0019.10.63
MA0024.17.99762e-7
MA0025.10.808
MA0027.10.449
MA0028.10.387
MA0029.10.722
MA0030.10.576
MA0031.10.635
MA0035.20.922
MA0038.12.41488e-4
MA0039.20.701
MA0040.10.0845
MA0041.10.149
MA0042.10.411
MA0043.10.393
MA0046.10.206
MA0047.20.524
MA0048.10.486
MA0050.17.34393e-17
MA0051.12.832e-10
MA0052.10.243
MA0055.10.316
MA0057.10.0742
MA0058.10.167
MA0059.10.043
MA0060.14.0962e-17
MA0061.10.0138
MA0062.20.739
MA0065.20.0124
MA0066.10.366
MA0067.10.94
MA0068.10.213
MA0069.10.668
MA0070.10.283
MA0071.10.541
MA0072.10.905
MA0073.10.618
MA0074.10.317
MA0076.10.111
MA0077.10.122
MA0078.10.975
MA0079.20.172
MA0080.23.19174e-12
MA0081.10.0214
MA0083.15.11573e-4
MA0084.10.0556
MA0087.10.0937
MA0088.10.291
MA0090.10.00239
MA0091.10.166
MA0092.10.147
MA0093.10.162
MA0099.28.18351e-17
MA0100.10.254
MA0101.10.00663
MA0102.29.57865e-4
MA0103.10.874
MA0104.20.00371
MA0105.10.202
MA0106.10.103
MA0107.17.53096e-4
MA0108.20.187
MA0111.10.807
MA0112.20.00259
MA0113.10.062
MA0114.10.029
MA0115.10.981
MA0116.10.427
MA0117.10.88
MA0119.10.293
MA0122.10.497
MA0124.10.662
MA0125.10.0206
MA0131.10.429
MA0135.10.139
MA0136.14.59139e-12
MA0137.21.19067e-5
MA0138.20.854
MA0139.10.995
MA0140.10.891
MA0141.10.316
MA0142.10.237
MA0143.10.429
MA0144.11.11556e-6
MA0145.10.0366
MA0146.10.0419
MA0147.10.00341
MA0148.10.33
MA0149.10.099
MA0150.11.74514e-4
MA0152.10.95
MA0153.10.451
MA0154.10.134
MA0155.10.157
MA0156.12.30762e-9
MA0157.10.0887
MA0159.10.0275
MA0160.10.146
MA0162.10.211
MA0163.10.025
MA0164.10.745
MA0258.10.16
MA0259.10.0202



FANTOM5 phase1 novel unique motifs<b>Summary:</b>Association of the 169 novel and unique motifs discovered in FANTOM5 phase1 in this sample. Among the de-novo motifs discovered by DMF, HOMER,ChIPMunk, and ScanAll, only novel motifs are selected after comparison with known motif sets, and their clustering based on MACRO-APE resulted in169 novel and unique motifs. Their association to the promoter expression is evaluated in the same way to the JASPAR motif above<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data

library id: CNhs12809

Novel motifP-value
10.818
100.339
1000.615
1010.763
1020.4
1030.05
1040.717
1050.46
1060.00434
1070.00295
1080.797
1090.0622
110.328
1100.734
1110.999
1120.281
1130.696
1140.22
1150.521
1160.952
1170.359
1180.967
1190.408
120.499
1200.477
1210.876
1220.939
1230.165
1240.637
1250.454
1260.419
1270.703
1280.0875
1290.593
130.869
1300.575
1310.463
1320.181
1330.853
1340.935
1350.016
1360.415
1370.138
1380.276
1390.054
140.386
1400.618
1410.181
1420.814
1430.266
1440.649
1450.495
1460.436
1470.935
1480.0189
1490.0616
150.32
1500.38
1510.168
1520.00463
1530.858
1540.729
1550.923
1560.805
1570.224
1580.257
1590.0351
160.132
1600.684
1610.294
1620.537
1630.238
1640.195
1650.106
1660.616
1670.719
1680.0541
1690.02
170.386
180.484
190.299
20.0708
200.391
210.798
220.0713
230.00859
240.238
250.555
260.408
270.0342
280.952
290.424
30.239
300.15
310.535
320.00656
330.211
340.281
350.374
360.882
370.0873
380.352
390.148
40.474
400.958
410.133
420.651
430.157
440.93
450.245
460.415
470.828
480.64
490.534
50.113
500.442
510.367
520.17
530.896
540.323
550.0492
560.434
570.581
580.407
590.0569
60.76
600.0224
610.645
620.183
630.179
640.962
650.075
660.155
670.866
680.944
690.852
70.548
700.0162
710.109
720.0651
730.00261
740.0919
750.404
760.793
770.0457
780.99
790.672
80.386
800.0157
810.472
820.125
830.418
840.239
850.0292
860.506
870.219
880.989
890.00881
90.0881
900.723
910.324
920.0438
930.645
940.236
950.236
960.104
970.41
980.489
990.859



de novo motifs identified by HOMER in promoters active in this sample<b>Summary:</b>The result of HOMER in this sample is shown.<br><b>Analyst:</b>NA <br> library id: CNhs12809


FANTOM5 (FF) ontology

Direct parent terms


Ancestor terms (non development)<b>Summary:</b>Connected ontology terms with is_a, part_of or located_in relationship <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source data<br>data

CL: Cell type
0000000 (cell), 0000000 (cell)
0000003 (native cell)
0000548 (animal cell)
0000066 (epithelial cell)
0000082 (epithelial cell of lung)
0000255 (eukaryotic cell)

DOID: Disease
4 (disease)
0050686 (organ system cancer)
0050615 (respiratory system cancer)
162 (cancer)
14566 (disease of cellular proliferation)
0050687 (cell type cancer)
1324 (lung cancer)
305 (carcinoma)
1325 (bronchus cancer)
3905 (lung carcinoma)
5409 (lung small cell carcinoma)
3904 (bronchogenic carcinoma)

UBERON: Anatomy
0000468 (multi-cellular organism)
0002048 (lung)
0002100 (trunk)
0000483 (epithelium)
0000479 (tissue)
0000064 (organ part)
0004119 (endoderm-derived structure)
0000466 (immaterial anatomical entity)
0000062 (organ)
0004111 (anatomical conduit)
0000475 (organism subdivision)
0000061 (anatomical structure)
0000465 (material anatomical entity)
0000063 (organ segment)
0004802 (respiratory tract epithelium)
0000025 (tube)
0005911 (endo-epithelium)
0000477 (anatomical cluster)
0000467 (anatomical system)
0001062 (anatomical entity)
0000480 (anatomical group)
0000119 (cell layer)
0009569 (subdivision of trunk)
0005178 (thoracic cavity element)
0000072 (segment of respiratory tract)
0005177 (trunk region element)
0004807 (respiratory system epithelium)
0000117 (respiratory tube)
0000171 (respiration organ)
0000115 (lung epithelium)
0000464 (anatomical space)
0005181 (thoracic segment organ)
0010317 (germ layer / neural crest derived structure)
0000065 (respiratory tract)
0000170 (pair of lungs)
0001004 (respiratory system)
0002224 (thoracic cavity)
0000915 (thoracic segment of trunk)

FF: FANTOM5
0000102 (sample by type)
0000003 (cell line sample)
0000210 (human sample)
0000101 (sample by species)
0000001 (sample)
0100297 (carcinoma cell line sample)
0100353 (lung cell line sample)
0102061 (bronchogenic carcinoma cell sample)
0101120 (epithelial cell line sample)
0100762 (lung cancer cell line sample)
0102206 (small cell lung cancer cell line sample)
0100189 (small cell lung cancer cell sample)
0103026 (NCI-H82 cell sample)

Ancestor terms (development)<b>Summary:</b>Connected ontology terms with develops_from, derives_from or preceded_by relationship <br><b>Analyst:</b> Hideya Kawaji <br><br>link to source data<br>data
UBERON:0001041 (foregut)
UBERON:0008947 (respiratory primordium)
UBERON:0002532 (epiblast (generic))
UBERON:0006595 (presumptive endoderm)
UBERON:0010316 (germ layer / neural crest)

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